These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13867#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1940 fasta sequence [GAGTAGAAAACTGCCCCACACATCCATCGCCGGATTCGCCTCCGCCTCTCCCTTCCTCTCGTCGGCGGCAGCAAGCGGCGGCGGCGGCGGAGCTCCGGATTCGAGGGGACCAAGCATCGCCTGCAGAGGAATCCGCCTGAAGGATTGGACTTCGATTCCGGGAGGATCCCCGCCCGGATCCGAATTTTGGCCGACCGGGATCCCCGTCTCCTCCGCCGAGATGGGGAGCACCTCGTCGATGCTGACGCAGTACGACATCGAGGAGGTCCAGGACCACTGCGACCACGCCTTCTCGCAGCAGGAGATCGTGTCGCTGTACCACCGGTTCTGCCAGCTCGACCGGAATGGGGGCGGATTCGTCTCCGCCGAGGAATTCATGACCGTCCCCGAGTTCGCCGTGAACCCTCTCTCTCAGAGGCTTCTGAGGATGCTCGATGGGCTGAACTTTAAGGAGTTCGTGGCGTTCTTATCGGCGTTTAGTCCCCGCGCAAGCCTGCAGCAAAAAATTGAATGGTTTATGACACTGACTGCAATGGGAAGGTGGCATTTGATGATATCTTGAGCATCTTGCGGGATCTGTCTGGTTCTTTTATGACTGAGCAGCAGAGGCAGAAAGTTTTGATCCATGTTTTAGAAGAAGCTGGCTATACAAAAGATTCAAATTTTACTCTGCCAGACTTTATGAAGATTCTTGACAATTCTGATGTGAAGATGGAGGTTGAAGTTCCTATTGACTAAGTACTTGTGTCATTGTTCTGTGCCCCGGCATGCTTAATTAACTTTTACCACCCGTGCATCCTATGACCTTTCAGGTACTGTTACCCTGTAAGGTCCCCTTCATTTTTTCCTAACATCTTTTCATATTGAAAACGTCTGTGATATTATGGCTTATTAATCCTTTCTAGTACCTTCCATTATGAGTGAAAAAAATGTTCTTTGTTCTCTCGCATCGAGGATATCTGCAAATTGGAGCAGGAACAATTTGGGCTTGCTTGGATCATTGTCAATCCATGCCTTACCAAAATATTGGCATGCTAAATTTTTTTTGGTGGAGTATGATTGGTTGGTTTGTTGCCAAGTTGTTTGAGCTCATGGTTCTCTTGCCATTTTTTTTTTGATCCCCAGAGGCCCAGTTCAAATGCACGTCTAGCTTCTCCAGCTACTAATCTTCTGCATGGCAAGTTTAGAGGCAGTAATCCAAAAACAAGCCCTTTATCTCGTCGTACAATGGGCAATGCAACAATATTCATTTCTCTAGGTCAATATGGCTAACCAAAGGACATGCTGCTCTGGCTTTTTATCTGCCATCCTCATGTTTGTTGGTATTCCAGGCAGACTGGTGAAGAGTAAATAGGTTTGCTCAGCTCAGATGACTCCAAATTCACATCCCAAAAATAAGGAACACCTTCCTGTCTTTCTCCCTCTAAAGTTGAGGTCATCAATGTTTTCTCCTATTAATAGACGCTAAGCTGATTACCTGCACTTCTCCCTAGCAGGGAGGAAGGAATGGCAGAACCATTGGAGAATTGGATCTTTGGCTCATCGTTGGGGGGTTTCAAATATCGGTTCAATAGATGAATTTAATAGATTCTAAGGCAAATAGTAAACCATATACTAATCAGAGCCTTTGAGAAAGATGGCAGAAACTGAAGATACTCAGTTACAAAAAGCAATATTCGCACAGTACATTATGATGAAGAAGTTATTCATGGAGTTGGAAGAGGAGAGAGAAGCTTCAGCAACTTCTGCAAGTGCAGCCTTGTCAATGATTCGAAAGCTTCAGAAGGAGAAGGAGGAGCAGAGGATGGAAGCATGGCAGTACAAGAGGATAGCTGAGGAAAAGATTAGCCACAGTGACAAAGCACTGGAGATTCTACAGGAAGTCCTTCAACAGAAGGAACTGGAGAATTTTTATCTGAGAAACCAATTGCTGGTGTATA] [+] EMBL CF318009 [GAGTAGAAAACTGCCCCACACATCCATCGCCGGATTCGCCTCCGCCTCTCCCTTCCTCTCGTCGGCGGCAGCAAGCGGCGGCGGCGGCGGAGCTCCGGATTCGAGGGGACCAAGCATCGCCTGCAGAGGAATCCGCCTGAAGGATTGGACTTCGATTCCGGGAGGATCCCCGCCCGGATCCGAATTTTGGCCGACCGGGATCCCCGTCTCCTCCGCCGAGATGGGGAGCACCTCGTCGATGCTGACGCAGTACGACATCGAGGAGGTCCAGGACCACTGCGACCACGCCTTCTCGCAGCAGGAGATCGTGTCGCTGTACCACCGGTTCTGCCAGCTCGACCGGAATGGGGGCGGATTCGTCTCCGCCGAGGAATTCATGACCGTCCCCGAGTTCGCCGTGAACCCTCTCTCTCAGAGGCTTCTGAGGATGCTCGATGGGCTGAACTTTAAGGAGTTCGTGGCGTTCTTATCGGCGTTTAGTCCCCGCGCAAGCCTGCAGCAAAAAATTGAATGGTTTATGACACTGACTGCAATGGGAAGGTGGCATTTGATGATATCTTGAGCATCTTGCGGGATCTGTCTGGTTCT ] [+] EMBL AK071719 [ TGCCCCACACATCCATCGCCGGATTCGCCTCCGCCTCTCCCTTCCTCTCGTCGGCGGCAGCAAGCGGCGGCGGCGGCGGAGCTCCGGATTCGAGGGGACCAAGCATCGCCTGCAGAGGAATCCGCCTGAAGGATTGGACTTCGATTCCGGGAGGATCCCCGCCCGGATCCGAATTTTGGCCGACCGGGATCCCCGTCTCCTCCGCCGAGATGGGGAGCACCTCGTCGATGCTGACGCAGTACGACATCGAGGAGGTCCAGGACCACTGCGACCACGCCTTCTCGCAGCAGGAGATCGTGTCGCTGTACCACCGGTTCTGCCAGCTCGACCGGAATGGGGGCGGATTCGTCTCCGCCGAGGAATTCATGACCGTCCCCGAGTTCGCCGTGAACCCTCTCTCTCAGAGGCTTCTGAGGATGCTCGATGGGCTGAACTTTAAGGAGTTCGTGGCGTTCTTATCGGCGTTTAGTCCCCGCGCAAGCCTGCAGCAAAAAATTGAATGGTTTATGACACTGACTGCAATGGGAAGGTGGCATTTGATGATATCTTGAGCATCTTGCGGGATCTGTCTGGTTCTTTTATGACTGAGCAGCAGAGGCAGAAAGTTTTGATCCATGTTTTAGAAGAAGCTGGCTATACAAAAGATTCAAATTTTACTCTGCCAGACTTTATGAAGATTCTTGACAATTCTGATGTGAAGATGGAGGTTGAAGTTCCTATTGACTAAGTACTTGTGTCATTGTTCTGTGCCCCGGCATGCTTAATTAACTTTTACCACCCGTGCATCCTATGACCTTTCAGGTACTGTTACCCTGTAAGGTCCCCTTCATTTTTTCCTAACATCTTTTCATATTGAAAACGTCTGTGATATTATGGCTTATTAATCCTTTCTAGTACCTTCCATTATGAGTGAAAAAAATGTTCTTTGTTCTCTCGCATCGAGGATATCTGCAAATTGGAGCAGGAACAATTTGGGCTTGCTTGGATCATTGTCAATCCATGCCTTACCAAAATATTGGCATGCTAAATTTTTTTTGGTGGAGTATGATTGGTTGGTTTGTTGCCAAGTTGTTTGAGCTCATGGTTCTCTTGCCATTTTTTTTTTGATCCCCAGAGGCCCAGTTCAAATGCACGTCTAGCTTCTCCAGCTACTAATCTTCTGCATGGCAAGTTTAGAGGCAGTAATCCAAAAACAAGCCCTTTATCTCGTCGTACAATGGGCAATGCAACAATATTCATTTCTCTAGGTCAATATGGCTAACCAAAGGACATGCTGCTCTGGCTTTTTATCTGCCATCCTCATGTTTGTTGGTATTCCAGGCAGACTGGTGAAGAGTAAATAGGTTTGCTCAGCTCAGATGACTCCAAATTCACATCCCAAAAATAAGGAACACCTTCCTGTCTTTCTCCCTCTAAAGTTGAGGTCATCAATGTTTTCTCCTATTAATAGACGCTAAGCTGATTACCTGCACTTCTCCCTAGCAGGGAGGAAGGAATGGCAGAACCATTGGAGAATTGGATCTTTGGCTCATCGTTGGGGGGTTTCAAATATCGGTTCAATAGATGAATTTAATAGATTCTAAGGCAAATAGTAAACCATATACTAATCAGAGCCTTTGAGAAAGATGGCAGAAACTGAAGATACTCAGTTACAAAAAGCAATATTCGCACAGTACATTATGATGAAGAAGTTATTCATGGAGTTGGAAGAGGAGAGAGAAGCTTCAGCAACTTCTGCAAGTGCAGCCTTGTCAATGATTCGAAAGCTTCAGAAGGAGAAGGAGGAGCAGAGGATGGAAGCATGGCAGTACAAGAGGATAGCTGAGGAAAAGATTAGCCACAGTGACAAAGCACTGGAGATTCTACAGGAAGTCCTTCAACAGAAGGAACTGGAGAATTTTTATCTGAGAAACCAATTGCTGGTGTATA] consensusID : consensus_13867#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1040 fasta sequence [CCACACTGCCCCACACATCCATCGCCGGATTCGCCTCCGCCTCTCCCTTCCTCTCGTCGGCGGCAGCAAGCGGCGGCGGCGGCGGAGCTCCGGATTCGAGGGGACCAAGCATCGCCTGCAGAGGAATCCGCCTGAAGGATTGGACTTCGATTCCGGGAGGATCCCCGCCCGGATCCGAATTTTGGCCGACCGGGATCCCCGTCTCCTCCGCCGAGATGGGGAGCACCTCGTCGATGCTGACGCAGTACGACATCGAGGAGGTCCAGGACCACTGCGACCACGCCTTCTCGCAGCAGGAGATCGTGTCGCTGTACCACCGGTTCTGCCAGCTCGACCGGAATGGGGGCGGATTCGTCTCCGCCGAGGAATTCATGACCGTCCCCGAGTTCGCCGTGAACCCTCTCTCTCAGAGGCTTCTGAGGATGCTCGATGGGCTGAACTT-TAAGGAGTTCGTGGCGTTCTTATCGGCGTTTAGTCCCCGCGCAAGCCTGCAG-CAAAAAATTGAATTTATTTTCAGGGTTTATGACACTGACTGCAATGGGAAGGTGGCATTTGATGATATCTTGAGCATCTTGCGGGATCTGTCTGGTTCTTTTATGACTGAGCAGCAGAGGCAGAAAGTTTTGATCCATGTTTTAGAAGAAGCTGGCTATACAAAAGATTCAAATTTTACTCTGCCAGACTTTATGAAGATTCTTGACAATTCTGATGTGAAGATGGAGGTTGAAGTTCCTATTGACTAAGTACTTGTGTCATTGTTCTGTGCCCCGGCATGTATGTCAGCTTGAGAAGATGGATTAATTAGACCCTACTAGTAC--T----TTT--TTTATCATGTATTAAGCTGTAATTAGTGAAACATCTGTATTTGATCATTTTCAGGCTTAATTAACTTTTACCACCCGTGCATCCTATGACCTTTCAGGTACTGTTACCCTGTAAGGTCCCCTTCATTTTTTCCTAACAT-CTTTTCATATTGAAAACGTCTGTGATATTATGGCTTATTAATCCTTTCTAGTACCTTCCAAAAAAAAAAAAAAAAAAAA] [+] EMBL AK059843 [CCACACTGCCCCACACATCCATCGCCGGATTCGCCTCCGCCTCTCCCTTCCTCTCGTCGGCGGCAGCAAGCGGCGGCGGCGGCGGAGCTCCGGATTCGAGGGGACCAAGCATCGCCTGCAGAGGAATCCGCCTGAAGGATTGGACTTCGATTCCGGGAGGATCCCCGCCCGGATCCGAATTTTGGCCGACCGGGATCCCCGTCTCCTCCGCCGAGATGGGGAGCACCTCGTCGATGCTGACGCAGTACGACATCGAGGAGGTCCAGGACCACTGCGACCACGCCTTCTCGCAGCAGGAGATCGTGTCGCTGTACCACCGGTTCTGCCAGCTCGACCGGAATGGGGGCGGATTCGTCTCCGCCGAGGAATTCATGACCGTCCCCGAGTTCGCCGTGAACCCTCTCTCTCAGAGGCTTCTGAGGATGCTCGATGGGCTGAACTT TAAGGAGTTCGTGGCGTTCTTATCGGCGTTTAGTCCCCGCGCAAGCCTGCAG CAAAAAATTGAATTTATTTTCAGGGTTTATGACACTGACTGCAATGGGAAGGTGGCATTTGATGATATCTTGAGCATCTTGCGGGATCTGTCTGGTTCTTTTATGACTGAGCAGCAGAGGCAGAAAGTTTTGATCCATGTTTTAGAAGAAGCTGGCTATACAAAAGATTCAAATTTTACTCTGCCAGACTTTATGAAGATTCTTGACAATTCTGATGTGAAGATGGAGGTTGAAGTTCCTATTGACTAAGTACTTGTGTCATTGTTCTGTGCCCCGGCATGTATGTCAGCTTGAGAAGATGGATTAATTAGACCCTACTAGTAC T TTT TTTATCATGTATTAAGCTGTAATTAGTGAAACATCTGTATTTGATCATTTTCAGGCTTAATTAACTTTTACCACCCGTGCATCCTATGACCTTTCAGGTACTGTTACCCTGTAAGGTCCCCTTCATTTTTTCCTAACAT CTTTTCATATTGAAAACGTCTGTGA ] [+] EMBL CA756489 [ GCCTCCGCCTCTCCCTTCCTCTCGTCGGCGGCAGCAAGCGGCGGCGGCGGCGGAGCTCCGGATTCGAGGGGACCAAGCATCGCCTGCAGAGGAATCCGCCTGAAGGATTGGACTTCGATTCCGGGAGGATCCCCGCCCGGATCCGAATTTTGGCCGACCGGGATCCCCGTCTCCTCCGCCGAGATGGGGAGCACCTCGTCGATGCTGACGCAGTACGACATCGAGGAGGTCCAGGACCACTGCGACCACGCCTTCTCGCAGCAGGAGATCGTGTCGCTGTACCACCGGTTCTGCCAGCTCGACCGGAATGGGGGCGGATTCGTCTCCGCCGAGGAATTCATGACCGTCCCCGAGTTCGCCGTGAACCCTCTCTCTCAGAGGCTTCTGAGGATGCTCGATGGGCTGAACTT TAAGGAGTTCGTGGCGTTCTTATCGGCGTTTAGTCCCCGCGCAAGCCTGCAG CANAAAATTGAATTTATTTTCAGGGTTTATGACACTGACTGCAATGGGAAGGTGGCATTTGATGATATCTTGAGCATCTTGCGGGATCTGTCTGGTTCTTTTATGACTGAGCAGCAGAGGCAGAAAGTTTTGATC ] [+] EMBL AK102411 [ TCCGGATTCGAGGGGACCAAGCATCGCCTGCAGAGGAATCCGCCTGAAGGATTGGACTTCGATTCCGGGAGGATCCCCGCCCGGATCCGAATTTTGGCCGACCGGGATCCCCGTCTCCTCCGCCGAGATGGGGAGCACCTCGTCGATGCTGACGCAGTACGACATCGAGGAGGTCCAGGACCACTGCGACCACGCCTTCTCGCAGCAGGAGATCGTGTCGCTGTACCACCGGTTCTGCCAGCTCGACCGGAATGGGGGCGGATTCGTCTCCGCCGAGGAATTCATGACCGTCCCCGAGTTCGCCGTGAACCCTCTCTCTCAGAGGCTTCTGAGGATGCTCGATGGGCTGAACTT TAAGGAGTTCGTGGCGTTCTTATCGGCGTTTAGTCCCCGCGCAAGCCTGCAG CAAAAAATTGAATTTATTTTCAGGGTTTATGACACTGACTGCAATGGGAAGGTGGCATTTGATGATATCTTGAGCATCTTGCGGGATCTGTCTGGTTCTTTTATGACTGAGCAGCAGAGGCAGAAAGTTTTGATCCATGTTTTAGAAGAAGCTGGCTATACAAAAGATTCAAATTTTACTCTGCCAGACTTTATGAAGATTCTTGACAATTCTGATGTGAAGATGGAGGTTGAAGTTCCTATTGACTAAGTACTTGTGTCATTGTTCTGTGCCCCGGCATGTATGTCAGCTTGAGAAGATGGATTAATTAGACCCTACTAGTAC T TTT TTTATCATGTATTAAGCTGTAATTAGTGAAACATCTGTATTTGATCATTTTCAGGCTTAATTAACTTTTACCACCCGTGCATCCTATGACCTTTCAGGTACTGTTACCCTGTAAGGTCCCCTTCATTTTTTCCTAACAT CTTTTCATATTGAAAACGTCTGTGATATTATGGCTTATTAATCCTTTCTAGTACCTTCC ] [+] EMBL BI799197 [ TCTCAGAGGCTTCTGAGGATGCTAGATGGCCTGAACTTCCAAGGAGTTCGTGGCGTTCTAATCGGCGTTTAGTCCCCGCGCAAGCCTGCAGCCTAAAAATTGAATTTATTTTCAGGGTTTATGACACCGACTGCAATGGGAAGGTGGCATTTGATGATATCTTGAGCATCTTGCGGGATCTGACTGGTTCTTTTATGACTGAGCAGCAGAGGCAGAAAGTTTTGATCCATGTTTTAGAAGAAGCTGGCTATACCAAAGATTCAAAATTTACTCTGCCAGACTTTATGAAGATTCTTGACAATTCTGATGTGAAGATGGAGGTTGAAGTTCCAATTGACTAAGTACTTGTGTCATTGTTCTGTGCCCCGGCATGTATGTCAGCTTGAGAAGATGGATTAATTAGACCCTACTAGTACTTT TTT TTTATCATGTATTAAGCTGTAATTAGTGAAACATCTGTATTTGATCATTTTCAGGCTTAATTAACTTTTACCACCCGTGCATCCTATGACCTTTCAGGTACTGTTACCCTGTAAGGTCCCCTTCATTTTTTCCTAACAT CTTTTCATATTGAAAACGTCTGTGATATTAaaaa ] [+] EMBL BI804298 [ CAGA GCTTCTGAGGATGCTAGAT GGCTGAACTT CAAGGAGTTCGTGGCGTTCTTATCGGCGTTTAGTCCCCGCGCAAGCCTGCAG C AAAAATTGAATTTATTTTCAGGGTTTATGACACCGACTGCAATGGGAAGGTGGCATTTGATGATATCTTGAGCATCTTGCGGGATCTGACTGGTTCTTTTATGACTGAGCAGCAGAGGCAGAAAGTTTTGATCCATGTTTTAGAAGAAGCTGGCTATACCAAAGATTCAAAATTTACTCTGCCAGACTTTATGAAGATTCTTGAC ATTCTGATGTGAAGATGGAGGTTGAAGTTCCAATTGACTAAGTACTTGTGTCATTGTTCTGTGCCCCGGCATGTATGTCAGCTTGAGAAGATGGATTAATTAGACCCTACTAGTAC TTCTCTTT TTTATCATGTATTAAGCTGTAATTAGTGAAACATCTGTATTTGATCATTTTCAGGCTTAATTAACTTTTACCACCCGTGCATCCTATGACCTTTCAGGTACTGTTACCCTGTAAGGTCCCCTTCATTTTTTCCTAACAT CTTTTCATATTGAAAACGTCTGTGATATTAaaaa ] [+] EMBL BI802981 [ CTGAGGATGCTAGATGGGCTGAACTT CAAGGAGTTCGTGGCGTTCTTATCGGCGTTTAGTCCCCGCGCAAGCCTGCA C AAAAATTGAATTTATTTTCAGGGTTTATGACACCGACTGCAATGGGAAGGTGGCATTTGATGATATCTTGAGCATCTTGCGGGATCTGACTGGTTCTTTTATGACTGAGCAGCAGAGGCAGAAAGTTTTGATCCATGTTTTAGAAGAAGCTGGCTATACCAAAGATTCAAAATTTACTCTGCCAGACTTTATGAAGATTCTTGAC ATTCTGATGTGAAGATGGAGGTTGAAGTTCCCATTGACTAAGTACTTGTGTCATTGTTCTGTGCCCCGGCATGTATGTCAGCTTGAGAAGATGGATTAATTAGACCCTACTAGTAC T TTTCCCCTATCATGTATTAAGCTGTAATTAGTGAAACATCTGTATTTGATCATTTTCAGGCTTAATTAACTTTTACCACCCGTGCATCCTATGACCTTTCAGGTACTGTTACCCTGTAAGGTCCCCTTCATTTTTTCCTAACATCCCCCTCATATTGAACACGTCTGTGATATTAaaaa ] [+] EMBL CB000355 [ TGCAG CAAAAAATTGAATTTATTTTCAGGGTTCATGACACTGACTGCAATGGGAAGGTGGCATTTGATGATATCTTGAGCATCTTGCGGGATCTGTCTGGTTCTTTTATGACTGAGCAGCAGAGGCAGAAAGTTTTGATCCATGTTTTAGAAGAAGCTGGCTATACAAAAGATTCAAATTTTACTCTGCCAGACTTTATGAAGATTCTTGACAATTCTGATGTGAAGATGGAGGTTGAAGTTCCTATTGACTAAGTACTTGTGTCATTGTTCTGTGCCCCGGCATGTATGTCAGCTTGAGAAGATGGATTAATTAGACCCTACTAGTAC T TTT TTTATCATGTATTAAGCTGTAATTAGTGAAACATCTGTATTTGATCATTTTCAGGCTTAATTAACTTTTACCACCCGTGCATCCTATGACCTTTCAGGTACTGTTACCCTGTAAGGTCCCCTTCATTTTTTCCTAACAT CTTTTCATATTGAAAACGTCTGTGATATTATGGCTTATTAATCCTTTCTAGTACCTTCCAAAAAAAAAAAAAAAAAAAA] [+] EMBL CB000170 [ TGCAG CAAAAAATTGAATTTATTTTCAGGGTTTCTGACACTGACTGCAATGGGAAGGTGGCATTTGATGATATCTTGAGCATCTTGCGGGATCTGTCTGGTTCTTTTATGACTGAGCAGCAGAGGCAGAAAGTTTTGATCCATGTTTTAGAAGAAGCTGGCTATACAAAAGATTCAAATTTTACTCTGCCAGACTTTATGAAGATTCTTGACAATTCTGATGTGAAGATGGAGGTTGAAGTTCCTATTGACTAAGTACTTGTGTCATTGTTCTGTGCCCCGGCATGTATGTCAGCTTGAGAAGATGGATTAATTAGACCCTACTAGTAC T TTT TTTATCATGTATTAAGCTGTAATTAGTGAAACATCTGTATTTGATCATTTTCAGGCTTAATTAACTTTTACCACCCGTGCATCCTATGACCTTTCAGGTACTGTTACCCTGTAAGGTCCCCTTCATTTTTTCCTAACAT CTTTTCATATTGAAAACGTCTGTGATATTATGGCTTATTAATCCTTTCTAGTACCTTCCAAAAAAAAAAAAAAAAAAAA] [+] EMBL CB000675 [ GCAG CAAAAAATTGAATTTATTTTCAGGGTTTATGACACTGACTGCAATGGGAAGGTGGCATTTGATGATATCTTGAGCATCTTGCGGGATCTGTCTGGTTCTTTTATGACTGAGCAGCAGAGGCAGAAAGTTTTGATCCATGTTTTAGAAGAAGCTGGCTATACAAAAGATTCAAATTTTACTCTGCCAGACTTTATGAAGATTCTTGACAATTCTGATGTGAAGATGGAGGTTGAAGTTCCTATTGACTAAGTACTTGTGTCATTGTTCTGTGCCCCGGCATGTATGTCAGCTTGAGAAGATGGATTAATTAGACCCTACTAGTAC T TTT TTTATCATGTATTAAGCTGTAATTAGTGAAACATCTGTATTTGATCATTTTCAGGCTTAATTAACTTTTACCACCCGTGCATCCTATGACCTTTCAGGTACTGTTACCCTGTAAGGTCCCCTTCATTTTTTCCTAACAT CTTTTCATATTGAAAACGTCTGTGATATTATGGCTTATTAATCCTTTCTAGTACCTTCCAAAANAAAAAAAAAAAAAAA] [-] EMBL CF337469 [ attgaatGGTTTATGACACTGACTGCAATGGGAAGGTGGCATTTGATGATATCTTGAGCATCTTGCGGGATCTGTCTGGTTCTTTTATGACTGAGCAGCAGAGGCAAAAAGTTTTGATCCATGTTTTAGAAGAAGCTGGCTATACAAAAGATTCAAATTTTACTCTGCCAGACTTTATGAAGATTCTTGACAATTCTGATGTGAAGATGGAGGTTGAAGTTCCTATTGACTAAGTACTTGTGTCATTGTTCTGTGCCCCGGCATGTATGTCAGCTTGAGAAGATGGATTAATTAGACCCTACTAGTACT T TTT TTTATCATGTATTAAGCTGTAATTAGTGAAACATCTGTATTTGATCATTTTCAGGCTTAATTAACTTTTACCAaaaaa ] consensusID : consensus_13867#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 675 fasta sequence [TGCCCCCCGGTTCCCGGTTCGCCGATGGGGCGCGATTCTTCTCCCCGGGAATTCTCTGCCTCCCGGTTTCCCTGGACCCTTTCTCTCAAAAACTTTTTAAGAATCTTAAAATGCCTGAACTTCCAAGAATTTCTGCCTTCTTATCGGCGTTTAGTCCCCGCGCAACCTGCACAAAAAATTGAATTTATTTTCAGGGTTTATGACACCGACTCCAATGGGAAGGTGGCATTTGATGATATCTTGAGCATCTTGCGGGATCTGACTGGTTCTTTTATGACTGAGCAGCAGAGGCAGAAAGTTTTGATCCATGTTTTAGAAGAAGCTGGCTATACCAAAGATTCAAATTTACTCTGCCAGACTTTATGAAGATTCTTGACATTCTGATGTGAAGATGGAGGTTGAAGTTCCATTGACTAAGTACTTGTGTCATTGTTCTGTGCCCCGGCATGTATGTCAGCCTTGAGAAGATGGATTAATTAGACCCTACTAGTACTTTTTCTCTTTATCATGTATTAAGCTGTAATTAGTGAAACATCTGTATTTGATCATTTTCAGGCTTAATTAACTTTTACCACCCGTGCATCCTATGACCTTTCAGGTACTGTTACCCTGTAAGGTCCCCTTCATTTTTTCCTAACATCTTCTTCATATTGAAAACGTCTGTGATATTAAAAA] [+] EMBL BI803303 [TGCCCCCCGGTTCCCGGTTCGCCGATGGGGCGCGATTCTTCTCCCCGGGAATTCTCTGCCTCCCGGTTTCCCTGGACCCTTTCTCTCAAAAACTTTTTAAGAATCTTAAAATGCCTGAACTTCCAAGAATTTCTGCCTTCTTATCGGCGTTTAGTCCCCGCGCAACCTGCACAAAAAATTGAATTTATTTTCAGGGTTTATGACACCGACTCCAATGGGAAGGTGGCATTTGATGATATCTTGAGCATCTTGCGGGATCTGACTGGTTCTTTTATGACTGAGCAGCAGAGGCAGAAAGTTTTGATCCATGTTTTAGAAGAAGCTGGCTATACCAAAGATTCAAATTTACTCTGCCAGACTTTATGAAGATTCTTGACATTCTGATGTGAAGATGGAGGTTGAAGTTCCATTGACTAAGTACTTGTGTCATTGTTCTGTGCCCCGGCATGTATGTCAGCCTTGAGAAGATGGATTAATTAGACCCTACTAGTACTTTTTCTCTTTATCATGTATTAAGCTGTAATTAGTGAAACATCTGTATTTGATCATTTTCAGGCTTAATTAACTTTTACCACCCGTGCATCCTATGACCTTTCAGGTACTGTTACCCTGTAAGGTCCCCTTCATTTTTTCCTAACATCTTCTTCATATTGAAAACGTCTGTGATATTAAAAA] consensusID : consensus_13867#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 514 fasta sequence [TTTTCAGGTTTATGACCCCGACTGCAATGGGAAGGTGCCACTTTGATGATATCTTGAGCATCTTCGCGGGATCTGACTGGTTCTTTTATGACTGGACACGCAGAGGCAGAAAGTCTTTGGATCCATGGTTTTAGAAGAAGCTGGGCTATACCAAAGATTCCAAAATGTTGACTCTGGCCAGACTTTATGGAAGATTCTGTGGACAATTGCTGGATGGTGGAAGATGGGAGGTTGAAGTGTGCCAATTGGACTAAGTACTTGTGTCATTGTTCTGTGCCCCGGCATGTATGTCAGCTTGAGAAGATGGGATTAATTAGACCCTACTAGTACTTTTTTTGTGTATCATGTATTAAGCTGGTAATTAGTGAAACATCTGGTATTTGGATCATTTTCAGGCTTAATTAACTTTTACCACCCGTGCATCCTATGACCTTTCAGGTACTGTTACCCTGTAAGGTCCCCTTCATTTTTTCCTAACATCTTTTCATATTGAAAACGTCTGTGATATTAAAAA] [+] EMBL BI803232 [TTTTCAGGTTTATGACCCCGACTGCAATGGGAAGGTGCCACTTTGATGATATCTTGAGCATCTTCGCGGGATCTGACTGGTTCTTTTATGACTGGACACGCAGAGGCAGAAAGTCTTTGGATCCATGGTTTTAGAAGAAGCTGGGCTATACCAAAGATTCCAAAATGTTGACTCTGGCCAGACTTTATGGAAGATTCTGTGGACAATTGCTGGATGGTGGAAGATGGGAGGTTGAAGTGTGCCAATTGGACTAAGTACTTGTGTCATTGTTCTGTGCCCCGGCATGTATGTCAGCTTGAGAAGATGGGATTAATTAGACCCTACTAGTACTTTTTTTGTGTATCATGTATTAAGCTGGTAATTAGTGAAACATCTGGTATTTGGATCATTTTCAGGCTTAATTAACTTTTACCACCCGTGCATCCTATGACCTTTCAGGTACTGTTACCCTGTAAGGTCCCCTTCATTTTTTCCTAACATCTTTTCATATTGAAAACGTCTGTGATATTAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13867#2 ------------------------------------------------------------ consensus_13867#3 ------------------------------------------------------------ consensus_13867#1 -----CCACACTGCCCCACACATCCATCGCCGGATTCGCCTCCGCCTCTCCCTTCCTCTC 55 consensus_13867#0 GAGTAGAAAACTGCCCCACACATCCATCGCCGGATTCGCCTCCGCCTCTCCCTTCCTCTC 60 consensus_13867#2 ------------------------------------------------------------ consensus_13867#3 ------------------------------------------------------------ consensus_13867#1 GTCGGCGGCAGCAAGCGGCGGCGGCGGCGGAGCTCCGGATTCGAGGGGACCAAGCATCGC 115 consensus_13867#0 GTCGGCGGCAGCAAGCGGCGGCGGCGGCGGAGCTCCGGATTCGAGGGGACCAAGCATCGC 120 consensus_13867#2 ------------------------------------------------------------ consensus_13867#3 ------------------------------------------------------------ consensus_13867#1 CTGCAGAGGAATCCGCCTGAAGGATTGGACTTCGATTCCGGGAGGATCCCCGCCCGGATC 175 consensus_13867#0 CTGCAGAGGAATCCGCCTGAAGGATTGGACTTCGATTCCGGGAGGATCCCCGCCCGGATC 180 consensus_13867#2 ------------------------------------------------------------ consensus_13867#3 ------------------------------------------------------------ consensus_13867#1 CGAATTTTGGCCGACCGGGATCCCCGTCTCCTCCGCCGAGATGGGGAGCACCTCGTCGAT 235 consensus_13867#0 CGAATTTTGGCCGACCGGGATCCCCGTCTCCTCCGCCGAGATGGGGAGCACCTCGTCGAT 240 consensus_13867#2 ------------------------------------------------------------ consensus_13867#3 ------------------------------------------------------------ consensus_13867#1 GCTGACGCAGTACGACATCGAGGAGGTCCAGGACCACTGCGACCACGCCTTCTCGCAGCA 295 consensus_13867#0 GCTGACGCAGTACGACATCGAGGAGGTCCAGGACCACTGCGACCACGCCTTCTCGCAGCA 300 consensus_13867#2 ---------------------TGCCCCCCGGTTCCCGGTTCGCCGATGGGGCGCGATTCT 39 consensus_13867#3 ------------------------------------------------------------ consensus_13867#1 GGAGATCGTGTCGCTGTACCACCGGTTCTGCCAGCTCGACCGGAATGGGGGCGGATTCGT 355 consensus_13867#0 GGAGATCGTGTCGCTGTACCACCGGTTCTGCCAGCTCGACCGGAATGGGGGCGGATTCGT 360 consensus_13867#2 TCTCCCCGGGAATTCTCTG-----CCTCCCGGTTTCCCTGGACCCTTTCTCTCAAAAACT 94 consensus_13867#3 ------------------------------------------------------------ consensus_13867#1 CTCCGCCGAGGAATTCATGACCGTCCCCGAGTTCGCCGTGAACCCTCTCTCTCAGAGGCT 415 consensus_13867#0 CTCCGCCGAGGAATTCATGACCGTCCCCGAGTTCGCCGTGAACCCTCTCTCTCAGAGGCT 420 consensus_13867#2 TTTTAAGAATCTTAAAATGCCTGAACTTCCAAGAATTTCTGCCTTCTTATCGGCGTTTAG 154 consensus_13867#3 ------------------------------------------------------------ consensus_13867#1 TCTGAGGATGCTCGATGGGCTGAACTTTAAGGAGTTCGTGGCGTTCTTATCGGCGTTTAG 475 consensus_13867#0 TCTGAGGATGCTCGATGGGCTGAACTTTAAGGAGTTCGTGGCGTTCTTATCGGCGTTTAG 480 consensus_13867#2 TCCCCGCGCAA-CCTGCA-CAAAAAATTGAATTTATTTTCAGGGTTTATGACACCGACTC 212 consensus_13867#3 -----------------------------------TTTTCAGG-TTTATGACCCCGACTG 24 consensus_13867#1 TCCCCGCGCAAGCCTGCAGCAAAAAATTGAATTTATTTTCAGGGTTTATGACACTGACTG 535 consensus_13867#0 TCCCCGCGCAAGCCTGCAGCAAAAAA----------TTGAATGGTTTATGACACTGACTG 530 ** * * ******** * **** consensus_13867#2 CAATGGGAAGGTGGCA-TTTGATGATATCTTGAGCATCTT-GCGGGATCTGACTGGTTCT 270 consensus_13867#3 CAATGGGAAGGTGCCACTTTGATGATATCTTGAGCATCTTCGCGGGATCTGACTGGTTCT 84 consensus_13867#1 CAATGGGAAGGTGGCA-TTTGATGATATCTTGAGCATCTT-GCGGGATCTGTCTGGTTCT 593 consensus_13867#0 CAATGGGAAGGTGGCA-TTTGATGATATCTTGAGCATCTT-GCGGGATCTGTCTGGTTCT 588 ************* ** *********************** ********** ******** consensus_13867#2 TTTATGACTGAGCA-GCAGAGGCAGAAAGTTTT--GATCCATG-TTTTAGAAGAAGCTGG 326 consensus_13867#3 TTTATGACTGGACACGCAGAGGCAGAAAGTCTTTGGATCCATGGTTTTAGAAGAAGCTGG 144 consensus_13867#1 TTTATGACTGAGCA-GCAGAGGCAGAAAGTTTT--GATCCATG-TTTTAGAAGAAGCTGG 649 consensus_13867#0 TTTATGACTGAGCA-GCAGAGGCAGAAAGTTTT--GATCCATG-TTTTAGAAGAAGCTGG 644 ********** ** *************** ** ******** **************** consensus_13867#2 -CTATACCAAAGATTCAAA----TTTACTCTG-CCAGACTTTATG-AAGATTCT--TGAC 377 consensus_13867#3 GCTATACCAAAGATTCCAAAATGTTGACTCTGGCCAGACTTTATGGAAGATTCTGTGGAC 204 consensus_13867#1 -CTATACAAAAGATTCAAAT---TTTACTCTG-CCAGACTTTATG-AAGATTCT--TGAC 701 consensus_13867#0 -CTATACAAAAGATTCAAAT---TTTACTCTG-CCAGACTTTATG-AAGATTCT--TGAC 696 ****** ******** ** ** ****** ************ ******** *** consensus_13867#2 ATTC------TGATGTGAAGATGGAGGTTGAAGT---TCCATTG-ACTAAGTACTTGTGT 427 consensus_13867#3 AATTGCTGGATGGTGGAAGATGGGAGGTTGAAGTGTGCCAATTGGACTAAGTACTTGTGT 264 consensus_13867#1 AATTC-----TGATGTGAAGATGGAGGTTGAAGT--TCCTATTG-ACTAAGTACTTGTGT 753 consensus_13867#0 AATTC-----TGATGTGAAGATGGAGGTTGAAGT--TCCTATTG-ACTAAGTACTTGTGT 748 * * ** ** * ************ * **** *************** consensus_13867#2 CATTGTTCTGTGCCCCGGCATGTATG-TCAGCCTTGAGAAGATGG-ATTAATTAGACCCT 485 consensus_13867#3 CATTGTTCTGTGCCCCGGCATGTATG-TCAGC-TTGAGAAGATGGGATTAATTAGACCCT 322 consensus_13867#1 CATTGTTCTGTGCCCCGGCATGTATG-TCAGC-TTGAGAAGATGG-ATTAATTAGACCCT 810 consensus_13867#0 CATTGTTCTGTGCCCCGGCATGCTTAATTAACTTTTACCACCCGTGCATCCTATGACCTT 808 ********************** * * * * ** * * * * * **** * consensus_13867#2 ACTAGTACTTTTTCTCTTTA---------TCATGTATTA-----AGCTG-TAATTAGTGA 530 consensus_13867#3 ACTAGTACTTTTTTTGTGTA---------TCATGTATTA-----AGCTGGTAATTAGTGA 368 consensus_13867#1 ACTAGTACTTTTTTT----A---------TCATGTATTA-----AGCTG-TAATTAGTGA 851 consensus_13867#0 TCAGGTACTGTTACCCTGTAAGGTCCCCTTCATTTTTTCCTAACATCTTTTCATATTGAA 868 * ***** ** * **** * ** * ** * ** * consensus_13867#2 AACATCTG---TATT-TG-ATCATTTTCAGGCTTAATTAACTTTTACCACCCGTGCA--- 582 consensus_13867#3 AACATCTGG--TATT-TGGATCATTTTCAGGCTTAATTAACTTTTACCACCCGTGCA--- 422 consensus_13867#1 AACATCTG---TATT-TG-ATCATTTTCAGGCTTAATTAACTTTTACCACCCGTGCA--- 903 consensus_13867#0 AACGTCTGTGATATTATGGCTTATTAATCCTTTCTAGTACCTTCCATTATGAGTGAAAAA 928 *** **** **** ** * *** * * ** *** * * *** * consensus_13867#2 ----TCCTATGACCTTTCAGGTACTGTTACCCTGTAAGGTCCCCTTCATTTTTTCCTAAC 638 consensus_13867#3 ----TCCTATGACCTTTCAGGTACTGTTACCCTGTAAGGTCCCCTTCATTTTTTCCTAAC 478 consensus_13867#1 ----TCCTATGACCTTTCAGGTACTGTTACCCTGTAAGGTCCCCTTCATTTTTTCCTAAC 959 consensus_13867#0 AATGTTCTTTGTTCTCTCGCATCGAGGATATCTGCAAATTGGAGCAGGAACAATTTGGGC 988 * ** ** ** ** * * *** ** * * * consensus_13867#2 ATCTTCTTCATATTGAAAACGTCTGTGATATTAAAAA----------------------- 675 consensus_13867#3 ATCTT-TTCATATTGAAAACGTCTGTGATATTAAAAA----------------------- 514 consensus_13867#1 ATCTT-TTCATATTGAAAACGTCTGTGATATTATGGCTTATTAATCCTTTCTAGTACCTT 1018 consensus_13867#0 TTGCTTGGATCATTGTCAATCCATGCCTTACCAAAATATTGGCATGCTAAATTTTTTTTG 1048 * * **** ** ** ** * consensus_13867#2 ------------------------------------------------------------ consensus_13867#3 ------------------------------------------------------------ consensus_13867#1 CCAAAAAAAAAAAAAAAAAAAA-------------------------------------- 1040 consensus_13867#0 GTGGAGTATGATTGGTTGGTTTGTTGCCAAGTTGTTTGAGCTCATGGTTCTCTTGCCATT 1108 consensus_13867#2 ------------------------------------------------------------ consensus_13867#3 ------------------------------------------------------------ consensus_13867#1 ------------------------------------------------------------ consensus_13867#0 TTTTTTTTGATCCCCAGAGGCCCAGTTCAAATGCACGTCTAGCTTCTCCAGCTACTAATC 1168 consensus_13867#2 ------------------------------------------------------------ consensus_13867#3 ------------------------------------------------------------ consensus_13867#1 ------------------------------------------------------------ consensus_13867#0 TTCTGCATGGCAAGTTTAGAGGCAGTAATCCAAAAACAAGCCCTTTATCTCGTCGTACAA 1228 consensus_13867#2 ------------------------------------------------------------ consensus_13867#3 ------------------------------------------------------------ consensus_13867#1 ------------------------------------------------------------ consensus_13867#0 TGGGCAATGCAACAATATTCATTTCTCTAGGTCAATATGGCTAACCAAAGGACATGCTGC 1288 consensus_13867#2 ------------------------------------------------------------ consensus_13867#3 ------------------------------------------------------------ consensus_13867#1 ------------------------------------------------------------ consensus_13867#0 TCTGGCTTTTTATCTGCCATCCTCATGTTTGTTGGTATTCCAGGCAGACTGGTGAAGAGT 1348 consensus_13867#2 ------------------------------------------------------------ consensus_13867#3 ------------------------------------------------------------ consensus_13867#1 ------------------------------------------------------------ consensus_13867#0 AAATAGGTTTGCTCAGCTCAGATGACTCCAAATTCACATCCCAAAAATAAGGAACACCTT 1408 consensus_13867#2 ------------------------------------------------------------ consensus_13867#3 ------------------------------------------------------------ consensus_13867#1 ------------------------------------------------------------ consensus_13867#0 CCTGTCTTTCTCCCTCTAAAGTTGAGGTCATCAATGTTTTCTCCTATTAATAGACGCTAA 1468 consensus_13867#2 ------------------------------------------------------------ consensus_13867#3 ------------------------------------------------------------ consensus_13867#1 ------------------------------------------------------------ consensus_13867#0 GCTGATTACCTGCACTTCTCCCTAGCAGGGAGGAAGGAATGGCAGAACCATTGGAGAATT 1528 consensus_13867#2 ------------------------------------------------------------ consensus_13867#3 ------------------------------------------------------------ consensus_13867#1 ------------------------------------------------------------ consensus_13867#0 GGATCTTTGGCTCATCGTTGGGGGGTTTCAAATATCGGTTCAATAGATGAATTTAATAGA 1588 consensus_13867#2 ------------------------------------------------------------ consensus_13867#3 ------------------------------------------------------------ consensus_13867#1 ------------------------------------------------------------ consensus_13867#0 TTCTAAGGCAAATAGTAAACCATATACTAATCAGAGCCTTTGAGAAAGATGGCAGAAACT 1648 consensus_13867#2 ------------------------------------------------------------ consensus_13867#3 ------------------------------------------------------------ consensus_13867#1 ------------------------------------------------------------ consensus_13867#0 GAAGATACTCAGTTACAAAAAGCAATATTCGCACAGTACATTATGATGAAGAAGTTATTC 1708 consensus_13867#2 ------------------------------------------------------------ consensus_13867#3 ------------------------------------------------------------ consensus_13867#1 ------------------------------------------------------------ consensus_13867#0 ATGGAGTTGGAAGAGGAGAGAGAAGCTTCAGCAACTTCTGCAAGTGCAGCCTTGTCAATG 1768 consensus_13867#2 ------------------------------------------------------------ consensus_13867#3 ------------------------------------------------------------ consensus_13867#1 ------------------------------------------------------------ consensus_13867#0 ATTCGAAAGCTTCAGAAGGAGAAGGAGGAGCAGAGGATGGAAGCATGGCAGTACAAGAGG 1828 consensus_13867#2 ------------------------------------------------------------ consensus_13867#3 ------------------------------------------------------------ consensus_13867#1 ------------------------------------------------------------ consensus_13867#0 ATAGCTGAGGAAAAGATTAGCCACAGTGACAAAGCACTGGAGATTCTACAGGAAGTCCTT 1888 consensus_13867#2 ---------------------------------------------------- consensus_13867#3 ---------------------------------------------------- consensus_13867#1 ---------------------------------------------------- consensus_13867#0 CAACAGAAGGAACTGGAGAATTTTTATCTGAGAAACCAATTGCTGGTGTATA 1940 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||