These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13888#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1050 fasta sequence [GCAGCAACGTACGCGTACTGTCTAGTTAGCTAGCTTCTTAGCTTCGAACCTTCGATCTCTCGATCACAGGCTAATCAAGCTTAGCTTGATGGCAACTTGGTCCAATGCGTCGTCTCTGATCGTCGCCGCCGTAATTCTGCTTGGCCTCAGCTCGGCAAGCGTCGCGCATGGCCGCCGCGGCAGGAGGAGCTTCGTCTCCAGCTACGACGAGCCGTGCATGGAGATGAGGCTGTACCTCCACGACATCATCTACGACTACAGTAACAGCACCTCCAACTCCACGTCGGCGGCGGCCACCAAGCCGACGCCGCTGAGCACCGCCGTGTCCAACCCCGGCTACTTCTTCGGCGAGATGGTGGTGTTCAACGACCCCATGACGGAGGGGAGGGCGCTGCCGCCGTCGCCGGCGATGGAGGAGGAGACGGCAGTGCGCGCGCAGGGGGTCTACCTCTACGACAAGAAGGAGGCGCCCAACGCGTGGTTCGCCTTCTCCGTGGTGTTCAACTCCACGGGGCGCCGCGGCACGCTCAACCTGATGGGCGCCGACCTCATGTCGGAGAAGACGAGGGACCTCTCCGTCGTGGGTGGCACCGGCGACTTCTTCATGTCCCGCGGCGTCGCCACGCTCAGCACCGACGAGGCCTCGGCGGACTTGTCATACTTCCGGGTGAAGGTGGACATCAAGCTCTACGAATGCTACGTCTGATCCCATGCATACGTACGCTTGCTCTTTCATGGCCGTGGATCGGATCATCGCGTGTCCTAAATATGCGCTTGTATTTGTGTGATTGTGTGTGTTGAATTTCCTTCTTGACATTCATCATCTTTGCGTGACGAGTCATATGCACGGAGAAATGTGCAAAATGTGTTTTTTTTTTCGTGTTTTGGATTTGCATCTCATGTATTGTTTGAGTGACGAGTCAGCGATCGGCTTGGCGTGGTGGTTTGTTTTGTCTTTCTTTTTCCTGGTTATAATCTTCATAGTTATAATCTTATAATTTTTTTTCTACATCAATATAAAATCTTGTATTAAAAAAAAAAAAAAAAAAA] [+] EMBL AK108983 [GCAGCAACGTACGCGTACTGTCTAGTTAGCTAGCTTCTTAGCTTCGAACCTTCGATCTCTCGATCACAGGCTAATCAAGCTTAGCTTGATGGCAACTTGGTCCAATGCGTCGTCTCTGATCGTCGCCGCCGTAATTCTGCTTGGCCTCAGCTCGGCAAGCGTCGCGCATGGCCGCCGCGGCAGGAGGAGCTTCGTCTCCAGCTACGACGAGCCGTGCATGGAGATGAGGCTGTACCTCCACGACATCATCTACGACTACAGTAACAGCACCTCCAACTCCACGTCGGCGGCGGCCACCAAGCCGACGCCGCTGAGCACCGCCGTGTCCAACCCCGGCTACTTCTTCGGCGAGATGGTGGTGTTCAACGACCCCATGACGGAGGGGAGGGCGCTGCCGCCGTCGCCGGCGATGGAGGAGGAGACGGCAGTGCGCGCGCAGGGGGTCTACCTCTACGACAAGAAGGAGGCGCCCAACGCGTGGTTCGCCTTCTCCGTGGTGTTCAACTCCACGGGGCGCCGCGGCACGCTCAACCTGATGGGCGCCGACCTCATGTCGGAGAAGACGAGGGACCTCTCCGTCGTGGGTGGCACCGGCGACTTCTTCATGTCCCGCGGCGTCGCCACGCTCAGCACCGACGAGGCCTCGGCGGACTTGTCATACTTCCGGGTGAAGGTGGACATCAAGCTCTACGAATGCTACGTCTGATCCCATGCATACGTACGCTTGCTCTTTCATGGCCGTGGATCGGATCATCGCGTGTCCTAAATATGCGCTTGTATTTGTGTGATTGTGTGTGTTGAATTTCCTTCTTGACATTCATCATCTTTGCGTGACGAGTCATATGCACGGAGAAATGTGCAAAATGTGTTTTTTTTTTCGTGTTTTGGATTTGCATCTCATGTATTGTTTGAGTGACGAGTCAGCGATCGGCTTGGCGTGGTGGTTTGTTTTGTCTTTCTTTTTCCTGGTTATAATCTTCATAGTTATAATCTTATAATTTTTTTTCTACATCAATATAAA ] [+] EMBL CF290880 [GCAGCAACGTACGCGTACTGTCTAGTTAGCTAGCTTCTTAGCTTCGAACCTTCGATCTCTCGATCACAGGCTAATCAAGCTTAGCTTGATGGCAACTTGGTCCAATGCGTCGTCTCTGATCGTCGCCGCCGTAATTCTGCTTGGCCTCAGCTCGGCAAGCGTCGCGCATGGCCGCCGCGGCAGGAGGAGCTTCGTCTCCAGCTACGACGAGCCGTGCATGGAGATGAGGCTGTACCTCCACGACATCATCTACGACTACAGTAACAGCACCTCCAACTCCACGTCGGCGGCGGCCACCAAGCCGACGCCGCTGAGCACCGCCGTGTCCAACCCCGGCTACTTCTTCGGCGAGATGGTGGTGTTCAACG ] [-] EMBL CF290879 [ CTTGTCATACTTCCGGGTGAAGGTGGACATCAAGCTTTACGAATGGTACGTTTGATCCCATGCATACGTACGCTTGCTTTTTCATGGCCGTGGATCGGATCATCGCGTGTCCTAAATATGCGCTTGTATTTGTGTGATTGTGTGTGTTGAATTTCCTTCTTGACATTCATCATCTTTGCGTGACGAGTCATATGCCCGGAGAAATGTGCAAAATGTGTTTTTTTTTTCGTGTTTTGGATTTGCATCTCATGTATTGTTTGAGTGACGAGTCAGCGATCGGCTTGGCGTGGTGGTTTGTTTTGTCTTTCTTTTTCCTGGTTATAATCTTCATAGTTATAATCTTATAATTTTTTTTCTACATCAATATAAAATCTTGTATTAAAAAAAAAAAAAAAAAAA] consensusID : consensus_13888#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 994 fasta sequence [CTGCAGCTAGCTAGCTAAGCTTGGATAACAGTGCAAGGGCGCCGGACGGCTACTTGGTCCATGGCGTCTCTGACGATCGTCGTCGCCACCATCTTCCTGCTCAGCCTCACCTCGGCGAGCGTCGCCGTCCATGGCCGGAGCAGCAGGAGGAGGTTCGTCAGGAGCTACGACGAGCCGTGCATGGAGATGAGGCTGTACCTCCACGACATCCTCTACGACTACAGCAACAGCACCTCCAACTCCACGGCGGCGGCGGCCACCAAGCCGACGGCGCTGGCCAACGCCGTGCCGTCGACCGGCGGCACCTTCTTCGGCGAGGTGGTGGTGTTCAACGACCCGGTGACGGAGGGGAGGGCGCTGCCGCCGTCGCTGGAGGAGACGGCGGTGAGGGCGCAGGGGCTCTACCTCTACAACAGCAAGGAGGCGTTCAACGCGTGGCTCGCCTTCTCCATCGTGTTCAACTCCACGGGGCGCCGCGGCACGCTCAACCTCATGGGCGCCGACATCATCGCCGAGAAGACGAGGGACATCTCCGTCGTGGGCGGCACCGGCGACTTCTTCATGTCGCGCGGCGTCGCCACCCTCCGCACCGACGCTTTCGAGGGCTTCACCTACTTCAGGCTGCAGATGGACATCAAGCTCTACGAGTGCTACGTATGATGCATCCATCCATGGTCGTATAATATATACTCCATCCGTTCTAAAATATAAGTATTTTTAGCTATGAACGCTTATATTTTAAGACGGAGGGAGTACCAAACACTATTCATTATTGTCGATGCAAATTTCAGTGAAGATGTGACATCTTTGGTCAGGGAG-ACAAATGATCAGCCAATTGACAAGGTG-ATCTGATGCTCCTAGCTTCGTCTACCTATAGATTTATTTGTTGCTGCTCCCATCATCAGATCAGACCACCAGCTGTATGAGTATATACACAGTTTGTATGCTAAATTCTTTCTAAATAAACATCCTTATGCAAATGTGTTGATAAAAA] [+] EMBL AK103858 [CTGCAGCTAGCTAGCTAAGCTTGGATAACAGTGCAAGGGCGCCGGACGGCTACTTGGTCCATGGCGTCTCTGACGATCGTCGTCGCCACCATCTTCCTGCTCAGCCTCACCTCGGCGAGCGTCGCCGTCCATGGCCGGAGCAGCAGGAGGAGGTTCGTCAGGAGCTACGACGAGCCGTGCATGGAGATGAGGCTGTACCTCCACGACATCCTCTACGACTACAGCAACAGCACCTCCAACTCCACGGCGGCGGCGGCCACCAAGCCGACGGCGCTGGCCAACGCCGTGCCGTCGACCGGCGGCACCTTCTTCGGCGAGGTGGTGGTGTTCAACGACCCGGTGACGGAGGGGAGGGCGCTGCCGCCGTCGCTGGAGGAGACGGCGGTGAGGGCGCAGGGGCTCTACCTCTACAACAGCAAGGAGGCGTTCAACGCGTGGCTCGCCTTCTCCATCGTGTTCAACTCCACGGGGCGCCGCGGCACGCTCAACCTCATGGGCGCCGACATCATCGCCGAGAAGACGAGGGACATCTCCGTCGTGGGCGGCACCGGCGACTTCTTCATGTCGCGCGGCGTCGCCACCCTCCGCACCGACGCTTTCGAGGGCTTCACCTACTTCAGGCTGCAGATGGACATCAAGCTCTACGAGTGCTACGTATGATGCATCCATCCATGGTCGTATAATATATACTCCATCCGTTCTAAAATATAAGTATTTTTAGCTATGAACGCTTATATTTTAAGACGGAGGGAGTACCAAACACTATTCATTATTGTCGATGCAAATTTCAGTGAAGATGTGACATCTTTGGTCAGGGAG ACAAATGATCAGCCAATTGACAAGGTG ATCTGATGCTCCTAGCTTCGTCTACCTATAGATTTATTTGTTGCTGCTCCCATCATCAGATCAGACCACCAGCTGTATGAGTATATACACAGTTTGTATGCTAAATTCTTTCTAAATAAACA ] [+] EMBL AU089664 [ TCAGGGAGTACAAATGATCAGCCAATTGACAAGGTGCATCTGATGCTCCTAGCTTCGTCTACCTATACATTTATTTGTTGCTGCTCCCATCATCAGATCAGACCACCAGCTGTATGAGTATATACACAGTTTGTATGCTAAATTCTTTCTAAATAAACATCCTTATGCAAATGTGTTGATAAAAA] consensusID : consensus_13888#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 929 fasta sequence [AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGCCAGCATTGACAGGCACTTAGCTAAGTACGTAGCTATATAGCTTCTCCTGCTTGTTCATAATAAGCAAATAATTAACAATGCAAGGCCGGATGGTGACATGGTCCATGGCGTCTGTGATCGTCGCCGCGGCCTGCATCTTCCTCAGCTGCTCTGCGAGCGTCGCCCATGGAAGGAGATTCGTCAGGAGTAGTAGCTACGACAAGCCGTGCAAGGAGATGAGGCTCTACCTCCACGACATCCTCTACGACTACAGCAACAGCACCTCCAACTCCACGTCGGCGGCGGCCACCAAGCCGACGGCGC-TGGCCACCGCCGTGCCGTCGACCGGCGGCACCTTCTTCGGGCAGGTGGTGGTGTTCAACGACCCGATGACGGAGGGGAGGGCGCTGCCGCCGTCGCTGGAGGAGACGGCGGTGCGCGCGCAGGGGGTCTACCTCTACAACAGCAAGGAGGCGTTCAACGCGTGGTTCGCCTTCTCCATCGTGTTCAACTCCACGGGGCGCCGCGGCACGCTCAACCTCATGGGCGCCGACATCATCGCCGAGAAGACGAGGGACATCTCCGTCGTGGGCGGCACCGGCGACTTCTTCATGTCCCGCGGCGTCGCCACCCTCCGCACCGACGCCTTCGAGGGCTTCACCTACTTCCGGCTGCAGATGGACATCAAGCTCTACGAATGCTACGTCGTCTGATTACGTTGCTCTGAATTCTGATAGATGGTAATTAACATATAATACTGCTATACACGGTGTGATGCGTGATTTATTTCCATCGCGAAATATACTTGTTTGCTTGACGAGTTATATGCACCGATGAATGTGC-AAAATGTATCCCAAC-TTTGTTT-ATTTTCATTCAATAAA-GATGAA-GTTTGCTNTAAAAAAAAAAAAAAAAAAAAAG] [+] EMBL AK106022 [AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGCCAGCATTGACAGGCACTTAGCTAAGTACGTAGCTATATAGCTTCTCCTGCTTGTTCATAATAAGCAAATAATTAACAATGCAAGGCCGGATGGTGACATGGTCCATGGCGTCTGTGATCGTCGCCGCGGCCTGCATCTTCCTCAGCTGCTCTGCGAGCGTCGCCCATGGAAGGAGATTCGTCAGGAGTAGTAGCTACGACAAGCCGTGCAAGGAGATGAGGCTCTACCTCCACGACATCCTCTACGACTACAGCAACAGCACCTCCAACTCCACGTCGGCGGCGGCCACCAAGCCGACGGCGC TGGCCACCGCCGTGCCGTCGACCGGCGGCACCTTCTTCGGGCAGGTGGTGGTGTTCAACGACCCGATGACGGAGGGGAGGGCGCTGCCGCCGTCGCTGGAGGAGACGGCGGTGCGCGCGCAGGGGGTCTACCTCTACAACAGCAAGGAGGCGTTCAACGCGTGGTTCGCCTTCTCCATCGTGTTCAACTCCACGGGGCGCCGCGGCACGCTCAACCTCATGGGCGCCGACATCATCGCCGAGAAGACGAGGGACATCTCCGTCGTGGGCGGCACCGGCGACTTCTTCATGTCCCGCGGCGTCGCCACCCTCCGCACCGACGCCTTCGAGGGCTTCACCTACTTCCGGCTGCAGATGGACATCAAGCTCTACGAATGCTACGTCGTCTGATTACGTTGCTCTGAATTCTGATAGATGGTAATTAACATATAATACTGCTATACACGGTGTGATGCGTGATTTATTTCCATCGCGAAATATACTTGTTTGCTTGACGAGTTATATGCACCGATGAATGTGC AAAATGTATCCCAAC TTTGTTT ATTTTCATTCAATAAA GATGA ] [+] EMBL OSR05571A [ ACAGGCACTTAGCTAAGTACGTAGCTATATAGCTTCTCCTGATTGTTCATAATAAGCAAATAATTAACAATGCAAGGCCGGATGGTGACATGGTCCATGGCGTCTGTGATCGTCGCCGCGGCCTGCATCTTCCTCAGCTGCTCTGCGAGCGTCGCCCATGGAAGGAGATTCGTCAGGAGTAGTAGCTACGACAAGCCGTGCAAGGNGATGNGGCTCTACCTCCACGACATCCTCTACGACTACAGCAACAGCACCTCCAACTCCANGTNGGCGGCGGCCACCAAGCCGNCGGCGCTTGGCCACCGCCGTGCCGT ] [+] EMBL AU065923 [ CTACAACAGCAAGGAGGCGTTCAACGCGTGGTTCGCCTTCTCCATCGTGTTCAACTCCACGGGGCGCCGCGGCACGCTCAACCTCATGGGCGCCGACATCATCGCCGAGAAGACGAGGGACATCTCCGTCGTGGGCGGCACCGGCGACTTCTTCATGTCCCGCGGCGTCGCCACCCTCCGCACCGACGCCTTCGAGGGCTTCACCTACTTCCGGCTGCAGATGGACATCAAGCTCTACGAATGCTACGTCGTCTGATTACGTTGCTCTGAATTCTGATAGATGGTAATTAACATATAATACTGCTATACACGGTGTGATGCGTGATTTATTTCCATCGGGAAATATACTTGTTTGCTTTACGAGTTATATGCACCGATGAATTTTCAAAAATGTATCCCAACTTTTGTTTAATTTTAATTCAATAAAGGNTGAAGGTTTGCTNTAAAAAAAAAAAAAAAAAAAAAG] [+] EMBL AU164576 [ ATGGGCGCCGACATCATCGCCGAGAAGACGAGGGACATCTCCGTCGT GGCGGCACCGGCGACTTCTTCATGTCCCGCGGCGTCGCCACCCTCCGCACCGACGCCTTCGAGGGCTTCACCTACTTCCGGCTGCAGATGGACATCAAGCTCTACGAATGCTACGTCGTCTGATTACGTTGCTCTGAATTCTGATAGATGGTAATTAACATATAATACTGCTATACACGGTGTGATGCGTGATTTATTTCCATCGCGAAATATACTTGTTTGCTTGACGAGTTATATGCACCGATGAATGTGC AAAATGTATCCCAAC TTTGTTT ATTTTCATTCAATAAA GATGAA GTTTGCTCTAAAAAAAAA ] consensusID : consensus_13888#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 718 fasta sequence [GCATGTGCGCGTTAGCTTANTTCTCACNAGCTGATCGATCACAGGTTATTCNATTAGTTAAGTTCAGCTACTTAATTAGCTAGCTCCATTACACTGCAAGCTAAGCCCANATCGATGGCAGCTTGGTCCATGGCGTCTCTGATGATCGTCGCCGCCATCTTCCTGCTCAGCCTCACCTCGGCGANCGTCGTCCATGGCCGGANCAACAGGAAGAAGTTCGTCAGGAGCTACGANGAACCGTGCATGGANATGANGCTCTNCCTCCACNACATCCTCTNCGANTNCAGCAACAGCACCACCAACTCCACGTTNGGGGGGGGCTCCAAGCCNACNGCGCTGAACACCCCGTGTCNAACCCCGGCTACTTCTTCCGCAGGGTGGTGGTGTTCAACCAACCCATNACAGANGGGAAGGCCTCCCCGTCCCTTGAAGAAACGGCNGTTNAAGGCGCAAGGGGCTCTTACCTTCTCCACAAGAAAGGANGANTTCCNNCNCCGTTGGTTCCCCCTTCCTCCATNCGTTGTTTCCAAATCCCACCGGGGNCGCCCCCCGGGNACCCCTCTAACCCTCCCNTTGGGGCGCCCCNAACCCCCCAAACCNCCCNNCNAAACAAAANGGGAANCTTCCTNCCCCTTTGGGTTTGGGGGGCGGGGNAANCCCNGGGGCNAAANATTCCCCTCCCCNTTNTTTCNCCGCCCGGGGGGTTTTTNNCCCNANC] [+] EMBL BE229782 [GCATGTGCGCGTTAGCTTANTTCTCACNAGCTGATCGATCACAGGTTATTCNATTAGTTAAGTTCAGCTACTTAATTAGCTAGCTCCATTACACTGCAAGCTAAGCCCANATCGATGGCAGCTTGGTCCATGGCGTCTCTGATGATCGTCGCCGCCATCTTCCTGCTCAGCCTCACCTCGGCGANCGTCGTCCATGGCCGGANCAACAGGAAGAAGTTCGTCAGGAGCTACGANGAACCGTGCATGGANATGANGCTCTNCCTCCACNACATCCTCTNCGANTNCAGCAACAGCACCACCAACTCCACGTTNGGGGGGGGCTCCAAGCCNACNGCGCTGAACACCCCGTGTCNAACCCCGGCTACTTCTTCCGCAGGGTGGTGGTGTTCAACCAACCCATNACAGANGGGAAGGCCTCCCCGTCCCTTGAAGAAACGGCNGTTNAAGGCGCAAGGGGCTCTTACCTTCTCCACAAGAAAGGANGANTTCCNNCNCCGTTGGTTCCCCCTTCCTCCATNCGTTGTTTCCAAATCCCACCGGGGNCGCCCCCCGGGNACCCCTCTAACCCTCCCNTTGGGGCGCCCCNAACCCCCCAAACCNCCCNNCNAAACAAAANGGGAANCTTCCTNCCCCTTTGGGTTTGGGGGGCGGGGNAANCCCNGGGGCNAAANATTCCCCTCCCCNTTNTTTCNCCGCCCGGGGGGTTTTTNNCCCNANC] consensusID : consensus_13888#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 635 fasta sequence [AGCTAACACGTACTGTTTTGCATGCGCGCGCTTAGCTTAATTCTCACGAGCTGATCGATCACAGGTTATTCAATTAGTTAAGTTCAGCTACTTAATTAGCTAGCTCCATTACACTGCAAGCTAGGCCCAGATCGATGGCAGCTTGGTCCATGGCGTCTCTGATGATCGTCGCCGCCATCTTCCTGCTCAGCCTCACCTCGGCGAGCGTCGTCCATGGCCGGAGCAGCAGGAGGAGGTTCGTCAGGAGCTACGACGAGCCGTGCATGGAGATGAGGCTCTACCTCCACGACATCCTCTACGACTACAGCAACAGCACCACCAACTCCACGTCGGCGGCGGCCACCAAGCCGAAGGCGCTGAGCACCGCCGTGTCGAGCCCCGGCTACTTCTTCGGGCGGGTGGTGGTGTTCAACNACCCNATNACCGANGGGANGGCGCTGCCGCCGTCCCTNGAAGAAACGGCGGTGAAGGCGCATGGGCTCTACCTTCTCNACNAGAANGACNACTTCNGCGCGTGGTTCGCCTTCTCCCTCGTGTTCAACTCCACGGGGCGCCGCGGNACGCTCAACCTCCNTGGGGCGCCGAACCCAACCCCGCGAACAAAGGGACATCTCCNTGGTGGGNGGGCACCCGNC] [+] EMBL AU096400 [AGCTAACACGTACTGTTTTGCATGCGCGCGCTTAGCTTAATTCTCACGAGCTGATCGATCACAGGTTATTCAATTAGTTAAGTTCAGCTACTTAATTAGCTAGCTCCATTACACTGCAAGCTAGGCCCAGATCGATGGCAGCTTGGTCCATGGCGTCTCTGATGATCGTCGCCGCCATCTTCCTGCTCAGCCTCACCTCGGCGAGCGTCGTCCATGGCCGGAGCAGCAGGAGGAGGTTCGTCAGGAGCTACGACGAGCCGTGCATGGAGATGAGGCTCTACCTCCACGACATCCTCTACGACTACAGCAACAGCACCACCAACTCCACGTCGGCGGCGGCCACCAAGCCGAAGGCGCTGAGCACCGCCGTGTCGAGCCCCGGCTACTTCTTCGGGC ] [+] EMBL BE229773 [ gTTAGCTTAATTCTCACGAGCTGATCGATCACNGGTTATTCNATTAGTTANGTTCAGCTACTTAATTAGCTNGCTCCATTACNCTGCAAGCTAAGCCCAGATCGATGGCAGCTTGGTCCATGGCGTCTCTGATGATCGTCGCCGCCATCTTCCTGCTCAGCCTCACCTCGGCGAGCGTCGTCCATGGCCGGAGCANCAGGANGAGGTTCGTCAGGAGCTACCACGANCCGTGCATGGAGATGAGGCTCTACCTCCACGACATCCTCTACGACTNCAGCAACAGCACCNCCAACTCCACGTCGGCGGCGGCCACCAAGCCGACGGCGCTGANCACCGCCGTGTCNANCCCCGGCTACTTCTTCGGCAGGGTGGTGGTGTTCAACNACCCNATNACCGANGGGANGGCGCTGCCGCCGTCCCTNGAAGAAACGGCGGTGAAGGCGCATGGGCTCTACCTTCTCNACNAGAANGACNACTTCNGCGCGTGGTTCGCCTTCTCCCTCGTGTTCAACTCCACGGGGCGCCGCGGNACGCTCAACCTCCNTGGGGCGCCGAACCCAACCCCGCGAACAAAGGGACATCTCCNTGGTGGGNGGGCACCCGNC] consensusID : consensus_13888#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 328 fasta sequence [GAGATGAGGGACATCTCCGTCGTGGGCGGCACCGGTGACTTCTTCATGTCCCGCGGCGTCGCCACGCTCCGCACCGACGCCTTCGAGGGATTCACCTACTTCCGGCTGCAGATGGACATCAAACTCTATGAATGCTACGTCTGATAACTAATTAATCGATGCATGCATGGTGTGTGTGTGTGTGTATAGTAAACGTTTTATATGTCGATTGATGTGGTGTTTATTTAAAAGGAATTTGTTTCTCGATATTAGTATTTACTTGATGACGAGTACCTGCAGTATCTGTATGCACCGATGAGTGTGCAAATAAATGTAAACCAAACCCATT] [+] EMBL BE530925 [GAGATGAGGGACATCTCCGTCGTGGGCGGCACCGGTGACTTCTTCATGTCCCGCGGCGTCGCCACGCTCCGCACCGACGCCTTCGAGGGATTCACCTACTTCCGGCTGCAGATGGACATCAAACTCTATGAATGCTACGTCTGATAACTAATTAATCGATGCATGCATGGTGTGTGTGTGTGTGTATAGTAAACGTTTTATATGTCGATTGATGTGGTGTTTATTTAAAAGGAATTTGTTTCTCGATATTAGTATTTACTTGATGACGAGTACCTGCAGTATCTGTATGCACCGATGAGTGTGCAAATAAATGTAAACCAAACCCATT] consensusID : consensus_13888#6 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 316 fasta sequence [GCCGACCCCAACACCNAGATGAGGGACATCTCCGTCGTGGGCGGCACCGGTGACTTCTTCATGTCCCGCGGCGTCGCCACNTCCGCACCGACNCCTTCGAGGGATTCACCTACTTCCGGCTGCAGATGGACATCAAACTCTATGAATGCTACGTCTGATAACTAATTAATCGATGATGTGGTGTTTATTTAAAAGGAATTTGTTTCTCGATATTAGTATTTACTTGATGACGAGTACCTGCAGTATCTGTATGCACCGATGAGTGTGCAAATAAATGTAACCCAAACCCATTTATNTTTAAAAAAAAAAAAAAAAA] [+] EMBL AU033250 [GCCGACCCCAACACCNAGATGAGGGACATCTCCGTCGTGGGCGGCACCGGTGACTTCTTCATGTCCCGCGGCGTCGCCACNTCCGCACCGACNCCTTCGAGGGATTCACCTACTTCCGGCTGCAGATGGACATCAAACTCTATGAATGCTACGTCTGATAACTAATTAATCGATGATGTGGTGTTTATTTAAAAGGAATTTGTTTCTCGATATTAGTATTTACTTGATGACGAGTACCTGCAGTATCTGTATGCACCGATGAGTGTGCAAATAAATGTAACCCAAACCCATTTATNTTTAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13888#3 ------------------------------------------------------------ consensus_13888#4 ------------------------------------------------------------ consensus_13888#1 ------------------------------------------------------------ consensus_13888#0 ------------------------------------------------------------ consensus_13888#5 ------------------------------------------------------------ consensus_13888#6 ------------------------------------------------------------ consensus_13888#2 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGCCAGCATTGACAGGCACTTAGCTAAGTAC 60 consensus_13888#3 ------------------------------------------------------------ consensus_13888#4 ------------------------------------------------------------ consensus_13888#1 ------------------------------------------------------------ consensus_13888#0 ------------------------------------------------------------ consensus_13888#5 ------------------------------------------------------------ consensus_13888#6 ------------------------------------------------------------ consensus_13888#2 GTAGCTATATAGCTTCTCCTGCTTGTTCATAATAAGCAAATAATTAACAATGCAAGGCCG 120 consensus_13888#3 ------------------------------------------------------------ consensus_13888#4 ------------------------------------------------------------ consensus_13888#1 ------------------------------------------------------------ consensus_13888#0 ------------------------------------------------------------ consensus_13888#5 ------------------------------------------------------------ consensus_13888#6 ------------------------------------------------------------ consensus_13888#2 GATGGTGACATGGTCCATGGCGTCTGTGATCGTCGCCGCGGCCTGCATCTTCCTCAGCTG 180 consensus_13888#3 ------------------------------------------------------------ consensus_13888#4 ------------------------------------------------------------ consensus_13888#1 ------------------------------------------------------------ consensus_13888#0 ------------------------------------------------------------ consensus_13888#5 ------------------------------------------------------------ consensus_13888#6 ------------------------------------------------------------ consensus_13888#2 CTCTGCGAGCGTCGCCCATGGAAGGAGATTCGTCAGGAGTAGTAGCTACGACAAGCCGTG 240 consensus_13888#3 ------------------------------------------------------------ consensus_13888#4 ------------------------------------------------------------ consensus_13888#1 ------------------------------------------------------------ consensus_13888#0 ------------------------------------------------------------ consensus_13888#5 ------------------------------------------------------------ consensus_13888#6 ------------------------------------------------------------ consensus_13888#2 CAAGGAGATGAGGCTCTACCTCCACGACATCCTCTACGACTACAGCAACAGCACCTCCAA 300 consensus_13888#3 ------------------------------------------------------------ consensus_13888#4 ------------------------------------------------------------ consensus_13888#1 ------------------------------------------------------------ consensus_13888#0 ------------------------------------------------------------ consensus_13888#5 ------------------------------------------------------------ consensus_13888#6 ------------------------------------------------------------ consensus_13888#2 CTCCACGTCGGCGGCGGCCACCAAGCCGACGGCGCTGGCCACCGCCGTGCCGTCGACCGG 360 consensus_13888#3 ------------------------------------------------------------ consensus_13888#4 ------------------------------------------------------------ consensus_13888#1 ------------------------------------------------------------ consensus_13888#0 ------------------------------------------------------------ consensus_13888#5 ------------------------------------------------------------ consensus_13888#6 ------------------------------------------------------------ consensus_13888#2 CGGCACCTTCTTCGGGCAGGTGGTGGTGTTCAACGACCCGATGACGGAGGGGAGGGCGCT 420 consensus_13888#3 -------------------------------GCATGTGCGCG-TTAGCTTANTTCTCACN 28 consensus_13888#4 ------------AGCTAACACGTACTGTTTTGCATGCGCGCGCTTAGCTTAATTCTCACG 48 consensus_13888#1 ------------------------------------------------------------ consensus_13888#0 ------------------------------------------------------------ consensus_13888#5 ------------------------------------------------------------ consensus_13888#6 ------------------------------------------------------------ consensus_13888#2 GCCGCCGTCGCTGGAGGAGACGGCGGTGCGCGCGCAGGGGGTCTACCTCTACAACAGCAA 480 consensus_13888#3 AGCTGATCGATCACAGGTTATTCNATTAGTTAAGTTC--AGCTACTTAA-TTAGCTAGCT 85 consensus_13888#4 AGCTGATCGATCACAGGTTATTCAATTAGTTAAGTTC--AGCTACTTAA-TTAGCTAGCT 105 consensus_13888#1 ---------------------------------CTGC--AGCTAGCTAG-CTAAGC--TT 22 consensus_13888#0 GCAGCAACGTACGCGTACTGTCTAGTTAGCTAGCTTCTTAGCTTCGAACCTTCGATCTCT 60 consensus_13888#5 ------------------------------------------------------------ consensus_13888#6 ------------------------------------------------------------ consensus_13888#2 GGAGGCGTTCAACGCGTGGTTCGCCTTCTCCATCGTGTTCAACTCCACGGGGCGCCGCGG 540 consensus_13888#3 CCATTACACTGCAAGCTAAGCCCANATCGATGGCAGCTTGGTCCATGGCGTCTCTGATGA 145 consensus_13888#4 CCATTACACTGCAAGCTAGGCCCAGATCGATGGCAGCTTGGTCCATGGCGTCTCTGATGA 165 consensus_13888#1 GGATAACAGTGCAAG---GGCGCCG---GACGGCTACTTGGTCCATGGCGTCTCTGACGA 76 consensus_13888#0 CGATCACAG-GCTAATCAAGCTTAGCTTGATGGCAACTTGGTCCAATGCGTCGTCTCTGA 119 consensus_13888#5 ----------------------------------GAGA---TGAGGGACATCTCCGTCG- 22 consensus_13888#6 -------------------GCCGACCCCAACACCNAGA---TGAGGGACATCTCCGTCG- 37 consensus_13888#2 CACGCTCAACCTCATGGGCGCCGACATCATCGCCGAGAAGACGAGGGACATCTCCGTCG- 599 * ** * consensus_13888#3 TCGTCGCCGCCA---TCTTCCTGCTCAGCCTCACCTCGGCGANCGTCG---TCCATGGCC 199 consensus_13888#4 TCGTCGCCGCCA---TCTTCCTGCTCAGCCTCACCTCGGCGAGCGTCG---TCCATGGCC 219 consensus_13888#1 TCGTCGTCGCCACCATCTTCCTGCTCAGCCTCACCTCGGCGAGCGTCGCCGTCCATGGCC 136 consensus_13888#0 TCGTCGCCGCCG---TAATTCTGCTTGGCCTCAGCTCGGCAAGCGTCG---CGCATGGCC 173 consensus_13888#5 TGGGCGGCACCG----GTGACTTCTTCATGTC-CCGCGGCG-TCGCCACGCTCCGCA-CC 75 consensus_13888#6 TGGGCGGCACCG----GTGACTTCTTCATGTC-CCGCGGCG-TCGCCACN-TCCGCA-CC 89 consensus_13888#2 TGGGCGGCACCG----GCGACTTCTTCATGTC-CCGCGGCG-TCGCCACCCTCCGCA-CC 652 * * ** * ** ** ** ** * **** ** * * ** consensus_13888#3 GGANCAACAGGAAGAAGTTCGTCAGGAGCTACGANGAACCGTGCATGGANATGANGCTCT 259 consensus_13888#4 GGAGCAGCAGGAGGAGGTTCGTCAGGAGCTACGACGAGCCGTGCATGGAGATGAGGCTCT 279 consensus_13888#1 GGAGCAGCAGGAGGAGGTTCGTCAGGAGCTACGACGAGCCGTGCATGGAGATGAGGCTGT 196 consensus_13888#0 GCCGCGGCAGGAGGAGCTTCGTCTCCAGCTACGACGAGCCGTGCATGGAGATGAGGCTGT 233 consensus_13888#5 GACGCCTTCGAGGGA--TTCAC------CTACTTCCGGCTGCAGATGGACATCAAACTCT 127 consensus_13888#6 GACNCCTTCGAGGGA--TTCAC------CTACTTCCGGCTGCAGATGGACATCAAACTCT 141 consensus_13888#2 GACGCCTTCGAGGGC--TTCAC------CTACTTCCGGCTGCAGATGGACATCAAGCTCT 704 * * * * *** **** * * ***** ** * ** * consensus_13888#3 NCCTCCACNACATCCTCTNCGANTNCAGCAACAGCACCACCAACTCCACGTTNGGGGGGG 319 consensus_13888#4 ACCTCCACGACATCCTCTACGACTACAGCAACAGCACCACCAACTCCACGTCGGCGGCGG 339 consensus_13888#1 ACCTCCACGACATCCTCTACGACTACAGCAACAGCACCTCCAACTCCACGGCGGCGGCGG 256 consensus_13888#0 ACCTCCACGACATCATCTACGACTACAGTAACAGCACCTCCAACTCCACGTCGGCGGCGG 293 consensus_13888#5 ATGAATGCTACGTC--TGATAACTA-ATTAATCGATGCATGCATGGTGTGTGTGTGTGTG 184 consensus_13888#6 ATGAATGCTACGTC--TGATAACTA-ATTAATCGATG----------------------- 175 consensus_13888#2 ACGAATGCTACGTC--GTCTGATTACGTTGCTCTGAATTCTGATAGATGGTAATTAA--- 759 * ** ** * * consensus_13888#3 GCTCCAAGCCNACNGCGCTGAACACC-CCGTG---TCNAACCCCGGC--TACTTCTTCCG 373 consensus_13888#4 CCACCAAGCCGAAGGCGCTGAGCACCGCCGTG---TCGAGCCCCGGC--TACTTCTTCGG 394 consensus_13888#1 CCACCAAGCCGACGGCGCTGGCCAACGCCGTGCCGTCGACCGGCGGC--ACCTTCTTCGG 314 consensus_13888#0 CCACCAAGCCGACGCCGCTGAGCACCGCCGTG---TCCAACCCCGGC--TACTTCTTCGG 348 consensus_13888#5 TATAGTAAACGTTTTATATGTCGATTGATGTGGTGTTTATTTAAAA---GGAATTTGTTT 241 consensus_13888#6 ---------------------------ATGTGGTGTTTATTTAAAA---GGAATTTGTTT 205 consensus_13888#2 -CATATAATACTGCTATACACGGTGTGATGCGTGATTTATTTCCATCGCGAAATATACTT 818 * * * * * * consensus_13888#3 CAGGGTGGTGGTGTTCAACCAACCCATNACAGANGGGAAGGCCT---CCCCGTCCC---- 426 consensus_13888#4 GCGGGTGGTGGTGTTCAACNACCCNATNACCGANGGGANGGCGCTGCCGCCGTCCC---- 450 consensus_13888#1 CGAGGTGGTGGTGTTCAACGACCCGGTGACGGAGGGGAGGGCGCTGCCGCCGTCGC---- 370 consensus_13888#0 CGAGATGGTGGTGTTCAACGACCCCATGACGGAGGGGAGGGCGCTGCCGCCGTCGCCGGC 408 consensus_13888#5 CTCGATATTAGTATTTACTTGA----TGACG--AGTACCTGCAGTATCTGTATGCA---- 291 consensus_13888#6 CTCGATATTAGTATTTACTTGA----TGACG--AGTACCTGCAGTATCTGTATGCA---- 255 consensus_13888#2 GTTTGCTTGACGAGTTATATGCAC--CGATG--AATGTGCAAAATGTATCCCAACT---- 870 * * * consensus_13888#3 --TTGAAGAAACGGCNGTTNAAGGCGCAAGGGGCTCTTACCTTCTCCACAAGAAAGGANG 484 consensus_13888#4 --TNGAAGAAACGGCGGT-GAAGGCGCATGGG--CTCTACCTTCTCNACNAGAANG-ACN 504 consensus_13888#1 --TGGAGGAGACGGCGGT-GAGGGCGCAGGGG--CTCTACCTCTACAACAGCAAGG-AGG 424 consensus_13888#0 GATGGAGGAGGAGACGGCAGTGCGCGCGCAGGGGGTCTACCTCTACGACAAGAAGG-AGG 467 consensus_13888#5 --CCGATGAGTGTGCAAATAAATGTAAACCAAACCCATT--------------------- 328 consensus_13888#6 --CCGATGAGTGTGCAAATAAATGTAACCCAAACCCATTTATNTTTAAAAAAAAAAAAAA 313 consensus_13888#2 --TTGTTTATTTTC--ATTCAATAAAGATGAAGTTTGCTNTAAAAAAAAAAAAAAAAAAA 926 * * consensus_13888#3 ANTTCCNNCNCCGTTGGTTCCCCCTTCCTCCATNCGTTGTTTCCAAATCCCACCGGGGNC 544 consensus_13888#4 ACTTCNGCGC---GTGGTTCGCCTTCTCCC------TCGTGTTCAA-CTCCAC--GGGGC 552 consensus_13888#1 CGTTCAACGC---GTGGCTCGCCTTCTCCA------TCGTGTTCAA-CTCCAC--GGGGC 472 consensus_13888#0 CGCCCAACGC---GTGGTTCGCCTTCTCCG------TGGTGTTCAA-CTCCAC--GGGGC 515 consensus_13888#5 ------------------------------------------------------------ consensus_13888#6 AAA--------------------------------------------------------- 316 consensus_13888#2 AAG--------------------------------------------------------- 929 consensus_13888#3 GCCCCCCGGGNACCCCTCTAACCCTCCCNTTGGGGCGCCCCNAACCCCCCAAAC-CNCCC 603 consensus_13888#4 GCCGC---GGNACGCTC--AACCTCCNTGGGGCGCCGAACCCAACCCCGCGAAC-AAAGG 606 consensus_13888#1 GCCGC---GGCACGCTC---AACCTCATGG-GCGCCGACATCATCGCCGAGAAGACGAGG 525 consensus_13888#0 GCCGC---GGCACGCTC---AACCTGATGG-GCGCCGACCTCATGTCGGAGAAGACGAGG 568 consensus_13888#5 ------------------------------------------------------------ consensus_13888#6 ------------------------------------------------------------ consensus_13888#2 ------------------------------------------------------------ consensus_13888#3 NNCNAAACAA-AANGGGAANCTTCC-TNCCCCTTTGGGTTTGGGGGGCGGGGNAANCCCN 661 consensus_13888#4 GACATCTCCNTGGTGGGNGGGCACC-CGNC------------------------------ 635 consensus_13888#1 GACATCTCCGTCGTGGGCGGCACCGGCGACTTCTTCATGTCGCGCGGCGTCGCCACCCTC 585 consensus_13888#0 GACCTCTCCGTCGTGGGTGGCACCGGCGACTTCTTCATGTCCCGCGGCGTCGCCACGCTC 628 consensus_13888#5 ------------------------------------------------------------ consensus_13888#6 ------------------------------------------------------------ consensus_13888#2 ------------------------------------------------------------ consensus_13888#3 GGGGCNAAANA---TTCCC----CTCCCCNTTNTTTCNCCGCCCGGGGGGTTTTTNNCCC 714 consensus_13888#4 ------------------------------------------------------------ consensus_13888#1 CGCACCGACGC---TTTCGAGGGCTTCACCTACTTCAGGCTGCAGATGGACATCAAGCTC 642 consensus_13888#0 AGCACCGACGAGGCCTCGGCGGACTTGTCATACTTCCGGGTGAAGGTGGACATCAAGCTC 688 consensus_13888#5 ------------------------------------------------------------ consensus_13888#6 ------------------------------------------------------------ consensus_13888#2 ------------------------------------------------------------ consensus_13888#3 NANC-------------------------------------------------------- 718 consensus_13888#4 ------------------------------------------------------------ consensus_13888#1 TACGAGTGCTACGTATGATGCATCCATCCATGGTCGTATAATATATACTCCATCCGTTCT 702 consensus_13888#0 TACGAATGCTACGTCTGAT-CCCATGCATACGTACGCTTGCTCTTTCATGGCCGTGGATC 747 consensus_13888#5 ------------------------------------------------------------ consensus_13888#6 ------------------------------------------------------------ consensus_13888#2 ------------------------------------------------------------ consensus_13888#3 ------------------------------------------------------------ consensus_13888#4 ------------------------------------------------------------ consensus_13888#1 AAAATATAAGTATTTTTAGCTATGAACGCTTATATTTTAAGACGGAGGGAGTACCAAACA 762 consensus_13888#0 GGATCATCGCGTGTCCTAAATATGCGCTTGTAT---TTGTGTGATTGTGTGTGTTGAATT 804 consensus_13888#5 ------------------------------------------------------------ consensus_13888#6 ------------------------------------------------------------ consensus_13888#2 ------------------------------------------------------------ consensus_13888#3 ------------------------------------------------------------ consensus_13888#4 ------------------------------------------------------------ consensus_13888#1 CTATTCATTATTGTCGATGCAAATTTCAGTGAAGATGTGACATCTTTGGTCAGGGAGACA 822 consensus_13888#0 TCCTTCTTGACATTCATCATCTTTGCGTGACGAGTCATATGCACGGAGAAATGTGCAAAA 864 consensus_13888#5 ------------------------------------------------------------ consensus_13888#6 ------------------------------------------------------------ consensus_13888#2 ------------------------------------------------------------ consensus_13888#3 ------------------------------------------------------------ consensus_13888#4 ------------------------------------------------------------ consensus_13888#1 AATGATCAGCCAATTGACAAGGTGATCTGATGCTCCTAGCTTCGTCTACCTATAGATTTA 882 consensus_13888#0 TGTGTTTTTTTTTTCGTGTTTTGGATTTGCATCTCATGTATTGTTTGAGTGACGAGTCAG 924 consensus_13888#5 ------------------------------------------------------------ consensus_13888#6 ------------------------------------------------------------ consensus_13888#2 ------------------------------------------------------------ consensus_13888#3 ------------------------------------------------------------ consensus_13888#4 ------------------------------------------------------------ consensus_13888#1 TTTGTTGCT-GCTCCCATCATCAGATCAGACCACCAGCTGTATGAGTATATACACAGTTT 941 consensus_13888#0 CGATCGGCTTGGCGTGGTGGTTTGTTTTGTCTTTCTTTTTCCTGGTTATAATCTTCATAG 984 consensus_13888#5 ------------------------------------------------------------ consensus_13888#6 ------------------------------------------------------------ consensus_13888#2 ------------------------------------------------------------ consensus_13888#3 ------------------------------------------------------------ consensus_13888#4 ------------------------------------------------------------ consensus_13888#1 GTATGCTAAATTCTTTCTAAATAAACATCCTTATGCAAATGTGTTGATAAAAA------- 994 consensus_13888#0 TTATAATCTTATAATTTTTTTTCTACATCAATATAAAATCTTGTATTAAAAAAAAAAAAA 1044 consensus_13888#5 ------------------------------------------------------------ consensus_13888#6 ------------------------------------------------------------ consensus_13888#2 ------------------------------------------------------------ consensus_13888#3 ------ consensus_13888#4 ------ consensus_13888#1 ------ consensus_13888#0 AAAAAA 1050 consensus_13888#5 ------ consensus_13888#6 ------ consensus_13888#2 ------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||