These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13853#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 14 consensus length = 781 fasta sequence [CCCTTCGCCCCCCCGGTTCCGGCAAATCCAGTTTCGGGCAAACGTCAGCAATGCCGCCAGGATCAGGTTGCATGCAGGTTGTGCCGATTGAGGGGCATCAAGAATGTTCGAGACCCTCTTCCTACCTGCCACCGCTCACCGTGGAGGACCTCCTGAACAGATCGAGTACCTGCTCCGTTCCAAGTGGGTGCCCTGCCTCGAGTTCAGCAAGGTCGGATTCGTCTACCGTGAGAACCACA-G-AT-CCCCCGGATACTACGATGGCAGGTACTGGACCATGTGGAAGCTGCCCATGTTCGGGTGCACTGACGCCACCCAGGTGCTCAAGGAGCTCGAGGAGGCCAAGAAGGCGTACCCTGATGCATTCGTCCGTATCATCGGCTTCGACAACGTCAGGCAGGTGCAGCTCATCAGCTTCATCGCCTACAAGCCCCCGGGCTGCGAGGAGTCTGGTGGCAACTAAGCCGTCATCGTCATATATAGCCTTGTTTAATTGTTCATCTCTGATTCGATGATGTCTCCCACCTTGTTTCGTGTGTTCCCAGTTTGTTCATCGTCTTTTGATTTTACCGGCCGTGCTCTGCTTTTGTTTTTGTTTCACCTGATCTCTCTCTGACTTGATGTAAGAGTGGTATCTGCTACGACTATATGTTGTTGGGTGAGGCATATGTGAATGAAATATATG-GAAGCTCCGG-CT-AT-ATATATTT-----ATAC-AAAAAAAAAAAA-AAAAAACACTGTCATGCCG-TTACGTAGCGTATCGTTGACAGCAAGGGCGAAAAGTTTAAAC] [+] EMBL BQ909084 [CCCTTCGCCCCCCCGGTTCCGGCAAATCCAGTTTCGGGCAAACGTCAGCAATGCCGCCAGGATCAGGTTGCATGCAGGTTGTGCCGATTGAGGGGCATCAAGAATGTTCGAGACCCTCTTCCTACCTGCCACCGCTCACCGTGGAGGACCTCCTGAACAGATCGAGTACCTACTCCGTTCCAAGTGGGTGCCCTGTCTCGAGTTCAGCAAGGTCGGATTTGTCTACCGTGAGAACCACA G GT CCCCCGGATACTACGACGGCAGGTACTGGACCATGTGGAAGCTGCCCATGTTTGGATGCACCGACGCCACCCAGGTGCTCAAGGAGCTCGAGGAGGCCAAGAAGGCGTACCCTGATGCATTCGTCCGTATCATCGGCTTCGACAACGTCAGGCAGGTGCAGCTCATCAGCTTCATCGCCTACAAGCCCCCGGGCTGCGAGGAGTCTGGTGGCAACTAAGCCGTCATCGTCATATATAGCCTCGTTTAATTGTTCATCTCTGATTCGATGATGTCTCCCACCTTGTTTCGTGTGTTCCCAGTTTGTTCATCGTCTTTTGATTTTACCGGCCGTGCTCTGCTTTTGTTTTTGTTTCACCTGATCTCTCTCTGACTTGATGTAAGAGTGGTATCTGCTACGACTATATGTTGATGGGTGAGGCATATGTGAATGAAATCTATGCCNAGCTCCGG CT AT ATATATTT ATAC AAAAA ] [-] EMBL CF299206 [ GAGTACCTGCTCCGTTCCAAGTGGGTGCCCTGCCTCGAGTTCAGCAAGGTCGGATTCGTCTACCGTGAGAACCACA G ATCCCCCCGGATACTACGATGGCAGGTACTGGACCATGTGGAAGCTGCCCATGTTCGGGTGCACTGACGCCACCCAGGTGCTCAAGGAGCTCGAGGAGGCCAAGAAGGCGTACCCTGATGCATTCGTCCGTATCATCGGCTTCGACAACGTCAGGCAGGTGCAGCTCATCAGCTTCATCGCCTACAAGCCCCCGGGCTGCGAGGAGTCTGGTGGCAACTAAGCCGTCATCGTCATATATAGCCTTGTTTAATTGTTCATCTCTGATTCGATGATGTCTCCCACCTTGTTTCGTGTGTTCCCAGTTTGTTCATCGTCTTTTGATTTTACCGGCCGTGCTCTGCTTTTGTTTTTGTTTCACCTGATCTCTCTCTGACTTGATGTAAGAGTGGTATCTGCTACGACTATATGTTGTTGGGTGAGGCATATGTGAATGAAATATATG GAAGCTCCGG CTNAT ATATATTT AAAAAAAAAAA AAAAAACAC ATCATGCCG TTACGTAGCGTATCGTTGACAGCAAGGGCGAAAAGTTTAAAC] [-] EMBL CF299094 [ TACCTGCTCCGTTCCAAGTGGGTGCCCTGCCTCGAGTTCAGCAAGGTCGGATTCGTCTACCGTGAGAACCACAGG AT CCCCCGGATACTACGATGGCAGGTACTGGACCATGTGGAAGCTGCCCATGTTCGGGTGCACTGACGCCACCCAGGTGCTCAAGGAGCTCGAGGAGGCCAAGAAGGCGTACCCTGATGCATTCGTCCGTATCATCGGCTTCGACAACGTCAGGCAGGTGCAGCTCATCAGCTTCATCGCCTACAAGCCCCCGGGCTGCGAGGAGTCTGGTGGCAACTAAGCCGTCATCGTCATATATAGCCTTGTTTAATTGTTCATCTCTGATTCGATGATGTCTCCCACCTTGTTTCGTGTGTTCCCAGTTTGTTCATCGTCTTTTGATTTTACCGGCCGTGCTCTGCTTTTGTTTTTGTTTCACCTGATCTCTCTCTGACTTGATGTAAGAGTGGTATCTGCTACGACTATATGTTGTTGGGTGAGGCATATGTGAATGAAATATATG GAAGCTCCGG CT AT TATA A AA AAAAAAAAAAAA AAAAAACACTGT ATGCCG TTACGTAGCGTATC ] [-] EMBL CF337849 [ CCTGCTCCGTTCCAAGTGGGTGCCCTGCCTCGAGTTCAGCAAGGTCGGATTCGTCTACCGTGAGAACCACA GNAT CCCCCGGATACTACGATGGCAGGTACTGGACCATGTGGAAGCTGCCCATGTTCGGGTGCACTGACGCCACCCAGGTGCTCAAGGAGCTCGAGGAGGCCAAGAAGGCGTACCCTGATGCATTCGTCCGTATCATCGGCTTCGACAACGTCAGGCAGGTGCAGCTCATCAGCTTCATCGCCTACAAGCCCCCGGGCTGCGAGGAGTCTGGTGGCAACTAAGCCGTCATCGTCATATATAGCCTTGTTTAATTGTTCATCTCTGATTCGATGATGTCTCCCACCTTGTTTCGTGTGTTCCCAGTTTGTTCATCGTCTTTTGATTTTACCGGCCGTGCTCTGCTTTTGTTTTTGTTTCACCTGATCTCTCTCTGACTTGATGTAAGAGTGGTATCTGCTACGACTATATGTTGTTGGGTGAGGCATATGTGAATGAAATATATG GAAGCTCCGG CTNAT ATATATTT AAAA AAAAAAAAAAAACAAAAAACACTGTCATGCCGTTTACGTAG ] [-] EMBL CF292713 [ CCTGCTCCGTTCCAAGTGGGTGCCCTGCCTCGAGTTCAGCAAGGTCGGATTCGTCTACCGTGAGAACCACA G AT CCCCCGGATACTACGATGGCAGGTACTGGACCATGTGGAAGCTGCCCATGTTCGGGTGCACTGACGCCACCCAGGTGCTCAAGGAGCTCGAGGAGGCCAAGAAGGCGTACCCTGATGCATTCGTCCGTATCATCGGCTTCGACAACGTCAGGCAGGTGCAGCTCATCAGCTTCATCGCCTACAAGCCCCCGGGCTGCGAGGAGTCTGGTGGCAACTAAGCCGTCATCGTCATATATAGCCTTGTTTAATTGTTCATCTCTGATTCGATGATGTCTCCCACCTTGTTTCGTGTGTTCCCAGTTTGTTCATCGTCTTTTGATTTTACCGGCCGTGCTCTGCTTTTGTTTTTGTTTCACCTGATCTCTCTCTGACTTGATGTAAGAGTGGTATCTGCTACGACTATATGTTGTTGGGTGAGGCATATGTGAATGAAATATATG GAAGCTCCGG CT ATAATATATTT ATAC AAAAAAAAAAA AAAAAACACTGTCATGCCG TGACGTAG ] [-] EMBL CF295761 [ CCTGCTCCGTTCCAAGTGGGTGCCCTGCCTCGAGTTCAGCAAGGTCGGATTCGTCTACCGTGAGAACCACA G AT CCCCCGGATACTACGATGGCAGGTACTGGACCATGTGGAAGCTGCCCATGTTCGGGTGCACTGACGCCACCCAGGTGCTCAAGGAGCTCGAGGAGGCCAAGAAGGCGTACCCTGATGCATTCGTCCGTATCATCGGCTTCGACAACGTCAGGCAGGTGCAGCTCATCAGCTTCATCGCCTACAAGCCCCCGGGCTGCGAGGAGTCTGGTGGCAACTAAGCCGTCATCGTCATATATAGCCTTGTTTAATTGTTCATCTCTGATTCGATGATGTCTCCCACCTTGTTTCGTGTGTTCCCAGTTTGTTCATCGTCTTTTGATTTTACCGGCCGTGCTCTGCTTTTGTTTTTGTTTCACCTGATCTCTCTCTGACTTGATGTAAGAGTGGTATCTGCTACGACTATATGTTGTTGGGTGAGGCATATGTGAATGAAATATA G GAAGCTCCGC CC AT ATATATTT AAAAAAAAAAAA AAAAAACACTGTCATGCCG TGACGTAG ] [-] EMBL CF296962 [ CAAGTGGGTGCCCTGCCTCGAGTTCAGCAAGGTCGGATTCGTCTACCGTGAGAACCACA G AT CCCCCGGATACTACGATGGCAGGTACTGGACCATGTGGAAGCTGCCCATGTTCGGGTGCACTGACGCCACCCAGGTGCTCAAGGAGCTCGAGGAGGCCAAGAAGGCGTACCCTGATGCATTCGTCCGTATCATCGGCTTCGACAACGTCAGGCAGGTGCAGCTCATCAGCTTCATCGCCTACAAGCCCCCGGGCTGCGAGGAGTCTGGTGGCAANTAAGCCGTCATCGTCATATATAGCCTTGTTTAATTGTTCATCTCTGATTCGATGATGTCTCCCCCCTTGTTTCGTGTGTTCCCAGTTTGTTCATCGTCTTTTGATTTTACCGGCCGTGCTCTGCTTTTGTTTTTGTTTCACCTGATCTCTCTCTGACTTGATGTAAGAGTGGTATCTGCTACGACTATATGTTGTTGGGTGAGGCATATGTGAATGAAATATATG GAAGCTCCGGCCT AT ATATATTT ATACAAAAAAAAAAAAA AAAAAACACTGTCATGCCG TGACGTAGC ] [-] EMBL CF295561 [ CAAGTGGGTGCCCTGCCTCGAGTTCAGCAAGGTCGGATTCGTCTACCGTGAGAACCACA G AT CCCCCGGATACTACGATGGCAGGTACTGGACCATGTGGAAGCTGCCCATGTTCGGGTGCACTGACGCCACCCAGGTGCTCAAGGAGCTCGAGGAGGCCAAGAAGGCGTACCCTGATGCATTCGTCCGTATCATCGGCTTCGACAACGTCAGGCAGGTGCAGCTCATCAGCTTCATCGCCTACAAGCCCCCGGGCTGCGAGGAGTCTGGTGGCAACTAAGCCGTCATCGTCATATATAGCCTTGTTTAATTGTTCATCTCTGATTCGATGATGTCTCCCCCCTTGTTTCGTGTGTTCCCAGTTTGTTCATCGTCTTTTGATTTTACCGGCCGTGCTCTGCTTTTGTTTTTGTTTCACCTGATCTCTCTCTGACTTGATGTAAGAGTGGTATCTGCTACGACTATATGTTGTTGGGTGAGGCATATGTGAATGAAATATATG GAAGCTCCGGCCT AT ATATATTT ATAC AAAAAAAAAAAA AAAAAACACTGTCATGCCG GTACGTA ] [-] EMBL CF298743 [ CTACGATGGCAGGTACTGGACCATGTGGAAGCTGCCCATGTTCGGGTGCACTGACGCCACCCAGGTGCTCAAGGAGCTCGAGGAGGCCAAGAAGGCGTACCCTGATGCATTCGTCCGTATCATCGGCTTCGACAACGTCAGGCAGGTGCAGCTCATCAGCTTCATCGCCTACAAGCCCCCGGGCTGCGAGGAGTTTGGTGGCAACTAAGCCGTCATCGTCATATATAGCCTTGTTTAATTGTTCATCTCTGATTCGATGATGTCTCCCCCCTTGTTTCGTGTGTTCCCAGTTTGTTCATCGTCTTTTGATTTTACCGGCCGTGCTCTGCTTTTGTTTTTGTTTCACCTGATCTCTCTCTGACTTGATGTAAGAGTGGTATCTGCTACGACTATATGTTGTTGGGTGAGGCATATGTGAATGAAATATATG GAAGCTCCGG GT T ATATATTTAAAAAAAAA AAAAAAAAAAAA AAAAAACACTGTCATGCCG TTA GTAGCGTATC ] [-] EMBL CF297048 [ CTACGATGGCAGGTACTGGACCATGTGGAAGCTGCCCATGTCCGGGTGCACTGACGCCACCCAGGTGCTCAAGGAGCTCGAGGAGGCCAAGAAGGCGTACCCTGATGCATTCGTCCGTATCATCGGCTTCGACAACGTCAGGCAGGTGCAGCTCATCAGCTTCATCGCCTACAAGCCCCCGGGCTGCGAGGAGTCTGGTGGCAACTAAGCCGTCATCGTCATATATAGCCTTGTTTAATTGTTCATCTCTGATTCGATGATGTCTCCCCCCTTGTTTCGTGTGTTCCCAGTTTGTTCATCGTCTTTTGATTTTACCGGCCGTGCTCTGCTTTTGTTTTTGTTTCACCTGATCTCTCTCTGACTTGATGTAAGAGTGGTATCTGCTACGACTATATGTTGTTGGGTGAGGCATATGTGAATGAAATATATG GAAGCTCCGGCCT AT ATATATTT ATAC AAAAAAAAAA AAAAAACACTGTCATGCCG TGACGTAGCG ] [-] EMBL CF300228 [ TACGATGGCAGGTACTGGACCATGTGGAAGCTGCCCATGTTCGGGTGCACTGACGCCACCCAGGTGCTCAAGGAGCTCGAGGAGGCCAAGAAGGCGTACCCTGATGCATTCGTCCGTATCATCGGCTTCGACAACGTCAGGCAGGTGCAGCTCATCAGCTTCATCGCCTACAAGCCCCCGGGCTGCGAGGAGTCTGGTGGCAACTAAGCCGTCATCGTCATATATAGCCTTGTTTAATTGTTCATCTCTGATTCGATGATGTCTCCCACCTTGTTTCGTGTGTTCCCAGTTTGTTCATCGTCTTTTGATTTTACCGGCCGTGCTCTGCTTTTGTTTTTGTTTCACCTGATCTCTCTCTGACTTGATGTAAGAGTGGTATCTGCTACGACTATATGTTGTTGGGTGAGGCATATGTGAATGAAATATATG GAAGCTCCGG CTNAT ATATATTT ATCC AAAAAAAAAAAA AAAAAACA AGTCATGCCG TTACGTAGCGTATCGTTGACAG ] [-] EMBL CF281567 [ CGATGGCAGGTACTGGACCATGTGGAAGCTGCCCGTGTTCGGGTGCACTGACGCCACCCAGGTGCTCAAGGAGCTCGAGGAGGCCAAGAAGGCGTACCCTGATGCATTCGTCCGTATCATCGGCTTCGACAACGTCAGGCAGGTGCAGCTCATCAGCTTCATCGCCTACAAGCCCCCGGGCTGCGAGGAGTCTGGTGGCAACTAAGCCGTCATCGTCATATATAGCCTTGTTTAATTGTTCATCTCTGATTCGATGATGTCTCCCACCTTGTTTCGTGTGTTCCCAGTTTGTTCATCGTCTTTTGATTTAACCGGCCGTGCTCTGCTTTTGTTTTTGTTTCACGAGATCTCTCTCTGACTTGATGTAAGAGTGGTATCTGCTACGACTATATGTTGTTGGGTCAGGCATATGTGAATGAAATATATG GAAGCTCCGG CT AT ATATATTTAAAA AAAA AAAAAAAAAAAA AAAAAACACTGTCATGCCG TCACGTAGCGCATGGTTGACAGCAAGGGCGAAtt ] [-] EMBL CF295866 [ CGATGGCAGGTACTGGACCATGTGGAAGCTGCCCATGTTCGGGTGCACTGACGCCACCCAGGTGCTCAAGGAGCTCGAGGAGGCCAAGAAGGCGTACCCTGATGCATTCGTCCGTATCATCGGCTTCGACAACGTCAGGCAGGTGCAGCTCATCAGCTTCATCGCCTACAAGCCCCCGGGCTGCGAGGAGTCTGGTGGCAACTAAGCCGTCATCGTCATATATAGCCTTGTTTAATTGTTCATCTCTGATTCGATGATGTCTCCCACCTTGTTTCGTGTGTTCCCAGTTTGTTCATCGTCTTATAAAATTACCGGCCGTGCTCTGCTTTTGTTTTTGTTTCACCTAATCTCTCTATGACTTGATGTAAGAGTGGTATCTGCTACGACTATATGTTGTTGGGTGAGGCATATGTGAATGAAATATA G GAAGCTCCGG CT AT ATATATTT A AAAAAAAAAAAA AAAAAACACTGTCATGCCG TGACGT ] [-] EMBL CF302718 [ CCATGTGGAAGCTGCCCATGTTCGGGTGCACTGACGCCACCCAGGTGCTCAAGGAGCTCGAGGAGGCCAAGAAGGCGTACCCTGATGCATTCGTCCGTATCATCGGCTTCGACAACGTCAGGCAGGTGCAGCTCATCAGCTTCATCGCCTACAAGCCCCCGGGCTGCGAGGAGTCTGGTGGCAACTAAGCCGTCATCGTCATATATAGCCTTGTTTAATTGTTCATCTCTGATTCGATGATGTCTCCCACCTTGTTTCGTGTGTTCCCAGTTTGTTCATCGTCTTTTGATTTTACCGGCCGTGCTCTGCTTTTGTTTTTGTTTCACCTGATCTCTCTCTGACTTGATGTAAGAGTGGTATCTGCTACGACTATATGTTGTTGGGTGAGGCATATGTGAATGAAATATATG GAAGCTCCGG CT AT ATATATTT ATTC AAAAAAAAAAAA AAAAAAAAATGTCATGCCG TTACGTAGCGTAT ] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||