These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13880#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1222 fasta sequence [CCCCTCCCCTTCCCCCCTCCCCTCCGGCGAACTCCGAGCTCTTCCCGGTGAGCGCCGCCGATTCGGCCGGAGAGGCTCGCCGGAGTCGCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGCAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAGCGACCGGGGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCCATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAGGGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAGAAAGAGCATGACTGAATATGATCCTCGTCTGGTAGCACCAACCTGTTTGTATTTGGCATCAAAGGTGGAAGAGAGCACAGTGCAAGCAAGACTTCTTGTCTTTTACATAAAAAAGATGTGTGCTTCTGATGAGAAGTACCGGTTTGAAATCAAGGATATCCTTGAAATGGAAATGAAGCTCCTGGAGGCACTTGACTATTATTTAGTTGTTTACCACCCATATCGTCCTCTTTTACAGTTATTGCAGGATGCTGGCATAACAGATCTGACACAATTTGCCTGGGGAATTGTCAATGATACTTACAAGATGGATCTTATTCTCATACACCCACCATATATGATAGCATTAGCCTGCATCTACATTGCAAGCGTTCTTAAAGACAAGGACATAACTCTGTGGTTTGAAGAGCTCCGTGTTGACATGAACATTGTCAAGAATATCTCGATGGAAATTTTGGACTTCTATGACACCTAC-AAGATTGATCCTCAAAGAGGGCTCCCAGAGGACAAAATAGCCCCTGTGATGAACAAACTGCCTTCAAAGGCCTAAAGCAGACTGAGCCCTAGTTCAGTTGTTATCAGTCTGAGCGTCAAATCACCTTATGCTCGTACAACAGGAAATATGTGTCACCTTCCTTGGAGAACTTTATATTTCAAAGCC--ATATATATATATAGTATCAGAATTCAGAATTGCCCCTAACGAACGATTTAATTCAGAATTCCGAACTATATACAGCTGTTCCTGTTGCAGCA-GCTTGCGAGGCAAATCATTTACAATGAAGATCCCAACGGGTTGGGAATGGTCTGTATCTGTATGTGTTTTTGATGTGTAAAAAAAAACATGGCTTTGGTACTATTTAGTTTCTATAGCAAATGAAATCCTGAAAAATTCT] [+] EMBL AK072415 [CCCCTCCCCTTCCCCCCTCCCCTCCGGCGAACTCCGAGCTCTTCCCGGTGAGCGCCGCCGATTCGGCCGGAGAGGCTCGCCGGAGTCGCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGCAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAGCGACCGGGGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCCATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAGGGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAGAAAGAGCATGACTGAATATGATCCTCGTCTGGTAGCACCAACCTGTTTGTATTTGGCATCAAAGGTGGAAGAGAGCACAGTGCAAGCAAGACTTCTTGTCTTTTACATAAAAAAGATGTGTGCTTCTGATGAGAAGTACCGGTTTGAAATCAAGGATATCCTTGAAATGGAAATGAAGCTCCTGGAGGCACTTGACTATTATTTAGTTGTTTACCACCCATATCGTCCTCTTTTACAGTTATTGCAGGATGCTGGCATAACAGATCTGACACAATTTGCCTGGGGAATTGTCAATGATACTTACAAGATGGATCTTATTCTCATACACCCACCATATATGATAGCATTAGCCTGCATCTACATTGCAAGCGTTCTTAAAGACAAGGACATAACTCTGTGGTTTGAAGAGCTCCGTGTTGACATGAACATTGTCAAGAATATCTCGATGGAAATTTTGGACTTCTATGACACCTAC AAGATTGATCCTCAAAGAGGGCTCCCAGAGGACAAAATAGCCCCTGTGATGAACAAACTGCCTTCAAAGGCCTAAAGCAGACTGAGCCCTAGTTCAGTTGTTATCAGTCTGAGCGTCAAATCACCTTATGCTCGTACAACAGGAAATATGTGTCACCTTCCTTGGAGAACTTTATATTTCAAAGCC ATATATATATATAGTATCAGAATTCAGAATTGCCCCTAACGAACGATTTAATTCAGAATTCCGAACTATATACAGCTGTTCCTGTTGCAGCA GCTTGCGAGGCAAATCATTTACAATGAAGATCCCAACGGGTTGGGAATGGTCTGTATCTGTATGTGTTTTTGATGTGTAAAAAAAAACATGGCTTTGGTACTATTTAGTTTCTATAGCAAATGAAATCCTGAAAAATTC ] [+] EMBL OSD925 [ CCCCTCCGGCGAACTCCGAGCTCTTCCCGGTGAGCGCCGCCGATTCGGCCGGAGAGGCTCGCCGGAGTCGCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGCAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAGCGACCGGGGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCCATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAGGGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAGAAAGAGCATGACTGAATATGATCCTCGTCTGGTAGCACCAACCTGTTTGTATTTGGCATCAAAGGTGGAAGAGAGCACAGTGCAAGCAAGACTTCTTGTCTTTTACATAAAAAAGATGTGTGCTTCTGATGAGAAGTACCGGTTTGAAATCAAGGATATCCTTGAAATGGAAATGAAGCTCCTGGAGGCACTTGACTATTATTTAGTTGTTTACCACCCATATCGTCCTCTTTTACAGTTATTGCAGGATGCTGGCATAACAGATCTGACACAATTTGCCTGGGGAATTGTCAATGATACTTACAAGATGGATCTTATTCTCATACACCCACCATATATGATAGCATTAGCCTGCATCTACATTGCAAGCGTTCTTAAAGACAAGGACATAACTCTGTGGTTTGAAGAGCTCCGTGTTGACATGAACATTGTCAAGAATATCTCGATGGAAATTTTGGACTTCTATGACACCTAC AAGATTGATCCTCAAAGAGGGCTCCCAGAGGACAAAATAGCCCCTGTGATGAACAAACTGCCTTCAAAGGCCTAAAGCAGACTGAGCCCTAGTTCAGTTGTTATCAGTCTGAGCGTCAAATCACCTTATGCTCGTACAACAGGAAATATGTGTCACCTTCCTTGGAGAACTTTATATTTCAAAGCC ATATATATATATAGTATCAGAATTCAGAATTGCCCCTAACGAACGATTTAATTCAGAATTCCGAACTATATACAGCTGTTCCTGTTGCAGCA GCTTGCGAGGCAAATCATTTACAATGAAGATCCCAACGGGTTGGGAATGGTCTGTATCTGTATGTGTTTTTGATGTGTAAAAAAAAACATGGCTTTGGTACTATTTAGTTTCTATAGCAAATGAAATCCTGAAAAATTCT] [+] EMBL CB656502 [ TCCGAGCTCTTCCCGGTGAGCGCCGCCGATTCGGCCGGAGAGGCTCGCCGGAGTCGCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGCAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAGCGACCGGGGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCCATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAGGGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAGAAAGAGCATGACTGAATATGATCCTCGTCTGGTAGCACCAACCTGTTTGTATTTGGCATCAAAGGTGGAAGAGAGCACAGTGCAAGCAAGACTTCTTGTCTTTTACATAAAAAAGATGTGTGCTTCTGATGAGAAGTACCGGTTTGAAATCAAGGATATCCTTGAAATGGAAATGAAGCTCCTGGAGGCACTTGACTATTATTTAGTTGTTTACCACCCATATCGTCCTCTTTTACAGTTATTGCAGGATGCTGGCATAACAGATCTGACACAATTTGCCTGGGGAATTGTCAATGATACTTACAAGATGGATCTTATTCTCATACACCCACCATATATGATAGCATTAGCCTGCATCTACATTGCAAGCGTTCTTAAAGACAAGGACATAACTCTGTGGTTTGAAGAGCTCCGTGTTGACATGAACATTGTCAAGAATATCTCGATGGAAATTTTGGACTTCTATGACACCTAC AAGATTGATCCTC ] [+] EMBL CA765583 [ cGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCCATATCTGGCGATTGGCACAACAGGTGAAGGTTAGACAAAGGGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAGAAAGAGCATGACTGAATAGGATCCTCGTCTGGTAGCACCAACCTGTTTGTATTTGGCATCAAAGGTGGAAGAGAGCACAGTGCAAGCAAGACTTCTTGTCTTTTACATAAAAAAGATGTGTGCTTCTGATGAGAAGTACCGGTTTGAAATCAAGGATATCCTTGAAATGGAAATGAAGCTCCTGGAGGCACTTGACTATTATTTAGTTGTTTACCACCCATATCGTCCTCTTTTACAGTTATTGCAGGATGCTGGCATAACAGATCTGACACAATTTGCCTGGGGAATTGTCAATGATACTTACAAGATGGATCTTATTCTCATACACCCACCATATATGATAGCTTTAGCCTGCATCTACATTGCAAGCGTTCTTAAAGACAAGGACATAACTCTGTGGTTTGAAGAGCTCCGTGTTGACATGAACATTGTCAAGAATATCTCGATGGAAATTTTGGACTTCTATGACACCTACNAGGATTGATCCTCAAAGAGGGCTCCCAGAGGACAAAATAGCCCCTGTGATGAACAAACTGNCTTCAAAGGCCTAAAGCAGACTGAGCCCTAATTCAGTTGNTATCAGTCTGAGCGTCAAATCACCTTATGCTCGTACAACAGGAAATATGTGTCA NCNTGGAAAACNTTTTATTTCAATGNC ATATATA ] [+] EMBL OS0589A [ GTTTGTATTTGGCATCAAAGGTGGAAGAGAGCACAGTGCAAGCAAGACTTCTTGTCTTTTACATAAAAAAGATGTGTGCTTCTGATGAGAAGTACCGGTTTGAAATCAAGGATATCCTTGAAATGGAAATGAAGCTCCTGGAGGCACTTGACTATTATTTAGTTGTTTACCACCCATATCGTCCTCTTTTACAGTTATTGCAGGATGCTGGCATAACAGATCTGACACAATTTGCCTGGGGAATTGTCAATGATACTTACAAGATGGATCTTATTCTCATACACCCACCATATATGATAGCATTAGCCTGCATCTACATTGCAAGCGTTCTTAAAGACAAGGACATAACTCTGTGGTTTG AGAGCTCCGTGTTGACATGAACATTGTCAGGANTATCTCGGTGGGAA TTTGGNCTTCTATGACACCTAC Aggtt ] [-] EMBL CB656503 [ AAAGATGTGTGCTTCTGATGAGAAGTACCGGTTTGAAATCAAGGATATCCTTGAAATGGAAATGAAGCTCCTGGAGGCACTTGACTATTATTTAGTTGTTTACCACCCATATCGTCCTCTTTTACAGTTATTGCAGGATGCTGGCATAACAGATCTGACACAATTTGCCTGGGGAATTGTCAATGATACTTACAAGATGGATCTTATTCTCATACACCCACCATATATGATAGCATTAGCCTGCATCTACATTGCAAGCGTTCTTAAAGACAAGGACATAACTCTGTGGTTTGAAGAGCTCCGTGTTGACATGAACATTGTCAAGAATATCTCGATGGAAATTTTGGACTTCTATGACACCTAC AAGATTGATCCTCAAAGAGGGCTCCCAGAGGACAAAATAGCCCCTGTGATGAACAAACTGCCTTCAAAGGCCTAAAGCAGACTGAGCCCTAGTTCAGTTGTTATCAGTCTGAGCGTCAAATCACCTTATGCTCGTACAACAGGAAATATGTGTCACCTTCCTTGGAGAACTTTATATTTCAAAGCC ATATATATATATAGTATCAGAATTCAGAATTGCCCCTAACGAACGATTTAATTCAGAATTCCGAACTATATACAGCTGTTCCTGTTGCAGCA GCTTGCGAGGCAAATCATTTACAATGAAGATCCCAACGGGTTGGGAATGGTCTGTATCTGTATGTGTTTTTGATGTGTAAAAAAAAACATGGCTTTGGTACTAaaaaaaaga ] [-] EMBL CB620409 [ ATGTGTGCTTCTGATGAGAAGTACCGGTTTGAAATCAAGGATATCCTTGAAATGGAAATGAAGCTCCTGGAGGCACTTGACTATTATTTAGTTGTTTACCACCCATATCGTCCTCTTTTACAGTTATTGCAGGATGCTGGCATAACAGATCTGACACAATTTGCCTGGGGAATTGTCAATGATACTTACAAGATGGATCTTATTCTCATACACCCACCATATATGATAGCTTTAGCCTGCATCTACATTGCAAGCGTTCTTAAAGACAAGGACATAACTCTGTGGTTTGAAGAGCTCCGTGTTGACATGAACATTGTCAAGAATATCTCGATGGAAATTTTGGACTTCTATGACACCTAC AAGATTGATCCTCAAAGAGGGCTCCCAGAGGACAAAATAGCCCCTGTGATGAACAAACTGCCTTCAAAGGCCTAAAGCAGACTGAGCCCTAGTTCAGTTGTTATCAGTCTGAGCGTCAAATCACCTTATGCTCGTACAACAGGAAATATGTGT CC CCTTGGAGAACTTTATATTTCAATGCCATATATATATATATAGTATCAGAATTCAGAATTGCCCCTAACGAACGATTTAATTCAGAATTCCGAACTATATACAGCTGTTCCTGTTGCAGCA GCTTGCGAGGCAAATCATTTACAATGAAGATCCCAACGGGTTGGGAATGGTCTGTATCTGTATGTGTTTTTGATGTGTAAAAAAAAAGATGGCTTTGGTACTAT ] [-] EMBL CA305725 [ AAATCAAGGATATCCTTGAAATGGAAATGAAGCTCCTGGAGGCACTTGACTATTATTTAGTTGTTTACCACCCATATCGTCCTCTTTTACAGTTATTGCAGGATGCTGGCATAACAGATCTGACACAATTTGCCTGGGGAATTGTCAATGATACTTACAAGATGGATCTTATTCTCATACACCCACCATATATGATAGCTTTAGCCTGCATCTACATTGCAAGCGTTCTTAAAGACAAGGACATAACTCTGTGGTTTGAAGAGCTCCGTGTTGACATGAACATTGTCAAGAATATCTCGATGGAAATTTTGGACTTCTATGACACCTAC AAGATTGATCCTCAAAGAGGGCTCCCAGAGGACAAAATAGCCCCTGTGATGAACAAACTGCCTTCAAAGGCCTAAAGCAGACTGAGCCCTAGTTCAGTTGTTATCAGTCTGAGTGTCAAATCACCT ] [+] EMBL BI809262 [ GAGAACTTTATATTTCAATGCCATATATATATATATAGTATCAGAATTCAGAATTGCCCCTAACGAACGATTTAATTCAGAATTCCGAACTATATACAGCTGTTCCTGTTGCAGCACGCTTGCGAGGCCAATCATTTACCATGAAGATCCCCACGGGTTGGGAATGGTCTGTATCTGTATGTGTTTTTGATGTGTAAAAAAAAACCTGGCTTTGGTACTAaaaaaaaaa ] consensusID : consensus_13880#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 783 fasta sequence [CCTTCCCCCCCTCAAGCGGCGAACTCCGAGCTCTTCCCGGTGAGCGCCGCCGATTCGGCCGGAGAGGCTCGCCGGAGTCGCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGGTAAGCGTCCAACCTCCCCCACGTTTCCCCCCCTCTCGATTCGGTTTCTTGGGCTGCGAATCCGTGAGCTGAGCTGCTGCTGATTTGGGGGGTGTTCGTTCGTGTGTGATCCCGCGGCGAGCGAGGGCAGCAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAGCGACCGGGGCATCACGCCGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCCATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAGGGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAGAAAGAGCATGACTGAATATGATCCTCGTCTGGTAGCACCAACCTGTTTGTATTTGGCATCAAAGGTGGAAGAGAGCACAGTGCAAGCAAGACTTCTTGTCTTTTACATAAAAAAGATGTGTGCTTCTGATGAGAAGTACCGGTTTGAAATCAAGGATATCCTTGAAATGGAAATGAAGCTCCTGGAGGCACTTGACTATTATTTAGTTGTTTACCACCCATATCGTCCTCTTTTACAGTTATTGCAGGATGCTGGCATAACAGATCTGACACAATTTGCCTGGGGAATTGTCAATGATACTTACAAGATGGATCTTATTCTCATACACCCAC] [+] EMBL CB620408 [CCTTCCCCCCCTCAAGCGGCGAACTCCGAGCTCTTCCCGGTGAGCGCCGCCGATTCGGCCGGAGAGGCTCGCCGGAGTCGCCTCCGCCCTGCCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGGTAAGCGTCCAACCTCCCCCACGTTTCCCCCCCTCTCGATTCGGTTTCTTGGGCTGCGAATCCGTGAGCTGAGCTGCTGCTGATTTGGGGGGTGTTCGTTCGTGTGTGATCCCGCGGCGAGCGAGGGCAGCAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAGCGACCGGGGCATCACGCCGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCCATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAGGGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAGAAAGAGCATGACTGAATATGATCCTCGTCTGGTAGCACCAACCTGTTTGTATTTGGCATCAAAGGTGGAAGAGAGCACAGTGCAAGCAAGACTTCTTGTCTTTTACATAAAAAAGATGTGTGCTTCTGATGAGAAGTACCGGTTTGAAATCAAGGATATCCTTGAAATGGAAATGAAGCTCCTGGAGGCACTTGACTATTATTTAGTTGTTTACCACCCATATCGTCCTCTTTTACAGTTATTGCAGGATGCTGGCATAACAGATCTGACACAATTTGCCTGGGGAATTGTCAATGATACTTACAAGATGGATCTTATTCTCATACACCCAC] consensusID : consensus_13880#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 674 fasta sequence [TGCCCCCATTTGCCTGGGGAATGGTCCATGATCCTTACCAGATGGGTTTTTTTTTCCTACCCCCCCCCTATTTTATAGCTTTAGCCTGGATTTCCCTTGCAAGCGTTTTTAAAGACAAGGGCATAACTTTGTGGTTTGAAAAGCTCCGTGTTTACATGAACCTTGTCAAGAATATCTCGATGGAAATTTTGGGCTTTTTTGACCCCTCCAAGATTGATCCTCAAAGAGGGCTCCCCGAGGGCAAAATAGCCCCTGTGATGAACAAACTGCCTTCAAAGGCCTAAAGCCGGCTGAGCCCTAGTTCCGTTGTTTTCCGTTTGAGGGTCAAATCCCCTTTTGGTTGTACCCCCGGAAATTTGGGTCCCCCTGGGGAACTTTTTTTTTCCATGCCCTTTTTTTTTTTTTTGTTTCCGAATTCCGAATTGCCCCTAACGAACGGTTTTATTTAGAATTCCGAACTTTTTTCAGCTGTTCCTGTTTCACCAGCTTTCGGGGCCAATCTTTTTCCATGAAGATTCCCCCGGGTTGGGAATGGTCGGTTTCTGTATGGGTTTTTGATGGGTAAAAAAAAACCTGGCTTTGGGGCTTTTTTGTTTTTTTAGCCAATGAAATCCTGAAAAATTTTTGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL CA759976 [TGCCCCCATTTGCCTGGGGAATGGTCCATGATCCTTACCAGATGGGTTTTTTTTTCCTACCCCCCCCCTATTTTATAGCTTTAGCCTGGATTTCCCTTGCAAGCGTTTTTAAAGACAAGGGCATAACTTTGTGGTTTGAAAAGCTCCGTGTTTACATGAACCTTGTCAAGAATATCTCGATGGAAATTTTGGGCTTTTTTGACCCCTCCAAGATTGATCCTCAAAGAGGGCTCCCCGAGGGCAAAATAGCCCCTGTGATGAACAAACTGCCTTCAAAGGCCTAAAGCCGGCTGAGCCCTAGTTCCGTTGTTTTCCGTTTGAGGGTCAAATCCCCTTTTGGTTGTACCCCCGGAAATTTGGGTCCCCCTGGGGAACTTTTTTTTTCCATGCCCTTTTTTTTTTTTTTGTTTCCGAATTCCGAATTGCCCCTAACGAACGGTTTTATTTAGAATTCCGAACTTTTTTCAGCTGTTCCTGTTTCACCAGCTTTCGGGGCCAATCTTTTTCCATGAAGATTCCCCCGGGTTGGGAATGGTCGGTTTCTGTATGGGTTTTTGATGGGTAAAAAAAAACCTGGCTTTGGGGCTTTTTTGTTTTTTTAGCCAATGAAATCCTGAAAAATTTTTGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_13880#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 518 fasta sequence [TTCCTTAAAGACAAGGACATAACTCTGTGGCTCTTGTAAGACGCTCCGTCGCTTCGACATGAACATTGGTCAAGAATATCGTCGATGGACAATTTCTGGACTTCTATGACACCTACCATAGATTTGATCCTCAAAGAGGGCTCCCAGAGGACTAAATAGCCCCTGTGATGAACAACTGCCTTCAAAGGCCTAAAGCAGATCTGAGCCCTAGTTCACGTTCGTTATCAGTCTGAGCGCTCAAATCACCTTATGCTCGTACAACACGGAAATACTGTGTCACCTTCGGAGAACTTTATATGTTCAATGCCCACTATATATATATATAGTATCAGCAACTTCACCATTGCCCCTAACGAACGATTTAATTCAGAATTCCGAACTATATACCAGCTGTTCCTGTTGCAGCAGCTTGTCGAGGCCAATCACTTTACAATGAAGATCCCAACGGGTTGGGAATGGTCTGTATCTGTATGTGTTTTTGATCCCCTCCAAAAAAACCTGGCTTTGGTACTAAAAAA] [+] EMBL BI797993 [TTCCTTAAAGACAAGGACATAACTCTGTGGCTCTTGTAAGACGCTCCGTCGCTTCGACATGAACATTGGTCAAGAATATCGTCGATGGACAATTTCTGGACTTCTATGACACCTACCATAGATTTGATCCTCAAAGAGGGCTCCCAGAGGACTAAATAGCCCCTGTGATGAACAACTGCCTTCAAAGGCCTAAAGCAGATCTGAGCCCTAGTTCACGTTCGTTATCAGTCTGAGCGCTCAAATCACCTTATGCTCGTACAACACGGAAATACTGTGTCACCTTCGGAGAACTTTATATGTTCAATGCCCACTATATATATATATAGTATCAGCAACTTCACCATTGCCCCTAACGAACGATTTAATTCAGAATTCCGAACTATATACCAGCTGTTCCTGTTGCAGCAGCTTGTCGAGGCCAATCACTTTACAATGAAGATCCCAACGGGTTGGGAATGGTCTGTATCTGTATGTGTTTTTGATCCCCTCCAAAAAAACCTGGCTTTGGTACTAAAAAA] consensusID : consensus_13880#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 322 fasta sequence [GTTTNTATTTNGNATCAAAGGTGGAAGAAAGCACAGTGCAAGCAAGAATNCTTATATTTTACATAAAAAANATGTGTACTTCTAATGAGAAGTACCGGTTTGAANTCAANNATATCCTTGAAATGGANATAAAGCTCCTGGAGGCACTTGACTATTATTTAGTTGTNTACCACCCATATCGTCCTCTTTTACAGTTATTNCAGGATGCTGGCATAACANNTCTGNCACAATTAGCCTGGGGAATTGTCANTGGTACTTGCANGNTGGATCTTATTCTCATNCACCCTCCNTNTGTGNTAGCATTAGCCTGCATCTNCATTGC] [+] EMBL OSC04631 [GTTTNTATTTNGNATCAAAGGTGGAAGAAAGCACAGTGCAAGCAAGAATNCTTATATTTTACATAAAAAANATGTGTACTTCTAATGAGAAGTACCGGTTTGAANTCAANNATATCCTTGAAATGGANATAAAGCTCCTGGAGGCACTTGACTATTATTTAGTTGTNTACCACCCATATCGTCCTCTTTTACAGTTATTNCAGGATGCTGGCATAACANNTCTGNCACAATTAGCCTGGGGAATTGTCANTGGTACTTGCANGNTGGATCTTATTCTCATNCACCCTCCNTNTGTGNTAGCATTAGCCTGCATCTNCATTGC] consensusID : consensus_13880#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 195 fasta sequence [AATTCAGAATTGCCCCCTAACGACCGNTTTNATTCAGNNTTCCGAACTNTATNCGGCTGCTCCTGTTGCAGCCGCTTGCGAGGCAAANCATTTACANTGNAGATCCCANACGGGTTGGGAATGGTCTGTATCTGTATGTGTTTTTGNTGTGTAAAAAAAAACCTGGCTTTGGTACTATTTAGTTTCTATAGCAAA] [+] EMBL D42896 [AATTCAGAATTGCCCCCTAACGACCGNTTTNATTCAGNNTTCCGAACTNTATNCGGCTGCTCCTGTTGCAGCCGCTTGCGAGGCAAANCATTTACANTGNAGATCCCANACGGGTTGGGAATGGTCTGTATCTGTATGTGTTTTTGNTGTGTAAAAAAAAACCTGGCTTTGGTACTATTTAGTTTCTATAGCAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13880#2 ------------------------------------------------------------ consensus_13880#3 ------------------------------------------------------------ consensus_13880#5 ------------------------------------------------------------ consensus_13880#0 CCCCTCCCCTTCCCCCCTCCCCTCCGGCGAACTCCGAGCTCTTCCCGGTGAGCGCCGCCG 60 consensus_13880#1 ------------------------------------------------------------ consensus_13880#4 ------------------------------------------------------------ consensus_13880#2 ------------------------------------------------------------ consensus_13880#3 ------------------------------------------------------------ consensus_13880#5 ------------------------------------------------------------ consensus_13880#0 ATTCGGCCGGAGAGGCTCGCCGGAGTCGCCTCCGCCCTGCCCACGATGGCCGCCAACTTC 120 consensus_13880#1 ------------------------------------------------------------ consensus_13880#4 ------------------------------------------------------------ consensus_13880#2 ------------------------------------------------------------ consensus_13880#3 ------------------------------------------------------------ consensus_13880#5 ------------------------------------------------------------ consensus_13880#0 TGGACGTCGTCGCACTGCAAGCAGCTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAG 180 consensus_13880#1 ------------------------------------------------------------ consensus_13880#4 ------------------------------------------------------------ consensus_13880#2 ------------------------------------------------------------ consensus_13880#3 ------------------------------------------------------------ consensus_13880#5 ------------------------------------------------------------ consensus_13880#0 GCGGACAGCGACCGGGGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCC 240 consensus_13880#1 ------------------------------------------------------------ consensus_13880#4 ------------------------------------------------------------ consensus_13880#2 ------------------------------------------------------------ consensus_13880#3 ------------------------------------------------------------ consensus_13880#5 ------------------------------------------------------------ consensus_13880#0 TTCCATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAGGGTGATAGCTACTGCT 300 consensus_13880#1 ------------------------------------------------------------ consensus_13880#4 ------------------------------------------------------------ consensus_13880#2 ------------------------------------------------------------ consensus_13880#3 ------------------------------------------------------------ consensus_13880#5 ------------------------------------------------------------ consensus_13880#0 GTTACTTATTTCAGGCGTGTATACACAAGAAAGAGCATGACTGAATATGATCCTCGTCTG 360 consensus_13880#1 ------------------------------------------------------------ consensus_13880#4 ------------------------------------------------------------ consensus_13880#2 ------------------------------------------------------------ consensus_13880#3 ------------------------------------------------------------ consensus_13880#5 ------------------------------------------------------------ consensus_13880#0 GTAGCACCAACCTGTTTGTATTTGGCATCAAAGGTGGAAGAGAGCACAGTGCAAGCAAGA 420 consensus_13880#1 ------------------------------------------------------------ consensus_13880#4 ------------------------------------------------------------ consensus_13880#2 ------------------------------------------------------------ consensus_13880#3 ------------------------------------------------------------ consensus_13880#5 ------------------------------------------------------------ consensus_13880#0 CTTCTTGTCTTTTACATAAAAAAGATGTGTGCTTCTGATGAGAAGTACCGGTTTGAAATC 480 consensus_13880#1 ----------------------------CCTTCCCCCCCTCAAGCGGCGAACTCCGAGCT 32 consensus_13880#4 ------------------------------------------------------------ consensus_13880#2 ------------------------------------------------------------ consensus_13880#3 ------------------------------------------------------------ consensus_13880#5 ------------------------------------------------------------ consensus_13880#0 AAGGATATCCTTGAAATGGAAATGAAGCTCCTGGAGGCACTTGACTATTATTTAGTTGTT 540 consensus_13880#1 CTTCCCGGTGAGCGCCGCCGATTCGGCCGGAGAGGCTCGCCGGAGTCGCCTCCGCCCTGC 92 consensus_13880#4 ------------------------------------------------------------ consensus_13880#2 -------------------------------------------------------TGCCC 5 consensus_13880#3 ------------------------------------------------------------ consensus_13880#5 ------------------------------------------------------------ consensus_13880#0 TACCACCCATATCGTCCTCTTTTACAGTTATTGCAGGATGCTGGCATAACAGATCTGACA 600 consensus_13880#1 CCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGGTAAGCGTCCAACCTCCCCCACG 152 consensus_13880#4 ------------------------------------------------------------ consensus_13880#2 CCATTTGCCTGGGGAATGGTCCATGATCCTTACCAGATGGGTTTTTTTTTCCTACCCCCC 65 consensus_13880#3 ------------------------------------------------------------ consensus_13880#5 ------------------------------------------------------------ consensus_13880#0 CAATTTGCCTGGGGAATTGTCAATGATACTTACAAGATGGATCTTATTCTCATACACCCA 660 consensus_13880#1 TTTCCCCCCCTCTCGATTCGGTTTCTTGGGCTGCGAATCCGTGAGCTGAGCTGCTGCTGA 212 consensus_13880#4 ------------------------------------------------------------ consensus_13880#2 CCCTATTTTATAGCTTTAGCCTGGATTTCCCTTGCAAGCGTTTTTAAAGACAAGGGCATA 125 consensus_13880#3 ---------------------------------------TTCCTTAAAGACAAGGACATA 21 consensus_13880#5 ------------------------------------------------------------ consensus_13880#0 CCATATATGATAGCATTAGCCTGCATCTACATTGCAAGCGTTCTTAAAGACAAGGACATA 720 consensus_13880#1 TTTGGGGGGTGTTCGTTCGTGTGTGATCCCGCGGCGAGCGAGGGCAGCAAGCAGCTGCTG 272 consensus_13880#4 ------------------------------------------------------------ consensus_13880#2 ACTTTGTGGTT----TGAAAAGCTCCGT-GTTT--ACATGAACCTTG-TCAAGAATATC- 176 consensus_13880#3 ACTCTGTGGCTCTTGTAAGACGCTCCGTCGCTTCGACATGAACATTGGTCAAGAATATCG 81 consensus_13880#5 ------------------------------------------------------------ consensus_13880#0 ACTCTGTGGTT----TGAAGAGCTCCGT---GTTGACATGAACATTG-TCAAGAATATC- 771 consensus_13880#1 GACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAGCGACCGGGGCATCACGCCGGAG 332 consensus_13880#4 ------------------------------------------------------------ consensus_13880#2 TCGATGGAAA--TTTTGGGCTTTTTTGACCCCTCCAAGA---TTGATCCTCAAAGAGGGC 231 consensus_13880#3 TCGATGGACAATTTCTGGACTTCTATGACACCTACCATAGATTTGATCCTCAAAGAGGGC 141 consensus_13880#5 ------------------------------------------------------------ consensus_13880#0 TCGATGGAAA--TTTTGGACTTCTATGACACCTACAAGA---TTGATCCTCAAAGAGGGC 826 consensus_13880#1 GAGTTCCGCCTCGTCAAGATCCACATGTCCTTCCATATCTG-GCGATTGGCACAACAGGT 391 consensus_13880#4 ------------------------------------------------------------ consensus_13880#2 TCCCCGAGGGCAAAATAGCCCCTGTGATGAACAAACTGCCTTCAAAGGCCTAAAGCCGG- 290 consensus_13880#3 TCCCAGAGGACTAAATAGCCCCTGTGATGAACAA-CTGCCTTCAAAGGCCTAAAGCAGAT 200 consensus_13880#5 ------------------------------------------------------------ consensus_13880#0 TCCCAGAGGACAAAATAGCCCCTGTGATGAACAAACTGCCTTCAAAGGCCTAAAGCAGA- 885 consensus_13880#1 GAAAGTTAGACAAAGGGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG 451 consensus_13880#4 ------------------------------------------------------------ consensus_13880#2 CTGAGCCCTAGTTC-CGTT-GTTTTCCGTTTGAGGG-TCAAATCCCCTTTTGGTTGTACC 347 consensus_13880#3 CTGAGCCCTAGTTCACGTTCGTTATCAGTCTGAGCGCTCAAATCACCTTATGCTCGTACA 260 consensus_13880#5 ------------------------------------------------------------ consensus_13880#0 CTGAGCCCTAGTTC--AGTTGTTATCAGTCTGAGCG-TCAAATCACCTTATGCTCGTACA 942 consensus_13880#1 AAAGAGCATGACTGAATATGATCCTCGTCTGGTAGCACCAACCTGTTTGTATTTGGCATC 511 consensus_13880#4 --------------------------------------------GTTTNTATTTNGNATC 16 consensus_13880#2 CC-CGGAA-AT-TTGGGTCCCCCT-GGGGAACTTTTTTT-TTCCATGCCCTTTTTTTTTT 402 consensus_13880#3 ACACGGAA-ATACTGTGTCACCTTCGGAGAACTTTATATGTTCAATGCCCACTATATATA 319 consensus_13880#5 ------------------------------------------------------------ consensus_13880#0 ACAGGAAATATGTGTCACCTTCCTTGGAGAACTTTATAT-TTCAAAGCCATATATATATA 1001 consensus_13880#1 AAAGGTGGAAGAGAGCACAGTGCAAGCAAGACTTCTTGTCTTTTACATAAAAAAGATGTG 571 consensus_13880#4 AAAGGTGGAAGAAAGCACAGTGCAAGCAAGAATNCTTATATTTTACATAAAAAANATGTG 76 consensus_13880#2 TTT----TGTTTCCGAATTCCGAATTGCCCC-TAACGAACGGTTTTATTTAGAATTCCGA 457 consensus_13880#3 TATATAGTATCAGCAACTTCACCATTGCCCC-TAACGAACGATTTAATTCAGAATTCCGA 378 consensus_13880#5 ---------------AATTCAGAATTGCCCCCTAACGACCGNTTTNATTCAGNNTTCCGA 45 consensus_13880#0 TA------GTATCAGAATTCAGAATTGCCCC-TAACGAACGATTTAATTCAGAATTCCGA 1054 consensus_13880#1 TGCTTC-TGATGAGAAGTACCGGTTTGAAATCAAGGATATCCTTGAAATGGAAATGAAGC 630 consensus_13880#4 TACTTC-TAATGAGAAGTACCGGTTTGAANTCAANNATATCCTTGAAATGGANATAAAGC 135 * * * *** * ** * * * * consensus_13880#2 ACTTTTT-TCAGCTGTTCCTGTTTCACCAGCTT-TCGGGGCCAATCTTTTTCCA-TGAAG 514 consensus_13880#3 ACTATATACCAGCTGTTCCTGTTGCAGCAGCTTGTCGAGGCCAATCACTTTACAATGAAG 438 consensus_13880#5 ACTNTAT-NCGGCTGCTCCTGTTGCAGCCGCTT-GCGAGGCAAANCA-TTTACANTGNAG 102 consensus_13880#0 ACTATAT-ACAGCTGTTCCTGTTGCAGCAGCTT-GCGAGGCAAATCA-TTTACAATGAAG 1111 consensus_13880#1 TCCTGGAGGCACTTGACTATTATTTAGTTGTTT-ACCACCCATATCGTCCTCTTTTACAG 689 consensus_13880#4 TCCTGGAGGCACTTGACTATTATTTAGTTGTNT-ACCACCCATATCGTCCTCTTTTACAG 194 * * ** * * * * * * * * * * * ** consensus_13880#2 ATTCCCC-CGGGTTGGGAATGGTCGGTTTCTGTATGGGTTTTTGATGGG-TAAAAAAAAA 572 consensus_13880#3 ATCCCAA-CGGGTTGGGAATGGTCTGTATCTGTATGTGTTTTTGATCCCCTCCAAAAAAA 497 consensus_13880#5 ATCCCANACGGGTTGGGAATGGTCTGTATCTGTATGTGTTTTTGNTGTG-TAAAAAAAAA 161 consensus_13880#0 ATCCCAA-CGGGTTGGGAATGGTCTGTATCTGTATGTGTTTTTGATGTG-TAAAAAAAAA 1169 consensus_13880#1 TTATTGCAGGATGCTGGCATAACAGATCTGACACAATTTGCCTGGGGAATTGTCAATGAT 749 consensus_13880#4 TTATTNCAGGATGCTGGCATAACANNTCTGNCACAATTAGCCTGGGGAATTGTCANTGGT 254 * * ** ** * * ** * * consensus_13880#2 CCTGGCTTTGGGGCTTTTTTGTTTTTTTAGCCAATGAAATCCTGAAAAATTTTTGCCAAA 632 consensus_13880#3 CCTGGCTTTGGTACTAAAAAA--------------------------------------- 518 consensus_13880#5 CCTGGCTTTGGTACTATTTAGTTTCTATAGCAAA-------------------------- 195 consensus_13880#0 CATGGCTTTGGTACTATTTAGTTTCTATAGCAAATGAAATCCTGAAAAATTCT------- 1222 consensus_13880#1 ACTTACAAGATGGATCTTATTCTCATACACCCAC-------------------------- 783 consensus_13880#4 ACTTGCANGNTGGATCTTATTCTCATNCACCCTCCNTNTGTGNTAGCATTAGCCTGCATC 314 * * * consensus_13880#2 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 674 consensus_13880#3 ------------------------------------------ consensus_13880#5 ------------------------------------------ consensus_13880#0 ------------------------------------------ consensus_13880#1 ------------------------------------------ consensus_13880#4 TNCATTGC---------------------------------- 322 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||