cluster # 13882

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 13882 cluster # 13882 Sequences # 14 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_13882#0 length = 1497 sequences # 12

consensus_13882#1 length = 435 sequences # 1
consensus_13882#2 length = 208 sequences # 1

consensusID : consensus_13882#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 12
consensus length = 1497
fasta sequence

                              [CCCATTCTATCACCAAGAAAAGAGGGGAAAAAAAAAAGAGAGAAAAAAAAAGAGAGAGAGAAGAGAGGAAGAGATGGAGATGGCCATCGACACGCCATCGCCGTCGCCGTCGGCCTCGTCGGCGGCGGCGGGGAGGCAGACGCGCGCGGCGGAGTCGGTGCGGCTGGAGCACCAGCTGCTGCGCGTCCCCCTCGAGGCCCTCAAGTCCACCGTGCGCACCAACCACCGCCTCGCCGAGAAGGAGATCGCCGCCGTCCTCTCCTCCGCCGCCGCCGCGCCGGGAGGAGGAGG-AGGAGGC-AGCGGTGACGCCGCCGCCGTCGACCACCTCACCTCCCTCGTCTCCCGCCTCCACGGCCTCAAGCGCAAGATGGAGGAGGGAGCGCGGGCGGAGGAGCTGCAGGTGCAGAGGTGCCGGGCGCGGCTCAACCGTCTCGCATCGGCGAGCTCTGGCGATGATGCTGAGTGGGAGGAATTGCGGCTCAAGCGGATCCTGGTTGATTACATGCTGCGGATGTCATACTACGACACCGCCGCGAATCTCGCGGAGACTTCCGGCATTCAGGACCTTGTTGACGTTGATGTTTTTCTCGATGCAAAAAGAGTAATTGATTCTCTTCAGAACAAGGAAATCGCTCCTGCTTTAGCTTGGTGTGCAGAAAACAGGTCTCGGTTAAAGAAATCAAAGAGTAAGCTTGAGTTTTTTCTGAGGCTTCAAGAGTTTGTGGAACTTGTCAAGGCCAAGAACTTCATGCACGCTATAGCATATGCTCGAAAATACCTTTCTCCCTGGGGGGCTACACACATGAAAGAATTGCAGCGCGTCACAGCAACATTGGTTTTTA-GAAGCAGTACAAAC-TGTGCTCCTTACAAGGTCCTGTTTGAGCAAAAT-CAGTGGGACAGCCTTGTGGACC-AGTTTAAGCAGG-AATT-CT-GCAAATTGTATGGCATGACATTGG-AGCC--GTTGCTG-AACATCTATATGCAAGCA-GGGCTCACAGCTCTGA-AGACACCA-TTCTGCTTCGATGGTAACTGCCCCAAAGAAGACCCCTTATCCCTGCCTGGCTTCCGGAAACTAGCAGAGCCGCTTCCATTCTCCAAGCAGCACCATTCAAAGCTTGTC-TGCTACATAACCAAGGAGCTCATGGACACTGAGAACCCACCGCTCGTTTTCCCGAATGGCTATGTTTATAGCACCAAGGCTCTTGATGAGATGGCCA-AGAAGAATGGAGG-CAAGGTTACATGCCCTCGGACA-GGAGACATCTGCAACTACACCGATCTCGTCAAGGCCTACATATCATGATCACACAACGCG-TGTGGATCTCATCTGGGAAGACACTGATTTGCGCGGGTGATCTGCACCCTGAATGCTTGTACATAGACTGATCAGAACATTCTCTATTCTGTTAAGTTTAGTCTGAATTGTGATGCAAATGCAAGAACCATTGAAACTACTTCAGTACTGATTTCTGATTACACTTTGACCTTTTGTGTCA----AAAAAAAAAA]

[+] EMBL AK073554             [CCCATTCTATCACCAAGAAAAGAGGGGAAAAAAAAAAGAGAGAAAAAAAAAGAGAGAGAGAAGAGAGGAAGAGATGGAGATGGCCATCGACACGCCATCGCCGTCGCCGTCGGCCTCGTCGGCGGCGGCGGGGAGGCAGACGCGCGCGGCGGAGTCGGTGCGGCTGGAGCACCAGCTGCTGCGCGTCCCCCTCGAGGCCCTCAAGTCCACCGTGCGCACCAACCACCGCCTCGCCGAGAAGGAGATCGCCGCCGTCCTCTCCTCCGCCGCCGCCGCGCCGGGAGGAGGAGG AGGAGGC AGCGGTGACGCCGCCGCCGTCGACCACCTCACCTCCCTCGTCTCCCGCCTCCACGGCCTCAAGCGCAAGATGGAGGAGGGAGCGCGGGCGGAGGAGCTGCAGGTGCAGAGGTGCCGGGCGCGGCTCAACCGTCTCGCATCGGCGAGCTCTGGCGATGATGCTGAGTGGGAGGAATTGCGGCTCAAGCGGATCCTGGTTGATTACATGCTGCGGATGTCATACTACGACACCGCCGCGAATCTCGCGGAGACTTCCGGCATTCAGGACCTTGTTGACGTTGATGTTTTTCTCGATGCAAAAAGAGTAATTGATTCTCTTCAGAACAAGGAAATCGCTCCTGCTTTAGCTTGGTGTGCAGAAAACAGGTCTCGGTTAAAGAAATCAAAGAGTAAGCTTGAGTTTTTTCTGAGGCTTCAAGAGTTTGTGGAACTTGTCAAGGCCAAGAACTTCATGCACGCTATAGCATATGCTCGAAAATACCTTTCTCCCTGGGGGGCTACACACATGAAAGAATTGCAGCGCGTCACAGCAACATTGGTTTTTA GAAGCAGTACAAAC TGTGCTCCTTACAAGGTCCTGTTTGAGCAAAAT CAGTGGGACAGCCTTGTGGACC AGTTTAAGCAGG AATT CT GCAAATTGTATGGCATGACATTGG AGCC  GTTGCTG AACATCTATATGCAAGCA GGGCTCACAGCTCTGA AGACACCA TTCTGCTTCGATGGTAACTGCCCCAAAGAAGACCCCTTATCCCTGCCTGGCTTCCGGAAACTAGCAGAGCCGCTTCCATTCTCCAAGCAGCACCATTCAAAGCTTGTC TGCTACATAACCAAGGAGCTCATGGACACTGAGAACCCACCGCTCGTTTTCCCGAATGGCTATGTTTATAGCACCAAGGCTCTTGATGAGATGGCCA AGAAGAATGGAGG CAAGGTTACATGCCCTCGGACA GGAGACATCTGCAACTACACCGATCTCGTCAAGGCCTACATATCATGATCACACAACGCG TGTGGATCTCATCTGGGAAGACACTGATTTGCGCGGGTGATCTGCACCCTGAATGCTTGTACATAGACTGATCAGAACATTCTCTATTCTGTTAAGTTTAGTCTGAATTGTGATGCAAATGCAAGAACCATTGAAACTACTTCAGTACTGATTTCTGATTACACTTTGACCTTTTGTGTC               ]
[+] EMBL AU183877             [                                    AGAGAGAAAAAAAAAGAGAGAGAGAAGAGAGGAAGAGATGGAGATGGCCATCGACACGCCATCGCCGTCGCCGTCGGCCTCGTCGGCGGCGGCGGGGAGGCAGACGCGCGCGGCGGAGTCGGTGCGGCTGGAGCACCAGCTGCTGCGCGTCCCCCTCGAGGCCCTCAAGTCCACCGTGCGCACCAACCACCGCCTCGCCGAGAAGGAGATCGCCGCCGTCCTCTCCTCCGCCGCCGCCGCGCCGGGAGGAGGAGGAAGGAGGCAANCGNTGACGCCGCCGCCGTCGACCACCTCACCTCCCTCGTCTCCCGCCTCCACGGCCTCAAGCGCAAGATGGAGGAGGGAGCGCGGNCGGAGGAGCTGCAGGTGCAGAGGTGCCGGGCGCGGCTTAACCGTCTCGCATNGGCGAGCTCTGGCGATGATGCTGAGTGGGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL AU069480             [                                    AGAGAGAAAAAAAAAGAGAGAGAGAAGAGAGGAAGAGATGGAGATGGCCATCGACACGCCATCGCCGTCGCCGTCGGCCTCGTCGGCGGCGGCGGGGAGGCAGACGCGCGCGGCGGAGTCGGTGCGGCTGGAGCACCAGCTGCTGCNCGTCCCCCTCGAGGCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CB631440             [                                                                                          CACGCCATCGCCGTCGCCGTCGGCCTCGTCGGCGGCGGCGGGGAGGCAGACGCGCGCGGCGGAGTCGGTGCGGCTGGAGCACCAGCTGCTGCGCGTCCCCCTCGAGGCCCTCAAGTCCACCGTGCGCACCAACCACCGCCTCGCCGAGAAGGAGATCGCCGCCGTCCTCTCCTCCGCCGCCGCCGCGCCGGGAGGAGGAGG AGGAGGC AGCGGTGACGCCGCCGCCGTCGACCACCTCACCTCCCTCGTCTCCCGCCTCCACGGCCTCAAGCGCAAGATGGAGGAGGGAGCGCGGGCGGAGGAGCTGCAGGTGCAGAGGTGCCGGGCGCGGCTCAACCGTCTCGCATCGGCGAGCTCTGGCGATGATGCTGAGTGGGAGGAATTGCGGCTCAAGCGGATCCTGGTTGATTACATGCTGCGGATGTCATACTACGACACCGCCGCGAATCTCGCGGAGACTTCCGGCATTCAGGACCTTGTTGACGTTGATGTTTTTCTCGATGCAAAAAGAGTAATTGATTCTCTTCAGAACAAGGAAATCGCTCCTGCTTTAGCTTGGTGTGCAGAAAACAGGTCTCGGTTAAAGAAATCAAAGAGTAAGCTTGAGTTTTTTCTGAGGCTTCAAGAGTTTGTGGAACTTGTCAAGGCCAAGAACTTCATGCACGCTATAGCATATGCTCGAAAATACCTTTCTCCCTGGGGGGCTACACACATGAAAGAATTGCAGCGCGTCACAGCAACATTGGTTTTTA GAAGCAGTACAAAC T                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL OSS4266A             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GTTGATGTTTTTCTCGATGCAAAAAGAGTAATTGATTCTCTTCAGAACAAGGAAATCGCTCCTGCTTTAGCTTGGTGTGCAGAAAACAGGTCTCGGTTAAAGAAATCAAAGAGTAAGCTTGAGTTTTTTCTGAGGCTTCAAGAGTTTGTGGAACTTGTCAAGGCCAAGAACTTCATGCACGCTATAGCATATGCTCGAAAATACCTTTCTCCCTGGGGGGCTACACACATGAAAGAATTGCAGCGCGTCACAGCAACATTGGTTTTTAGGANNCAGTACAAACTTGTGCTCCTTACAAGGTCCTGTTTGAGCAAAAT C                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[-] EMBL CB631441             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               GTTTGTGGAACTTGTCAAGGCCAAGAACTTCATGCACGCTATAGCATATGCTCGAAAATACCTTTCTCCCTGGGGGGCTACACACATGAAAGAATTGCAGCGCGTCACAGCAACATTGGTTTTTA GAAGCAGTACAAAC TGTGCTCCTTACAAGGTCCTGTTTGAGCAAAAT CAGTGGGACAGCCTTGTGGACC AGTTTAAGCAGG AATT CT GCAAATTGTATGGCATGACATTGG AGCC  GTTGCTG AACATCTATATGCAAGCA GGGCTCACAGCTCTGA AGACACCA TTCTGCTTCGATGGTAACTGCCCCAAAGAAGACCCCTTATCCCTGCCTGGCTTCCGGAAACTAGCAGAGCCGCTTCCATTCTCCAAGCAGCACCATTCAAAGCTTGTC TGCTACATAACCAAGGAGCTCATGGACACTGAGAACCCACCGCTCGTTTTCCCGAATGGCTATGTTTATAGCACCAAGGCTCTTGATGAGATGGCCA AGAAGAATGGAGG CAAGGTTACATGCCCTCGGACA GGAGACATCTGCAACTACACCGATCTCGTCAAGGCCTACATATCATGATCACACAACGCG TGTGGATCTCATCTGGGAAGACACTGATTTGCGCGGGTGATCTGCACCCTGAATGCTTGTACATAGACTGATCAGAACATTCTCTATTCTGTTAAGTTTAGTCTGAATTGTGATGCAAATGCAAGAGCCATTGAAACTACTTCA                                                   ]
[+] EMBL OS1661A              [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ACGCTATAGCATATGCTCGAAAATACCTTTCTCCCTGGGGGGCTACACACATGAAAGAATTGCAGCGCGTCACAGCAACATTGGTTTTTA GAAGCAGTACAAAC TGTGCTCCTTACAAGGTCCTGTTTGAGCAAAAT CAGTGGGACAGCCTTGTGGACC AGTTTAAGCAGG AATT CT GCAAATTGTATGGCATGACATTGG AGCC  GTTGCTG AACATCTATATGCAAGCA GGGCTCACAGCTCTGA AGACACCA TTCTGCTTCGATGGTAACTGCCCCAAAGAAGACCCCTTATCCCTGCCTGGCTTCCGGAAACTAGCAGAGCCGGTTCCATTCTCCAAGCAGCACCATTCAAAGCTTGTCTTGCTAC                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL BI807536             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    GAGCACAATCCAGTGGGACAACCTTGTGGACCAAGTTTTAACAGGAAATTCCTCACAATTTGTATGGCATGACATTGGAAGCCCGGTTGCTGAAACATCTATATGCAAGCACGGGCTCACAGCTCTGAGAGACACCACTTCTGCTTCGATGGTAACTGCCCCAAAGAAGACCCCTTATCCCTGCCTGGCTTCCGGAAACTAGCAGAGCCGCTTCCATTCTCCAAGCAGCACCATTCAAAGCTTGTC TGCTACATAACCAAGGAGCTCATGGACACTGAGAACCCACCGCTCGTTTTCCCGAATGGCTATGTTTATAGCACCAAGGCTCTTGATGAGATGGCCA AGAAGAATGGAGG CAAGGTTACATGCCCTCGGACA GGAGACATCTGCAACTACACCGATCTCGTCAAGGCCTACATATCATGATCACACAACGTG TGTGGATCTCATCTGGGAAGACACTGATTTGCGCGGGTGATCTGCACCCTGAATGCTTGTACATAGACTGATCAGAACATTCTCTATTCTGTTAAGTTTAGTCTGAATTGTGATGCAAATGCAAGAACCATTGAAACTACTTCAGTACTGATTTCTGATTACACTTTGACCTTTTGTGTCATTGCAAAAAAAAAA]
[+] EMBL AU030665             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               AGTGGGACAGCCTTNTGGACC AGTTTAAGCAGG AATT CT GCAAATTGTATGGCATGACATTGG AGCC  GTTGCTG AACATCTATATGCAAGCA GGGCTCACAGCTCTGA AGACACCA TTCTGCTTCGATGGTAACTGCCCCAAAGAAGACCCCTTATCCCTGCCTGGCTTCCGGAAACTAGCAGAGCCGCTTCCATTCTCCAAGCAGCACCATTCAAAGCTTGTC TGCTACATAACCAAGGAGCTCATGGACACTGAGAACCCACCGCTCGTTTTCCCGAATGGCTATGTTTATAGCACCAAGGCTCTTGATGAGATGGCCA AGAAGAATGGAGG CAAGGTTACATGCCCTCGGACA GGAGACATCTGCAACTACACCGATCTCGTCAAGGCCTACATATCATGATCACACAACGCG TGTGGATCTCATCTGGGAAGACACTGATTTGCGCGGGTGATCTGCACCCTGAATGCTTGTACATAGACTGATCAGAACATTCTCTATTCTGTTAAGTTTAGTCTGAATTGTGATGCAAATGCAAGAACCATTGAAACTACTTCAGTACTGATTTCTGATTACACTTTGNCCTNNTGTGTCA    AAAAAAAAAA]
[+] EMBL BI797647             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        TTAACCAGG AATT CT GCAAATTGTATGGCATGACATTGG AGCC  GTTGCTG AACATCTATATGCAAGCA GGGCTCACAGCTCTGA AGACACCA TTCTGCTTCGATGGTAACTGCCCCCAAGAAGACCCCTTATCCCTGCCTGGCTTCCGGAAACTAGCAGAGCCGCTTCCATTCTCCAAGCAGCACCATTCAAAGCTTGTC TGCTACATAACCAAGGAGCTCATGGACACTGAGAACCC CCGCTCGTTTTCCCGAATGGCTATGTTTATAGCACCAAGGCTCTTGATGAGATGGCCACAGAAGAATGGAGGCCAAGGTTACATGCCCTCGGACACGGAGACATCTGCAACTACACCGATCTCGTCAAGGCCTACATATCATGATCACAC ACGCGCTGTGGATCTCATCTGGGAAGACCCTGATTTGCGCGGGTGATCTGCACCCTGAATGCTTGTACATAGACTGATCAGAACATTCTCTATTCTGTTAAGTTTAGTCTGAATTGTGATGC AATGCAAGAACC TTGAAACTACTTCAGTACTGATTTCTGATTAaaaaaaaaa                         ]
[+] EMBL AU181965             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        AGAAGACCCCTTATNCCTGCCTGGCTTCCGGAAACTAGCAGAGCCGCTTCCATTCTCCAAGCAGCACCATTCAAAGCTTGTC TGCTACATAACCAAGGAGCTCATGGACACTGAGAACCCNCCGCTCGTTTTCCCGAATGGCTATGTTTATAGCACCAAGGCTCTTGATGAGATGGCCA AGAAGAATGGAGG CAAGGTTACATGCCCTCGGACA GGAGACATCTGCAACTACACCGATCTCGTCAAGGCCTACATATCATGATCACACAACGCG TGTGGATCTCATCTGGGAAGACACTGATTTGCGCGGGTGATCTGCACCCTGAATGCTTGTACATAGACTGATCAGAACATTCTCTATTCTGTTAAGTTTAGTCTGAATTGTGATGCAAATGCAAGAACCATTGAAACTACTTCAGTACTGATTTCTGATTAaaaa                              ]
[+] EMBL CF195913             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            AACCCACCGCTCGTTTTCCCGAATGGCTATGTTTATAGCACCAAGGCTCTTGATGAGATGGCCA AGAAGAATGGAGG CAAGGTTACATGCCCTCGGACA GGAGACATCTGCAACTACACCGATCTCGTCAAGGCCTACATATCATGATCACACAACGCG TGTGGATCTCATCTGGGAAGACACTGATTTGCGCGGGTGATCTGCACCCTGAATGCTTGTACATAGACTGATCAGAACATTCTCTATTCTGTTAAGTTTAGTCTGAATTGTGATGCAAATGCAAGAACCATTGAAACTACTTCAGTACTG                                             ]




>consensus_13882#0
CCCATTCTATCACCAAGAAAAGAGGGGAAAAAAAAAAGAGAGAAAAAAAAAGAGAGAGAG
AAGAGAGGAAGAGATGGAGATGGCCATCGACACGCCATCGCCGTCGCCGTCGGCCTCGTC
GGCGGCGGCGGGGAGGCAGACGCGCGCGGCGGAGTCGGTGCGGCTGGAGCACCAGCTGCT
GCGCGTCCCCCTCGAGGCCCTCAAGTCCACCGTGCGCACCAACCACCGCCTCGCCGAGAA
GGAGATCGCCGCCGTCCTCTCCTCCGCCGCCGCCGCGCCGGGAGGAGGAGGAGGAGGCAG
CGGTGACGCCGCCGCCGTCGACCACCTCACCTCCCTCGTCTCCCGCCTCCACGGCCTCAA
GCGCAAGATGGAGGAGGGAGCGCGGGCGGAGGAGCTGCAGGTGCAGAGGTGCCGGGCGCG
GCTCAACCGTCTCGCATCGGCGAGCTCTGGCGATGATGCTGAGTGGGAGGAATTGCGGCT
CAAGCGGATCCTGGTTGATTACATGCTGCGGATGTCATACTACGACACCGCCGCGAATCT
CGCGGAGACTTCCGGCATTCAGGACCTTGTTGACGTTGATGTTTTTCTCGATGCAAAAAG
AGTAATTGATTCTCTTCAGAACAAGGAAATCGCTCCTGCTTTAGCTTGGTGTGCAGAAAA
CAGGTCTCGGTTAAAGAAATCAAAGAGTAAGCTTGAGTTTTTTCTGAGGCTTCAAGAGTT
TGTGGAACTTGTCAAGGCCAAGAACTTCATGCACGCTATAGCATATGCTCGAAAATACCT
TTCTCCCTGGGGGGCTACACACATGAAAGAATTGCAGCGCGTCACAGCAACATTGGTTTT
TAGAAGCAGTACAAACTGTGCTCCTTACAAGGTCCTGTTTGAGCAAAATCAGTGGGACAG
CCTTGTGGACCAGTTTAAGCAGGAATTCTGCAAATTGTATGGCATGACATTGGAGCCGTT
GCTGAACATCTATATGCAAGCAGGGCTCACAGCTCTGAAGACACCATTCTGCTTCGATGG
TAACTGCCCCAAAGAAGACCCCTTATCCCTGCCTGGCTTCCGGAAACTAGCAGAGCCGCT
TCCATTCTCCAAGCAGCACCATTCAAAGCTTGTCTGCTACATAACCAAGGAGCTCATGGA
CACTGAGAACCCACCGCTCGTTTTCCCGAATGGCTATGTTTATAGCACCAAGGCTCTTGA
TGAGATGGCCAAGAAGAATGGAGGCAAGGTTACATGCCCTCGGACAGGAGACATCTGCAA
CTACACCGATCTCGTCAAGGCCTACATATCATGATCACACAACGCGTGTGGATCTCATCT
GGGAAGACACTGATTTGCGCGGGTGATCTGCACCCTGAATGCTTGTACATAGACTGATCA
GAACATTCTCTATTCTGTTAAGTTTAGTCTGAATTGTGATGCAAATGCAAGAACCATTGA
AACTACTTCAGTACTGATTTCTGATTACACTTTGACCTTTTGTGTCAAAAAAAAAAA

consensusID : consensus_13882#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 435
fasta sequence

                              [TCCCTGCCTGGCTTCCGGAAACTAGCAGAGCCGCTTCCATTCTCCAAGCAGCACCATTCAAAGCTTGTCTGCTACATAACCAAGGAGCTCATGGACACTGAGAACCCNCCGCTCGTTTTCCCGAATGGCTATGTTTATAGCACCAAGGCTCTTGATGAGATGGCCAAGAAGAATGGAGGCAAGGTTACATGCCCTCGGACAGGAGACATCTGCAACTACACCGATCTCGTCAAGGCCTACATATCATGATCACACAACGCGTGTGGATCTCATCTGGGAAGACACTGATTTGCGCGGGTGATNTGCACCCTGAATGCTTGTACATAGACTGATCAGAACATTCTCTATTCTGTTAAGTTTAGTCTGAATTGTGATGCAAATGCAAGAACCATTGAAACTACTTCAGTACTGATTTCTGATTAAAAAAAAAAAAAA]

[+] EMBL AU166960             [TCCCTGCCTGGCTTCCGGAAACTAGCAGAGCCGCTTCCATTCTCCAAGCAGCACCATTCAAAGCTTGTCTGCTACATAACCAAGGAGCTCATGGACACTGAGAACCCNCCGCTCGTTTTCCCGAATGGCTATGTTTATAGCACCAAGGCTCTTGATGAGATGGCCAAGAAGAATGGAGGCAAGGTTACATGCCCTCGGACAGGAGACATCTGCAACTACACCGATCTCGTCAAGGCCTACATATCATGATCACACAACGCGTGTGGATCTCATCTGGGAAGACACTGATTTGCGCGGGTGATNTGCACCCTGAATGCTTGTACATAGACTGATCAGAACATTCTCTATTCTGTTAAGTTTAGTCTGAATTGTGATGCAAATGCAAGAACCATTGAAACTACTTCAGTACTGATTTCTGATTAAAAAAAAAAAAAA]




>consensus_13882#1
TCCCTGCCTGGCTTCCGGAAACTAGCAGAGCCGCTTCCATTCTCCAAGCAGCACCATTCA
AAGCTTGTCTGCTACATAACCAAGGAGCTCATGGACACTGAGAACCCNCCGCTCGTTTTC
CCGAATGGCTATGTTTATAGCACCAAGGCTCTTGATGAGATGGCCAAGAAGAATGGAGGC
AAGGTTACATGCCCTCGGACAGGAGACATCTGCAACTACACCGATCTCGTCAAGGCCTAC
ATATCATGATCACACAACGCGTGTGGATCTCATCTGGGAAGACACTGATTTGCGCGGGTG
ATNTGCACCCTGAATGCTTGTACATAGACTGATCAGAACATTCTCTATTCTGTTAAGTTT
AGTCTGAATTGTGATGCAAATGCAAGAACCATTGAAACTACTTCAGTACTGATTTCTGAT
TAAAAAAAAAAAAAA

consensusID : consensus_13882#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 208
fasta sequence

                              [GGANANAAAAAAAGAGAGAAAAAAAAAGAGAGAGAGAAGAGAGGAAGAGATGGAGGATGNCCATCGACACGCCATCNNCGTCNCCGTCGGCCTCGTCGGCGGCGGCGGGGAGGCAGACGCCCNCGGCGGAGTCGGTNCGGCTGGAGCACCANCTGCTGCNCNTCCCCCTCNAGGCCCTCAANTCCACCGTGCGCACCAACCACCGGGT]

[+] EMBL AU069317             [GGANANAAAAAAAGAGAGAAAAAAAAAGAGAGAGAGAAGAGAGGAAGAGATGGAGGATGNCCATCGACACGCCATCNNCGTCNCCGTCGGCCTCGTCGGCGGCGGCGGGGAGGCAGACGCCCNCGGCGGAGTCGGTNCGGCTGGAGCACCANCTGCTGCNCNTCCCCCTCNAGGCCCTCAANTCCACCGTGCGCACCAACCACCGGGT]




>consensus_13882#2
GGANANAAAAAAAGAGAGAAAAAAAAAGAGAGAGAGAAGAGAGGAAGAGATGGAGGATGN
CCATCGACACGCCATCNNCGTCNCCGTCGGCCTCGTCGGCGGCGGCGGGGAGGCAGACGC
CCNCGGCGGAGTCGGTNCGGCTGGAGCACCANCTGCTGCNCNTCCCCCTCNAGGCCCTCA
ANTCCACCGTGCGCACCAACCACCGGGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13882#0      CCCATTCTATCACCAAGAAAAGAGGGGAAAAAAAAAAGAGAGAAAAAAAAAGAGAGAGAG 60
consensus_13882#1      ------------------------------------------------------------
consensus_13882#2      ------------------------------------------------------------
                                                                                   

consensus_13882#0      AAGAGAGGAAGAGATGGAGATGGCCATCGACACGCCATCGCCGTCGCCGTCGGCCTCGTC 120
consensus_13882#1      ------------------------------------------------------------
consensus_13882#2      ------------------------------------------------------------
                                                                                   

consensus_13882#0      GGCGGCGGCGGGGAGGCAGACGCGCGCGGCGGAGTCGGTGCGGCTGGAGCACCAGCTGCT 180
consensus_13882#1      ------------------------------------------------------------
consensus_13882#2      ------------------------------------------------------------
                                                                                   

consensus_13882#0      GCGCGTCCCCCTCGAGGCCCTCAAGTCCACCGTGCGCACCAACCACCGCCTCGCCGAGAA 240
consensus_13882#1      ------------------------------------------------------------
consensus_13882#2      ------------------------------------------------------------
                                                                                   

consensus_13882#0      GGAGATCGCCGCCGTCCTCTCCTCCGCCGCCGCCGCGCCGGGAGGAGGAGGAGGAGGCAG 300
consensus_13882#1      ------------------------------------------------------------
consensus_13882#2      ------------------------------------------------------------
                                                                                   

consensus_13882#0      CGGTGACGCCGCCGCCGTCGACCACCTCACCTCCCTCGTCTCCCGCCTCCACGGCCTCAA 360
consensus_13882#1      ------------------------------------------------------------
consensus_13882#2      ------------------------------------------------------------
                                                                                   

consensus_13882#0      GCGCAAGATGGAGGAGGGAGCGCGGGCGGAGGAGCTGCAGGTGCAGAGGTGCCGGGCGCG 420
consensus_13882#1      ------------------------------------------------------------
consensus_13882#2      ------------------------------------------------------------
                                                                                   

consensus_13882#0      GCTCAACCGTCTCGCATCGGCGAGCTCTGGCGATGATGCTGAGTGGGAGGAATTGCGGCT 480
consensus_13882#1      ------------------------------------------------------------
consensus_13882#2      ------------------------------------------------------------
                                                                                   

consensus_13882#0      CAAGCGGATCCTGGTTGATTACATGCTGCGGATGTCATACTACGACACCGCCGCGAATCT 540
consensus_13882#1      ------------------------------------------------------------
consensus_13882#2      ------------------------------------------------------------
                                                                                   

consensus_13882#0      CGCGGAGACTTCCGGCATTCAGGACCTTGTTGACGTTGATGTTTTTCTCGATGCAAAAAG 600
consensus_13882#1      ------------------------------------------------------------
consensus_13882#2      ------------------------------------------------------------
                                                                                   

consensus_13882#0      AGTAATTGATTCTCTTCAGAACAAGGAAATCGCTCCTGCTTTAGCTTGGTGTGCAGAAAA 660
consensus_13882#1      ------------------------------------------------------------
consensus_13882#2      ------------------------------------------------------------
                                                                                   

consensus_13882#0      CAGGTCTCGGTTAAAGAAATCAAAGAGTAAGCTTGAGTTTTTTCTGAGGCTTCAAGAGTT 720
consensus_13882#1      ------------------------------------------------------------
consensus_13882#2      ------------------------------------------------------------
                                                                                   

consensus_13882#0      TGTGGAACTTGTCAAGGCCAAGAACTTCATGCACGCTATAGCATATGCTCGAAAATACCT 780
consensus_13882#1      ------------------------------------------------------------
consensus_13882#2      ------------------------------------------------------------
                                                                                   

consensus_13882#0      TTCTCCCTGGGGGGCTACACACATGAAAGAATTGCAGCGCGTCACAGCAACATTGGTTTT 840
consensus_13882#1      ------------------------------------------------------------
consensus_13882#2      ------------------------------------------------------------
                                                                                   

consensus_13882#0      TAGAAGCAGTACAAACTGTGCTCCTTACAAGGTCCTGTTTGAGCAAAATCAGTGGGACAG 900
consensus_13882#1      ------------------------------------------------------------
consensus_13882#2      ------------------------------------------------------------
                                                                                   

consensus_13882#0      CCTTGTGGACCAGTTTAAGCAGGAATTCTGCAAATTGTATGGCATGACATTGGAGCCGTT 960
consensus_13882#1      ------------------------------------------------------------
consensus_13882#2      ------------------------------------------------------------
                                                                                   

consensus_13882#0      GCTGAACATCTATATGCAAGCAGGGCTCACAGCTCTGAAGACACCATTCTGCTTCGATGG 1020
consensus_13882#1      ------------------------------------------------------------
consensus_13882#2      ------------------------------------------------------------
                                                                                   

consensus_13882#0      TAACTGCCCCAAAGAAGACCCCTTATCCCTGCCTGGCTTCCGGAAACTAGCAGAGCCGCT 1080
consensus_13882#1      -------------------------TCCCTGCCTGGCTTCCGGAAACTAGCAGAGCCGCT 35
consensus_13882#2      ------------------------------------------------------------
                                                                                   

consensus_13882#0      TCCATTCTCCAAGCAGCACCATTCAAAGCTTGTCTGCTACATAACCAAGGAGCTCATGGA 1140
consensus_13882#1      TCCATTCTCCAAGCAGCACCATTCAAAGCTTGTCTGCTACATAACCAAGGAGCTCATGGA 95
consensus_13882#2      ------------------------------------------------------------
                                                                                   

consensus_13882#0      CACTGAGAACCCACCGCTCGTTTTCCCGAATGGCTATGTTTATAGCACCAAGGCTCTTGA 1200
consensus_13882#1      CACTGAGAACCCNCCGCTCGTTTTCCCGAATGGCTATGTTTATAGCACCAAGGCTCTTGA 155
consensus_13882#2      -------------------------------------GGANANAAAAAAAGAGAGAAAAA 23
                                                            *   * *  *  *  *      *

consensus_13882#0      TGAGATGGCCAAGAAGAATGGAGGCAAGGTTACATGCCCTCGGACAGGAGACATCTGCAA 1260
consensus_13882#1      TGAGATGGCCAAGAAGAATGGAGGCAAGGTTACATGCCCTCGGACAGGAGACATCTGCAA 215
consensus_13882#2      AAAAGAGAGAGAGAAGAGAGGAAGAGATGGAGGATGNCCATCGACACG--CCATCNNCGT 81
                         *   *    ******  *** *  * *    *** **   **** *   ****  *  

consensus_13882#0      CTACACCGATCTCGTCAAGGCCTACATATCATGATCACACAACGCGTGTGGATCTCATCT 1320
consensus_13882#1      CTACACCGATCTCGTCAAGGCCTACATATCATGATCACACAACGCGTGTGGATCTCATCT 275
consensus_13882#2      CNCCGTCGGCCTCGTCGGCGGCGGCGGG---GAGGCAGACGCCCNCGGCGGAGTCGGTNC 138
                       *  *  **  ******   * *  *          ** **  *    * ***     *  

consensus_13882#0      GGGAAGACACTGATTTGCGCGGGTGATCTGCACCCTGAATGCTTGTACATAGACTGATCA 1380
consensus_13882#1      GGGAAGACACTGATTTGCGCGGGTGATNTGCACCCTGAATGCTTGTACATAGACTGATCA 335
consensus_13882#2      GGCTGGAGCACCANCTGC-----TGCNCNTCCCCCTCNAGGCCCTCAANTCCACCGTGCG 193
                       **   **     *  ***     **     * ****  * **    *  *  ** *  * 

consensus_13882#0      GAACATTCTCTATTCTGTTAAGTTTAGTCTGAATTGTGATGCAAATGCAAGAACCATTGA 1440
consensus_13882#1      GAACATTCTCTATTCTGTTAAGTTTAGTCTGAATTGTGATGCAAATGCAAGAACCATTGA 395
consensus_13882#2      CACCAACCACCGGGT--------------------------------------------- 208
                        * **  * *                                                  

consensus_13882#0      AACTACTTCAGTACTGATTTCTGATTACACTTTGACCTTTTGTGTCAAAAAAAAAAA 1497
consensus_13882#1      AACTACTTCAGTACTGATTTCTGATTAAA-----------------AAAAAAAAAAA 435
consensus_13882#2      ---------------------------------------------------------