These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13862#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2074 fasta sequence [GCTTGACAAAGCAAAGAACTTCGTTGAGGAAAACAACATCAACCATGAGGCTATTGTTTGGAAGACGCTACTGTCAGCTTGTCGACTTCACCAGCACAACGAATATGCAAAATTGGCTTCTGAAAAATTGGTTCAACTGGAGCAATGCGATGCTGGATCATATGTTATGCTGTCAAACATATATGCAACCAACAACAAATGGCACGACACTTTTGAGCTTAGAGTTTCAATGCAGGAAAGGAAGGTCAGGAAGCAGCCTGGTCGATCTTGGATCCACCTGAAGAATACTGTGCATACATTTGTTGCAGGGGATGCGTCACACCCACAATCAGCTGAAATTTATGCTTACTTGGAGAAGCTGGTGGAGAGACTGAAGGAGATTGGGTACACAAGTAGAACTGATCTTGTTGTTCATGATGTAGAGGATGAACAAAGGGAAACAGCTCTTAAGTTCCACAGTGAGAAGCTGGCCATTGCATTTGGGATCATCAGCACTCCAAGTGGGACTCCACTTAGGATCTTCAAGAATCTGCGTGTTTGTGAGGATTGCCATGAAGCGATCAAGTACATAAGTCTGGCCACAGGTAGGGAAATAGTTGTTCGTGACTTGTATCGGTTTCATCATTTCAAGGATGCTAGTTGTTCTTGTGAGGATTTCTGGTGAAATTTTGTTGACCATTCATGATGACTAACTGAGTAACTGAAGATTGTTATGTACTGCGTCGTGCACGTGCATGGCTGTACTAGAGATTGTGGCTCAAATGTATATTGATTTAAGGAGAATTCCTTATTAGCCATCTGATGCCAAGTATATTCCTCATCTGCGGAGAAGCGCATTAACAGGCTACCTCACCTTGATGAGCCAGACATCCTCACCTCCACCTACGAACCATTATCATCGGCAGTCGGCATGGACTACTCGCCATTTAGCAAGGCTGTGGTGAGGCAGGCGGTGGATAACCTGGTGAAGGCCAGCAACTGGATCATCCTGATCCATGTCCTTCCCAGAGGAGCAGATGCCAGCCACAAGGAGCTCTGGAAGAGCACCGGCTCACACATGCAGAGGCATTGCAATTTTTCTGCTGCTTCTCTTGTTCAGCAAATTCTGACTGCTGCTTCTCTTGTTCAACAAATTCTGACGCAGAAAGCTTAACAGGGAGGTGTTGGGTCAACCCTGATAAGGAGGTACTAGCGATCCTGCAAGCTGAATCGAAGTCCAAGCAGGTAATGACTCAGCTTTGCCAGAAGATCACCCACCTTTGTATTTGGGTGGTTTGTGAGGAATTCTGCATAGGGGACAGGCGAATTATGCTTGATGGTTCTATAGTTGTAACAATCTGCAACTGCCTGGGCGTCTGTACAGACTATGCTTGAGGTTCACCATTCCATTTCCCATGCTGGCATTCTCATTTTTCTTGGTTAGGACAAGAGCTTCTTGACATTCATTGACAAGTGTATTGAAGGTTCTTATTTTGTAATGTCATAGTAAATTCCTTGTTTGGGGTCATGTCTGCAGTTTGCAAGGAGTCCAGGGAAGGTTCACACTTGAACCCAAGCAGTGGGCTGTTCCAACCAAATGAGAAGAAGGATGTGGTAACATCAACTGGCTAGCAATGGTTGGGATTCTCGCTGGTTACCTTTGTGATGGGGCCTCTTAAGATGTTAAAGCTCTATGCTGTTCCTTACATGATATTGTCATGTGGTTGGATTTTGTCACATACTTGCACCATCATGGCCATGAAGAAGCTTCCCTGGCACCATGGAAGAGTAAATAACATTATTAATGTTGTGGGATTGCTATTTGTCAATGATGCAAGGATGGCCACTAGGGTATAGTCCATTTTTGTTCAACATAGGGCATAGTCTAGTTTTGTTCAACATAGGGCATAGTCCATTTTTGTTTGCTAAATGGCAGAAGGTTTATTTGTTCAAACATAGGTTCTGCGTGTAAAAATTATTGAGTAGAGATTTATGCCTTTAAAGATAATTAGCTGAATTTCCCGTGCAACTAAACTAAATGATTATGTGAAAGTAGAATTGTATTTGACATACAACTCTTGCATCTATATATGTA] [+] EMBL AK103504 [GCTTGACAAAGCAAAGAACTTCGTTGAGGAAAACAACATCAACCATGAGGCTATTGTTTGGAAGACGCTACTGTCAGCTTGTCGACTTCACCAGCACAACGAATATGCAAAATTGGCTTCTGAAAAATTGGTTCAACTGGAGCAATGCGATGCTGGATCATATGTTATGCTGTCAAACATATATGCAACCAACAACAAATGGCACGACACTTTTGAGCTTAGAGTTTCAATGCAGGAAAGGAAGGTCAGGAAGCAGCCTGGTCGATCTTGGATCCACCTGAAGAATACTGTGCATACATTTGTTGCAGGGGATGCGTCACACCCACAATCAGCTGAAATTTATGCTTACTTGGAGAAGCTGGTGGAGAGACTGAAGGAGATTGGGTACACAAGTAGAACTGATCTTGTTGTTCATGATGTAGAGGATGAACAAAGGGAAACAGCTCTTAAGTTCCACAGTGAGAAGCTGGCCATTGCATTTGGGATCATCAGCACTCCAAGTGGGACTCCACTTAGGATCTTCAAGAATCTGCGTGTTTGTGAGGATTGCCATGAAGCGATCAAGTACATAAGTCTGGCCACAGGTAGGGAAATAGTTGTTCGTGACTTGTATCGGTTTCATCATTTCAAGGATGCTAGTTGTTCTTGTGAGGATTTCTGGTGAAATTTTGTTGACCATTCATGATGACTAACTGAGTAACTGAAGATTGTTATGTACTGCGTCGTGCACGTGCATGGCTGTACTAGAGATTGTGGCTCAAATGTATATTGATTTAAGGAGAATTCCTTATTAGCCATCTGATGCCAAGTATATTCCTCATCTGCGGAGAAGCGCATTAACAGGCTACCTCACCTTGATGAGCCAGACATCCTCACCTCCACCTACGAACCATTATCATCGGCAGTCGGCATGGACTACTCGCCATTTAGCAAGGCTGTGGTGAGGCAGGCGGTGGATAACCTGGTGAAGGCCAGCAACTGGATCATCCTGATCCATGTCCTTCCCAGAGGAGCAGATGCCAGCCACAAGGAGCTCTGGAAGAGCACCGGCTCACACATGCAGAGGCATTGCAATTTTTCTGCTGCTTCTCTTGTTCAGCAAATTCTGACTGCTGCTTCTCTTGTTCAACAAATTCTGACGCAGAAAGCTTAACAGGGAGGTGTTGGGTCAACCCTGATAAGGAGGTACTAGCGATCCTGCAAGCTGAATCGAAGTCCAAGCAGGTAATGACTCAGCTTTGCCAGAAGATCACCCACCTTTGTATTTGGGTGGTTTGTGAGGAATTCTGCATAGGGGACAGGCGAATTATGCTTGATGGTTCTATAGTTGTAACAATCTGCAACTGCCTGGGCGTCTGTACAGACTATGCTTGAGGTTCACCATTCCATTTCCCATGCTGGCATTCTCATTTTTCTTGGTTAGGACAAGAGCTTCTTGACATTCATTGACAAGTGTATTGAAGGTTCTTATTTTGTAATGTCATAGTAAATTCCTTGTTTGGGGTCATGTCTGCAGTTTGCAAGGAGTCCAGGGAAGGTTCACACTTGAACCCAAGCAGTGGGCTGTTCCAACCAAATGAGAAGAAGGATGTGGTAACATCAACTGGCTAGCAATGGTTGGGATTCTCGCTGGTTACCTTTGTGATGGGGCCTCTTAAGATGTTAAAGCTCTATGCTGTTCCTTACATGATATTGTCATGTGGTTGGATTTTGTCACATACTTGCACCATCATGGCCATGAAGAAGCTTCCCTGGCACCATGGAAGAGTAAATAACATTATTAATGTTGTGGGATTGCTATTTGTCAATGATGCAAGGATGGCCACTAGGGTATAGTCCATTTTTGTTCAACATAGGGCATAGTCTAGTTTTGTTCAACATAGGGCATAGTCCATTTTTGTTTGCTAAATGGCAGAAGGTTTATTTGTTCAAACATAGGTTCTGCGTGTAAAAATTATTGAGTAGAGATTTATGCCTTTAAAGATAATTAGCTGAATTTCCCGTGCAACTAAACTAAATGATTATGTGAAAGTAGAATTGTATTTGACATACAACTCTTGCATCTATATATGTA] consensusID : consensus_13862#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 934 fasta sequence [ACAAGTTCGCTATCAACAGGCGATATGTCACCCTATTTCTGTTGCTGTTCAACGACGTCCTTAAATAGGAGTACTTGTGCTACAAGCCTAACCCAGAGATAGCACCACAAATACCTCTCTTTTCTTTAGGTGTTTACTTCGACAGCTTCACCACCTTCGTTTACCCATTGCCATGGCGGCTGAGAAGCGAACCATTGGGCTCGGCATGGACTACTCGCCGTCGAGCAAGGCCGCGGCGAAGTGGGCGGTGGATAACCTGGTGAAGGCCGGCGACCGGATCATCCT-CGTCCATGTCCTT-CCCAAAGGAGCAGATGCCAGCCACAAGGAGCTC-TGGAAGAGCACCGGCTCACCTTTGATT-CCTCTGCTGGAGTTTA-TGGAGATGAACGTGCAGGCGAGGTA-TGGGATC-AACCCCGA-T-AAGGAGGTAC-TGGA-GATCCTGCAAGC-TGAATCCAAGT-CCAAGCAGG-TTGAAGTAC-TGGCAA-AAGTTTAC-TGGGGTGATGCAA-GGGAGAAACTC-TGTGAGGC-AG-TAGACGATC-TCAAGGTGAATACCTTTGTTCTTGGTTGCAGGGGACTAGGACCCTTGAAAAGGGCCCTACTTGGAAGTGTTAGCAACTATGTTGTCAACAATGCAACCTGCCCGGTTACTGTGGTGCGTGCACCAACCGTGTCAAATGCCTGATTCTATGCTACATGGGACTGCTGGAAATTGGAATGCTGGGCTTGTTTTGCTGTTCATCCATCTTTTAGCAGAGAACCTTCATCTGAGTTGGTGCCATTGCAAGGATTGGTCTCTGGCTCCTGCACTTAGCTTTTCCATGCTATTGGAATGTTATTAAGTTGAATCTTCGGTGTATTTCCTTCTGTTACTTCCTATGTATAGTTCATTACTACTGTTTAATGGTGAATGTTAAAGATTGCCAATGGTGTGCTTGCTTTAAAAAAA] [+] EMBL C97488 [ACAAGTTCGCTATCAACAGGCGATATGTCACCCTATTTCTGTTGCTGTTCAACGACGTCCTTAAATAGGAGTACTTGTGCTACAAGCCTAACCCAGAGATAGCACCACAAATACCTCTCTTTTCTTTAGGTGTTTACTTCGACAGCTTCACCACCTTCGTTTACCCATTGCCATGGCGGCTGAGAAGCGAACCATTGGGCTCGGCATGGACTACTCGCCGTCGAGCAAGGCCGCGGCGAAGTGGGCGGTGGATAACCTGGTGAAGGCCGGCGACCGGATCATCCT CGTCCATGTCCTT CCCAAAGGAGCAGATGCCAGCCACAAGGAGCTCTTGGAAGAGCACCGGCTCANCTTTGATT CCTCTGCTGGAGTTTATTGGNGATGAACGTNCAGGCGAGGTA TTGGGTCNAACCCCGATT AAGG ] [+] EMBL AK108499 [ GTCACCCTATTTCTGTTGCTGTTCAACGACGTCCTTAAATAGGAGTACTTGTGCTACAAGCCTAACCCAGAGATAGCACCACAAATACCTCTCTTTTCTTTAGGTGTTTACTTCGACAGCTTCACCACCTTCGTTTACCCATTGCCATGGCGGCTGAGAAGCGAACCATTGGGCTCGGCATGGACTACTCGCCGTCGAGCAAGGCCGCGGCGAAGTGGGCGGTGGATAACCTGGTGAAGGCCGGCGACCGGATCATCCT CGTCCATGTCCTT CCCAAAGGAGCAGATGCCAGCCACAAGGAGCTC TGGAAGAGCACCGGCTCACCTTTGATT CCTCTGCTGGAGTTTA TGGAGATGAACGTGCAGGCGAGGTA TGGGATC AACCCCGA T AAGGAGGTAC TGGA GATCCTGCAAGC TGAATCCAAGT CCAAGCAGG TTGAAGTAC TGGCAA AAGTTTAC TGGGGTGATGCAA GGGAGAAACTC TGTGAGGC AG TAGACGATC TCAAGGTGAATACCTTTGTTCTTGGTTGCAGGGGACTAGGACCCTTGAAAAGGGCCCTACTTGGAAGTGTTAGCAACTATGTTGTCAACAATGCAACCTGCCCGGTTACTGTGGTGCGTGCACCAACCGTGTCAAATGCCTGATTCTATGCTACATGGGACTGCTGGAAATTGGAATGCTGGGCTTGTTTTGCTGTTCATCCATCTTTTAGCAGAGAACCTTCATCTGAGTTGGTGCCATTGCAAGGATTGGTCTCTGGCTCCTGCACTTAGCTTTTCCATGCTATTGGAATGTTATTAAGTTGAATCTTCGGTGTATTTCCTTCTGTTACTTCCTATGTATAGTTCATTACTACTGTTTAATGGTGAATGTTAAAGATTGCCAATGGTG ] [+] EMBL AU063552 [ ACCTCTCTTTTCTTTAGGTGTTTACTTCGACAGCTTCACCACCTTCGTTTACCCATTGCCATGGCGGCTGAGAAGCGAACCATTGGGCTCGGCATGGACTACTCGCCGTCGAGCAAGGCCGCNG GAAGTGGGCGGTGGATAACCTGGTGAAGGCCGGCGACCGGATCATCCT CGTCCATGTCCTT CCCAAAGGAGCAGATGCCAGCCACAAGGAGCTC TGGAAGAGAACCGGCTCACCTTTGATT CCTCTGCTGGAGTTTA TGGAGATGAACGTGCAGGCGAGGTATTGGGATC AACNCCGA T AAGGAGGTACTTNGAGGATCCTNCAAGCTTGAATCCAAGN CCAAGCA ] [+] EMBL AU063323 [ ACCTCTCTTTTCTTTAGGTGTTTACTTCGACAGCTTCACCACCTTCGTTTACCCATTGCCATGGCGGCTGAGAAGCGAACCATTGGGCTCGGCATGGACTACTCGCCGTCGAGCAAGGCCGCGGCGAAGTGGGCGGTGGATAACCTGGTGAAGGCCGGCGACCGGATCATCCT CGTCCATGTCCTT CCCAAAGGAGCAGATGCCAGCCACAAGGAGCTC TGGAAGAGCACCGGCTCACCTTTGATT CCTCTGCTGGAGTTTA TGGAGATGAACGTGCAGGCGAGGTA TGGGATC AACCCCGA T AAGGAGGTAC TTGA GATCCTGCAAGCTTGAATCCAAGT CCAAGCAGG TTNAAGTAC TTGCAA AAGTTTACTTGGGGTGATGCAA GGGNGAAACTC TTTTAGGC AG TAGACGGTT TCAAGGTGNATACCTTTGTTCTTGGT ] [+] EMBL AU063602 [ TCTNTNTTCTTTAGGTGTTTACTTNGACAGCTTCACCACCTTCGTTTACCCATTGCCATGGCGGCTGAGAAGCGAACCATTGGGCTCGGCATGGACTACTCGCCGTCGAGCAAGGCCGCNG GAAGTGGGCGGTNGATAACCTGGTGAAGGCCGGCGACCGGATCATCCT CGTCCATGTCCTT CCCAAAGGAGCAGATGCCAGCCACAAGGAGCTC TGGAAGA NACCGGCTNACCTTTGATT CCTCTGCTGGAGTTTA TGGAGATGAACGTGCAGGCGAGGTA TGGGATC ANCCCCGA T AAGGAGGTAC TNGA GATCCTGCAAGC TGAATNCAAGT CCAAGCAGG TTGAAGTAC TTGCAA AAGTTTAC TNGGGTTATCCAN GGAAG AACTC TTTTAGGCAAG TAAACGATC TCAAGGTGAATACNTTT ] [+] EMBL AU063603 [ TCTCTTTTCTTTAGGTGTTTACTTCGACAGCTTCACCACCTTCGTTTACCCATTGCCATGGCGGCTGAGAAGCGAACCATTGGGCTCGGCATGGACTACTCGCCGTCGAGCAAGGCCGCGGCGAAGTGGGCGGTGGATAACCTGGTGAAGGCCGGCGACCGGATCATCCT CGTCCATGTCCTT CCCAAAGGAGCAGATGNCAGCCACAAGGAGCTC TGGAAGAGCACCGGCTCACCTTTGATT CCTCTGCTGGAGTTTA TGGAGATGAACGTGCAGNCGAGGTA TGGGATC AACCCCGA T AAGGAGGTAC TGGA GATCCTGCAAGT TGAATCCAAGT CCAAGCAGGTTTGAAGTACTTGGCAANAAGTTTACTTGNGGTGATGCAA GNGAGAAACTC TTTGAGGC AN TAGACGTTC TCAAGGTGAAT ] [+] EMBL C29154 [ CTCTTTTCTTTAGGTGTTTACTTCGACAGCTTCACCACCTTCGTTTACCCATTGCCATGGCGGCTGAGAAGCGAACCATTGGGCTCGGCATGGACTACTCGCCGTCGAGCAAGGCCGCGGCGAAGTGGGCGGTGGATAACCTGGTGAAGGCCGGCGACCGGATCATCCT CGTCCATGTCCTT CCCAAAGGAGCAGATGCCAGCCACAAGGAGCTC TGGAAGAGCACCGGCTCACCTTTGATT CCTCTGCTGGAGTTTA TGGAGATGAACGTGCAGGCGAGGTA TGGGATC AANCCCGA T AAGGAGGTAC TGGA GATCCTGCAANCTTGAATCCAAGTNCCAAGCAGG TTGAAGTAC TTGCAA AAGTTTACTTGGGGTTATGCAAGGGGNGAAACTCTTNTTAGGC AGTTAGACGATCTTCAAGGTGATTACC ] [+] EMBL AU092886 [ ggcCGACCGGATCATCCTCCGTCCATGTCNTTCCCCAAAGGACCAGATGCCAGCCACAAGGAGCTC TGGAAGAGCACCGGCTCACCTTTGATT CCTCTGCTGGAGTTTA TGGAGATGAACGTGCAGGCGAGGTA TGGGATC AACCCCGA TAAAGGAGGTAC TGGA GATCCTGCAAGC TGAATCCAAGTCCCAAGCAGG TTGAAGTAC TGGCAA AAGTTTAC TGGGGTGATGCAA GGGAGAAACTC TGTGAGGC AG TAGACGATC TCAAGGTGAATACCTTTGTTCTTGGTTGCAGGGGACTAGGACCCTTGAAAAGGGCCCTACTTGGAAGTGTTAGCAACTATGTTGTCAACAATGCAACCTGCCCGGTTACTGTGGTGCGTGCACCAACCGTGTCAAATGCCTGATTCTATGCTACATGGGACTGCTGGAAATTGGAATGCTGGGCTTGTTTTGCTGTTCATCCATCTTTTAGCAGAGAACCTTCATCTGAGTTGGTGCCATTGCAAGGATTGGTCTCTGGCTCCTGCACTTAGCTTTTCCATGCTATTGGAATGTTATTAAGTTGAATCTTCGGTGTATTTCCTTCTGTTACTTCCTATGTATAGTTCATTACTACTGTTTAATGGTGAATGTTAAAGATTGCCAATGGTGTGCTTGCTTTAAAAAAA] [+] EMBL AU165306 [ angctTC TGGAAGAGCACCGGCTCACCTTTGATTCCCTCTGCTGGAGTTTA TGGAGATGAACGTGCAGGCGAGGTA TGGGATC AACCCCGA T AAGGAGGTAC TGGA GATCCTGCAAGC TGAATCCAAGT CCAAGCAGG TTGAAGTAC TGGCAA AAGTTTAC TGGGGTGATGCAA GGGAGAAACTC TGTGAGGC AG TAGACGATC TCAAGGTGAATACCTTTGTTCTTGGTTGCAGGGGACTAGGACCCTTGAAAAGGGCCCTACTTGGAAGTGTTAGCAACTATGTTGTCAACAATGCAACCTGCCCGGTTACTGTGGTGCGTGCACCAACCGTGTCAAATGCCTGATTCTATGCTACATGGGACTGCTGGAAATTGGAATGCTGGGCTTGTTTTGCTGTTCATCCATCTTTTAGCAGAGAACCTTCATCTGAGTTGGTGCCATTGCAAGGATTGGTCTCTGGCTCCTGCACTTAGCTTTTCCATGCTATTGGAATGTTATTAAGTTGAATCTTCGGTGTATTTCCTTCTGTTACTTCCTATGTATAGTTCATTACTACTGTTTAATGGTGAATGTTAAAGATTGCCAAaaaaaa ] consensusID : consensus_13862#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 709 fasta sequence [CTGGATACCCCTTGGTNAAACCCCCGGNCAACCCGGAATCATCCCTCGNCCCATGTCCCTTCCCCAAAAGGACCAANATGCCCAGCCCACAAGGAGCTCTGGAAAGAGCACCGGCTNCACCTTTGATTCCCTCTGCCTGGAGTTTTATGGAGATGAACGTGCAGGCGAGGTATGGGATCAACCCCCGATAAAGGAGGTNCTGGAGATCCTGCAAGCTGAATCCAAGTCCAAGCAGGTTGAAGTACTGGCAAAAAGTTTACTGGGGTGATGCAAGGGAGAAACTCTGTGAGGCAGTAGACGATCTCAAGGTGAATNCCTTTGTTCTTGGTTGCAGGGGACTAGGACCCTTGAAAAGGGCCCTACTTGGAAGTGTTAGCAACTATGTTGTCAACAATGCAACCTGCCCGGTTACTGTGGTGCGTGCACCAACCGTGTCAAATGCCTGATTCTATGCTACATGGGACTGCTGGAAATTGGAATGCTGGGCTTGTTTTGCTGTTCATCCATCTTTTAGCAGAGAACCTTCATCTGAGTTGGTGCCATTGCAAGGATTGGTCTCTGGCTCCTGCACTTAGCTTTTCCATGCTATTGGAATGTTATTAAGTTGAATCTTCGGTGTATTTCCTTCTGTTACTTCCTATGTATAGTTCATTACTACTGTTTAATGGTGAATGTTAAAGATTGCCAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL C97487 [CTGGATACCCCTTGGTNAAACCCCCGGNCAACCCGGAATCATCCCTCGNCCCATGTCCCTTCCCCAAAAGGACCAANATGCCCAGCCCACAAGGAGCTCTGGAAAGAGCACCGGCTNCACCTTTGATTCCCTCTGCCTGGAGTTTTATGGAGATGAACGTGCAGGCGAGGTATGGGATCAACCCCCGATAAAGGAGGTNCTGGAGATCCTGCAAGCTGAATCCAAGTCCAAGCAGGTTGAAGTACTGGCAAAAAGTTTACTGGGGTGATGCAAGGGAGAAACTCTGTGAGGCAGTAGACGATCTCAAGGTGAATNCCTTTGTTCTTGGTTGCAGGGGACTAGGACCCTTGAAAAGGGCCCTACTTGGAAGTGTTAGCAACTATGTTGTCAACAATGCAACCTGCCCGGTTACTGTGGTGCGTGCACCAACCGTGTCAAATGCCTGATTCTATGCTACATGGGACTGCTGGAAATTGGAATGCTGGGCTTGTTTTGCTGTTCATCCATCTTTTAGCAGAGAACCTTCATCTGAGTTGGTGCCATTGCAAGGATTGGTCTCTGGCTCCTGCACTTAGCTTTTCCATGCTATTGGAATGTTATTAAGTTGAATCTTCGGTGTATTTCCTTCTGTTACTTCCTATGTATAGTTCATTACTACTGTTTAATGGTGAATGTTAAAGATTGCCAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU182054 [ TGGGGTGATGCAAGGGAGAAACTCTGTGAGGCAGTAGACGATCTCAAGGTGAATACCTTTGTTCTTGGTTGCAGGGGACTAGGACCCTTGAAAAGGGCCCTACTTGGAAGTGTTAGCAACTATGTTGTCAACAATGCAACCTGCCCGGTTACTGTGGTGCGTGCACCAACCGTGTCAAATGCCTGATTCTATGCTACATGGGACTGCTGGAAATTGGAATGCTGGGCTTGTTTTGCTGTTCATCCATCTTTTAGCAGAGAACCTTCATCTGAGTTGGTGCCATTGCAAGGATTGGTCTCTGGCTCCTGCACTTAGCTTTTCCATGCTATTGGAATGTTATTAAGTTGAATCTTCGGTGTATTTCCTTCTGTTACTTCCTATGTATAGTTCATTACTACTGTTTAATGGTGAATGTTAAAGATTGCCAAAAA ] consensusID : consensus_13862#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 617 fasta sequence [AGATCAAAAGCCATACTTGTNCTGAGCTTGGACGAANAATATTCTTCGTCTTTCCAGATGANTAGAGAGCCTTCTGGAGAGAGAAGCACCATCATGNCTGCCTATCTGGCGAACGNCCGATCGGCCATGTAAAGGAGAAAAGGCAGTTTGCACAAGGAATAAAGGCAACCTAGTCTACAGGTTCGCTATCAACAGGCGATATGTCACCCTATTTCTGTTGCTGTTCAACGACGTCCTTAAATAGGAGTACTTGTGCTNCAAGCCTAACCCAGAGATAGCACCNCAAATACCTCTCTTTTCTTTAGGTGTTTACTTCGACAGCTTCACCACCTTCGTTTACCCATTGCCATGGCGGCTGAGAAGCGAACCATTGGGCTCGGCATGGACTACTCGCCATCGAGCAAGGCCGCGGCGAAGTGGGCGGTGGATAACCTGGTGAAGGCCGGCGACCGGATCATCCTCGTCCATGTCCTTCCCAAAGGAGCAGATGCCAGCCACAAGGAGCTCTGGAAGAGCACCGGCTCACGTATGTAGGGGCATTGCATTTTTTTTTCTTTTGCCTTTTCAGTTTCTTCTCTGTTCCCCCTGTCNNGTCCTCNNACAAGCNTNGCGANTCC] [-] EMBL CA764828 [AGATCAAAAGCCATACTTGTNCTGAGCTTGGACGAANAATATTCTTCGTCTTTCCAGATGANTAGAGAGCCTTCTGGAGAGAGAAGCACCATCATGNCTGCCTATCTGGCGAACGNCCGATCGGCCATGTAAAGGAGAAAAGGCAGTTTGCACAAGGAATAAAGGCAACCTAGTCTACAGGTTCGCTATCAACAGGCGATATGTCACCCTATTTCTGTTGCTGTTCAACGACGTCCTTAAATAGGAGTACTTGTGCTNCAAGCCTAACCCAGAGATAGCACCNCAAATACCTCTCTTTTCTTTAGGTGTTTACTTCGACAGCTTCACCACCTTCGTTTACCCATTGCCATGGCGGCTGAGAAGCGAACCATTGGGCTCGGCATGGACTACTCGCCATCGAGCAAGGCCGCGGCGAAGTGGGCGGTGGATAACCTGGTGAAGGCCGGCGACCGGATCATCCTCGTCCATGTCCTTCCCAAAGGAGCAGATGCCAGCCACAAGGAGCTCTGGAAGAGCACCGGCTCACGTATGTAGGGGCATTGCATTTTTTTTTCTTTTGCCTTTTCAGTTTCTTCTCTGTTCCCCCTGTCNNGTCCTCNNACAAGCNTNGCGANTCC] consensusID : consensus_13862#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 342 fasta sequence [ATGTGCTGATGGGCTTGACATAGGGATCTGGGCTGGAAATTGGGATATGGGCTGGGGCTGTTGTGTGTGTGGGCTGGGTGTGCAATGCCCATGCTGTTGTAGCAAGAGGAACACTTGCATGCTGGAGTTGGGTGCACAATTGGCAAAGGATTGGTGCTGCTGGCTGCCTGGCAACTTGAGCTGTGTGTGCCATGGCTGATGTGGGAATGGTTGATTGAAAGTTGGAATGCTTGCGGTGGTGATGTTGCCTGTGCTGGTTACTTCCTATGTATAGTTCATTACTACTGTTTAATGGTGAATGTTAAAGATTGCCAATGGTGTGCTTGCTTTATGTAAAAAAAA] [+] EMBL BI805287 [ATGTGCTGATGGGCTTGACATAGGGATCTGGGCTGGAAATTGGGATATGGGCTGGGGCTGTTGTGTGTGTGGGCTGGGTGTGCAATGCCCATGCTGTTGTAGCAAGAGGAACACTTGCATGCTGGAGTTGGGTGCACAATTGGCAAAGGATTGGTGCTGCTGGCTGCCTGGCAACTTGAGCTGTGTGTGCCATGGCTGATGTGGGAATGGTTGATTGAAAGTTGGAATGCTTGCGGTGGTGATGTTGCCTGTGCTGGTTACTTCCTATGTATAGTTCATTACTACTGTTTAATGGTGAATGTTAAAGATTGCCAATGGTGTGCTTGCTTTATGTAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13862#1 ------------------------------------------------------------ consensus_13862#2 ------------------------------------------------------------ consensus_13862#4 ------------------------------------------------------------ consensus_13862#0 GCTTGACAAAGCAAAGAACTTCGTTGAGGAAAACAACATCAACCATGAGGCTATTGTTTG 60 consensus_13862#3 ------------------------------------------------------------ consensus_13862#1 ------------------------------------------------------------ consensus_13862#2 ------------------------------------------------------------ consensus_13862#4 ------------------------------------------------------------ consensus_13862#0 GAAGACGCTACTGTCAGCTTGTCGACTTCACCAGCACAACGAATATGCAAAATTGGCTTC 120 consensus_13862#3 ------------------------------------------------------------ consensus_13862#1 ------------------------------------------------------------ consensus_13862#2 ------------------------------------------------------------ consensus_13862#4 ------------------------------------------------------------ consensus_13862#0 TGAAAAATTGGTTCAACTGGAGCAATGCGATGCTGGATCATATGTTATGCTGTCAAACAT 180 consensus_13862#3 ------------------------------------------------------------ consensus_13862#1 --------------------ACAAGTTCGCTATCAACAGGCGATATGTCACCCTATTTCT 40 consensus_13862#2 ------------------------------------------------------------ consensus_13862#4 ------------------------------------------------------------ consensus_13862#0 ATATGCAACCAACAACAAATGGCACGACACTTTTGAGCTTAGAGTTTCAATGCAGGAAAG 240 consensus_13862#3 ------------------------------------------------------------ consensus_13862#1 GTTGCTGTTCAACGACGTCCTTAAATAGGAGTACTTGTGCTACAAGCCTAACCCAGAGAT 100 consensus_13862#2 ------------------------------------------------------------ consensus_13862#4 ------------------------------------------------------------ consensus_13862#0 GAAGGTCAGGAAGCAGCCTGGTCGATCTTGGATCCACCTGAAGAATACTGTGCATACATT 300 consensus_13862#3 ------------------------------------------------------------ consensus_13862#1 AGCACCACAAATACCTCTCTTTTCTTTAGGTGTTTACTTCGACAGCTTCACCACCTTCGT 160 consensus_13862#2 ------------------------------------------------------------ consensus_13862#4 ------------------------------------------------------------ consensus_13862#0 TGTTGCAGGGGATGCGTCACACCCACAATCAGCTGAAATTTATGCTTACTTGGAGAAGCT 360 consensus_13862#3 ------------------------------------------------------------ consensus_13862#1 TTACCCATTGCCATGGCGGCTGAGAAGCGAACCATTGGGCTCGGCATGGACTACTCGCCG 220 consensus_13862#2 ------------------------------------------------------------ consensus_13862#4 ------------------------------------------------------------ consensus_13862#0 GGTGGAGAGACTGAAGGAGATTGGGTACACAAGTAGAACTGATCTTGTTGTTCATGATGT 420 consensus_13862#3 ------------------------------------------------------------ consensus_13862#1 TCGAGCAAGGCCGCGGCGAAGTGGGCGGTGGATAACC--TGGTGAAGGCC---GGCGACC 275 consensus_13862#2 ---------------------------CTGGATACCCCTTGGTNAAACCCCCGGNCAACC 33 consensus_13862#4 ------------------------------------------------------------ consensus_13862#0 AGAGGATGAACAAAGGGAAACAGCTCTTAAGTTCCACAGTGAGAAGCTGGCCATTGCATT 480 consensus_13862#3 ------------------------------------------------------------ consensus_13862#1 --GGATCATCCTC--GTCCATGTCCTT--CCCAAAGGAGC--AGATGCCAG--CCACAAG 325 consensus_13862#2 CGGAATCATCCCTCGNCCCATGTCCCTTCCCCAAAAGGACCAANATGCCCAGCCCACAAG 93 consensus_13862#4 ------------------------------------------------------------ consensus_13862#0 TGGGATCATCAGCACTCCAAGTGGGACTCCACTTAGGATCTTCAAGAATCTGCGTGTTTG 540 consensus_13862#3 -----AGATCAAAAGCCATACTTGTNCTGAGCTT-GGACGAANAATATTCTTCGTCTTTC 54 consensus_13862#1 GAGCTCTGGAA-GAGCACCGGCTC-ACCTTTGATTCC-TCTGC-TGGAGTTT-ATGG-AG 379 consensus_13862#2 GAGCTCTGGAAAGAGCACCGGCTNCACCTTTGATTCCCTCTGCCTGGAGTTTTATGG-AG 152 consensus_13862#4 ------------------------------------------------------------ consensus_13862#0 TGAGGATTGCCATGAAGCGATCAAGT-ACATAAGTCTGGCCACAGGTAGGGAAATAGTTG 599 consensus_13862#3 CA--GATGANTAGAGAGCCTTCTGGAGAGAGAAGCACCATCATGNCTG----------CC 102 consensus_13862#1 ATGAACGTGCAGGCGAGGTATGGGATCAACCCC-GATAA-GGAGGTACTGGAGATCCTGC 437 consensus_13862#2 ATGAACGTGCAGGCGAGGTATGGGATCAACCCCCGATAAAGGAGGTNCTGGAGATCCTGC 212 consensus_13862#4 ------------------------------------------------------------ consensus_13862#0 TTCGTGACTTGTATCGGTTTCATCATTTCAAGGATGCTAGTT-GTTCTTGTGAGGATTTC 658 consensus_13862#3 TATCTGGCGAACGNCCGATCGGCCATGTAAAGGAGAAAAGGCAGTTTGCACAAGGAATAA 162 consensus_13862#1 AAGCTGAATCCAAGTCCAAGCAGGTTGAAGTACTGGCAAAA-GTTTACTGGGGTGATGCA 496 consensus_13862#2 AAGCTGAATCCAAGTCCAAGCAGGTTGAAGTACTGGCAAAAAGTTTACTGGGGTGATGCA 272 consensus_13862#4 ------------------------------------------------------------ consensus_13862#0 TGGTGAAATTTTGTTGACCA-TTCATGATGACTAACTGAGTAACTGAAGATTGTTATGTA 717 consensus_13862#3 AGGC--AACCTAGTCTACAGGTTCGCTATCAACAGGCGA-TATGTCACCCTATTTCTGTT 219 consensus_13862#1 AGGGAGAAACTCTGTGAGGCAGTAGACGATCTCAAGGTGAATACCTTTGTTCTTGGTTGC 556 consensus_13862#2 AGGGAGAAACTCTGTGAGGCAGTAGACGATCTCAAGGTGAATNCCTTTGTTCTTGGTTGC 332 consensus_13862#4 ------------------------------------------------------------ consensus_13862#0 CTGCGTCGTGCACGTGCATGGCTGTACTAGAGATTGTGGCTCAAATGTATATTGATTTAA 777 consensus_13862#3 GCTGTTCAACGACGTCCTTAA--ATAGGAGTACTTGTGCTNCAAGC-----CTAACCCAG 272 consensus_13862#1 AGGGGACTAGGA---------CCCTTGAAAAGGGCCCTACTTGGA--AGTGTTAGCAACT 605 consensus_13862#2 AGGGGACTAGGA---------CCCTTGAAAAGGGCCCTACTTGGA--AGTGTTAGCAACT 381 consensus_13862#4 -------------------------------ATGTGCTGATGGGCTTGACATAGGGATCT 29 consensus_13862#0 GGAGAATTCCTTATTAGCCATCTGATGCCAAGTATATTCCTCATC----TGCGGAGAAGC 833 consensus_13862#3 AGATAGCACCN-----------------CAAATACCTCTCTTTTC----TTTAGGTGTTT 311 * consensus_13862#1 ATGTTGTCAA-CAATGCAACCTGCCCGGTTACTGTGGTGCGTGCACCAACCGTGTCAAAT 664 consensus_13862#2 ATGTTGTCAA-CAATGCAACCTGCCCGGTTACTGTGGTGCGTGCACCAACCGTGTCAAAT 440 consensus_13862#4 GGGCTG--GA-AATTGGGATATGGGCTGGGGCTGTTGTGTGTGTGGGCTGGGTGTGCAAT 86 consensus_13862#0 GCATTAACAGGCTACCTCACCTTGATGAGCCAGACATCCTCACCTCCACCTACGAACCAT 893 consensus_13862#3 ACTTCGACAG-CTTCACCACCTTCGTTTACC---CATTGCCATGGCGGCTGAGAAGCGA- 366 * * * consensus_13862#1 GCCTGATTCTATGCTACATGGGACTGCTGGAAATTGGAATG-CTGGGCTTGTTTTGCTGT 723 consensus_13862#2 GCCTGATTCTATGCTACATGGGACTGCTGGAAATTGGAATG-CTGGGCTTGTTTTGCTGT 499 consensus_13862#4 GCCCATGCTGTTGTAGCAAGAG------GAACACTTGCATG-CTGGAGTTG----GGTGC 135 consensus_13862#0 TATCATCGGCAGTCGGCATGGACTACTCGCCATTTAGCAAGGCTGTGGTGAGGCAGGCGG 953 consensus_13862#3 -ACCATTGG-GCTCGGCATGGACTACTCGCCATCGAGCAAGGCCGCGGCGAAGTGGGCGG 424 ** * * * * * * * * * consensus_13862#1 TCATCCATCTTTTAGCAGAGAACCTTCATCTGAGTTGGTGCCATTGCAAGGATTGGTCTC 783 consensus_13862#2 TCATCCATCTTTTAGCAGAGAACCTTCATCTGAGTTGGTGCCATTGCAAGGATTGGTCTC 559 consensus_13862#4 ACAA-------TTGGCAAAGGATTGGTGCT---GCTGGCTGCCTGGCAA--CTTGAGCTG 183 consensus_13862#0 TGGATAA---CCTGGTGAAGGCCAGCAACT--GGATCATCCTGATCCATGTCCTTCCCAG 1008 consensus_13862#3 TGGATAA---CCTGGTGAAGGCCGGCGACC--GGATCATCCTCGTCCATGTCCTTCCCAA 479 * * ** * * ** * * consensus_13862#1 TGGCTCCTGCACTTAGCTTTTCCATG-CTATTGGAATGTTATT--AAG-TTGAATCTTCG 839 consensus_13862#2 TGGCTCCTGCACTTAGCTTTTCCATG-CTATTGGAATGTTATT--AAG-TTGAATCTTCG 615 consensus_13862#4 TGTGTGCCATGGCTGATGTGGGAATGGTTGATTGAAAGTTGGA--ATGCTTGCGGTGGTG 241 consensus_13862#0 AGGAGCAGATGCCAGCCACAAGGAGCTCTGGAAGAGCACCGGCTCACACATGCAGAGGCA 1068 consensus_13862#3 AGGAGCAGATGCCAGCCACAAGGAGCTCTGGAAGAGCACCGGCTCACGTATGTAGGGGCA 539 * * * ** * ** consensus_13862#1 GTGTATTTCCTTCTG-TTACTTCCTATGTATAGTTCATTACTACTGTTTAATGGTGAATG 898 consensus_13862#2 GTGTATTTCCTTCTG-TTACTTCCTATGTATAGTTCATTACTACTGTTTAATGGTGAATG 674 consensus_13862#4 ATGTTGCCTGTGCTGGTTACTTCCTATGTATAGTTCATTACTACTGTTTAATGGTGAATG 301 consensus_13862#0 TTGCAATTT-TTCTG-CTGCTTCTCTTGTTCAGCAAATTCTGACTGCTGCTTCTCTTGTT 1126 consensus_13862#3 TTGCATTTT-TTTTT-CT--TTTGCCTTTTCAGTTTCTTCTCTGTTCCCCCTGTCNNGTC 595 ** * * * ** * * ** ** * * * consensus_13862#1 TTAAAGATTGCCAATGGTGTGCTTG----CTTTAAAAAAA-------------------- 934 consensus_13862#2 TTAAAGATTGCCAAAAAAAAAAAAA----AAAAAAAAAA--------------------- 709 consensus_13862#4 TTAAAGATTGCCAATGGTGTGCTTGCTTTATGTAAAAAAAA------------------- 342 consensus_13862#0 CAACAAATT-CTGACGCAGAAAGCTTAACAGGGAGGTGTTGGGTCAACCCTGATAAGGAG 1185 consensus_13862#3 CTCNNA----CAAGCNTNGCGANTCC---------------------------------- 617 * consensus_13862#1 ------------------------------------------------------------ consensus_13862#2 ------------------------------------------------------------ consensus_13862#4 ------------------------------------------------------------ consensus_13862#0 GTACTAGCGATCCTGCAAGCTGAATCGAAGTCCAAGCAGGTAATGACTCAGCTTTGCCAG 1245 consensus_13862#3 ------------------------------------------------------------ consensus_13862#1 ------------------------------------------------------------ consensus_13862#2 ------------------------------------------------------------ consensus_13862#4 ------------------------------------------------------------ consensus_13862#0 AAGATCACCCACCTTTGTATTTGGGTGGTTTGTGAGGAATTCTGCATAGGGGACAGGCGA 1305 consensus_13862#3 ------------------------------------------------------------ consensus_13862#1 ------------------------------------------------------------ consensus_13862#2 ------------------------------------------------------------ consensus_13862#4 ------------------------------------------------------------ consensus_13862#0 ATTATGCTTGATGGTTCTATAGTTGTAACAATCTGCAACTGCCTGGGCGTCTGTACAGAC 1365 consensus_13862#3 ------------------------------------------------------------ consensus_13862#1 ------------------------------------------------------------ consensus_13862#2 ------------------------------------------------------------ consensus_13862#4 ------------------------------------------------------------ consensus_13862#0 TATGCTTGAGGTTCACCATTCCATTTCCCATGCTGGCATTCTCATTTTTCTTGGTTAGGA 1425 consensus_13862#3 ------------------------------------------------------------ consensus_13862#1 ------------------------------------------------------------ consensus_13862#2 ------------------------------------------------------------ consensus_13862#4 ------------------------------------------------------------ consensus_13862#0 CAAGAGCTTCTTGACATTCATTGACAAGTGTATTGAAGGTTCTTATTTTGTAATGTCATA 1485 consensus_13862#3 ------------------------------------------------------------ consensus_13862#1 ------------------------------------------------------------ consensus_13862#2 ------------------------------------------------------------ consensus_13862#4 ------------------------------------------------------------ consensus_13862#0 GTAAATTCCTTGTTTGGGGTCATGTCTGCAGTTTGCAAGGAGTCCAGGGAAGGTTCACAC 1545 consensus_13862#3 ------------------------------------------------------------ consensus_13862#1 ------------------------------------------------------------ consensus_13862#2 ------------------------------------------------------------ consensus_13862#4 ------------------------------------------------------------ consensus_13862#0 TTGAACCCAAGCAGTGGGCTGTTCCAACCAAATGAGAAGAAGGATGTGGTAACATCAACT 1605 consensus_13862#3 ------------------------------------------------------------ consensus_13862#1 ------------------------------------------------------------ consensus_13862#2 ------------------------------------------------------------ consensus_13862#4 ------------------------------------------------------------ consensus_13862#0 GGCTAGCAATGGTTGGGATTCTCGCTGGTTACCTTTGTGATGGGGCCTCTTAAGATGTTA 1665 consensus_13862#3 ------------------------------------------------------------ consensus_13862#1 ------------------------------------------------------------ consensus_13862#2 ------------------------------------------------------------ consensus_13862#4 ------------------------------------------------------------ consensus_13862#0 AAGCTCTATGCTGTTCCTTACATGATATTGTCATGTGGTTGGATTTTGTCACATACTTGC 1725 consensus_13862#3 ------------------------------------------------------------ consensus_13862#1 ------------------------------------------------------------ consensus_13862#2 ------------------------------------------------------------ consensus_13862#4 ------------------------------------------------------------ consensus_13862#0 ACCATCATGGCCATGAAGAAGCTTCCCTGGCACCATGGAAGAGTAAATAACATTATTAAT 1785 consensus_13862#3 ------------------------------------------------------------ consensus_13862#1 ------------------------------------------------------------ consensus_13862#2 ------------------------------------------------------------ consensus_13862#4 ------------------------------------------------------------ consensus_13862#0 GTTGTGGGATTGCTATTTGTCAATGATGCAAGGATGGCCACTAGGGTATAGTCCATTTTT 1845 consensus_13862#3 ------------------------------------------------------------ consensus_13862#1 ------------------------------------------------------------ consensus_13862#2 ------------------------------------------------------------ consensus_13862#4 ------------------------------------------------------------ consensus_13862#0 GTTCAACATAGGGCATAGTCTAGTTTTGTTCAACATAGGGCATAGTCCATTTTTGTTTGC 1905 consensus_13862#3 ------------------------------------------------------------ consensus_13862#1 ------------------------------------------------------------ consensus_13862#2 ------------------------------------------------------------ consensus_13862#4 ------------------------------------------------------------ consensus_13862#0 TAAATGGCAGAAGGTTTATTTGTTCAAACATAGGTTCTGCGTGTAAAAATTATTGAGTAG 1965 consensus_13862#3 ------------------------------------------------------------ consensus_13862#1 ------------------------------------------------------------ consensus_13862#2 ------------------------------------------------------------ consensus_13862#4 ------------------------------------------------------------ consensus_13862#0 AGATTTATGCCTTTAAAGATAATTAGCTGAATTTCCCGTGCAACTAAACTAAATGATTAT 2025 consensus_13862#3 ------------------------------------------------------------ consensus_13862#1 ------------------------------------------------- consensus_13862#2 ------------------------------------------------- consensus_13862#4 ------------------------------------------------- consensus_13862#0 GTGAAAGTAGAATTGTATTTGACATACAACTCTTGCATCTATATATGTA 2074 consensus_13862#3 ------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||