These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13866#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 941 fasta sequence [TCGCCACGCTTCCACTCTGCTCGTCCTCCTCCTCCTCCCCTTCTCCGCAGCAACAGCCCAAACGGGCGCGGGCGCCAATGGAGACCGCGGCGATGCCAAGATCTCCGTGCTGCTCCCTCCCCTCCGCCCGTGTCCTCCCCTCCCGCCTTCCCCTCCTGCCCCGCCCCGCGCCGGCGGCTCTCTCGGCCCCGGCCGCCAGGCCGGTCGTGGCCCGGTGCGCCGCCGCCGCCGGCCACGGGGGCGAGGGCGAGATGCCCATAGAGAAGAGGTTTCCTCCCTTCCCGGCTGTGATGGACATCA-ACCAAATCCGCGATAT-CTTGCCGCACAGGTTTCCATTCCTTCTGGTTGATAGAGTGATTGATTACAAGCCAGGGGAATATGCTGTTGGGATCAAGAATGTTACAATAAATGATAACTTCTTCCCAGGGCATTTTCCGGAGAGACCTATAATGCCTGGTGTTCTTATGGTGGAGGCAATGGCCCAGGTTGGAGGTCTGGTTATGTTGCAACCTGAAGTTGGTGGATCTCGAGAGAACTTCTTTTTTGCAGGGATTGATAAAGTGAGATTTCGTAAGCCTGTGATTGCTGGAGACACCTTGATTATAAGGATGACTCTGATCAAGTTGCAGAAGAGGTTTGGAATCGCAAAGATGGAAGGAAAAGCATATGTTGGAGGCGACCTAGTATGTGAGGGAGAGTTCTTGATGGCAACCGGATCTGAATAAGGTACAAGGCAATGGTGCAGCTTCATTGCCTACCACAATCAAGTTTTGGACCATGTTTGTAACAGTGTACTGTAGCTCCTATAGTCTAGTCTCGATGGTGATGCTTAATGCAGGACTGCTGAGCTATAAAATGCTTTTTATGCCGATGATGGTAAAATTGAATCAACCAGATATGTATATGGACGACGTCTTTGCTTTTTGAAAATAATCCTGCAA] [+] EMBL AK069677 [TCGCCACGCTTCCACTCTGCTCGTCCTCCTCCTCCTCCCCTTCTCCGCAGCAACAGCCCAAACGGGCGCGGGCGCCAATGGAGACCGCGGCGATGCCAAGATCTCCGTGCTGCTCCCTCCCCTCCGCCCGTGTCCTCCCCTCCCGCCTTCCCCTCCTGCCCCGCCCCGCGCCGGCGGCTCTCTCGGCCCCGGCCGCCAGGCCGGTCGTGGCCCGGTGCGCCGCCGCCGCCGGCCACGGGGGCGAGGGCGAGATGCCCATAGAGAAGAGGTTTCCTCCCTTCCCGGCTGTGATGGACATCA ACCAAATCCGCGATAT CTTGCCGCACAGGTTTCCATTCCTTCTGGTTGATAGAGTGATTGATTACAAGCCAGGGGAATATGCTGTTGGGATCAAGAATGTTACAATAAATGATAACTTCTTCCCAGGGCATTTTCCGGAGAGACCTATAATGCCTGGTGTTCTTATGGTGGAGGCAATGGCCCAGGTTGGAGGTCTGGTTATGTTGCAACCTGAAGTTGGTGGATCTCGAGAGAACTTCTTTTTTGCAGGGATTGATAAAGTGAGATTTCGTAAGCCTGTGATTGCTGGAGACACCTTGATTATAAGGATGACTCTGATCAAGTTGCAGAAGAGGTTTGGAATCGCAAAGATGGAAGGAAAAGCATATGTTGGAGGCGACCTAGTATGTGAGGGAGAGTTCTTGATGGCAACCGGATCTGAATAAGGTACAAGGCAATGGTGCAGCTTCATTGCCTACCACAATCAAGTTTTGGACCATGTTTGTAACAGTGTACTGTAGCTCCTATAGTCTAGTCTCGATGGTGATGCTTAATGCAGGACTGCTGAGCTATAAAATGCTTTTTATGCCGATGATGGTAAAATTGAATCAACCAGATATGTATATGGACGACGTCTTTGCTTTTTGAAAATAATCCTGCAA] [+] EMBL CF339703 [TCGCCACGCTTCCACTCTGCTCGTCCTCCTCCTCCTCCCCTTCTCCGCAGCAACAGCCCAAACGGGCGCGGGCGCCAATGGAGACCGCGGCGATGCCAAGATCTCCGTGCTGCTCCCTCCCCTCCGCCCGTGTCCTCCCCTCCCGCCTTCCCCTCCTGCCCCGCCCCGCGCCGGCGGCTCTCTCGGCCCCGGCCGCCAGGCCGGTCGTGGCCCGGTGCGCCGCCGCCGCCGGCCACGGGGGCGAGGGCGAGATGCCCATAGAGAAGAGGTACCCTCCCTTCCCGGCTGTGATGGACATCA ACCAAATCCGCGATAT CTTGCCGCACAGGTTTCCATTCCTTCTGGTTGATAGAGTGATTGATTACAAGCCAGGGGAATATGCTGTTGGGATCAAGAATGTTACAATAAATGATAACTTCTTCCCAGGGCATTTTCCGGAGAGACCTATAATGCCTGGTGTTCTTATGGTGGAG ] [+] EMBL CF339262 [TCGCCACGCTTCCACTCTGCTCGTCCTCCTCCTCCTCCCCTTCTCCGCAGCAACAGCCCAAACGGGCGCGGGCGCCAATGGAGACCGCGGCGATGCCAAGATCTCCGTGCTGCTCCCTCCCCTCCGCCCGTGTCCTCCCCTCCCGCCTTCCCCTCCTGCCCCGCCCCGCGCCGGCGGCTCTCTCGGCCCCGGCCGCCAGGCCGGTCGTGGCCCGGTGCGCCGCCGCCGCCGGCCACGGGGGCGAGGGCGAGATGCCCATAGAGAAGAGGTTTCCTCCCTTCCCGGCTGTGATGGACATCA ACCAAATCCGCGATAT CTTGCCGCACAGGTTTCCATTCCTTCTGGTTGATAGAGTGATTGATTACAAGCCAGGGGAATATGCTGTTGGGATCAAGAATGTTACAATAAATGATAACTTCTTCCCAGGGCATTTTCCGGAGAGACCTATAATGCCTGGTGTTCTTATGGTGG ] [+] EMBL CF338625 [TCGCCACGCTTCCACTCTGCTCGTCCTCCTCCTCCTCCCCTTCTCCGCAGCAACAGCCCAAACGGGCGCGGGCGCCAATGGAGACCGCGGCGATGCCAAGATCTCCGTGCTGCTCCCTCCCCTCCGCCCGTGTCCTCCCCTCCCGCCTTCCCCTCCTGCCCCGCCCCGCGCCGGCGGCTCTCTCGGCCCCGGCCGCCAGGCCGGTCGTGGCCCGGTGCGCCGCCGCCGCCGGCCACGGGGGCGAGGGCGAGATGCCCATAGAGAAGAGGTTTCCTCCCTTCCCGGCTGTGATGGACATCA ACCAAATCCGCGATAT CTTGCCGCACAGGTTTCCATTCCTTCTGGTTGATAGAGTGATTGATTACAAGCCAGGGGAATATGCTGTTGGGATCAAGAATGTTACAATAAATGATAACTTCTTCCCAGGGCATTTTCCGGAGAGACCTATAATGCCTGG ] [+] EMBL CF338301 [TCGCCACGCTTCCACTCTGCTCGTCCTCCTCCTCCTCCCCTTCTCCGCAGCAACAGCCCAAACGGGCGCGGGCGCCAATGGAGACCGCGGCGATGCCAAGATCTCCGTGCTGCTCCCTCCCCTCCGCCCGTGTCCTCCCCTCCCGCCTTCCCCTCCTGCCCCGCCCCGCGCCGGCGGCTCTCTCGGCCCCGGCCGCCAGGCCGGTCGTGGCCCGGTGCGCCGCCGCCGCCGGCCACGGGGGCGAGGGCGAGATGCCCATAAAGAAGAGGTTTCCTCCCTTCCCGGCTGTGATGGACATCA ACCAAATCCGCGATAT CTTGCCGCACAGGTTACCATTCCTTCTGGGTGATAGAGTGATTGATTACAAGCCAGGGGAATATGCT ] [+] EMBL CF338305 [TCGCCACGCTTCCACTCTGCTCGTCCTCCTCCTCCTCCCCTTCTCCGCAGCAACAGCCCAAACGGGCGCGGGCGCCAATGGAGACCGCGGCGATGCCAAGATCTCCGTGCTGCTCCCTCCCCTCCGCCCGTGTCCTCCCCTCCCGCCTTCCCCTCCTGCCCCGCCCCGCGCCGGCGGCTCTCTCGGCCCCGGCCGCCATGCCGGTCGTGGCCCGGTGCGCCGCCGCCGCCGGCCACGGGGGCGAGGGCGAGATGCCCATAGAGAAGAGGTTTCCTCCCTTCCCGGCTGTGATGGACATGAGACCAAATCCGCGATATCCTTGCCGCACAGGTTTCCATTCCTTCTGGTTGATAGAGTGATTGATTACAAGCCAt ] [+] EMBL CF339085 [TCGCCACGCTTCCACTCTGCTCGTCCTCCTCCTCCTCCCCTTCTCCGCAGCAACAGCCCAAACGGGCGCGGGCGCCAATGGAGACCGCGGCGATGCCAAGATCTCCGTGCTGCTCCCTCCCCTCCGCCCGTGTCCTCCCCTCCCGCCTTCCCCTCCTGCCCCGCCCCGCGCCGGCGGCTCTCTCGGCCCCGGCCGCCAGGCCGGTCGTGGCCCGGTGCGCCGCCGCCGCCGGCCACGGGGGCGAGGGCGAGATGCCCATAGAGAAGAGGTTACCTCCCTTCCCGGCTGTGATGGAC ] [+] EMBL CF339717 [TCGCCACGCTTCCACTCTGCTCGTCCTCCTCCTCCTCCCCTTCTCCGCAGCAACAGCCCAAACGGGCGCGGGCGCCAATGGAGACCGCGGCGATGCCAAGATCTCCGTGCTGCTCCCTCCCCTCCGCCCGTGTCCTCCCCTCCCGCCTTCCCCTCCTGCCCCGCCCCGCGCCGGCGGCTCTCTCGGCCCCGGCCGCCAGGCCGGTCGTGGCCCGGTGCGCCGCCGACGC ] [+] EMBL CF340527 [TCGCCACGCTTCCACTCTGCTCGTCCTCCTCCTCCTCCCCTTCTCCGCAGCAACAGCCCAAACGGGCGCGGGCGCCAATGGAGACCGCGGCGATGCCAAGATCTCCGTGCTGCTCCCTCCCCTCCGCCCGTGTNCTCCCCTCCCGCCTTCCCCTCCTGCCCCGCCCCGCGCCGGCGGCTCTCTCGGTCCCGGCCGTCAGGCCCGCCGTGGCCCGGTGCGCCGCC ] [+] EMBL CF340533 [TCGCCACGCTTCCACTCTGCTCGTCCTCCTCCTCCTCCCCTTCTCCGCAGCAACAGCCCAAACGGGCGCGGGCGCCAATGGAGACCGCGGCGATGCCAAGATCTCCGTGCTGCTCCCTCCCCTCCGCCCGTGTNCTCCCCTCCCGCCTTCCCCTTCTGCCCCGCCCCGCGCCGGCGGCTCTCTCGGTCCCGGCCGCCAGGCCGGTCGTGGCC ] [+] EMBL CF339210 [TCGCCACGCTTCCACTCTGCTCGTCCTCCTCCTCCTCCCCTTCTCCGCAGCAACAGCCCAAACGGGCGCGGGCGCCAATGGAGACCGCGGCGATGCCAAGATCTCCGTGCTGCTCCCTCCCCTCCGCCCGTGTCCTCCCCTCCCGCCTTCCCCTCCTGCCCCGCCCCGCGCCGGCGGCT ] [+] EMBL CF339623 [TCGCCACGCTTCCACTCTGCTCGTCCTCCTCCTCCTCCCCTTCTCCGCAGCAACAGCCCAAACGGGCGCGGGCGCCAATGGAGACCGCGGCGATGCCAAGATCTCCGTGCTGCTCCCTCCCCTCCGCCCGTGTCCTCCCCTCCCGCCTTCCCCTCCTGCCCCGCCCCGCG ] [+] EMBL CF338713 [ ACTCTGCTCGTCCTCCTCCTCCTTCCCTTCTCCGCAGCAACAGCCCAAACGGGCGCGGGCGCCAATGGAGACCGCGGCGATGCCAAGATCTCCGTGCTG ] consensusID : consensus_13866#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 415 fasta sequence [TCCCGCCTTCCCCTCCTGCCCCGCCCCGCGCCGGCGGNTCTCTCGGCCCCGGCCGCCAGGCCGGTCGTGGCCCGGTGCGCCGCCGCCGCCGGCCACGGGGGCGAGGGCGAGATGCCCATAGAGAAGAGGTTTCCTCCCTTCCCGGCTGTGATGGACATCAACCAAATCCGCGATATCTTGCCGCACAGGTTTCCATTCCTTCTGGTTGATAGAGTGATTGATTACAAGCCAGGGGAATATGCTGTTGGGATCAAGAATGTTACAATAAATGATAACTTCTTCCCAGGGCATTTTCCGGAGAGACCTATAATGCCTGGTGTTCTTATGGTGGAGGCAATGGTGGATCTCGAGAGAACTTCTTTTTTGCAGGGATTGATAAAGTGAGATTTCGTAAGCCTGTGATTGCTGGAGACAC] [+] EMBL AU172784 [TCCCGCCTTCCCCTCCTGCCCCGCCCCGCGCCGGCGGNTCTCTCGGCCCCGGCCGCCAGGCCGGTCGTGGCCCGGTGCGCCGCCGCCGCCGGCCACGGGGGCGAGGGCGAGATGCCCATAGAGAAGAGGTTTCCTCCCTTCCCGGCTGTGATGGACATCAACCAAATCCGCGATATCTTGCCGCACAGGTTTCCATTCCTTCTGGTTGATAGAGTGATTGATTACAAGCCAGGGGAATATGCTGTTGGGATCAAGAATGTTACAATAAATGATAACTTCTTCCCAGGGCATTTTCCGGAGAGACCTATAATGCCTGGTGTTCTTATGGTGGAGGCAATGGTGGATCTCGAGAGAACTTCTTTTTTGCAGGGATTGATAAAGTGAGATTTCGTAAGCCTGTGATTGCTGGAGACAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13866#0 TCGCCACGCTTCCACTCTGCTCGTCCTCCTCCTCCTCCCCTTCTCCGCAGCAACAGCCCA 60 consensus_13866#1 ------------------------------------------------------------ consensus_13866#0 AACGGGCGCGGGCGCCAATGGAGACCGCGGCGATGCCAAGATCTCCGTGCTGCTCCCTCC 120 consensus_13866#1 ------------------------------------------------------------ consensus_13866#0 CCTCCGCCCGTGTCCTCCCCTCCCGCCTTCCCCTCCTGCCCCGCCCCGCGCCGGCGGCTC 180 consensus_13866#1 --------------------TCCCGCCTTCCCCTCCTGCCCCGCCCCGCGCCGGCGGNTC 40 ************************************* ** consensus_13866#0 TCTCGGCCCCGGCCGCCAGGCCGGTCGTGGCCCGGTGCGCCGCCGCCGCCGGCCACGGGG 240 consensus_13866#1 TCTCGGCCCCGGCCGCCAGGCCGGTCGTGGCCCGGTGCGCCGCCGCCGCCGGCCACGGGG 100 ************************************************************ consensus_13866#0 GCGAGGGCGAGATGCCCATAGAGAAGAGGTTTCCTCCCTTCCCGGCTGTGATGGACATCA 300 consensus_13866#1 GCGAGGGCGAGATGCCCATAGAGAAGAGGTTTCCTCCCTTCCCGGCTGTGATGGACATCA 160 ************************************************************ consensus_13866#0 ACCAAATCCGCGATATCTTGCCGCACAGGTTTCCATTCCTTCTGGTTGATAGAGTGATTG 360 consensus_13866#1 ACCAAATCCGCGATATCTTGCCGCACAGGTTTCCATTCCTTCTGGTTGATAGAGTGATTG 220 ************************************************************ consensus_13866#0 ATTACAAGCCAGGGGAATATGCTGTTGGGATCAAGAATGTTACAATAAATGATAACTTCT 420 consensus_13866#1 ATTACAAGCCAGGGGAATATGCTGTTGGGATCAAGAATGTTACAATAAATGATAACTTCT 280 ************************************************************ consensus_13866#0 TCCCAGGGCATTTTCCGGAGAGACCTATAATGCCTGGTGTTCTTATGGTGGAGGCAATGG 480 consensus_13866#1 TCCCAGGGCATTTTCCGGAGAGACCTATAATGCCTGGTGTTCTTATGGTGGAGGCAATGG 340 ************************************************************ consensus_13866#0 CCCAGGTTGGAGGTCTGGTTATGTTGCAACCTGAAGTTGGTGGATCTCGAGAGAACTTCT 540 consensus_13866#1 ----------------------------------------TGGATCTCGAGAGAACTTCT 360 ******************** consensus_13866#0 TTTTTGCAGGGATTGATAAAGTGAGATTTCGTAAGCCTGTGATTGCTGGAGACACCTTGA 600 consensus_13866#1 TTTTTGCAGGGATTGATAAAGTGAGATTTCGTAAGCCTGTGATTGCTGGAGACAC----- 415 ******************************************************* consensus_13866#0 TTATAAGGATGACTCTGATCAAGTTGCAGAAGAGGTTTGGAATCGCAAAGATGGAAGGAA 660 consensus_13866#1 ------------------------------------------------------------ consensus_13866#0 AAGCATATGTTGGAGGCGACCTAGTATGTGAGGGAGAGTTCTTGATGGCAACCGGATCTG 720 consensus_13866#1 ------------------------------------------------------------ consensus_13866#0 AATAAGGTACAAGGCAATGGTGCAGCTTCATTGCCTACCACAATCAAGTTTTGGACCATG 780 consensus_13866#1 ------------------------------------------------------------ consensus_13866#0 TTTGTAACAGTGTACTGTAGCTCCTATAGTCTAGTCTCGATGGTGATGCTTAATGCAGGA 840 consensus_13866#1 ------------------------------------------------------------ consensus_13866#0 CTGCTGAGCTATAAAATGCTTTTTATGCCGATGATGGTAAAATTGAATCAACCAGATATG 900 consensus_13866#1 ------------------------------------------------------------ consensus_13866#0 TATATGGACGACGTCTTTGCTTTTTGAAAATAATCCTGCAA 941 consensus_13866#1 ----------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||