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Oryza sativa
cluster # 13853 cluster # 13853       Sequences # 14       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_13853#0 length = 781 sequences # 14  

consensusID : consensus_13853#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 14
consensus length = 781
fasta sequence
                              [CCCTTCGCCCCCCCGGTTCCGGCAAATCCAGTTTCGGGCAAACGTCAGCAATGCCGCCAGGATCAGGTTGCATGCAGGTTGTGCCGATTGAGGGGCATCAAGAATGTTCGAGACCCTCTTCCTACCTGCCACCGCTCACCGTGGAGGACCTCCTGAACAGATCGAGTACCTGCTCCGTTCCAAGTGGGTGCCCTGCCTCGAGTTCAGCAAGGTCGGATTCGTCTACCGTGAGAACCACA-G-AT-CCCCCGGATACTACGATGGCAGGTACTGGACCATGTGGAAGCTGCCCATGTTCGGGTGCACTGACGCCACCCAGGTGCTCAAGGAGCTCGAGGAGGCCAAGAAGGCGTACCCTGATGCATTCGTCCGTATCATCGGCTTCGACAACGTCAGGCAGGTGCAGCTCATCAGCTTCATCGCCTACAAGCCCCCGGGCTGCGAGGAGTCTGGTGGCAACTAAGCCGTCATCGTCATATATAGCCTTGTTTAATTGTTCATCTCTGATTCGATGATGTCTCCCACCTTGTTTCGTGTGTTCCCAGTTTGTTCATCGTCTTTTGATTTTACCGGCCGTGCTCTGCTTTTGTTTTTGTTTCACCTGATCTCTCTCTGACTTGATGTAAGAGTGGTATCTGCTACGACTATATGTTGTTGGGTGAGGCATATGTGAATGAAATATATG-GAAGCTCCGG-CT-AT-ATATATTT-----ATAC-AAAAAAAAAAAA-AAAAAACACTGTCATGCCG-TTACGTAGCGTATCGTTGACAGCAAGGGCGAAAAGTTTAAAC]

[+] EMBL BQ909084             [CCCTTCGCCCCCCCGGTTCCGGCAAATCCAGTTTCGGGCAAACGTCAGCAATGCCGCCAGGATCAGGTTGCATGCAGGTTGTGCCGATTGAGGGGCATCAAGAATGTTCGAGACCCTCTTCCTACCTGCCACCGCTCACCGTGGAGGACCTCCTGAACAGATCGAGTACCTACTCCGTTCCAAGTGGGTGCCCTGTCTCGAGTTCAGCAAGGTCGGATTTGTCTACCGTGAGAACCACA G GT CCCCCGGATACTACGACGGCAGGTACTGGACCATGTGGAAGCTGCCCATGTTTGGATGCACCGACGCCACCCAGGTGCTCAAGGAGCTCGAGGAGGCCAAGAAGGCGTACCCTGATGCATTCGTCCGTATCATCGGCTTCGACAACGTCAGGCAGGTGCAGCTCATCAGCTTCATCGCCTACAAGCCCCCGGGCTGCGAGGAGTCTGGTGGCAACTAAGCCGTCATCGTCATATATAGCCTCGTTTAATTGTTCATCTCTGATTCGATGATGTCTCCCACCTTGTTTCGTGTGTTCCCAGTTTGTTCATCGTCTTTTGATTTTACCGGCCGTGCTCTGCTTTTGTTTTTGTTTCACCTGATCTCTCTCTGACTTGATGTAAGAGTGGTATCTGCTACGACTATATGTTGATGGGTGAGGCATATGTGAATGAAATCTATGCCNAGCTCCGG CT AT ATATATTT     ATAC AAAAA                                                                      ]
[-] EMBL CF299206             [                                                                                                                                                                   GAGTACCTGCTCCGTTCCAAGTGGGTGCCCTGCCTCGAGTTCAGCAAGGTCGGATTCGTCTACCGTGAGAACCACA G ATCCCCCCGGATACTACGATGGCAGGTACTGGACCATGTGGAAGCTGCCCATGTTCGGGTGCACTGACGCCACCCAGGTGCTCAAGGAGCTCGAGGAGGCCAAGAAGGCGTACCCTGATGCATTCGTCCGTATCATCGGCTTCGACAACGTCAGGCAGGTGCAGCTCATCAGCTTCATCGCCTACAAGCCCCCGGGCTGCGAGGAGTCTGGTGGCAACTAAGCCGTCATCGTCATATATAGCCTTGTTTAATTGTTCATCTCTGATTCGATGATGTCTCCCACCTTGTTTCGTGTGTTCCCAGTTTGTTCATCGTCTTTTGATTTTACCGGCCGTGCTCTGCTTTTGTTTTTGTTTCACCTGATCTCTCTCTGACTTGATGTAAGAGTGGTATCTGCTACGACTATATGTTGTTGGGTGAGGCATATGTGAATGAAATATATG GAAGCTCCGG CTNAT ATATATTT           AAAAAAAAAAA AAAAAACAC ATCATGCCG TTACGTAGCGTATCGTTGACAGCAAGGGCGAAAAGTTTAAAC]
[-] EMBL CF299094             [                                                                                                                                                                      TACCTGCTCCGTTCCAAGTGGGTGCCCTGCCTCGAGTTCAGCAAGGTCGGATTCGTCTACCGTGAGAACCACAGG AT CCCCCGGATACTACGATGGCAGGTACTGGACCATGTGGAAGCTGCCCATGTTCGGGTGCACTGACGCCACCCAGGTGCTCAAGGAGCTCGAGGAGGCCAAGAAGGCGTACCCTGATGCATTCGTCCGTATCATCGGCTTCGACAACGTCAGGCAGGTGCAGCTCATCAGCTTCATCGCCTACAAGCCCCCGGGCTGCGAGGAGTCTGGTGGCAACTAAGCCGTCATCGTCATATATAGCCTTGTTTAATTGTTCATCTCTGATTCGATGATGTCTCCCACCTTGTTTCGTGTGTTCCCAGTTTGTTCATCGTCTTTTGATTTTACCGGCCGTGCTCTGCTTTTGTTTTTGTTTCACCTGATCTCTCTCTGACTTGATGTAAGAGTGGTATCTGCTACGACTATATGTTGTTGGGTGAGGCATATGTGAATGAAATATATG GAAGCTCCGG CT AT  TATA        A AA AAAAAAAAAAAA AAAAAACACTGT ATGCCG TTACGTAGCGTATC                            ]
[-] EMBL CF337849             [                                                                                                                                                                        CCTGCTCCGTTCCAAGTGGGTGCCCTGCCTCGAGTTCAGCAAGGTCGGATTCGTCTACCGTGAGAACCACA GNAT CCCCCGGATACTACGATGGCAGGTACTGGACCATGTGGAAGCTGCCCATGTTCGGGTGCACTGACGCCACCCAGGTGCTCAAGGAGCTCGAGGAGGCCAAGAAGGCGTACCCTGATGCATTCGTCCGTATCATCGGCTTCGACAACGTCAGGCAGGTGCAGCTCATCAGCTTCATCGCCTACAAGCCCCCGGGCTGCGAGGAGTCTGGTGGCAACTAAGCCGTCATCGTCATATATAGCCTTGTTTAATTGTTCATCTCTGATTCGATGATGTCTCCCACCTTGTTTCGTGTGTTCCCAGTTTGTTCATCGTCTTTTGATTTTACCGGCCGTGCTCTGCTTTTGTTTTTGTTTCACCTGATCTCTCTCTGACTTGATGTAAGAGTGGTATCTGCTACGACTATATGTTGTTGGGTGAGGCATATGTGAATGAAATATATG GAAGCTCCGG CTNAT ATATATTT     AAAA AAAAAAAAAAAACAAAAAACACTGTCATGCCGTTTACGTAG                                  ]
[-] EMBL CF292713             [                                                                                                                                                                        CCTGCTCCGTTCCAAGTGGGTGCCCTGCCTCGAGTTCAGCAAGGTCGGATTCGTCTACCGTGAGAACCACA G AT CCCCCGGATACTACGATGGCAGGTACTGGACCATGTGGAAGCTGCCCATGTTCGGGTGCACTGACGCCACCCAGGTGCTCAAGGAGCTCGAGGAGGCCAAGAAGGCGTACCCTGATGCATTCGTCCGTATCATCGGCTTCGACAACGTCAGGCAGGTGCAGCTCATCAGCTTCATCGCCTACAAGCCCCCGGGCTGCGAGGAGTCTGGTGGCAACTAAGCCGTCATCGTCATATATAGCCTTGTTTAATTGTTCATCTCTGATTCGATGATGTCTCCCACCTTGTTTCGTGTGTTCCCAGTTTGTTCATCGTCTTTTGATTTTACCGGCCGTGCTCTGCTTTTGTTTTTGTTTCACCTGATCTCTCTCTGACTTGATGTAAGAGTGGTATCTGCTACGACTATATGTTGTTGGGTGAGGCATATGTGAATGAAATATATG GAAGCTCCGG CT ATAATATATTT     ATAC  AAAAAAAAAAA AAAAAACACTGTCATGCCG TGACGTAG                                  ]
[-] EMBL CF295761             [                                                                                                                                                                        CCTGCTCCGTTCCAAGTGGGTGCCCTGCCTCGAGTTCAGCAAGGTCGGATTCGTCTACCGTGAGAACCACA G AT CCCCCGGATACTACGATGGCAGGTACTGGACCATGTGGAAGCTGCCCATGTTCGGGTGCACTGACGCCACCCAGGTGCTCAAGGAGCTCGAGGAGGCCAAGAAGGCGTACCCTGATGCATTCGTCCGTATCATCGGCTTCGACAACGTCAGGCAGGTGCAGCTCATCAGCTTCATCGCCTACAAGCCCCCGGGCTGCGAGGAGTCTGGTGGCAACTAAGCCGTCATCGTCATATATAGCCTTGTTTAATTGTTCATCTCTGATTCGATGATGTCTCCCACCTTGTTTCGTGTGTTCCCAGTTTGTTCATCGTCTTTTGATTTTACCGGCCGTGCTCTGCTTTTGTTTTTGTTTCACCTGATCTCTCTCTGACTTGATGTAAGAGTGGTATCTGCTACGACTATATGTTGTTGGGTGAGGCATATGTGAATGAAATATA G GAAGCTCCGC CC AT ATATATTT          AAAAAAAAAAAA AAAAAACACTGTCATGCCG TGACGTAG                                  ]
[-] EMBL CF296962             [                                                                                                                                                                                    CAAGTGGGTGCCCTGCCTCGAGTTCAGCAAGGTCGGATTCGTCTACCGTGAGAACCACA G AT CCCCCGGATACTACGATGGCAGGTACTGGACCATGTGGAAGCTGCCCATGTTCGGGTGCACTGACGCCACCCAGGTGCTCAAGGAGCTCGAGGAGGCCAAGAAGGCGTACCCTGATGCATTCGTCCGTATCATCGGCTTCGACAACGTCAGGCAGGTGCAGCTCATCAGCTTCATCGCCTACAAGCCCCCGGGCTGCGAGGAGTCTGGTGGCAANTAAGCCGTCATCGTCATATATAGCCTTGTTTAATTGTTCATCTCTGATTCGATGATGTCTCCCCCCTTGTTTCGTGTGTTCCCAGTTTGTTCATCGTCTTTTGATTTTACCGGCCGTGCTCTGCTTTTGTTTTTGTTTCACCTGATCTCTCTCTGACTTGATGTAAGAGTGGTATCTGCTACGACTATATGTTGTTGGGTGAGGCATATGTGAATGAAATATATG GAAGCTCCGGCCT AT ATATATTT     ATACAAAAAAAAAAAAA AAAAAACACTGTCATGCCG TGACGTAGC                                 ]
[-] EMBL CF295561             [                                                                                                                                                                                    CAAGTGGGTGCCCTGCCTCGAGTTCAGCAAGGTCGGATTCGTCTACCGTGAGAACCACA G AT CCCCCGGATACTACGATGGCAGGTACTGGACCATGTGGAAGCTGCCCATGTTCGGGTGCACTGACGCCACCCAGGTGCTCAAGGAGCTCGAGGAGGCCAAGAAGGCGTACCCTGATGCATTCGTCCGTATCATCGGCTTCGACAACGTCAGGCAGGTGCAGCTCATCAGCTTCATCGCCTACAAGCCCCCGGGCTGCGAGGAGTCTGGTGGCAACTAAGCCGTCATCGTCATATATAGCCTTGTTTAATTGTTCATCTCTGATTCGATGATGTCTCCCCCCTTGTTTCGTGTGTTCCCAGTTTGTTCATCGTCTTTTGATTTTACCGGCCGTGCTCTGCTTTTGTTTTTGTTTCACCTGATCTCTCTCTGACTTGATGTAAGAGTGGTATCTGCTACGACTATATGTTGTTGGGTGAGGCATATGTGAATGAAATATATG GAAGCTCCGGCCT AT ATATATTT     ATAC AAAAAAAAAAAA AAAAAACACTGTCATGCCG GTACGTA                                   ]
[-] EMBL CF298743             [                                                                                                                                                                                                                                                               CTACGATGGCAGGTACTGGACCATGTGGAAGCTGCCCATGTTCGGGTGCACTGACGCCACCCAGGTGCTCAAGGAGCTCGAGGAGGCCAAGAAGGCGTACCCTGATGCATTCGTCCGTATCATCGGCTTCGACAACGTCAGGCAGGTGCAGCTCATCAGCTTCATCGCCTACAAGCCCCCGGGCTGCGAGGAGTTTGGTGGCAACTAAGCCGTCATCGTCATATATAGCCTTGTTTAATTGTTCATCTCTGATTCGATGATGTCTCCCCCCTTGTTTCGTGTGTTCCCAGTTTGTTCATCGTCTTTTGATTTTACCGGCCGTGCTCTGCTTTTGTTTTTGTTTCACCTGATCTCTCTCTGACTTGATGTAAGAGTGGTATCTGCTACGACTATATGTTGTTGGGTGAGGCATATGTGAATGAAATATATG GAAGCTCCGG GT  T ATATATTTAAAAAAAAA AAAAAAAAAAAA AAAAAACACTGTCATGCCG TTA GTAGCGTATC                            ]
[-] EMBL CF297048             [                                                                                                                                                                                                                                                               CTACGATGGCAGGTACTGGACCATGTGGAAGCTGCCCATGTCCGGGTGCACTGACGCCACCCAGGTGCTCAAGGAGCTCGAGGAGGCCAAGAAGGCGTACCCTGATGCATTCGTCCGTATCATCGGCTTCGACAACGTCAGGCAGGTGCAGCTCATCAGCTTCATCGCCTACAAGCCCCCGGGCTGCGAGGAGTCTGGTGGCAACTAAGCCGTCATCGTCATATATAGCCTTGTTTAATTGTTCATCTCTGATTCGATGATGTCTCCCCCCTTGTTTCGTGTGTTCCCAGTTTGTTCATCGTCTTTTGATTTTACCGGCCGTGCTCTGCTTTTGTTTTTGTTTCACCTGATCTCTCTCTGACTTGATGTAAGAGTGGTATCTGCTACGACTATATGTTGTTGGGTGAGGCATATGTGAATGAAATATATG GAAGCTCCGGCCT AT ATATATTT     ATAC   AAAAAAAAAA AAAAAACACTGTCATGCCG TGACGTAGCG                                ]
[-] EMBL CF300228             [                                                                                                                                                                                                                                                                TACGATGGCAGGTACTGGACCATGTGGAAGCTGCCCATGTTCGGGTGCACTGACGCCACCCAGGTGCTCAAGGAGCTCGAGGAGGCCAAGAAGGCGTACCCTGATGCATTCGTCCGTATCATCGGCTTCGACAACGTCAGGCAGGTGCAGCTCATCAGCTTCATCGCCTACAAGCCCCCGGGCTGCGAGGAGTCTGGTGGCAACTAAGCCGTCATCGTCATATATAGCCTTGTTTAATTGTTCATCTCTGATTCGATGATGTCTCCCACCTTGTTTCGTGTGTTCCCAGTTTGTTCATCGTCTTTTGATTTTACCGGCCGTGCTCTGCTTTTGTTTTTGTTTCACCTGATCTCTCTCTGACTTGATGTAAGAGTGGTATCTGCTACGACTATATGTTGTTGGGTGAGGCATATGTGAATGAAATATATG GAAGCTCCGG CTNAT ATATATTT     ATCC AAAAAAAAAAAA AAAAAACA AGTCATGCCG TTACGTAGCGTATCGTTGACAG                    ]
[-] EMBL CF281567             [                                                                                                                                                                                                                                                                  CGATGGCAGGTACTGGACCATGTGGAAGCTGCCCGTGTTCGGGTGCACTGACGCCACCCAGGTGCTCAAGGAGCTCGAGGAGGCCAAGAAGGCGTACCCTGATGCATTCGTCCGTATCATCGGCTTCGACAACGTCAGGCAGGTGCAGCTCATCAGCTTCATCGCCTACAAGCCCCCGGGCTGCGAGGAGTCTGGTGGCAACTAAGCCGTCATCGTCATATATAGCCTTGTTTAATTGTTCATCTCTGATTCGATGATGTCTCCCACCTTGTTTCGTGTGTTCCCAGTTTGTTCATCGTCTTTTGATTTAACCGGCCGTGCTCTGCTTTTGTTTTTGTTTCACGAGATCTCTCTCTGACTTGATGTAAGAGTGGTATCTGCTACGACTATATGTTGTTGGGTCAGGCATATGTGAATGAAATATATG GAAGCTCCGG CT AT ATATATTTAAAA AAAA AAAAAAAAAAAA AAAAAACACTGTCATGCCG TCACGTAGCGCATGGTTGACAGCAAGGGCGAAtt        ]
[-] EMBL CF295866             [                                                                                                                                                                                                                                                                  CGATGGCAGGTACTGGACCATGTGGAAGCTGCCCATGTTCGGGTGCACTGACGCCACCCAGGTGCTCAAGGAGCTCGAGGAGGCCAAGAAGGCGTACCCTGATGCATTCGTCCGTATCATCGGCTTCGACAACGTCAGGCAGGTGCAGCTCATCAGCTTCATCGCCTACAAGCCCCCGGGCTGCGAGGAGTCTGGTGGCAACTAAGCCGTCATCGTCATATATAGCCTTGTTTAATTGTTCATCTCTGATTCGATGATGTCTCCCACCTTGTTTCGTGTGTTCCCAGTTTGTTCATCGTCTTATAAAATTACCGGCCGTGCTCTGCTTTTGTTTTTGTTTCACCTAATCTCTCTATGACTTGATGTAAGAGTGGTATCTGCTACGACTATATGTTGTTGGGTGAGGCATATGTGAATGAAATATA G GAAGCTCCGG CT AT ATATATTT     A    AAAAAAAAAAAA AAAAAACACTGTCATGCCG TGACGT                                    ]
[-] EMBL CF302718             [                                                                                                                                                                                                                                                                                   CCATGTGGAAGCTGCCCATGTTCGGGTGCACTGACGCCACCCAGGTGCTCAAGGAGCTCGAGGAGGCCAAGAAGGCGTACCCTGATGCATTCGTCCGTATCATCGGCTTCGACAACGTCAGGCAGGTGCAGCTCATCAGCTTCATCGCCTACAAGCCCCCGGGCTGCGAGGAGTCTGGTGGCAACTAAGCCGTCATCGTCATATATAGCCTTGTTTAATTGTTCATCTCTGATTCGATGATGTCTCCCACCTTGTTTCGTGTGTTCCCAGTTTGTTCATCGTCTTTTGATTTTACCGGCCGTGCTCTGCTTTTGTTTTTGTTTCACCTGATCTCTCTCTGACTTGATGTAAGAGTGGTATCTGCTACGACTATATGTTGTTGGGTGAGGCATATGTGAATGAAATATATG GAAGCTCCGG CT AT ATATATTT     ATTC AAAAAAAAAAAA AAAAAAAAATGTCATGCCG TTACGTAGCGTAT                             ]


>consensus_13853#0 CCCTTCGCCCCCCCGGTTCCGGCAAATCCAGTTTCGGGCAAACGTCAGCAATGCCGCCAG GATCAGGTTGCATGCAGGTTGTGCCGATTGAGGGGCATCAAGAATGTTCGAGACCCTCTT CCTACCTGCCACCGCTCACCGTGGAGGACCTCCTGAACAGATCGAGTACCTGCTCCGTTC CAAGTGGGTGCCCTGCCTCGAGTTCAGCAAGGTCGGATTCGTCTACCGTGAGAACCACAG ATCCCCCGGATACTACGATGGCAGGTACTGGACCATGTGGAAGCTGCCCATGTTCGGGTG CACTGACGCCACCCAGGTGCTCAAGGAGCTCGAGGAGGCCAAGAAGGCGTACCCTGATGC ATTCGTCCGTATCATCGGCTTCGACAACGTCAGGCAGGTGCAGCTCATCAGCTTCATCGC CTACAAGCCCCCGGGCTGCGAGGAGTCTGGTGGCAACTAAGCCGTCATCGTCATATATAG CCTTGTTTAATTGTTCATCTCTGATTCGATGATGTCTCCCACCTTGTTTCGTGTGTTCCC AGTTTGTTCATCGTCTTTTGATTTTACCGGCCGTGCTCTGCTTTTGTTTTTGTTTCACCT GATCTCTCTCTGACTTGATGTAAGAGTGGTATCTGCTACGACTATATGTTGTTGGGTGAG GCATATGTGAATGAAATATATGGAAGCTCCGGCTATATATATTTATACAAAAAAAAAAAA AAAAAACACTGTCATGCCGTTACGTAGCGTATCGTTGACAGCAAGGGCGAAAAGTTTAAA C



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)