These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13871#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 14 consensus length = 953 fasta sequence [GACACTGCATGGACTGAGGAGTAGAAAAGAAAAGAGAGAGCAGCAGCGAGAGACGAACAAAAAACAGAATCCATCGCCATAATCGAAGGTTCGCTCTTGCTTCCACCCCGCAATCCACATGGAGAACGAATTCCAGGATGGTAAGACGGAGGTGATAGAAGCATGGTACATGG-ATGATAGCGAAGAGGACCAGAGGCTTCCTCATCACCGCGAACCCAAAGAATTCATTCATGTTGATAAGCTTACAGAACTAGGAGTAATCAGCTGGCGCCTAAATCCTGATAACTGGGAGAATTGCGAGAACCTGAAGAGAATCCGCGAAGCCAG-AGGTTACTC-TTATGT-GGACATTTGTG-ATGTGTGCCCAGA-GAAGCTGCCAAATTATGAAACTAAGAT-CAAGAGTTTCTTTGAAGAACACCTGCATACCGATGAAGAAATACGCTATTGTCTTGAAGGGAGTGGATACTTTGATGTGAGAGACCAAAA-TGATCAGTGGATTCGTATAGCACTGAAGAAAGGAGGCATGATTGTTCTGCCTGCAGGGATGTACCACCGCTTTACGTTGGACACCGACAACTATATCAAGGCAATGCGACTGTTTGTTGGCGATCCTGTTTGGACACCCTACAACCGTCCCCATGACCATCTTCCTGCAAGAAAGGAGTTTTTGGCTAAACTTCTCAAGTCAGAAGGTGAAAATCAAGCAGTTGAAGGCTTCTGAGGGTTTTGTTGGGCTCCTGCACTGCGGTTCTATATTCAACCTGAATAAGATGTGCTATAGCAATGTAAATTTAGCACAGTGGCTATGGTCGCCACTCACCAACTTGAAGTGAAAGATTTAATGATTTTTGTTAATTCTTATGTATCAATCGGCATATAGCATTTCCGAAATGTGTTTTCAATAAACAGAAAGTAAGAGTCATGAAGCTGAAAATGAACAAAATTTCTCAAAAAAA] [+] EMBL CF322075 [GACACTGCATGGACTGAGGAGTAGAAAAGAAAAGAGAGAGCAGCAGCGAGAGACGAACAAAAAACAGAATCCATCGCCATAATCGAAGGTTCGCTCTTGCTTCCACCCCGCAATCCACATGGAGAACGAATTCCAGGATGGTAAGATGGAGGTGATAGAAGCATGGTACATGG ATGATAGCGAAGAGGACCAGAGGCTTCCTCATCACCGCGAACCCAAAGAATTCATTCATGTTGATAAGCTTACAGAACTAGGAGTAATCAGCTGGCGCCTAAATCCTGATAACTGGGAGAATTGCGAGAACCTGAAGAGAATCCGCGAAGCCAG AGGTTACTC TTATGT GGACATTTGTG ATGTGTGCCCAGA GAAGCTGCCAAATTATGAAACTAAGAT CAAGAGTTTCTTTGAAGAACACCTGCATACCGATGAAGAAATACGCTATTGTCTTGAAGGGAGTGGATACTTTGATGTGAGAGACCAAAA TGATCAGTGGATTCGTATAGC ] [+] EMBL AK102331 [ GAGAGCAGCAGCGAGAGACGAACAAAAAACAGAATCCATCGCCATAATCGAAGGTTCGCTCTTGCTTCCACCCCGCAATCCACATGGAGAACGAATTCCAGGATGGTAAGACGGAGGTGATAGAAGCATGGTACATGG ATGATAGCGAAGAGGACCAGAGGCTTCCTCATCACCGCGAACCCAAAGAATTCATTCATGTTGATAAGCTTACAGAACTAGGAGTAATCAGCTGGCGCCTAAATCCTGATAACTGGGAGAATTGCGAGAACCTGAAGAGAATCCGCGAAGCCAG AGGTTACTC TTATGT GGACATTTGTG ATGTGTGCCCAGA GAAGCTGCCAAATTATGAAACTAAGAT CAAGAGTTTCTTTGAAGAACACCTGCATACCGATGAAGAAATACGCTATTGTCTTGAAGGGAGTGGATACTTTGATGTGAGAGACCAAAA TGATCAGTGGATTCGTATAGCACTGAAGAAAGGAGGCATGATTGTTCTGCCTGCAGGGATGTACCACCGCTTTACGTTGGACACCGACAACTATATCAAGGCAATGCGACTGTTTGTTGGCGATCCTGTTTGGACACCCTACAACCGTCCCCATGACCATCTTCCTGCAAGAAAGGAGTTTTTGGCTAAACTTCTCAAGTCAGAAGGTGAAAATCAAGCAGTTGAAGGCTTCTGAGGGTTTTGTTGGGCTCCTGCACTGCGGTTCTATATTCAACCTGAATAAGATGTGCTATAGCAATGTAAATTTAGCACAGTGGCTATGGTCGCCACTCACCAACTTGATGTGAAAGATTTAATGATTTTTGTTAATTCTTATGTATCAATCGGCATATAGCATTTCCGAAATGTGTTTTCAATAAACAGAAAGTAAGAGT ] [+] EMBL AK103834 [ GCAGCGAGAGACGAACAAAAAACAGAATCCATCGCCATAATCGAAGGTTCGCTCTTGCTTCCACCCCGCAATCCACATGGAGAACGAATTCCAGGATGGTAAGACGGAGGTGATAGAAGCATGGTACATGG ATGATAGCGAAGAGGACCAGAGGCTTCCTCATCACCGCGAACCCAAAGAATTCATTCATGTTGATAAGCTTACAGAACTAGGAGTAATCAGCTGGCGCCTAAATCCTGATAACTGGGAGAATTGCGAGAACCTGAAGAGAATCCGCGAAGCCAG AGGTTACTC TTATGT GGACATTTGTG ATGTGTGCCCAGA GAAGCTGCCAAATTATGAAACTAAGAT CAAGAGTTTCTTTGAAGAACACCTGCATACCGATGAAGAAATACGCTATTGTCTTGAAGGGAGTGGATACTTTGATGTGAGAGACCAAAA TGATCAGTGGATTCGTATAGCACTGAAGAAAGGAGGCATGATTGTTCTGCCTGCAGGGATGTACCACCGCTTTACGTTGGACACCGACAACTATATCAAGGCAATGCGACTGTTTGTTGGCGATCCTGTTTGGACACCCTACAACCGTCCCCATGACCATCTTCCTGCAAGAAAGGAGTTTTTGGCTAAACTTCTCAAGTCAGAAGGTGAAAATCAAGCAGTTGAAGGCTTCTGAGGGTTTTGTTGGGCTCCTGCACTGCGGTTCTATATTCAACCTGAATAAGATGTGCTATAGCAATGTAAATTTAGCACAGTGGCTATGGTCGCCACTCACCAACTTGAAGTGAAAGATTTAATGATTTTTGTTAATTCTTATGTATCAATCGGCATATAGCATTTCCGAAATGTGTTTTCAATAAACAGAAAGTAAGAGTCATGAAGCTGAAAATGAAC ] [+] EMBL C27474 [ GAGACGAACAAAAAACAGAATCCATCGCCATAATCGAAGGTTCGCTCTTGCTTCCACCCCGCAATCCACATGGAGAACGAATTCCAGGATGGTAAGACGGAGGTGATAGAAGCATGGTACATGG ATGATAGCGAAGAGGACCAGAGGCTTCCTCATCACCGCGAACCCAAAGANTTCATTCATGTTGATAAGCTTACAGAACTAGGAGTAATCAGCTGGCGCCTAAATCCTGATAACTGGGAGANTTGCGAGAACCTGAAGAGAATCCGCGAAG CAG AGGTTACTC TTATGT GGACATTTGTGAATGTGTGCCCAGAGGAAGCTGCCAAATTATGAAACTAAGAT CAAGAGNTTCTTTGANGAACACCTGCATACCGATGAAGGAATACGCTATTGTCTTGAAGGGAGTGGATACTTTGATGTTAGGGACC AAA TGATCANTGGt ] [+] EMBL C28694 [ AGACGAACAAAAAACAGAATCCATCGCCATAATCGAAGGTTCGCTCTTGCTTCCACCCCGCAATCCACATGGAGAACGAATTCCAGGATGGTAAGACGGAGGTGATAGAAGCATGGTACATGGNATGATAGCGAAGAGGACCAGAGGCTTCCTCATCACCGCGAACCCAAAGAATTCATTCATGTTGATAAGCTTACAGAACTAGGAGTAATCAGCTGGCGCCTAAATCCTGATAACTGGGAGATTTGCGAGAACCTNAGGAGATTCCGCG AGCCAGAAGGTTACTCNTTATGT TGGCAATTtt ] [+] EMBL C28663 [ ACGAACAAAAAACAGAATCCATCGCCATAATCGAAGGTTCGCTCTTGCTTCCACCCCGCAATCCACATGGAGAACGAATTCCAGGATGGTAAGACGGAGGTGATAGAAGCATGGTACATGGAATGATAGCGAAGAGGACCAGAGGCTTCCTCATCACCGCGAACCCAAAGAATTCATTCATGTTGATAAGCTTACAGAACTAGGAGTAATCAGCTGGCGCCTAAATCCTGATAACTGGGAGAATTGCGAGAACCTGAAGAGAATCCGCGAAGCAAG AGGTTACTC TTATGTGGGACATTTGTN ATGTGTGCCCAGA GAAGCTGCCAAATTATGAAACTAAGAT CAAGAGTTTCTTTGAAGGACACCTGCATACCGATGAAGGAATACGCTATTGTNTTGAAGGGAGTTGGTACTTTGATGTTAGGGGCCAAAA TGATCAGTGGATTCG ] [+] EMBL AF050200 [ AAAAACAGAATCCATCGCCATAATCGAAGGTTCGCTCTTGCTTCCACCCCGCAATCCACATGGAGAACGAATTCCAGGATGGTAAGACGGAGGTGATAGAAGCATGGTACATGG ATGATAGCGAAGAGGACCAGAGGCTTCCTCATCACCGCGAACCCAAAGAATTCATTCCTGTTGATAAGCTTACAGAACTAGGAGTAATCAGCTGGCGCCTAAATCCTGATAACTGGGAGAATTGCGAGAACCTGAAGAGAATCCGCGAAGCCAG AGGTTACTC TTATGT GGACATTTGTG ATGTGTGCCCAGA GAAGCTGCCAAATTATGAAACTAAGAT CAAGAGTTTCTTTGAAGAACACCTGCATACCGATGAAGAAATACGCTATTGTCTTGAAGGGAGTGGATACTTTGATGTGAGAGACCAAAA TGATCAGTGGATTCGTATAGCACTGAAGAAAGGAGGCATGATTGTTCTGCCTGCAGGGATGTACCACCGCTTTACGTTGGACACCGACAACTATATCAAGGCAATGCGACTGTTTGTTGGCGATCCTGTTTGGACACCCTACAACCGTCCCCATGACCATCTTCCTGCAAGAAAGGAGTTTTTGGCTAAACTTCTCAAGTCAGAAGGTGAAAATCAAGCAGTTGAAGGCTTCTGAGGGTTTTGTTGGGCTCCTGCACTGCGGTTCTATATTCAACCTGAATAAGATGTGCTATAGCAATGTAAATTTAGCACAGTGGCTATGGTCGCCACTCACCAACTTGAAGTGAAAGATTTAATGATTTTTGTTAATTCTTATGTATCAATCGGCATATAGCATTTCCGAAATGTGTTTTCAATAAACAGgagtca ] [+] EMBL CF310754 [ GAATCCATCGCCATAATCGAAGGTTCGCTCTTGCTTCCACCCCGCAATCCACATGGAGAACGAATTCCAGGATGGTAAGACGGAGGTGATAGAAGCATGGTACATGG ATGATAGCGAAGAGGACCAGAGGCTTCCTCATCACCGCGAACCCAAAGAATTCATTCATGTTGATAAGCTTACAGAACTAGGAGTAATCAGCTGGCGCCTAAATCCTGGTAACTGGGAGAATTGCGAGAACCTGAAGAGAATCCGCGAAGCCAG AGGTTACTC TTATGT GGACATTTGTG ATGTGTGCCCAGA GAAGCTGCCAAATTATGAAACTAAGAT CAAGAGTTTCTTTGAAGAACACCTGCATACCGATGAAGAAATACGCTATTGTCTTGAAGGGAGTGGATACTTTGATGTGAGAGACCAAAA TGATCAGTGGATTCGTATATCACTGAAGAAAGGAGGCATGATTGTTCTGCCTGCAGGGATGTACCACCGCTTTACGTTGGACACCGACAACTATATCAAGGCAATGCGACTGTTTGTTGGCGATCCTGTTTGGACACC ] [+] EMBL AU100980 [ anA GAAGCTGCCAAATTATG AACTAAGATCCAAGAGTTTCTTTGAAGAACACNTGCATACCGATGAAGAAATACGCTATTGTCTTGAAGGAAGTGGATACTTTGATGTGAGAGACCAAAA TGATCAGTGGATTCGTATAGCACTGAAGAAAGGAGGCATGATTGTTCTGCCTGCAGGGATGTACCACCGCTTTACGTTGGACACCGACAACTATATCAAGGCAATGCGACTGTTTGTTGGCGATCCTGTTTGGACACCCTACAACCGTCCCCATGACCATCTTCCTGCAAGAAAGGAGTTTTTGGCTAAACTTCTCAAGTCAGAAGGTGAAAATCAAGCAGTTGAAGGCTTCTGAGGGTTTTGTTGGGCTCCTGCACTGCGGTTCTATATTCAACCTGAATAAGATGTGCTATAGCAATGTAAATTTAGCACAGTGGCTATGGTCGCCACTCACCAACTTGAAGTGAAAGATTTAATGATTTTTGTTAATTCTTATGTATCAATCGGCATATAGCATTTCCGAAATGTGTTTTCAATAAACAGAAAGTAAGAGTCATGAAGCTGAAAATGAACAAAATTTCTCAAAAAA ] [-] EMBL CF322076 [ TGAAGAAATACGCTATTGTCTTGAAGGGAGTGGATACTTTGATGTGAGAGACCAAAA TGATCAGTGGATTCGTATAGCACTGAAGAAAGGAGGCATGATTGTTCTGCCTGCAGGGATGTACCACCGCTTTACGTTGGACACCGACAACTATATCAAGGCAATGCGACTGTTTGTTGGCGATCCTGTTTGGACACCCTACAACCGTCCCCATGACCATCTTCCTGCAAGAAAGGAGTTTTTGGCTAAACTTCTCAAGTCAGAAGGTGAAAATCAAGCAGTTGAAGGCTTCTGAGGGTTTTGTTGGGCTCCTGCACTGCGGTTCTATATTCAACCTGAATAAGATGTGCTATAGCAATGTAAATTTAGCACAGTGGCTATGGTCGCCAATCACCAACTTGAAGTGAAAGATTTAATGATTTTTGTTAATTCTTATGTATCAATCGGCATATAGCATTTCCGAAATGTGTTTTCAATAAACAGAAAGTAAGAGTCATGAAGCTGAAAATGAACAAAATTTCTCAAAAAA ] [-] EMBL CF310755 [ GAAGAAATACGCTATTGTCTTGAAGGGAGTGGATACTTTGATGTGAGAGACCAAAATTGATCAGTGGATTCGTATATCACTGAAGAAAGGAGGCATGATTGTTCTGCCTGCAGGGATGTACCACCGCTTTACGTTGGACACCGACAACTATATCAAGGCAATGCGACTGTTTGTTGGCGATCCTGTTTGGACACCCTACAACCGTCCCCATGACCATCTTCCTGCAAGAAAGGAGTTTTTGGCTAAACTTCTCAAGTCAGAAGGTGAAAATCAAGCAGTTGAAGGCTTCTGAGGGTTTTGTTGGGCTCCTGCACTGCGGTTCTATATTCAACCTGAATAAGATGTGCTATAGCAATGTAAATTTAGCACAGTGGCTATGGTCGCCACTCACCAACTTGAAGTGAAAGATTTAATGATTTTTGTTAATTCTTATGTATCAATCGGCATATAGCATTTCCGAAATGTGTTTTCAATAAACAGAAAGTAAGAGTCATGAAGCTGGAAATGAACAAAATTTCTCAAAAAAA] [-] EMBL CF318313 [ GATTGTTCTGCCTGCAGGGATGTACCACCGCTTTACGTTGGACACCGTCAACTATATCAAGGCAATGCGACTGTTTGTTGGCGATCCTGTTTGGACACCCTACAACCGTCCCCATGACCATCTTCCTGCAAGAAAGGAGTTTTTGGATAAACTTTTCAAGTCAGAAGGTGAAAATCAAGCAGTTGAAGGCTTTTGAGGGTTTTGTTGGGCTCCTGCACTGCGGTTGTATATTCAACCTGAATAAGATGTGCTATAGCAATGTAAATTTAGCCCAGTGGTTATGGTCGCCACTCACCA ] [+] EMBL AU161404 [ ATCTTCCTGCAAGAAAGGAGTTTTTGGCTAAACTTCTCAAGTCAGAAGGTGAAAATCAAGCAGTTGAAGGCTTCTGAGGGTTTTGTTGGGCTCCTGCACTGCGGTTCTATATTCAACCTGAATAAGATGTGCTATAGCAATGTAAATTTAGCACAGTGGCTATGGTCGCCACTCACCAACTTGAAGTGAAAGATTTAATGATTTTTGTTAATTCTTATGTATCAATCGGCATATAGCATTTCCGAAATGTGTTTTCAATAAACAGAAAGTAAGAGTCATGAAGCTGAAAATGAACAAAATTTCTCAAAAAAA] [+] EMBL AU160851 [ TCCTGCAAGAAAGGAGTTTTTGGCTAAACTTCTCAAGTCAGAAGGTGAAAATCAAGCAGTTGAAGGCTTCTGAGGGTTTTGTTGGGCTCCTGCACTGCGGTTCTATATTCANCCTGAATAAGATGTGCTATAGCAATGTAAATTTAGCACAGTGGCTATGGTCGCCACTCACCAACTTGAAGTGAAAGATTTAATGATTTTTGTTAATTCTTATGTATCAATCGGCATATAGCATTTCCGAAATGTGTTTTCAATAAACAGAAAGTAAGAGTCATGAAGCTGAAAATGAACAAAATTTCTCAAAAA ] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||