cluster # 13852

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Oryza sativa
cluster # 13852 cluster # 13852 Sequences # 14 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_13852#0 length = 1201 sequences # 10
consensus_13852#1 length = 1060 sequences # 1

consensus_13852#2 length = 792 sequences # 2
consensus_13852#3 length = 431 sequences # 1

consensusID : consensus_13852#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 10
consensus length = 1201
fasta sequence

                              [TCGTCTCCTCTTGGCCTTTCCTCCATCCCTTCGGAAAAACCCTAGCAAATCCCCGCCTCGATCGGAAGGAGACCATGGCGACGGCGAGGCTCCGATCCGCCTCCTCCCTCCGCGGGGTCCTCCTCCGCCACTGCTCCGTGGGAACCA-CC-TCGCCGCCGCAAGTTTTCTCCCGCGTCTCAGATCTTCAGGCTCCTGGATGTATTGCATGGAAGCATTTCTCAACATTCAAGCCTAATCCTCTTCCAAAACTTGATGGCCTTGGTTCAGTCACTTGTTTGTACAGTCAGGCAAGATGGGCTTCTCAAGCTGCTGCTGTTAAAGAAAC-TGAAAATAGTGGCAGC-AAGATAAGCATT-GGGCCAAAATCCAAGCAGATCAAGGAAGATGACAAAGA-TGACA-GGCTAG-TTTACCA-GGGACCTATATCATCGACCATAA-GAAAAGTGAAGCTTCTTTCTCTGTCCACCTGCTGTCTCTCTGTGTCGCTTGGCCCTGTGATAACATTCATGACATCCCCAGATATGAATGTAATCCTCAAGGGCGCTGTTGCATCCACTGTCATTTTCCTCAGTGCTACCACAACGGCAGCCTTACACTGG--TTTGTGAG-CCCGT-ACATTCAC-AAGCTCAGGTGGCGACCAGGTTCAGATAGCTTTGAAGCAGAGATTATGTCATGGCTGGCTACACCCCTCACAAGGACAATCAAGTTTGCTGATGTCAGGCCTCCAGAGACCAACAGACCTTTTGTCACTTTTAGGGCTGAAGGGAACTTCTATTTTGTTGATGCCGAGCACTTCCCGAACAAGGCTTTGTTGGCGAGGCTTACTCCCAAGCACCCTAATGAGTCTGCATTCAAGAACTTGTGATTGAAGG-TTGCCCA-ATGACCTCATGGCTGCACTCGCGTTCATGATCATTTGTTGGCAGTTTACATTTTTATTGTGATACCTCCCTGCTAATACTTCCAGAAGAAGTAGTATACTATGTTATTAGCGTTCCTTTAAATCCATGTGGAAATC-AGTAAATGCTGGTGTCATACTACGATTTTAGTTAAGACA-CTGAGATGGCGTGCTGACTGTTCTTAATAAGTAGCGGTGACTTTTGCTTAGGACACCTCCCAACATTCTGTTGTTTATGATGTTGCAATGCTACACGCCCGTGTGTGCTTGGCAGTTTAATTACGTGATGCTCTTGTTTTGGCTTAAAAAAAAAA]

[+] EMBL CF295630             [TCGTCTCCTCTTGGCCTTTCCTCCATCCCTTCGGAAAAACCCTAGCAAATCCCCGCCTCGATCGGAAGGAGACCATGGCGACGGCGAGGCTCCGATCCGCCTCCTCCCTCCGCGGGGTCCTCCTCCGCCACTGCTCCGTGGGAACCATCT TCGCCGCCGCAAGTTTTCTCCCGCGTCTCAGATCTTCAGGCTCCTGGATGTATTGCATGGAAGCATTTCTCAACATTCAAGCCTAATCCTCTTCCAAAACTTGATGGCCTTGGTTCAGTCACTTGTTTGTACAGTCAGGCAAGATGGGCTTCTCAAGCTGCTGCTGTTAAAGAAAC TGAAAATAGTGGCAGC AAGATAAGCATT GGGCCAAAATCCAAGCAGATCAAGGAAGATGACAAAGA TGACA GGCTAG TTTACCA GGGACCTATATCATCGACCATAA GAAAAGTGAAGCTTCTTTCTCTGTCCACCTGCTGTCTCTCTGTGTCACTTGGCCCTGTGATAACATTCATGACATCCCCAGATATGAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CF295185             [                                          TAGCAAATCCCCGCCTCGATCGGAAGGAGACCATGGCGACGGCGAGGCTCCGATCCGCCTCCTCCCTCCGCGGGGTCCTCCTCCGCCACTGCTCCGTGGGAACCA CC TCGCCGCCGCAAGTTTTCTCCCGCGTCTCAGATCTTCAGGCTCCTGGATGTATTGCATGGAAGCATTTCTCAACATTCAAGCCTAATC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL AK102872             [                                                 TCCCCGCCTCGATCGGAAGGAGACCATGGCGACGGCGAGGCTCCGATCCGCCTCCTCCCTCCGCGGGGTCCTCCTCCGCCACTGCTCCGTGGGAACCA CC TCGCCGCCGCAAGTTTTCTCCCGCGTCTCAGATCTTCAGGCTCCTGGATGTATTGCATGGAAGCATTTCTCAACATTCAAGCCTAATCCTCTTCCAAAACTTGATGGCCTTGGTTCAGTCACTTGTTTGTACAGTCAGGCAAGATGGGCTTCTCAAGCTGCTGCTGTTAAAGAAAC TGAAAATAGTGGCAGC AAGATAAGCATT GGGCCAAAATCCAAGCAGATCAAGGAAGATGACAAAGA TGACA GGCTAG TTTACCA GGGACCTATATCATCGACCATAA GAAAAGTGAAGCTTCTTTCTCTGTCCACCTGCTGTCTCTCTGTGTCGCTTGGCCCTGTGATAACATTCATGACATCCCCAGATATGAATGTAATCCTCAAGGGCGCTGTTGCATCCACTGTCATTTTCCTCAGTGCTACCACAACGGCAGCCTTACACTGG  TTTGTGAG CCCGT ACATTCAC AAGCTCAGGTGGCGACCAGGTTCAGATAGCTTTGAAGCAGAGATTATGTCATGGCTGGCTACACCCCTCACAAGGACAATCAAGTTTGCTGATGTCAGGCCTCCAGAGACCAACAGACCTTTTGTCACTTTTAGGGCTGAAGGGAACTTCTATTTTGTTGATGCCGAGCACTTCCCGAACAAGGCTTTGTTGGCGAGGCTTACTCCCAAGCACCCTAATGAGTCTGCATTCAAGAACTTGTGATTGAAGG TTGCCCA ATGACCTCATGGCTGCACTCGCGTTCATGATCATTTGTTGGCAGTTTACATTTTTATTGTGATACCTCCCTGCTAATACTTCCAGAAGAAGTAGTATACTATGTTATTAGCGTTCCTTTAAATCCATGTGGAAATC AGTAAATGCTGGTGTCATACTACGATTTTAGTTAAGACA CTGAGATGGCGTGCTGACTGTTCTTAATAAGTAGCGGTGACTTTTGCTTAGGACACCTCCCAACATTCTGTTGTTTATGATGTTGCAATGCTACACGCCCGTGTGTGCTTGGCAGTTTAATTACGTGATGCTCTT                    ]
[+] EMBL AK059849             [                                                  CCCCGCCTCGATCGGAAGGAGACCATGGCGACGGCGAGGCTCCGATCCGCCTCCTCCCTCCGCGGGGTCCTCCTCCGCCACTGCTCCGTGGGAACCA CC TCGCCGCCGCAAGTTTTCTCCCGCGTCTCAGATCTTCAGGCTCCTGGATGTATTGCATGGAAGCATTTCTCAACATTCAAGCCTAATCCTCTTCCAAAACTTGATGGCCTTGGTTCAGTCACTTGTTTGTACAGTCAGGCAAGATGGGCTTCTCAAGCTGCTGCTGTTAAAGAAAC TGAAAATAGTGGCAGC AAGATAAGCATT GGGCCAAAATCCAAGCAGATCAAGGAAGATGACAAAGA TGACA GGCTAG TTTACCA GGGACCTATATCATCGACCATAA GAAAAGTGAAGCTTCTTTCTCTGTCCACCTGCTGTCTCTCTGTGTCGCTTGGCCCTGTGATAACATTCATGACATCCCCAGATATGAATGTAATCCTCAAGGGCGCTGTTGCATCCACTGTCATTTTCCTCAGTGCTACCACAACGGCAGCCTTACACTGG  TTTGTGAG CCCGT ACATTCAC AAGCTCAGGTGGCGACCAGGTTCAGATAGCTTTGAAGCAGAGATTATGTCATGGCTGGCTACACCCCTCACAAGGACAATCAAGTTTGCTGATGTCAGGCCTCCAGAGACCAACAGACCTTTTGTCACTTTTAGGGCTGAAGGGAACTTCTATTTTGTTGATGCCGAGCACTTCCCGAACAAGGCTTTGTTGGCGAGGCTTACTCCCAAGCACCCTAATGAGTCTGCATTCAAGAACTTGTGATTGAAGG TTGCCCA ATGACCTCATGGCTGCACTCGCGTTCATGATCATTTGTTGGCAGTTTACATTTTTATTGTGATACCTCCCTGCTAATACTTCCAGAAGAAGTAGTATACTATGTTATTAGCGTTCCTTTAAATCCATGTGGAAATC AGTAAATGCTGGTGTCATACTACGATTTTAGTTAAGACA CTGAGATGGCGTGCTGACTGTTCTTAATAAGTAGCGGTGACTTTTGCTTAGGACACCTCCCAACATTCTGTTGTTTATGATGTTGCAATGCTACACGCCCGTGTGTGC                                               ]
[+] EMBL C25976               [                                                                   GGAGACCATGGCGACGGCGAGGCTCCGATCCGCCTCCTCCCTCCGCGGGGTCCTCCTCCGCCACTGCTCCGTGGGAACCA CCTTCGCCGCCGCAAGTTTTCTCCCGCGTCTCANATCTTCAGGCTCCTGGATGTATTGCATGGAAGCATTTCTCAACATTCAAGCCTAATCCTCTTCCAAAACTTGATGGCCTTGGTTCAGTCACTTGTTTGTACAGTCAGGCAAGATGGGCTTCTCAAGCTGCTGCTGTTAAAGAAACTTGAAAATAGTGGCAGCAAAGATAAGCATTGGGGCCAAAATCCAAGCAGATCAAGGAAGATGACAAAGATTGACAGGGCTAGTTTTACCAGGGGACCTATATCATCGNCCATAAGGAAAAGTGAGGGTTCTTTCTCTGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL C27047               [                                                                          ATGGCGACGGCGAGGCTCCGATCCGCCTCCTCCCTCCGCGGGGTCCTCCTCCGCCACTGCTCCGTGGGAACCA CC TCGCCGCCGCAAGTTTTCTCCCGCGTCTCAGATCTTCAGGCTCCTGGATGTATTGCATGGAAGCATTTCTCAACATTCAAGCCTAATCCTCTTCCAAAACTTGATGGCCTTGGTTCAGTCACTTGTTTGTACAGTCAGGCAAGATGGGCTTCTCAAGCTGCTGCTGTTAAAGAAAC TGAAAATAGTGGCAGC AAGATAAGCATT GGGCCAAAATCCAAGCAGATCAAGGAAGATGACAAAGA TGACA GGCTAG TTTACCA GGGACCTATAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL AU100654             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 CTTACACTGGGTTTTGTGAGCCCCGTAACATTCACAAAGNTCAGGTGGCGACCAGGTTCAGATAGCTTTGAAGCAGAGATTATGTCATGGCTGGCTACACCCCTCACAAGGACAATCAAGTTTGCTGATGTCAGGCCTCCAGAGACCAACAGACCTTTTGTCACTTTTAGGGCTGAAGGGAACTTCTATTTTGTTGATGCCGAGCACTTCCCGAACAAGGCTTTGTTGGCGAGGCTTACTCCCAAGCACCCTAATGAGTCTGCATTCAAGAACTTGTGATTGAAGG TTGCCCA ATGACCTCATGGCTGCACTCGCGTTCATGATCATTTGTTGGCAGTTTACATTTTTATTGTGATACCTCCCTGCTAATACTTCCAGAAGAAGTAGTATACTATGTTATTAGCGTTCCTTTAAATCCATGTGGAAATC AGTAAATGCTGGTGTCATACTACGATTTTAGTTAAGACA CTGAGATGGCGTGCTGACTGTTCTTAATAAGTAGCGGTGACTTTTGCTTAGGACACCTCCCNACATTCTGTTGTTTATGATGTTGCAATGCTACACGCCCGTGTGTGCTTGGCAGTTTAATTAaaaaaaaa                        ]
[+] EMBL AK058371             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 TATGTCATGGCTGGCTACACCCCTCACAAGGACAATCAAGTTTGCTGATGTCAGGCCTCCAGAGACCAACAGACCTTTTGTCACTTTTAGGGCTGAAGGGAACTTCTATTTTGTTGATGCCGAGCACTTCCCGAACAAGGCTTTGTTGGCGAGGCTTACTCTCAAGCACCCTAATGAGTCTGCATTCAAGAACTTGTGATTGAAGG TTGCCCA ATGACCTCATGGCTGCACTCGCGTTCATGATCATTTGTTGGCAGTTTACATTTTTATTGTGATACCTCCCTGCTAATACTTCCAGAAGAAGTAGTATACTATGTTATTAGCGTTCCTTTAAATCCATGT                                                                                                                                                                                                           ]
[+] EMBL BI807376             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 TATGTCAT GCTGGCTACACCCCTCACAAGGACAATCAAGTTTGCTGATGTCA GCCTCCAGAGACCAACAGACCTTTTGTCACTTTTAGGGCTGAAGGGAACTTCTATTTTGTTGATGCCGAGCACTTCCCGAACAAGGCTTTGTTGGCGAGGCTTACTCCCAAGCACCCTAATGAGTCTGCATTCAAGAACTTGTGATTGAAGGTTTGCCCACATGACCTCATGGCTGCACTCGCGTTCATGATCATTTGTT GCAGTTTACATTTTTATTGTGATACCTCCCTGCTAATACTTCCAGAAGAAGTAGTATACTATGTTATTAGCGTTCCTTTAAATCCATGTGGAAATCAAGTAAATGCTGGTGTCATACTACGATTTTAGTTAAGACACCTGAGATGGCGTGCTGACTGTTCTTAATAAGTAGCGGTGACTTTTGCTTAGGACACCTCCCAACATTCTGTTGTTTATGATGTTGCAATGCTACACGCCCGTGTGTGCTTGGCAGTTTAATTACGTGATGCTCTTGTTTTGGCTTAAAAAAAAAA]
[-] EMBL CF295629             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         CTCCAGAGACCAACAGACCTTTTGTCACTTTTAGGGCTGAAGGGAACTTCTATTTTGTTGATGCCGAGCACTTCCCGAACAAGGCTTTGTTGGCGAGGCTTACTCCCAAGCACCCTAATGAGTCTGCATTCAAGAACTTGTGATTGAAGG TTGCCCA ATGACCTCATGGCTGCACTCGCGTTCATGATCATTTGTTGGCAGTTTACATTTTTATTGTGATACCTCCCTGCTAATACTTCCAGAAGAAGTAGTATAGTATGTTATTAGCGTTCCTTTAAATCCATGTGGAAATC AGTAAATGCTGGTGTCATACTACGATTTTAGTTAAGACA CTGAGATGGCGTGCTGACTGTTCTTAATAAGTAGCGGTGACTTTTGCTTAGGACACCTCCCAACATTCTGTTGTTTATGATGTTGCAATGCTACACGCCCGTGTGTGCTTGGCAGTTTAATTACGTGATGCTCTTGTaaaaaaa           ]




>consensus_13852#0
TCGTCTCCTCTTGGCCTTTCCTCCATCCCTTCGGAAAAACCCTAGCAAATCCCCGCCTCG
ATCGGAAGGAGACCATGGCGACGGCGAGGCTCCGATCCGCCTCCTCCCTCCGCGGGGTCC
TCCTCCGCCACTGCTCCGTGGGAACCACCTCGCCGCCGCAAGTTTTCTCCCGCGTCTCAG
ATCTTCAGGCTCCTGGATGTATTGCATGGAAGCATTTCTCAACATTCAAGCCTAATCCTC
TTCCAAAACTTGATGGCCTTGGTTCAGTCACTTGTTTGTACAGTCAGGCAAGATGGGCTT
CTCAAGCTGCTGCTGTTAAAGAAACTGAAAATAGTGGCAGCAAGATAAGCATTGGGCCAA
AATCCAAGCAGATCAAGGAAGATGACAAAGATGACAGGCTAGTTTACCAGGGACCTATAT
CATCGACCATAAGAAAAGTGAAGCTTCTTTCTCTGTCCACCTGCTGTCTCTCTGTGTCGC
TTGGCCCTGTGATAACATTCATGACATCCCCAGATATGAATGTAATCCTCAAGGGCGCTG
TTGCATCCACTGTCATTTTCCTCAGTGCTACCACAACGGCAGCCTTACACTGGTTTGTGA
GCCCGTACATTCACAAGCTCAGGTGGCGACCAGGTTCAGATAGCTTTGAAGCAGAGATTA
TGTCATGGCTGGCTACACCCCTCACAAGGACAATCAAGTTTGCTGATGTCAGGCCTCCAG
AGACCAACAGACCTTTTGTCACTTTTAGGGCTGAAGGGAACTTCTATTTTGTTGATGCCG
AGCACTTCCCGAACAAGGCTTTGTTGGCGAGGCTTACTCCCAAGCACCCTAATGAGTCTG
CATTCAAGAACTTGTGATTGAAGGTTGCCCAATGACCTCATGGCTGCACTCGCGTTCATG
ATCATTTGTTGGCAGTTTACATTTTTATTGTGATACCTCCCTGCTAATACTTCCAGAAGA
AGTAGTATACTATGTTATTAGCGTTCCTTTAAATCCATGTGGAAATCAGTAAATGCTGGT
GTCATACTACGATTTTAGTTAAGACACTGAGATGGCGTGCTGACTGTTCTTAATAAGTAG
CGGTGACTTTTGCTTAGGACACCTCCCAACATTCTGTTGTTTATGATGTTGCAATGCTAC
ACGCCCGTGTGTGCTTGGCAGTTTAATTACGTGATGCTCTTGTTTTGGCTTAAAAAAAAA
A

consensusID : consensus_13852#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1060
fasta sequence

                              [CCCCGCCTCGATCGGAAGGAGACCATGGCGACGGCGAGGCTCCGATCCGCCTCCTCCCTCCGCGGGGTCCTCCTCCGCCACTGCTCCGTGGGAACCACCTCGCCGCCGCAAGTTTTCTCCCGCGTCTCAGATCTTCAGGCTCCTGGATGTATTGCATGGAAGCATTTCTCAACATTCAAGCCTAATCCTCTTCCAAAATCCAAGCAGATCAAGGAAGATGACAAAGATGACAGGCTAGTTTACCAGGGACCTATATCATCGACCATAAGAAAAGTGAAGCTTCTTTCTCTGTCCACCTGCTGTCTCTCTGTGTCGCTTGGCCCTGTGATAACATTCATGACATCCCCAGATATGAATGTAATCCTCAAGGGCGCTGTTGCATCCACTGTCATTTTCCTCAGTGCTACCACAACGGCAGCCTTACACTGGTTTGTGAGCCCGTACATTCACAAGCTCAGGTGGCGACCAGGTTCAGATAGCTTTGAAGCAGAGATTATGTCATGGCTGGCTACACCCCTCACAAGGACAATCAAGTTTGCTGATGTCAGGCCTCCAGAGACCAACAGACCTTTTGTCACTTTTAGGGCTGAAGGGAACTTCTATTTTGTTGATGCCGAGCACTTCCCGAACAAGGCTTTGTTGGCGAGGCTTACTCCCAAGCACCCTAATGAGTCTGCATTCAAGAACTTGTGATTGAAGGTTGCCCAATGACCTCTTGGCTGCACTCGCGTTCATGATCATTTGTTGGCAGTTTACATTTTTATTGTGATACCTCCCTGCTAATACTTCCAGAAGAAGTAGTATACTATGTTATTAGCGTTCCTTTAAATCCATGTGGAAATCAGTAAATGCTGGTGTCATACTACGATTTTAGTTAAGACACTGAGATGGCGTGCTGACTGTTCTTAATAAGTAGCGGTGACTTTTGCTTAGGACACCTCCCAACATTCTGTTGTTTATGATGTTGCAATGCTACACGCCCGTGTGTGCTTGGCAGTTTAATTACGTGATGCTCTTGTTTTGGCTTAGAGATATGATATATTTGCAACCATTGTTCAAA]

[+] EMBL AK120043             [CCCCGCCTCGATCGGAAGGAGACCATGGCGACGGCGAGGCTCCGATCCGCCTCCTCCCTCCGCGGGGTCCTCCTCCGCCACTGCTCCGTGGGAACCACCTCGCCGCCGCAAGTTTTCTCCCGCGTCTCAGATCTTCAGGCTCCTGGATGTATTGCATGGAAGCATTTCTCAACATTCAAGCCTAATCCTCTTCCAAAATCCAAGCAGATCAAGGAAGATGACAAAGATGACAGGCTAGTTTACCAGGGACCTATATCATCGACCATAAGAAAAGTGAAGCTTCTTTCTCTGTCCACCTGCTGTCTCTCTGTGTCGCTTGGCCCTGTGATAACATTCATGACATCCCCAGATATGAATGTAATCCTCAAGGGCGCTGTTGCATCCACTGTCATTTTCCTCAGTGCTACCACAACGGCAGCCTTACACTGGTTTGTGAGCCCGTACATTCACAAGCTCAGGTGGCGACCAGGTTCAGATAGCTTTGAAGCAGAGATTATGTCATGGCTGGCTACACCCCTCACAAGGACAATCAAGTTTGCTGATGTCAGGCCTCCAGAGACCAACAGACCTTTTGTCACTTTTAGGGCTGAAGGGAACTTCTATTTTGTTGATGCCGAGCACTTCCCGAACAAGGCTTTGTTGGCGAGGCTTACTCCCAAGCACCCTAATGAGTCTGCATTCAAGAACTTGTGATTGAAGGTTGCCCAATGACCTCTTGGCTGCACTCGCGTTCATGATCATTTGTTGGCAGTTTACATTTTTATTGTGATACCTCCCTGCTAATACTTCCAGAAGAAGTAGTATACTATGTTATTAGCGTTCCTTTAAATCCATGTGGAAATCAGTAAATGCTGGTGTCATACTACGATTTTAGTTAAGACACTGAGATGGCGTGCTGACTGTTCTTAATAAGTAGCGGTGACTTTTGCTTAGGACACCTCCCAACATTCTGTTGTTTATGATGTTGCAATGCTACACGCCCGTGTGTGCTTGGCAGTTTAATTACGTGATGCTCTTGTTTTGGCTTAGAGATATGATATATTTGCAACCATTGTTCAAA]




>consensus_13852#1
CCCCGCCTCGATCGGAAGGAGACCATGGCGACGGCGAGGCTCCGATCCGCCTCCTCCCTC
CGCGGGGTCCTCCTCCGCCACTGCTCCGTGGGAACCACCTCGCCGCCGCAAGTTTTCTCC
CGCGTCTCAGATCTTCAGGCTCCTGGATGTATTGCATGGAAGCATTTCTCAACATTCAAG
CCTAATCCTCTTCCAAAATCCAAGCAGATCAAGGAAGATGACAAAGATGACAGGCTAGTT
TACCAGGGACCTATATCATCGACCATAAGAAAAGTGAAGCTTCTTTCTCTGTCCACCTGC
TGTCTCTCTGTGTCGCTTGGCCCTGTGATAACATTCATGACATCCCCAGATATGAATGTA
ATCCTCAAGGGCGCTGTTGCATCCACTGTCATTTTCCTCAGTGCTACCACAACGGCAGCC
TTACACTGGTTTGTGAGCCCGTACATTCACAAGCTCAGGTGGCGACCAGGTTCAGATAGC
TTTGAAGCAGAGATTATGTCATGGCTGGCTACACCCCTCACAAGGACAATCAAGTTTGCT
GATGTCAGGCCTCCAGAGACCAACAGACCTTTTGTCACTTTTAGGGCTGAAGGGAACTTC
TATTTTGTTGATGCCGAGCACTTCCCGAACAAGGCTTTGTTGGCGAGGCTTACTCCCAAG
CACCCTAATGAGTCTGCATTCAAGAACTTGTGATTGAAGGTTGCCCAATGACCTCTTGGC
TGCACTCGCGTTCATGATCATTTGTTGGCAGTTTACATTTTTATTGTGATACCTCCCTGC
TAATACTTCCAGAAGAAGTAGTATACTATGTTATTAGCGTTCCTTTAAATCCATGTGGAA
ATCAGTAAATGCTGGTGTCATACTACGATTTTAGTTAAGACACTGAGATGGCGTGCTGAC
TGTTCTTAATAAGTAGCGGTGACTTTTGCTTAGGACACCTCCCAACATTCTGTTGTTTAT
GATGTTGCAATGCTACACGCCCGTGTGTGCTTGGCAGTTTAATTACGTGATGCTCTTGTT
TTGGCTTAGAGATATGATATATTTGCAACCATTGTTCAAA

consensusID : consensus_13852#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 792
fasta sequence

                              [GAGCCCGTGCATTCACAAGCTCAGGTGGCGACCAGGTTCAGATAGCTTTGAAGCAGAGATTATGTAGTGGCTGGCTACACCCCTCACAAGGACAATCAAGTTTGCTGATGTCAGGCCTCCAGAGACCAACAGACCTTTTGTCACTTTTAGGGCTGAAGGGAACTTCTATTTTGTTGATGCCGAGCACTTCCCGAACAAGGCTTTGTTGGCGAGGCTTACTCCCAAGCACCCTAATGAGTCTGCATTCAAGAACTTGTGATTGAAGGATGCCCAGTGACCTCATGGCTGCACTCGCGTTCATGATCATTTGGTTGGCAGCGGACATTGGTATTGTGATACCTCCCTGCTAATACTTGCAGAAGAAGTAGTATACTTTGGGTATTAGCGTTCCTTTAAATGCCATGTGGGAGTCAGTGCGTGCCTGGTGTCGTACTACGACTTTCGGTCATACACTGCTAGTGGCGAGCTGACTGGTCTGAATGAGGAGCGGCGACTTTTATTTATGACACTCTCCGACGTGTGGGGAGATAGCGATGTAGAGATGCTATCACCCTGTTTCGTCCTTGATTGGAGGCCCCTGTCCACTGTTCTGCATCGTATATGTCCTATGCTCCGCGTATTGTGCTGCGTTTAGAGCGCTGCGTGTCGTGACACCTCGTGTCTCCCGCTCGGTGGCATGGGAGGTATGCGGTTCTGCCTCCAGGATCAACCTCCTAGCCACCACACCCCATTAGCGACCGAAGACTACGTAGGTCGCGTGTGCTTGACGGCGCCCAGGGACGTATTGTGCAC]

[+] EMBL BE040424             [GAGCCCGTGCATTCACAAGCTCAGGTGGCGACCAGGTTCAGATAGCTTTGAAGCAGAGATTATGTAGTGGCTGGCTACACCCCTCACAAGGACAATCAAGTTTGCTGATGTCAGGCCTCCAGAGACCAACAGACCTTTTGTCACTTTTAGGGCTGAAGGGAACTTCTATTTTGTTGATGCCGAGCACTTCCCGAACAAGGCTTTGTTGGCGAGGCTTACTCCCAAGCACCCTAATGAGTCTGCATTCAAGAACTTGTGATTGAAGGATGCCCAGTGACCTCATGGCTGCACTCGCGTTCATGATCATTTGGTTGGCAGCGGACATTGGTATTGTGATACCTCCCTGCTAATACTTGCAGAAGAAGTAGTATACTTTGGGTATTAGCGTTCCTTTAAATGCCATGTGGGAGTCAGTGCGTGCCTGGTGTCGTACTACGACTTTCGGTCATACACTGCTAGTGGCGAGCTGACTGGTCTGAATGAGGAGCGGCGACTTTTATTTATGACACTCTCCGACGTGTGGGGAGATAGCGATGTAGAGATGCTATCACCCTGTTTCGTCCTTGATTGGAGGCCCCTGTCCACTGTTCTGCATCGTATATGTCCTATGCTCCGCGTATTGTGCTGCGTTTAGAGCGCTGCGTGTCGTGACACCTCGTGTCTCCCGCTCGGTGGCATGGGAGGTATGCGGTTCTGCCTCCAGGATCAACCTCCTAGCCACCACACCCCATTAGCGACCGAAGACTACGTAGGTCGCGTGTGCTTGACGGCGCCCAGGGACGTATTGTGCAC]
[+] EMBL CA758935             [GAGCCCGTGCATTCACAAGCTCAGGTGGCGACCAGGTTCAGATAGCTTTGAAGCAGAGATTATGTAGTGGCTGGCTACACCCCTCACAAGGACAATCAAGTTTGCTGATGTCAGGCCTCCAGAGACCAACAGACCTTTTGTCACTTTTAGGGCTGAAGGGAACTTCTATTTTGTTGATGCCGAGCACTTCCCGAACAAGGCTTTGTTGGCGAGGCTTACTCCCAAGCACCCTAATGAGTCTGCATTCAAGAACTTGTGATTGAAGGTTGCCCAATGACCTCATGGCTGCACTCGCGTTCATGATCATTT GTTGGCAGTTTACATTTTTATTGTGATACCTCCCTGCTAATACTTCCAGAAAAAGTAGTATACTAT GTTATTAGCGTTCCTTTAAATGCCATGTGGGAGTCAGTGCGTGCCTGGTGTCGTACTACGACTTTCGGTCATACACTGCTAGTGGCGAGCTGACTGGTCTGAATGAGGAGCGGCGACTTTTATTTATGACACTCTCCGACGTGTGGGGAGATAGCGATGTAGAGATGCTATCACCCTGTTTCGTCCTTGATTGGAGGCCCCTGTCCACTGTTCTGCATCGTATATGTCCTATGCTCCGCGTATTGTGCTGCGTTTAGAGCGCTGCGTGTCGTGACACCTCGTGTCTCCCGCTCGGTGGCATGGGAGGTATGCGGTTCTGCCTCCAGGATCAACCTCCTAGCCACCACACCCCATTAGCGACCGAAGACTACGTAGGTCGCGTGTGCTTGACGGCGCCCAGGGACGTATTGTGCAC]




>consensus_13852#2
GAGCCCGTGCATTCACAAGCTCAGGTGGCGACCAGGTTCAGATAGCTTTGAAGCAGAGAT
TATGTAGTGGCTGGCTACACCCCTCACAAGGACAATCAAGTTTGCTGATGTCAGGCCTCC
AGAGACCAACAGACCTTTTGTCACTTTTAGGGCTGAAGGGAACTTCTATTTTGTTGATGC
CGAGCACTTCCCGAACAAGGCTTTGTTGGCGAGGCTTACTCCCAAGCACCCTAATGAGTC
TGCATTCAAGAACTTGTGATTGAAGGATGCCCAGTGACCTCATGGCTGCACTCGCGTTCA
TGATCATTTGGTTGGCAGCGGACATTGGTATTGTGATACCTCCCTGCTAATACTTGCAGA
AGAAGTAGTATACTTTGGGTATTAGCGTTCCTTTAAATGCCATGTGGGAGTCAGTGCGTG
CCTGGTGTCGTACTACGACTTTCGGTCATACACTGCTAGTGGCGAGCTGACTGGTCTGAA
TGAGGAGCGGCGACTTTTATTTATGACACTCTCCGACGTGTGGGGAGATAGCGATGTAGA
GATGCTATCACCCTGTTTCGTCCTTGATTGGAGGCCCCTGTCCACTGTTCTGCATCGTAT
ATGTCCTATGCTCCGCGTATTGTGCTGCGTTTAGAGCGCTGCGTGTCGTGACACCTCGTG
TCTCCCGCTCGGTGGCATGGGAGGTATGCGGTTCTGCCTCCAGGATCAACCTCCTAGCCA
CCACACCCCATTAGCGACCGAAGACTACGTAGGTCGCGTGTGCTTGACGGCGCCCAGGGA
CGTATTGTGCAC

consensusID : consensus_13852#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 431
fasta sequence

                              [GCAGCCTTACACTGGTTTGTGAGCCCGTACATTCACAAGCTCAGGTGGCGACCAGGTTCAGATAGCTTTGAAGCAGAGATTATGTCATGGCTGGCTACACCCCTCNCAAGGACAATCAAGTTTGCTGATGTCAGGCCTCCAGAGACCAACAGACCTTTTGTCACTTTTAGGGCTGAAGGGAACTTNTATTTTGTTGATGCCGAGCACTTCCCGAACAAGGCTTTGTTGGCGAGGCTTACTCCCAAGCACCCTAATGAGTNTGCATTCAAGAACTTGTGATTGAAGGTTGCCCAATGACCTCATGGCTGCACTCGCGTTCATGATCATTTGTTGGCAGTTTACATTTTTATTGTGATACCTCCCTGCTAATACTTCCAGAAGAAGTAGTATACTATGTTATTAGCGTTCCTTTAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU174252             [GCAGCCTTACACTGGTTTGTGAGCCCGTACATTCACAAGCTCAGGTGGCGACCAGGTTCAGATAGCTTTGAAGCAGAGATTATGTCATGGCTGGCTACACCCCTCNCAAGGACAATCAAGTTTGCTGATGTCAGGCCTCCAGAGACCAACAGACCTTTTGTCACTTTTAGGGCTGAAGGGAACTTNTATTTTGTTGATGCCGAGCACTTCCCGAACAAGGCTTTGTTGGCGAGGCTTACTCCCAAGCACCCTAATGAGTNTGCATTCAAGAACTTGTGATTGAAGGTTGCCCAATGACCTCATGGCTGCACTCGCGTTCATGATCATTTGTTGGCAGTTTACATTTTTATTGTGATACCTCCCTGCTAATACTTCCAGAAGAAGTAGTATACTATGTTATTAGCGTTCCTTTAAAAAAAAAAAAAAAAAAA]




>consensus_13852#3
GCAGCCTTACACTGGTTTGTGAGCCCGTACATTCACAAGCTCAGGTGGCGACCAGGTTCA
GATAGCTTTGAAGCAGAGATTATGTCATGGCTGGCTACACCCCTCNCAAGGACAATCAAG
TTTGCTGATGTCAGGCCTCCAGAGACCAACAGACCTTTTGTCACTTTTAGGGCTGAAGGG
AACTTNTATTTTGTTGATGCCGAGCACTTCCCGAACAAGGCTTTGTTGGCGAGGCTTACT
CCCAAGCACCCTAATGAGTNTGCATTCAAGAACTTGTGATTGAAGGTTGCCCAATGACCT
CATGGCTGCACTCGCGTTCATGATCATTTGTTGGCAGTTTACATTTTTATTGTGATACCT
CCCTGCTAATACTTCCAGAAGAAGTAGTATACTATGTTATTAGCGTTCCTTTAAAAAAAA
AAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13852#0      TCGTCTCCTCTTGGCCTTTCCTCCATCCCTTCGGAAAAACCCTAGCAAATCCCCGCCTCG 60
consensus_13852#1      --------------------------------------------------CCCCGCCTCG 10
consensus_13852#3      ------------------------------------------------------------
consensus_13852#2      ------------------------------------------------------------
                                                                                   

consensus_13852#0      ATCGGAAGGAGACCATGGCGACGGCGAGGCTCCGATCCGCCTCCTCCCTCCGCGGGGTCC 120
consensus_13852#1      ATCGGAAGGAGACCATGGCGACGGCGAGGCTCCGATCCGCCTCCTCCCTCCGCGGGGTCC 70
consensus_13852#3      ------------------------------------------------------------
consensus_13852#2      ------------------------------------------------------------
                                                                                   

consensus_13852#0      TCCTCCGCCACTGCTCCGTGGGAACCACCTCGCCGCCGCAAGTTTTCTCCCGCGTCTCAG 180
consensus_13852#1      TCCTCCGCCACTGCTCCGTGGGAACCACCTCGCCGCCGCAAGTTTTCTCCCGCGTCTCAG 130
consensus_13852#3      ------------------------------------------------------------
consensus_13852#2      ------------------------------------------------------------
                                                                                   

consensus_13852#0      ATCTTCAGGCTCCTGGATGTATTGCATGGAAGCATTTCTCAACATTCAAGCCTAATCCTC 240
consensus_13852#1      ATCTTCAGGCTCCTGGATGTATTGCATGGAAGCATTTCTCAACATTCAAGCCTAATCCTC 190
consensus_13852#3      ------------------------------------------------------------
consensus_13852#2      ------------------------------------------------------------
                                                                                   

consensus_13852#0      TTCCAAAACTTGATGGCCTTGGTTCAGTCACTTGTTTGTACAGTCAGGCAAGATGGGCTT 300
consensus_13852#1      TTCCAAAA---------------------------------------------------- 198
consensus_13852#3      ------------------------------------------------------------
consensus_13852#2      ------------------------------------------------------------
                                                                                   

consensus_13852#0      CTCAAGCTGCTGCTGTTAAAGAAACTGAAAATAGTGGCAGCAAGATAAGCATTGGGCCAA 360
consensus_13852#1      ------------------------------------------------------------
consensus_13852#3      ------------------------------------------------------------
consensus_13852#2      ------------------------------------------------------------
                                                                                   

consensus_13852#0      AATCCAAGCAGATCAAGGAAGATGACAAAGATGACAGGCTAGTTTACCAGGGACCTATAT 420
consensus_13852#1      --TCCAAGCAGATCAAGGAAGATGACAAAGATGACAGGCTAGTTTACCAGGGACCTATAT 256
consensus_13852#3      ------------------------------------------------------------
consensus_13852#2      ------------------------------------------------------------
                                                                                   

consensus_13852#0      CATCGACCATAAGAAAAGTGAAGCTTCTTTCTCTGTCCACCTGCTGTCTCTCTGTGTCGC 480
consensus_13852#1      CATCGACCATAAGAAAAGTGAAGCTTCTTTCTCTGTCCACCTGCTGTCTCTCTGTGTCGC 316
consensus_13852#3      ------------------------------------------------------------
consensus_13852#2      ------------------------------------------------------------
                                                                                   

consensus_13852#0      TTGGCCCTGTGATAACATTCATGACATCCCCAGATATGAATGTAATCCTCAAGGGCGCTG 540
consensus_13852#1      TTGGCCCTGTGATAACATTCATGACATCCCCAGATATGAATGTAATCCTCAAGGGCGCTG 376
consensus_13852#3      ------------------------------------------------------------
consensus_13852#2      ------------------------------------------------------------
                                                                                   

consensus_13852#0      TTGCATCCACTGTCATTTTCCTCAGTGCTACCACAACGGCAGCCTTACACTGGTTTGTGA 600
consensus_13852#1      TTGCATCCACTGTCATTTTCCTCAGTGCTACCACAACGGCAGCCTTACACTGGTTTGTGA 436
consensus_13852#3      --------------------------------------GCAGCCTTACACTGGTTTGTGA 22
consensus_13852#2      ----------------------------------------------------------GA 2
                                                                                 **

consensus_13852#0      GCCCGTACATTCACAAGCTCAGGTGGCGACCAGGTTCAGATAGCTTTGAAGCAGAGATTA 660
consensus_13852#1      GCCCGTACATTCACAAGCTCAGGTGGCGACCAGGTTCAGATAGCTTTGAAGCAGAGATTA 496
consensus_13852#3      GCCCGTACATTCACAAGCTCAGGTGGCGACCAGGTTCAGATAGCTTTGAAGCAGAGATTA 82
consensus_13852#2      GCCCGTGCATTCACAAGCTCAGGTGGCGACCAGGTTCAGATAGCTTTGAAGCAGAGATTA 62
                       ****** *****************************************************

consensus_13852#0      TGTCATGGCTGGCTACACCCCTCACAAGGACAATCAAGTTTGCTGATGTCAGGCCTCCAG 720
consensus_13852#1      TGTCATGGCTGGCTACACCCCTCACAAGGACAATCAAGTTTGCTGATGTCAGGCCTCCAG 556
consensus_13852#3      TGTCATGGCTGGCTACACCCCTCNCAAGGACAATCAAGTTTGCTGATGTCAGGCCTCCAG 142
consensus_13852#2      TGTAGTGGCTGGCTACACCCCTCACAAGGACAATCAAGTTTGCTGATGTCAGGCCTCCAG 122
                       ***  ****************** ************************************

consensus_13852#0      AGACCAACAGACCTTTTGTCACTTTTAGGGCTGAAGGGAACTTCTATTTTGTTGATGCCG 780
consensus_13852#1      AGACCAACAGACCTTTTGTCACTTTTAGGGCTGAAGGGAACTTCTATTTTGTTGATGCCG 616
consensus_13852#3      AGACCAACAGACCTTTTGTCACTTTTAGGGCTGAAGGGAACTTNTATTTTGTTGATGCCG 202
consensus_13852#2      AGACCAACAGACCTTTTGTCACTTTTAGGGCTGAAGGGAACTTCTATTTTGTTGATGCCG 182
                       ******************************************* ****************

consensus_13852#0      AGCACTTCCCGAACAAGGCTTTGTTGGCGAGGCTTACTCCCAAGCACCCTAATGAGTCTG 840
consensus_13852#1      AGCACTTCCCGAACAAGGCTTTGTTGGCGAGGCTTACTCCCAAGCACCCTAATGAGTCTG 676
consensus_13852#3      AGCACTTCCCGAACAAGGCTTTGTTGGCGAGGCTTACTCCCAAGCACCCTAATGAGTNTG 262
consensus_13852#2      AGCACTTCCCGAACAAGGCTTTGTTGGCGAGGCTTACTCCCAAGCACCCTAATGAGTCTG 242
                       ********************************************************* **

consensus_13852#0      CATTCAAGAACTTGTGATTGAAGGTTGCCCAATGACCTCATGGCTGCACTCGCGTTCATG 900
consensus_13852#1      CATTCAAGAACTTGTGATTGAAGGTTGCCCAATGACCTCTTGGCTGCACTCGCGTTCATG 736
consensus_13852#3      CATTCAAGAACTTGTGATTGAAGGTTGCCCAATGACCTCATGGCTGCACTCGCGTTCATG 322
consensus_13852#2      CATTCAAGAACTTGTGATTGAAGGATGCCCAGTGACCTCATGGCTGCACTCGCGTTCATG 302
                       ************************ ****** ******* ********************

consensus_13852#0      ATCATTTG-TTGGCAGTTTACATTTTTATTGTGATACCTCCCTGCTAATACTTCCAGAAG 959
consensus_13852#1      ATCATTTG-TTGGCAGTTTACATTTTTATTGTGATACCTCCCTGCTAATACTTCCAGAAG 795
consensus_13852#3      ATCATTTG-TTGGCAGTTTACATTTTTATTGTGATACCTCCCTGCTAATACTTCCAGAAG 381
consensus_13852#2      ATCATTTGGTTGGCAGCGGACATTGGTATTGTGATACCTCCCTGCTAATACTTGCAGAAG 362
                       ******** *******   *****  *************************** ******

consensus_13852#0      AAGTAGTATACTATGT-TATTAGCGTTCCTTTAAAT-CCATGTGGAAATCAGTAAATGC- 1016
consensus_13852#1      AAGTAGTATACTATGT-TATTAGCGTTCCTTTAAAT-CCATGTGGAAATCAGTAAATGC- 852
consensus_13852#3      AAGTAGTATACTATGT-TATTAGCGTTCCTTTAAAA-AAAAAAAAAAAAAAA-------- 431
consensus_13852#2      AAGTAGTATACTTTGGGTATTAGCGTTCCTTTAAATGCCATGTGGGAGTCAGTGCGTGCC 422
                       ************ **  ******************    *      *   *         

consensus_13852#0      TGGTGTCATACTACGATTTTAGTTAAGACACTGAGA-TGGCGTGCTGACTGTTCTTAATA 1075
consensus_13852#1      TGGTGTCATACTACGATTTTAGTTAAGACACTGAGA-TGGCGTGCTGACTGTTCTTAATA 911
consensus_13852#3      ------------------------------------------------------------
consensus_13852#2      TGGTGTCGTACTACGACTTTCGGTCATACACTGCTAGTGGCGAGCTGACTGGTCTGAATG 482
                                                                                   

consensus_13852#0      AGTAGCGGTGACTTTTGCTTAGGACACCTCCCAACAT-TCTGTTGTTTATGATGTTGCAA 1134
consensus_13852#1      AGTAGCGGTGACTTTTGCTTAGGACACCTCCCAACAT-TCTGTTGTTTATGATGTTGCAA 970
consensus_13852#3      ------------------------------------------------------------
consensus_13852#2      AGGAGCGGCGACTTTTATTTATGACACTCTCCGACGTGTGGGGAGATAGCGATGTAGAGA 542
                                                                                   

consensus_13852#0      TGCTACACGCCCGTGT-GTGCTTGGCAGTTTAATTACGTGATGCTCTTGTTTTGGCTTAA 1193
consensus_13852#1      TGCTACACGCCCGTGT-GTGCTTGGCAGTTTAATTACGTGATGCTCTTGTTTTGGCTTAG 1029
consensus_13852#3      ------------------------------------------------------------
consensus_13852#2      TGCTATCACCCTGTTTCGTCCTTGATTGGAGGCCCCTGT----CCACTGTTCTGCATCGT 598
                                                                                   

consensus_13852#0      AAAAAAAA---------------------------------------------------- 1201
consensus_13852#1      AGATATGATATATTTGCAACCATTGTTCAAA----------------------------- 1060
consensus_13852#3      ------------------------------------------------------------
consensus_13852#2      ATATGTCCTATGCTC-CGCGTATTGTGCTGCGTTTAGAGCGCTGCGTGTCGTGACACCTC 657
                                                                                   

consensus_13852#0      ------------------------------------------------------------
consensus_13852#1      ------------------------------------------------------------
consensus_13852#3      ------------------------------------------------------------
consensus_13852#2      GTGTCTCCCGCTCGGTGGCATGGGAGGTATGCGGTTCTGCCTCCAGGATCAACCTCCTAG 717
                                                                                   

consensus_13852#0      ------------------------------------------------------------
consensus_13852#1      ------------------------------------------------------------
consensus_13852#3      ------------------------------------------------------------
consensus_13852#2      CCACCACACCCCATTAGCGACCGAAGACTACGTAGGTCGCGTGTGCTTGACGGCGCCCAG 777
                                                                                   

consensus_13852#0      ---------------
consensus_13852#1      ---------------
consensus_13852#3      ---------------
consensus_13852#2      GGACGTATTGTGCAC 792