These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13879#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 658 fasta sequence [CCCAACCCAACGCCTTAACCCTATAAACTTCCCTCTCCTTCCCCTTCCCCTTCCCCCGAATCCATCCTACCTCGCCGCAACAATCCAGAGAGATCATCGAGAGAGGAGTCCACCGGACCCATGAGGAGCGGCGGCGACGTCAAGTCCTTCCGGCAGCGTCAAGCCCACCGGCGGCGTGCCGGCGTCTCCAAGAAGGCGCCCGCGTCGCAGGCGACGACAGATCGCGCCGTCGAGGAGGCGGAGGATGAGGGGCGAGAGAGGATGGCTCGGGAGTTCGACATGGACATGCGGTAAGGAGCTAAGGGCCCTGCCTCGGCCTCACCCGCGCCGCCGCGCTCGGCCTCGCCCCACCGCCCGCCGTCATCGCCTTCTGCTCCGACGACCAGCCATGCCTCTGGGAGGGCCGCGTCTAGCTCTAGCAACACCATCCACCACCACCCGATCGGCCGATCCGCTTCCAGAAAATTATAGTGTTTATAAGTAGGAACAGCTTCTCCTCTGCTTCCATCTGCCACGCCTCGTGGTGCTTGATGATCGTGTGTTCTTATCTGAAATTTATGATGTTATTCTTCTCCCAGTTGGTATGATCTATGGCATTTTGATTTGATTACCTACAAACTCT-AAATCATGGTAAATTAATCCAAAAAAAAAAAACTCG] [+] EMBL CF339665 [CCCAACCCAACGCCTTAACCCTATAAACTTCCCTCTCCTTCCCCTTCCCCTTCCCCCGAATCCATCCTACCTCGCCGCAACAATCCAGAGAGATCATCGAGAGAGGAGTCCACCGGACCCATGAGGAGCGGCGGCGACGTCAAGTCCTTCCGGCAGCGTCAAGCCCACCGGCGGCGTGCCGGCGTCTCCAAGAAGGCGCCCGCGTCGCAGGCGACGACAGATCGCGCCGTCGAGGAGGCGGAGGATGAGGGGCGAGAGAGGATGGCTCGGGAGTTCGACATGGACATGCGGTAAGGAGCTAAGGGCCCTGCCTCGGCCTCACCCGCGCCGCCGCGCTCGGCCTCGCCCCACCGCCCGCCGTCATCGCCTTCTGCTCCGACGACCAGCCATGCCTCTGGGAGGGCCGCGTCTAGCTCTAGCAACACCATCCACCACCACCCGATCGGCCGATCCGCTTCCAGAAAATTATAGTGTTTATAAGTAGGAACAGCTTCTCCTCTGCTTCCATCTGCCACGCCTCGTGGTGCTTGATGATCGTGTGTTCTTATCTGAAATTTATGATGTTATTCTTCTCCCAGTTGGTATGATCTATGGCATTTTGATTTGATTACCTACAAACTCT AAATCATGGTAAATTAATCCAAAAAAAAAAAACTCG] [+] EMBL CF339204 [CCCAACCCAACGCCTTAACCCTATAAACTTCCCTCTCCTTCCCCTTCCCCTTCCCCCGAATCCATCCTACCTCGCCGCAACAATCCAGAGAGATCATCGAGAGAGGAGTCCACCGGACCCATGAGGAGCGGCGGCGACGTCAAGTCCTTCCGGCAGCGTCAAGCCCACCGGCGGCGTGCCGGCGTCTCCAAGAAGGCGCCCGCGTCGCAGGCGACGACAGATCGCGCCGTCGAGGAGGCGGAGGATGAGGGGCGAGAGAGGATGGCTCGGGAGTTCGACATGGACATGCGGTAAGGAGCTAAGGGCCCTGCCTCGGCCTCACCCGCGCCGCCGCGCTCGGCCTCGCCCCACCGCCCGCCGTCATCGCCTTCTGCTCCGACGACCAGCCATGCCTCTGGGAGGGCCGCGTCTAGCTCTAGCAACACCATCCACCACCACCCGATCGGCCGATCCGCTTCCAGAAAATTATAGTGTTTATAAGTAGGAACAGCTTCTCCTCTGCTTCCATCTGCCACGCCTCGTGGTGCTTGATGATCGTGTGTTCTTATCTGAAATTTATGATGTTATTCTTCTCCCAGTTGGTATGATCTATGGCATTTTGATTTGATTA CTACAAACTCTAAAATCATGGT ] [+] EMBL CF338293 [CCCAACCCAACGCCTTAACCCTATAAACTTCCCTCTCCTTCCCCTTCCCCTTCCCCCGAATCCATCCTACCTCGCCGCAACAATCCAGAGAGATCATCGAGAGAGGAGTCCACCGGACCCATGAGGAGCGGCGGCGACGTCAAGTCCTTCCGGCAGCGTCAAGCCCACCGGCGGCGTGCCGGCGTCTCCAAGAAGGCGCCCGCGTCGCAGGCGACGACAGATCGCGCCGTCGAGGAGGCGGAGGATGAGGGGCGAGAGAGGATGGCTCGGGAGTTCGACATGGACATGCGGTAAGGAGCTAAGGGCCCTGCCTCGGCCTCACCCGCGCCGCCGCGCTCGGCCTCGCCCCACCGCCCGCCGTCATCGCCTTCTGCTCCGACGACCAGCCATGCCTCTGGGAGGGCCGCGTCTAGCTCTAGCAACACCATCCACCACCACCCGATCGGCCGATCCGCTTCCAGAAAATTATAGTGTTTATAAGTAGGAACAGCTTCTCCTCTGCTTCCATCTGCCACGCCTCGTGGTGCTTGATGATCGTGTGTTCTTATCTGAAATTTATGATGTTATTCTTCTCCCAGTTGGTATGATCTATGGCATTTTGATTTGATTACt ] [+] EMBL CF338604 [CCCAACCCAACGCCTTAACCCTATAAACTTCCCTCTCCTTCCCCTTCCCCTTCCCCCGAATCCATCCTACCTCGCCGCAACAATCCAGAGAGATCATCGAGAGAGGAGTCCACCGGACCCATGAGGAGCGGCGGCGACGTCAAGTCCTTCCGGCAGCGTCAAGCCCACCGGCGGCGTGCCGGCGTCTCCAAGAAGGCGCCCGCGTCGCAGGCGACGACAGATCGCGCCGTCGAGGAGGCGGAGGATGAGGGGCGAGAGAGGATGGCTCGGGAGTTCGACATGGACATGCGGTAAGGAGCTAAGGGCCCTGCCTCGGCCTCACCCGCGCCGCCGCGCTCGGCCTCGCCCCACCGCCCGCCGTCATCGCCTTCTGCTCCGACGACCAGCCATGCCTCTGGGAGGGCCGCGTCTAGCTCTAGCAACACCATCCACCACCACCCGATCGGCCGATCCGCTTCCAGAAAATTATAGTGTTTATAAGTAGGAACAGCTTCTCCTCTGCTTCCATCTGCCACGCCTCGTGGTGCTTGATGATCGTGTGTTCTTATCTGAAATTTATGATGT ] [+] EMBL CF340573 [CCCAACCCAACGCCTTAACCCTATAAACTTCCCTCTCCTTCCCCTTCCCCTTCCCCCGAATCCATCCTACCTCGCCGCAACAATCCAGAGAGATCATCGAGAGAGGAGTCCACCGGACCCATGAGGAGCGGCGGCGACGTCAAGTCCTTCCGGCAGCGTCAAGCCCACCGGCGGCGTGCCGGCGTCTCCAAGAAGGCGCCCGCGTCGCAGGCGACGACAGATCGCGCCGTCGAGGAGGCGGAGGATGAGGGGCGAGAGAGGATGGCTCGGGAGTTCGACATGGACATGCGGTAAGGAGCTAAGGGCCCTGCCTCGGCCTCACCCGCGCCGCCGCGCTCGGCCTCGCCCCACCGCCCGCCGTCATCGCCTTCTGCTCCGACGACCAGCCATGCCTCTGGGAGGGCCGCGTCTAGCTCTAGCAACACCATCCACCACCACCCGATCGGCCGATCCGCTTCCAGAAAATTATAGTGTTTATAAGTAGGAACAGCTTCTCCTCTGCTTCCATCTGCCACGCCTCGTGGTGCTTGATGATCGTGTG ] [+] EMBL CF338718 [CCCAACCCAACGCCTTAACCCTATAAACTTCCCTCTCCTTCCCCTTCCCCTTCCCCCGAATCCATCCTACCTCGCCGCAACAATCCAGAGAGATCATCGAGAGAGGAGTCCACCGGACCCATGAGGAGCGGCGGCGACGTCAAGTCCTTCCGGCAGCGTCAAGCCCACCGGCGGCGTGCCGGCGTCTCCAAGAAGGCGCCCGCGTCGCAGGCGACGACAGATCGCGCCGTCGAGGAGGCGGAGGATGAGGGGCGAGAGAGGATGGCTCGGGAGTTCGACATGGACATGCGGTAAGGAGCTAAGGGCCCTGCCTCGGCCTCACCCGCGCCGCCGCGCTCGGCCTCGCCCCACCGCCCGCCGTCATCGCCTTCTGCTCCGACGACCAGCCATGCCTCTGGGAGGGCCGCGTCTAGCTCTAGCAACACCATCCACCACCACCCGATCGGCCGATCCGCTTCCAGAAAATTATAGTGTTTATAAGTAGGAACAGCTTCTCCTCTGCTTCCATCT ] [+] EMBL CF340507 [CCCAACCCAACGCCTTAACCCTATAAACTTCCCTCTCCTTCCCCTTCCCCTTCCCCCGAATCCATCCTACCTCGCCGCAACAATCCAGAGAGATCATCGAGAGAGGAGTCCACCGGACCCATGAGGAGCGGCGGCGACGTCAAGTCCTTCCGGCAGCGTCAAGCCCACCGGCGGCGTGCCGGCGTCTCCAAGAAGGCGCCCGCGTCGCAGGCGACGACAGATCGCGCCGTCGAGGAGGCGGAGGATGAGGGGCGAGAGAGGATGGCTCGGGAGTTCGACATGGACATGCGGTAAGGAGCTAAGGGCCCTGCCTCGGCCTCACCCGCGCCGCCGCGCTCGGCCTCGCCCCACCGCCCGCCGTCATCGCCTTCTGCTCCGACGACCAGCCATGCCTCTGGGAGGGCCGCGTCTAGCTCTAGCAACACCATCCACCACCACCCGATCGGCCGATCCGCTTCCAGAAAATTATAGTGTTTATAAGTAGGAACAGCTTCTCCTCTGCTTCCATCT ] [+] EMBL CF340315 [CCCAACCCAACGCCTTAACCCTATAAACTTCCCTCTCCTTCCCCTTCCCCTTCCCCCGAATCCATCCTACCTCGCCGCAACAATCCAGAGAGATCATCGAGAGAGGAGTCCACCGGACCCATGAGGAGCGGCGGCGACGTCAAGTCCTTCCGGCAGCGTCAAGCCCACCGGCGGCGTGCCGGCGTCTCCAAGAAGGCGCCCGCGTCGCAGGCGACGACAGATCGCGCCGTCGAGGAGGCGGAGGATGAGGGGCGAGAGAGGATGGCTCGGGAGTTCGACATGGACATGCGGTAAGGAGCTAAGGGCCCTGCCTCGGCCTCACCCGCGCCGCCGCGCTCGGCCTCGCCCCACCGCCCGCCGTCATCGCCTTCTGCTCCGACGACCAGCCATGCCTCTGGGAGGGCCGCGTCTAGCTCTAGCAACACCATCCACCACCACCCGATCGGCCGATCCGCTTCCAGAAAATTATAGTGTTTATAAGTAG ] [+] EMBL CF340329 [CCCAACCCAACGCCTTAACCCTATAAACTTCCCTCTCCTTCCCCTTCCCCTTCCCCCGAATCCATCCTACCTCGCCGCAACAATCCAGAGAGATCATCGAGAGAGGAGTCCACCGGACCCATGAGGAGCGGCGGCGACGTCAAGTCCTTCCGGCAGCGTCAAGCCCACCGGCGGCGTGCCGGCGTCTCCAAGAAGGCGCCCGCGTCGCAGGCGACGACAGATCGCGCCGTCGAGGAGGCGGAGGATGAGGGGCGAGAGAGGATGGCTCGGGAGTTCGACATGGACATGCGGTAAGGAGCTAAGGGCCCTGCCTCGGCCTCACCCGCGCCGCCGCGCTCGGCCTCGCCCCACCGCCCGCCGTCATCGCCTTCTGCTCCGACGACCAGCCATGCCTCTGGGAGGGCCGCGTCTAGCTCTAGCAACACCATCCACCACCACCCGATCG ] [+] EMBL CF340250 [CCCAACCCAACGCCTTAACCCTATAAACTTCCCTCTCCTTCCCCTTCCCCTTCCCCCGAATCCATCCTACCTCGCCGCAACAATCCAGAGAGATCATCGAGAGAGGAGTCCACCGGACCCATGAGGAGCGGCGGCGACGTCAAGTCCTTCCGGCAGCGTCAAGCCCACCGGCGGCGTGCCGGCGTCTCCAAGAAGGCGCCCGCGTCGCAGGCGACGACAGATCGCGCCGTCGAGGAGGCGGAGGATGAGGGGCGAGAGAGGATGGCTCGGGAGTTCGACATGGACATGCGGTAAGGAGCTAAGGGCCCTGCCTCGGCCTCACCCGCGCCGCCGCGCTCGGCCTCGCCCCACCGCCCGCCGTCATCGCCTTCTGCTCCGACGACCAGCCATGCCTCTGGGAGGGCCGCGTCTAGCTCTAGCAACACCATCCACCAC ] [+] EMBL CF338466 [CCCAACCCAACGCCTTAACCCTATAAACTTCCCTCTCCTTCCCCTTCCCCTTCCCCCGAATCCATCCTACCTCGCCGCAACAATCCAGAGAGATCATCGAGAGAGGAGTCCACCGGACCCATGAGGAGCGGCGGCGACGTCAAGTCCTTCCGGCAGCGTCAAGCCCACCGGCGGCGTGCCGGCGTCTCCAAGAAGGCGCCCGCGTCGCAGGCGACGACAGATCGCGCCGTCGAGGAGGCGGAGGATGAGGGGCGAGAGAGGATGGCTCGGGAGTTCGACATGGACATGCGGTAAGGAGCTAAGGGCCCTGCCTCGGCCTCACCCGCGCCGCCGCGCTCGGCCTCGCCCCACCGCCCGCCGTCATCGCCTTCTGCTCCGACGACCAGCCATGCCTCTGGGAGGGCCGCGTCTAGCTCTAGCAACACCATCCACC ] [+] EMBL CF339303 [CCCAACCCAACGCCTTAACCCTATAAACTTCCCTCTCCTTCCCCTTCCCCTTCCCCCGAATCCATCCTACCTCGCCGCAACAATCCAGAGAGATCATCGAGAGAGGAGTCCACCGGACCCATGAGGAGCGGCGGCGACGTCAAGTCCTTCCGGCAGCGTCAAGCCCACCGGCGGCGTGCCGGCGTCTCCAAGAAGGCGCCCGCGTCGCAGGCGACGACAGATCGCGCCGTCGAGGAGGCGGAGGATGAGGGGCGAGAGAGGATGGCTCGGGAGTTCGACATGGACATGCGGTAAGGAGCTAAGGGCCCTGCCTCGGCCTCACCCGCGCCGCCGCGCTCGGCCTCGCCCCACCGCCCGCCGTCATCGCCTTCTGCTCCGACGACCAGCCATGCCTCTGGGAGGGCCG ] [+] EMBL CF339332 [CCCAACCCAACGCCTTAACCCTATAAACTTCCCTCTCCTTCCCCTTCCCCTTCCCCCGAATCCATCCTACCTCGCCGCAACAATCCAGAGAGATCATCGAGAGAGGAGTCCACCGGACCCATGAGGAGCGGCGGCGACGTCAAGTCCTTCCGGCAGCGTCAAGCCCACCGGCGGCGTGCCGGCGTCTCCAAGAAGGCGCCCGCGTCGCAGGCGACGACAGATCGCGCCGTCGAGGAGGCGGAGGATGAGGGGCGAGAGAGGATGGCTCGGGAGTTCGACATGGACATGCGGTAAGGAGCTAAGGGCCCTGCCT ] consensusID : consensus_13879#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 481 fasta sequence [CCCGCCACCACCACAAGCCCGCGTCGCAGCGACGCCAGATCGCCCGTCGACGACGCGAGGAGGCACGTCGAGGAGCGGAGGAGGAGGAGGGCGGAGAGGATGGCTCGGGAGTTCGACATGGACATGCGGTACGGGCCCTGCCTCGGCCTCACCCGCGCCCAGCGCTGGCGCCGTGCCGCCGCGCTCGGCCTCGCCCCGCCGCCCGTTCGGTCATCGCCCGGTCTTGCTCCGACGACCAGCCGTGCCTCTGGGAGGGCCGCGTCTAGCTCTAGCACCACACCCGATCGACCGATCCGCTTCCAGAAAGTTCTAGTAGCTTGTATGTGTTTTAAGTAGGAACAGCTTCTCCTCTGCTTCCATCTGCCACGCCTCGTGGTGCTTGCATCGACAGTTCATTTCAAACCGCTGCCTGATGAGTCAGTGATCGGTGCCATCTTGTGTTCTTATTATCTGAAATTTATGATGTTGTTCTTCTTAAAAA] [+] EMBL BI805219 [CCCGCCACCACCACAAGCCCGCGTCGCAGCGACGCCAGATCGCCCGTCGACGACGCGAGGAGGCACGTCGAGGAGCGGAGGAGGAGGAGGGCGGAGAGGATGGCTCGGGAGTTCGACATGGACATGCGGTACGGGCCCTGCCTCGGCCTCACCCGCGCCCAGCGCTGGCGCCGTGCCGCCGCGCTCGGCCTCGCCCCGCCGCCCGTTCGGTCATCGCCCGGTCTTGCTCCGACGACCAGCCGTGCCTCTGGGAGGGCCGCGTCTAGCTCTAGCACCACACCCGATCGACCGATCCGCTTCCAGAAAGTTCTAGTAGCTTGTATGTGTTTTAAGTAGGAACAGCTTCTCCTCTGCTTCCATCTGCCACGCCTCGTGGTGCTTGCATCGACAGTTCATTTCAAACCGCTGCCTGATGAGTCAGTGATCGGTGCCATCTTGTGTTCTTATTATCTGAAATTTATGATGTTGTTCTTCTTAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13879#0 CCCAACCCAACGCCTTAACCCTATAAACTTCCCTCTCCTTCCCCTTCCCCTTCCCCCGAA 60 consensus_13879#1 ------------------------------------------------------------ consensus_13879#0 TCCATCCTACCTCGCCGCAACAATCCAGAGAGATCATCGAGAGAGGAGTCCACCGGACCC 120 consensus_13879#1 ------------------------------------------------------------ consensus_13879#0 ATGAGGAGCGGCGGCGACGTCAAGTCCTTCCGGCAGCGTCAAGCCCACCGGCGGCGT--G 178 consensus_13879#1 -------------------------------------------CCCGCCACCACCACAAG 17 *** ** * * * consensus_13879#0 CCGGCGTCTCCAAGAAGGCGCCCGCGTCGCAGGCGACGACAGATCGCGCCGTCGAGGAGG 238 consensus_13879#1 CCCGCGTCGCAGCGACGCCAGATCGCCCGTCGACGACGCGAGGAGGCAC-GTCGAGGAG- 75 ** ***** * ** * * ** * ***** ** ** * ********* consensus_13879#0 CGGAGGATGAGGGGCG-AGAGAGGATGGCTCGGGAGTTCGACATGGACATGCGGTAAGGA 297 consensus_13879#1 CGGAGGAGGAGGAGGGCGGAGAGGATGGCTCGGGAGTTCGACATGGACATGCGGTACGGG 135 ******* **** * * ************************************** ** consensus_13879#0 GCTAAG---GGCCCTGCCTCGGCCTCAC-------CCGCGCCGCCGCGCTCGGCCTCGCC 347 consensus_13879#1 CCCTGCCTCGGCCTCACCCGCGCCCAGCGCTGGCGCCGTGCCGCCGCGCTCGGCCTCGCC 195 * **** ** *** * *** ********************* consensus_13879#0 CCACCGCCCGCC--GTCATCGCC---TTCTGCTCCGACGACCAGCCATGCCTCTGGGAGG 402 consensus_13879#1 CCGCCGCCCGTTCGGTCATCGCCCGGTCTTGCTCCGACGACCAGCCGTGCCTCTGGGAGG 255 ** ******* ********* * ***************** ************* consensus_13879#0 GCCGCGTCTAGCTCTAGCAACACCATCCACCACCACCCGATCGGCCGATCCGCTTCCAGA 462 consensus_13879#1 GCCGCGTCTAGCTCTAGCACCAC-----------ACCCGATCGACCGATCCGCTTCCAGA 304 ******************* *** ********* **************** consensus_13879#0 AAATTATAGTGT----------TTATAAGTAGGAACAGCTTCTCCTCTGCTTCCATCTGC 512 consensus_13879#1 AAGTTCTAGTAGCTTGTATGTGTTTTAAGTAGGAACAGCTTCTCCTCTGCTTCCATCTGC 364 ** ** **** ** *********************************** consensus_13879#0 CACGCCTCGTGGTGCTTGATGATCGTGTGTTCTTATCTGAAATTTATGATGTTATTCTTC 572 consensus_13879#1 CACGCCTCGTGGTGCTTGC--ATCGACAGTTC--ATTTCAAAC---------CGCTGCCT 411 ****************** **** **** ** * *** * consensus_13879#0 TCCCAGTTGGTATGATCTATGGCATTTTGATTTGATTACCTACAAACTCTAAATCATGGT 632 consensus_13879#1 GATGAGTCAGT--GATCGGTGCCATCTTGTGTT-----CTTATTATCTGAAATTTATGAT 464 *** ** **** ** *** *** ** * ** * ** ** * *** * consensus_13879#0 AAATTAATCCAAAAAAAAAAAACTCG 658 consensus_13879#1 GTTGTTCTTCTTAAAAA--------- 481 * * * ***** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||