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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13889#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 2162 fasta sequence
[ATCCGAAGCCGTCTTCCTCCTCCCCCCACGCCGGCGACGACGACCAACCCTAGACCCGCCGCCTCCTCCGCCGCCGCCGCCGCCGCCGGCCACCGCGAGAGGTAACGACCTCTCCTCCCGCATCTCCCCCTCCCTCTCCTTCCCACCATGGGGAGCAAGGGGAGGGCGCCGCCGCCTTACCACCACCGGGGGGCGCACAAGATGATGCACCGGGACCCGTACGGGGGGGCACCGGGGATGCCGGGGCCGTTCCCGTACGACATGCT-GGCGGCGGCGGCGCCGCCGCCGGAGATCCTGGAGCAGAAGCTGATGGCGCAGCGGGGGGAGCTGCAGAAGCTGGCGGTGGAGAACGACCGGCTGGCGATGAGCCACGACTCGCTGCGGAAGGAGCTCGCCGCGGCGCAGCAGGAGGCGCAGAGGCTGCAGGCGCAGGGGCAGGCGGCGATGGCGGCCGAGGAGCAGGAGGCGAGGGGGATCCTCGACAAGGTCGCCAAGATGGAGGCCGACCTCAAGGCCCGCGACCCCGTCAAGGCCGAGCTGCAGCAGGCGCACGCCGAGGCGCAGGGCCTCGTCGTCGCGAGGCAGCAGCTGGCCGCCGACACGCAGAAGCTGAGCAAGGACCTGCAGAGGAACCTCGGCGAGGCGCAGCAGCTCCCCGCGCTCGTGGCCGAGCGCGACGCCGCTAGGCAGGGGTATCAGCACCTCAGGGCTACGTATGAGTACGAAAGGAAACTCAGGATGGATCACTCCGAGTCGCTGCAGGTGATGAAGAGGAATTATGACACCATGGTCGCTGAGCTAGACAAGCTTCGTGCTGAGCTGATGAACACGGCTAATATTGACAGAGGAGGCATGCCGTTTATCTGTTGTTCCATTTTTTTTACCACAATTTTTGGGTAGCATATATAGAAACCACACCATGAGACATTTTCTATGTGTAGGTATGCTATACAATACTAATACTGCTCAAAAGGATGATGGCGCGCCTAGTCTTCCTGTTGGACAAATTGCTTATGATAGTGGTTATGGAGCTGCGCAGGGAAGGACACCACCTGCTGGACTGGGAGACTCTTTAAGCGGAAACCCAGCTGGCACAGCTCCTCGGACTGGATTTGATCCATCAAGAGGCAATATGTATGACGCTTCTCGTATTGCTAGCTTCAGTTCTTCAAAAGCTGGAGGACATGATGCATCAAGGGGTGCCGCAGGCTACAATTCTTTGAAAGGTGCTGGATATGATCCTTCTAAAGCACCTGCACTTGGAGGACAGGCAACAGCTGCAGCTGCTCATGGGAGTAGTGCTGATTACTATGGATCAAATCAGGCAACACCACCTTCATATGCTTGGGGACAAGCTGCATCCGCTTATGGATCTGCACAAGTGCCACAGTCACATGCATCTGGACCTCCTGTTCAATCAACATCCTACAGTGCAACAACAGCACGTAACTTTGGCTCTGCCCAGGCTTTACCATCATATGCACATGCACAGGAGCAACCTTCATATGGACACGCACAGCTACCATCC-TCGTATGGATTAGCGCAAGCATCATTTCCA-TTTGCCCCAGCGCAA-GGGGTGTCACCCTATGGGTCAGGTGCACAGCCTCCGCAGTATGGAGCTGGGCAAGCAGCAACTAATCCTGGCAGTGCTTACCAAGCACCTCATGGACGTAAATAAATCGGCAAAAGTTGTCTACTGATGGATTGTTATTGGCAAAAGAGACAATGCGCTGCTTTGTACACCAGAGTTCAGTTTCCT-TTCCACAGCTACCAAATCTTGTCGTTTAACTGATATGAGGTGATTCCTGAATATAGTCTGGAGAAGTAATGCTCTGCAAGATGGGAATGCTTCTGTAAAGTGTAAACTTGTCGTCGGTGTTTTAACTGCC-TTTTTTTATACCTTCAAGCCTCCAGGTTAGGCAACCCATGGAAGCATGAATTCTGACAAGAGCTGTAACTGTTGATTCTTATTTGATT-TGTCAAAGTTAGTCGATTGTTTGTTAGTTCAAACTCAAATGCTGCATGTATGATATGAGATATACACTGCTAGTTCTGGGAGGTTAATAATATGCCCGTGCTGGAGATTCTCAATGTTTATCATGCATGCATTCGTTCTGTTTATCCTGTAAATGCGCATGCCCAGGATGCATACATCCGACATT]
[+] EMBL AK100401 [ATCCGAAGCCGTCTTCCTCCTCCCCCCACGCCGGCGACGACGACCAACCCTAGACCCGCCGCCTCCTCCGCCGCCGCCGCCGCCGCCGGCCACCGCGAGAGGTAACGACCTCTCCTCCCGCATCTCCCCCTCCCTCTCCTTCCCACCATGGGGAGCAAGGGGAGGGCGCCGCCGCCTTACCACCACCGGGGGGCGCACAAGATGATGCACCGGGACCCGTACGGGGGGGCACCGGGGATGCCGGGGCCGTTCCCGTACGACATGCT GGCGGCGGCGGCGCCGCCGCCGGAGATCCTGGAGCAGAAGCTGATGGCGCAGCGGGGGGAGCTGCAGAAGCTGGCGGTGGAGGACGACCGGCTGGCGATGAGCCACGACTCGCTGCGGAAGGAGCTCGCCGCGGCGCAGCAGGAGGCGCAGAGGCTGCAGGCGCAGGGGCAGGCGGCGATGGCGGCCGAGGAGCAGGAGGCGAGGGGGATCCTCGACAAGGTCGCCAAGATGGAGGCCGACCTCAAGGCCCGCGACCCCGTCAAGGCCGAGCTGCAGCAGGCGCACGCCGAGGCGCAGGGCCTCGTCGTCGCGAGGCAGCAGCTGGCCGCCGACACGCAGAAGCTGAGCAAGGACCTGCAGAGGAACCTCGGCGAGGCGCAGCAGCTCCCCGCGCTCGTGGCCGAGCGCGACGCCGCTAGGCAGGGGTATCAGCACCTCAGGGCTACGTATGAGTACGAAAGGAAACTCAGGATGGATCACTCCGAGTCGCTGCAGGTGATGAAGAGGAATTATGACACCATGGTCGCTGAGCTAGACAAGCTTCGTGCTGAGCTGATGAACACGGCTAATATTGACAGAGGAGGCATGCCGTTTATCTGTTGTTCCATTTTTTTTACCACAATTTTTGGGTAGCATATATAGAAACCACACCATGAGACATTTTCTATGTGTAGGTATGCTATACAATACTAATACTGCTCAAAAGGATGATGGCGCGCCTAGTCTTCCTGTTGGACAAATTGCTTATGATAGTGGTTATGGAGCTGCGCAGGGAAGGACACCACCTGCTGGACTGGGAGACTCTTTAAGCGGAAACCCAGCTGGCACAGCTCCTCGGACTGGATTTGATCCATCAAGAGGCAATATGTATGACGCTTCTCGTATTGCTAGCTTCAGTTCTTCAAAAGCTGGAGGACATGATGCATCAAGGGGTGCCGCAGGCTACAATTCTTTGAAAGGTGCTGGATATGATCCTTCTAAAGCACCTGCACTTGGAGGACAGGCAACAGCTGCAGCTGCTCATGGGAGTAGTGCTGATTACTATGGATCAAATCAGGCAACACCACCTTCATATGCTTGGGGACAAGCTGCATCCGCTTATGGATCTGCACAAGTGCCACAGTCACATGCATCTGGACCTCCTGTTCAATCAACATCCTACAGTGCAACAACAGCACGTAACTTTGGCTCTGCCCAGGCTTTACCATCATATGCACATGCACAGGAGCAACCTTCATATGGACACGCACAGCTACCATCC TCATATGGATTAGCGCAAGCATCATTTCCA TTTGCCCCAGCGCAA GGGGTGTCACCCTATGGGTCAGGTGCACAGCCTCCGCAGTATGGAGCTGGGCAAGCAGCAACTAATCCTGGCAGTGCTTACCAAGCACCTCATGGACGTAAATAAATCGGCAAAAGTTGTCTACTGATGGATTGTTATTGGCAAAAGAGACAATGCGCTGCTTTGTACACCAGAGTTCAGTTTCCT TTCCACAGCTACCAAATCTTGTCGTTTAACTGATATGAGGTGATTCCTGAATATAGTCTGGAGAAGTAATGCTCTGCAAGATGGGAATGCTTCTGTAAAGTGTAAACTTGTCGTCGGTGTTTTAACTGCC TTTTTTTATACCTTCAAGCCTCCAGGTTAGGCAACCCATGGAAGCATGAATTCTGACAAGAGCTGTAACTGTTGATTCTTATTTGATT TGTCAAAGTTAGTCGATTGTTTGTTAGTTCAAACTCAAATGCTGCATGTATGGTATGAGATATACACTGCTAGTTCTGGGAGGTTAATAATATGCCCGTGCTGGAGATTCTCAATGTTTATCATGCATGCATTCGTTCTGTTTATCCTGTAAATGCGCATGCCCAGGATGCATACATCCGACATT]
[+] EMBL CB656679 [ ACGCCGGCGACGACGACCAACCCTAGACCCGCCGCCTCCTCCGCCGCCGCCGCCGCCGCCGGCCACCGCGAGAGGTAACGACCTCTCCTCCCGCATCTCCCCCTCCCTCTCCTTCCCACCATGGGGAGCAAGGGGAGGGCGCCGCCGCCTTACCACCACCGGGGGGCGCACAAGATGATGCACCGGGACCCGTACGGGGGGGCACCGGGGATGCCGGGGCCGTTCCCGTACGACATGCT GGCGGCGGCGGCGCCGCCGCCGGAGATCCTGGAGCAGAAGCTGATGGCGCAGCGGGGGGAGCTGCAGAAGCTGGCGGTGGAGAACGACCGGCTGGCGATGAGCCACGACTCGCTGCGGAAGGAGCTCGCCGCGGCGCAGCAGGAGGCGCAGAGGCTGCAGGCGCAGGGGCAGGCGGCGATGGCGGCCGAGGAGCAGGAGGCGAGGGGGATCCTCGACAAGGTCGCCAAGATGGAGGCCGACCTCAAGGCCCGCGACCCCGTCAAGGCCGAGCTGCAGCAGGCGCACGCCGAGGCGCAGGGCCTCGTCGTCGCGAGGCAGCAGCTGGCCGCCGACACGCAGAAGCTGAGCAAGGACCTGCAGAGGAACCTCGGCGAGGCGCAGCAGCTCCCCGCGCTCGTGGCCGAGCGCGACGCCGCTAGGCAGGAGTATCAGCACCTCAGGGCTACGTATGAGTACGAAAGGAAACTCAGGATGGATCACTCCGAGTCGCTGCAGGTGATGAAGAGGGATTATGACACCATGGTCGCTGAGCTAGACAAGCTTCGTGCTGAGCTGATGAACACGGCTAATATTGACAGAGGAGG ]
[+] EMBL CB632826 [ CGCCGGCGACGACGACCAACCCTAGACCCGCCGCCTCCTCCGCCGCCGCCGCCGCCGGCGGCCACCGCGAGAGGTAACGACCTCTCCTCCCGCATCTCCCCCTCCCTCTCCTTCCCACCATGGGGAGCAAGGGGAGGGCGCCGCCGCCTTACCACCACCGGGGGGCGCACGAGATGATGCACCGGGACCCGTACGGGGGGGCACCGGGGATGCCGGGGCCGTTCCCGTACGA AGCCTGGGCGGCGGCGGCGCCGCCGCCGGAGATCCTGGAGCAGAAGCTGATGGCGCAGCGAGGGGAGCTGCAGAAGCTGGCGGTGGAGAACGACCGGCTGGCGATGAGCCACGACTCGCTGCGGAAGGAGCTCGCCGCGGCGCAGCAGGAGGCGCAGAGGCTGCAGGCGCAGGGGCAGGCGGCGAGGGCGGCCGAGGAGCAGGAGGCGAGGGGGATCCTCGACAAGGTCGCCAAGATGGAGGCCGACCTCTAGGCCCGCGACCCCGTCGAGGCCGAGCTGCAGCATGCGCACGCCGAGGCGCAGGGCCTCGTCTTCGCGAGGCAGCAGGTGGCCGCCGACACGCAGAATCTGAGCAAGGACCTGCAGATGAACCTCTGCG ]
[+] EMBL CB640387 [ CGACCAACCCTAGACCCGCCGCCTCCTCCGCCGCCGCCGCCGCCGCCGGCCACCGCGAGAGGTAACGACCTCTCCTCCCGCATCTCCCCCTCCCTCTCCTTCCCACCATGGGGAGCAAGGGGAGGGCGCCGCCGCCTTACCACCACCGGGGGGCGCACAAGATGATGCACCGGGACCCGTACGGGGGGGCACCGGGGATGCCGGGGCCGTTCCCGTACGACA ]
[+] EMBL CA999196 [ GCCTAGTCTTCCTGTTGGACAAATTGCTTATGATAGCGGTTATGGAGCTGCGCAGGGAAGGACACCACCTGCTGGACTGGGAGACTCTTTAAGCGGAAACCCAGCTGGCACAGCTCCTCGGACTGGATTTGATCCATCAAGAGGCAATATGTATGACGCTTCTCGTATTGCTAGCTTCAGTTCTTCAAAAGCTGGAGGACATGATGCATCAAGGGGTGCCGCAGGCTACAATTCTTTGAAAGGTGCTGGATATGATCCTTCTAAAGCACCTGCACTTGGAGGACAGGCAACAGCTGCAGCTGCTCATGGGAGTAGTGCTGATTACTATGGATCAAATCAGGCAACACCACCTTCATATGCTTGGGGACAAGCTGCATCCGCTTATGGATCTGCACAAGTGCCACAGTCACATGCATCTGGACCTCCTGTTCAATCAACATCCTACAGTGCAACAACAGCACGTAA ]
[-] EMBL CB656680 [ GTGCTGATTACTATGGATCAAATCAGGCAACACCACCTTCATATGCTTGGGGACAAGCTGCATCCGCTTATGGATCTGCACAAGTGCCACAGTCACATGCATCTGGACCTCCTGTTCAATCAACATCCTACAGTGCAACAACAGCACGTAACTTTGGCTCTGCCCAGGCTTTACCATCATATGCACATGCACAGGAGCAACCTTCATATGGACACGCACAGCTACCATCC TCATATGGATTAGCGCAAGCATCATTTCCA TTTGCCCCAGCGCAA GGGGTGTCACCCTATGGGTCAGGTGCACAGCCTCCGCAGTATGGAGCTGGGCAAGCAGCAACTAATCCTGGCAGTGCTTACCAAGCACCTCATGGACGTAAATAAATCGGCAAAAGTTGTCTACTGATGGATTGTTATTGGCAAAAGAGACAATGCGCTGCTTTGTACACCAGAGTTCAGTTTCCT TTCCACAGCTACCAAATCTTGTCGTTTAACTGATATGAGGTGATTCCTGAATATAGTCTGGAGAAGTAATGCTCTGCAAGATGGGAATGCTTCTGTAAAGTGTAAACTTGTCGTCGGTGTTTTAACTGCCTTTTTTTTATACCTTCAAGCCTCCAGGTTAGGCAACCCATGGAAGCATGAATTCTGACAAGAGCTGTAACTGTTGATTCTTATTTGATT TGTCAAAGTTAGTCGATTGTTTGTTAGTTCAAACTCAAATGCTGCATGTATGATATGAGATATACACTGCTAGTTCTGGGAGGTTAATAATATGCCCGTGCTGGAGATT ]
[-] EMBL CB632827 [ CACATGCATCTGGACCTCCTGTTCAATCAACATCCTACAGTGCAACAACAGCACGTAACTTTGGCTCTGCCCAGGCTTTACCATCATATGCACATGCACAGGAGCAACCTTCATATGGACACGCACAGCTACCATCC TCGTATGGATTAGCGCAAGCATCATTTCCA TTTGCCCCAGCGCAA GGGGTGTCACCCTATGGGTCAGGTGCACAGCCTCCGCAGTATGGAGCTGGGCAAGCAGCAACTAATCCTGGCAGTGCTTACCAAGCCCCTCATGGACGTAAATAAATCGGCAAAAGTTGTCTACTGATGGATTGTTATTGGCAAAAGAGACAATGCGCTGCTTTGTACACCAGAGTTCAGTTTCCT TTCCCCAGCTACCAAATCTTGTCGTTTAACTGATATGAGGTGATTCCTGAATATAGTCTGGAGAAGTAATGTTCTGCAAGATGGGAATGCTTCTGTAAAGCGTAAACTTGTCGTCGGTGTTTTAACTGCC TTTTTTTATCCCTTCAAGCCTCCAGGTTAGGCAACCCATGGAAGCATGAATTTTGACAAGAGCTGTAACTGTTGATTCTTATTTGATT TGTCAAAGTTAGTCGATTGTTTGTTAGTTCAAACTCAAATGCTGCATGTATGATATGAGATATCCCCTGCTAGTTCTGGGAGGTTAATAATATGCCCGTGCTGGAGATTC ]
[+] EMBL BQ907148 [ CTCTGCCCAGGCTTTACCATCATATGCACATGCACAGGAGCAACCTTCATATGGACACGCACAGCTACCATCC TCGTATGGATTAGCGCAAGCATCATTTCCA TTTGCCCCAGCGCAA GGGGTGTCACCCTATGGGTCAGGTGCACAGCCTCCGCAGTATGGAGCTGGGCAAGCAGCAACTAATCCTGGCAGTGCTTACCAAGCACCTCATGGACGTAAATAAATCGGCAAAAGTTGTCTACTGATGGATTGTTATTGGCAAAAGAGACAATGCGCTGCTTTGTACACCAGAGTTCAGTTTCCT TTCCACAGCTACCAAATCTTGTCGTTTAACTGATATGAGGTGATTCCTGAATATAGTCTGGAGAAGTAATGCTCTGCAAGATGGGAATGCTTCTGTAAAGTGTAAACTTGTCGTCGGTGTTTTAACTGCC TTTTTTTATACCTTCAAGCCTCCAGGTTAGGCAACCCATGGAAGCATGAATTCTGACAAGAGCTGTAACTGTTGATTCTTATTTGATTNCGTCAAAGTTAGTCGATTGTTTGTTAaaaaaa ]
[+] EMBL BI812788 [ taGCACATGCACAGGA CAA CTTCATATGGACACGCACAGCTACCATCC TCGTATGGATTAGCGCAAGCATCATTTCCACTTTGCCCCAGCGCAA GGGGTGTCACCCTATGGGTCAGGTGCACAGCCTCC CAGTATGGAGCTGGGCAAGCAGCAACTAATCCTGGCAGTGCTTACCAAGCACCTCATGGACGTAAATAAATCGGC AAAGTTGTCTACTGATGGATTGTTATTGGC AAAGAGACAATGCGCTGCTTTGTACACCAGAGTTCAGTTTCCTGTTCCACAGCTACC AATCTTGTCGTTTAACTGATATGAGGTGATTCCTGAATATAGTCTGGAGAAGTAATGCTCTGCAAGATGGGAATGCTTCTGTAAAGTGTAAACTTGTCGTCGGTGTTTTAACTGCC TTTTTTTATACCTTCAAGCCTCCAGGTTAGGCAACCCATGGAAGCATGAATTCTGACAAGAGCTGTAACTGTTGATTCTTATTTGATT TGTC AAGTTAGTCGATTGTTTGTTAGTTC AACTC AATGCTGCATGTATGATATGAGATATAC CTGCTAaaaaaaaa ]
[+] EMBL BQ907632 [ GACACGCACAGCTACCATCCGTCGTATGGATTAGCGCAAGCATCATTTCCA TTTGCCCCAGCGCAATGGGGTGTCACCCTATGGGTCAGGTGCACAGCCTCCGCAGTATGGAGCTGGGCAAGCAGCAACTAATCCTGGCAGTGCTTACCAAGCACCTCATGGACGTAAATAAATCGGCAAAAGTTGTCTACTGATGGATTGTTATTGGCAAAAGAGACAATGCGCTGCTTTGTACACCAGAGTTCAGTTTCCT TTCCACAGCTACCAAATCTTGTCGTTTAACTGATATGAGGTGATTCCTGAATATAGTCTGGAGAAGTAATGCTCTGCAAGATGGGAATGCTTCTGTAAAGTGTAAACTTGTCGTCGGTGTTTTAACTGCC TTTTTTTATACCTTCAAGCCTCCAGGTTAGGCAACCCATGGAAGCATGAATTCTGACAAGAGCTGTAACTGTTGATTCTTATTTGATT TGTCAAAGTTAGTCGATTGTTTGTTAGTTCAAAaaaaaaa ]
consensusID : consensus_13889#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 854 fasta sequence
[GCGGCCGAGGAGCAGGAGGCGAGGGGGATCCTCGACAAGGTCGCCAAGATGGAGGCCGACCTCAAGGCCCGCGACCCCGTCAAGGCCGAGCTGCAGCAGGCGCACGCCGAGGCGCAGGGCCTCGTCGTCGCGAGGCAGCAGCTGGCCGCCGACACGCAGAAGCTGAGCAAGGACCTGCAGAGGAACCTCGGCGAGGCGCAGCAGCTCCCCGCGCTCGTGGCCGAGCGCGACGCCGCTAGGCAGGAGTATCAGCACCTCAGGGCTACGTATGAGTACGAAAGGAAACTCAGGATGGATCACTCCGAGTCGCTGCAGGTGATGAAGAGGAATTATGACACCATGGTCGCTGAGCTAGACAAGCTTCGTGCTGAGCTGATGAACACGGCTAATATTGACAGAGGAGGTATGCTATACAATACTAATACTGCTCAAAAGGATGATGGCGCGCCTAGTCTTCCTGTTGGACAAATTGCTTATGATAGCGGT-TATGGAGCTGCGCAGGGAAGGACACCACCTGCTGGACTGGGAGACTCTTTAAGCGGAAACCCAGCTGGCACAGCTCCTCGGACTGGATTTGATCCATCAAGAGGCAATATGTATGACGCTTCTCGTATTGCTAGCTTCAGTTCTTCAAAAGCTGGAGGACATGATGCATCAAGGGGTGCCGCAGGCTACAATTCTTTGAAAGGTGCTGGATATGATCCTTCTAAAGCACCTGCACTTGGAGGACAGGCAACAGCTGCAGCTGCTCATGGGAGTAGTGCTGATTACTATGGATCAAATCAGGCAACACCACCTTCATATGCTTGGGGACAAGCTGCATCCGCTTATGGATCTGCACAAGTGCCACAGTC]
[+] EMBL CB642619 [GCGGCCGAGGAGCAGGAGGCGAGGGGGATCCTCGACAAGGTCGCCAAGATGGAGGCCGACCTCAAGGCCCGCGACCCCGTCAAGGCCGAGCTGCAGCAGGCGCACGCCGAGGCGCAGGGCCTCGTCGTCGCGAGGCAGCAGCTGGCCGCCGACACGCAGAAGCTGAGCAAGGACCTGCAGAGGAACCTCGGCGAGGCGCAGCAGCTCCCCGCGCTCGTGGCCGAGCGCGACGCCGCTAGGCAGGAGTATCAGCACCTCAGGGCTACGTATGAGTACGAAAGGAAACTCAGGATGGATCACTCCGAGTCGCTGCAGGTGATGAAGAGGAATTATGACACCATGGTCGCTGAGCTAGACAAGCTTCGTGCTGAGCTGATGAACACGGCTAATATTGACAGAGGAGGTATGCTATACAATACTAATACTGCTCAAAAGGATGATGGCGCGCCTAGTCTTCCTGTTGGACAAATTGCTTATGATAGCGGT TATGGAGCTGCGCAGGGAAGGACACCACCTGCTGGACTGGGAGACTCTTTAAGCGGAAACCCAGCTGGCACAGCTCCTCGGACTGGATTTGATCCATCAAGAGGCAATATGTATGACGCTTCTCGTATTGCTAGCTTCAGTTCTTCAAAAGCTGGAGGACATGATGCATCAAGGGGTGCCGCAGGCTACAATTCTTTGAAAGGTGCTGGATATGATCCTTCTAAAGCACCTGCACTTGGAGGACAGGCAACAGCTGCAGCTGCTCATGGGAGTAGTGCTGATTACTATGGATCAAATCAGGCAACACCACCTTCATATGCTTGGGGACAAGCTGCATCCGCTTATGGATCTGCACAAGTGCCACAGTC]
[+] EMBL CA999132 [ GCCTAGTCTTCCTGTTGGACAAATTGCTTATGATAGCGGTATATGGAGCTGCGCAGGGAAGGACACCACCTGCTGGACTGGGAGACTCTTTAAGCGGAAACCCAGCTGGCACAGCTCCTCGGACTGGATTTGATCCATCAAGAGGCGATATGTATGACGCTTCTCGGATTGCTAGCTTCACTTCTTCAAAAGCTGGA ]
consensusID : consensus_13889#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 741 fasta sequence
[GGATCTGCACAAGTGCCACAGTCACATGCATCTGGACCTCCTGTTCAATCAACATCCTACAGTGCAACAACAGCACGTAACTTTGGCTCTGCCCAGGCTTTACCATCATATGCACATGCACAGGAGCAACCTTCATATGGACACGCACAGCTACCATCCTCATATGGATTAGCGCAAGCATCATTTCCATTTGCCCCAGCGCAAGGGGTGTCACCCTATGGGTCAGGTGCACAGCCTCCGCAGTATGGAGCTGGGCAAGCAGCAACTAATCCTGGCAGTGCTTACCA-AGCACCTCATGGACGTAAATAAATCGGCAAAAGTTGTCTACTGATGGATTGTTATTGGCAAAAGAGACAATGCGCTGCTTTGTACACCAGAGTTCAGTTTCCT-TTCCACAGCTACCAAATCTTGTCGTTTAACTGATATGAGGTGATTCCTGAATATAGTCTGGAGAAGTAATGCTCTGCAAGATGGGAATGCTTCTGTAAAGTGTAAACTTGTCGTCGGTGTTTTAACTGCCTTTTTTTATACCTTCAAGCCTCCAGGTTAGGCAACCCATGGAAGCATGAATTCTGACAAGAGCTGTAACTGTTGATTCTTATTTGATTTGTCA-AAGTTAGTCGATTGTTTGTTAGTTCAAACTCAAATGCTGCATGTATGATATGAGATATACACTGCTAGTTCTGGGAGGTTAATAATAGGCCCGTGCTGGAGATTCTCAATGTTTAGGGGCCTTAAAAG]
[-] EMBL CB642620 [GGATCTGCACAAGTGCCACAGTCACATGCATCTGGACCTCCTGTTCAATCAACATCCTACAGTGCAACAACAGCACGTAACTTTGGCTCTGCCCAGGCTTTACCATCATATGCACATGCACAGGAGCAACCTTCATATGGACACGCACAGCTACCATCCTCATATGGATTAGCGCAAGCATCATTTCCATTTGCCCCAGCGCAAGGGGTGTCACCCTATGGGTCAGGTGCACAGCCTCCGCAGTATGGAGCTGGGCAAGCAGCAACTAATCCTGGCAGTGCTTACCA AGCACCTCATGGACGTAAATAAATCGGCAAAAGTTGTCTACTGATGGATTGTTATTGGCAAAAGAGACAATGCGCTGCTTTGTACACCAGAGTTCAGTTTCCT TTCCACAGCTACCAAATCTTGTCGTTTAACTGATATGAGGTGATTCCTGAATATAGTCTGGAGAAGTAATGCTCTGCAAGATGGGAATGCTTCTGTAAAGTGTAAACTTGTCGTCGGTGTTTTAACTGCCTTTTTTTATACCTTCAAGCCTCCAGGTTAGGCAACCCATGGAAGCATGAATTCTGACAAGAGCTGTAACTGTTGATTCTTATTTGATTTGTCA AAGTTAGTCGATTGTTTGTTAGTTCAAACTCAAATGCTGCATGTATGATATGAGATATACACTGCTAGTTCTGGGAGGTTAATAATAGGCCCGTGCTGGAGATTCTCAATGTTTAGGGGCCTTAAAAG]
[+] EMBL BI812979 [ ctGGCAAGCAGCAACTAATCCT GCAGGGCTTACCACAGCACCTCATGGACGTAAATAAATCGCCAAA TTGTCTACTGATGGATTGTTATTGCCCAAAGAGACCATGCGCTGCTTTGTACCCCCGAGTTCAGTTTCCTGTTCCACAGCTACCCAATCTTGTCGTTTAACTGATATGAGGTGATTCCTGAATATAGTCTGGAGAAGTAATGCTCTGCAAGATGGGAATGCTTCTGTAAAGTGTAAACTTGTCGTCGGTGTTTTAACTGCCTTTTTTTATACCTTCAAGCCTCCCGGTTAGGCAACCCCTGGAAGCCTGAATTCTGACCAGAGCTGTAACTGTTGATTCTTATTTGATTTGTCACAAGTTAGTCGATTGTTTGTTAGTTCCAACTCCAATGCTGCATGTATGATATGAGATATACCCTGCTAGTTCTGGGAGGTTAAAAAaaaaa ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13889#0 ATCCGAAGCCGTCTTCCTCCTCCCCCCACGCCGGCGACGACGACCAACCCTAGACCCGCC 60
consensus_13889#1 ------------------------------------------------------------
consensus_13889#2 ------------------------------------------------------------
consensus_13889#0 GCCTCCTCCGCCGCCGCCGCCGCCGCCGGCCACCGCGAGAGGTAACGACCTCTCCTCCCG 120
consensus_13889#1 ------------------------------------------------------------
consensus_13889#2 ------------------------------------------------------------
consensus_13889#0 CATCTCCCCCTCCCTCTCCTTCCCACCATGGGGAGCAAGGGGAGGGCGCCGCCGCCTTAC 180
consensus_13889#1 ------------------------------------------------------------
consensus_13889#2 ------------------------------------------------------------
consensus_13889#0 CACCACCGGGGGGCGCACAAGATGATGCACCGGGACCCGTACGGGGGGGCACCGGGGATG 240
consensus_13889#1 ------------------------------------------------------------
consensus_13889#2 ------------------------------------------------------------
consensus_13889#0 CCGGGGCCGTTCCCGTACGACATGCTGGCGGCGGCGGCGCCGCCGCCGGAGATCCTGGAG 300
consensus_13889#1 ------------------------------------------------------------
consensus_13889#2 ------------------------------------------------------------
consensus_13889#0 CAGAAGCTGATGGCGCAGCGGGGGGAGCTGCAGAAGCTGGCGGTGGAGAACGACCGGCTG 360
consensus_13889#1 ------------------------------------------------------------
consensus_13889#2 ------------------------------------------------------------
consensus_13889#0 GCGATGAGCCACGACTCGCTGCGGAAGGAGCTCGCCGCGGCGCAGCAGGAGGCGCAGAGG 420
consensus_13889#1 ------------------------------------------------------------
consensus_13889#2 ------------------------------------------------------------
consensus_13889#0 CTGCAGGCGCAGGGGCAGGCGGCGATGGCGGCCGAGGAGCAGGAGGCGAGGGGGATCCTC 480
consensus_13889#1 ---------------------------GCGGCCGAGGAGCAGGAGGCGAGGGGGATCCTC 33
consensus_13889#2 ------------------------------------------------------------
consensus_13889#0 GACAAGGTCGCCAAGATGGAGGCCGACCTCAAGGCCCGCGACCCCGTCAAGGCCGAGCTG 540
consensus_13889#1 GACAAGGTCGCCAAGATGGAGGCCGACCTCAAGGCCCGCGACCCCGTCAAGGCCGAGCTG 93
consensus_13889#2 -------------------------------GGATCTGCACAAGTGCCACAGTC-ACATG 28
* * ** * ** * * * **
consensus_13889#0 CAGCAGGCGCACGCCGAGGCGCAGGGCCTCGTCGTCGCGAGGCAGCAGCTGGCCGCCGAC 600
consensus_13889#1 CAGCAGGCGCACGCCGAGGCGCAGGGCCTCGTCGTCGCGAGGCAGCAGCTGGCCGCCGAC 153
consensus_13889#2 CATCTGGACCTCCTGTTCAATCAACATCCTACAGTGCAACAACAGCACGTAACTTTGGCT 88
** * ** * * ** * ** ***** * * *
consensus_13889#0 ACGCAGAAGCTGAGCAAGGACCTGCAGAGGAACCTCGGCGAGGCGCAGCAGCTCCCCGCG 660
consensus_13889#1 ACGCAGAAGCTGAGCAAGGACCTGCAGAGGAACCTCGGCGAGGCGCAGCAGCTCCCCGCG 213
consensus_13889#2 CTGCCCAGGCTTTACCATCATATGCACATGCAC-------AGGAGCAAC--CTTCATATG 139
** * *** * * * **** * * ** *** *** * ** * *
consensus_13889#0 CTCGTGGCCGAGCGCGACGCCGCTAGGCAGGGGTATCAGCACCTCAGGGCTACGTATGAG 720
consensus_13889#1 CTCGTGGCCGAGCGCGACGCCGCTAGGCAGGAGTATCAGCACCTCAGGGCTACGTATGAG 273
consensus_13889#2 GACACGCACAGCTACCATCCTCATATGGATTAGCGCAAGCATCATTTCCATTTGCCCCAG 199
* * * * * * ** * * * **** * * * **
consensus_13889#0 TACGAAAGGAAACTCAGGATGGATCA--CTCCGAGTCGCTGCAG-GTGATGAAGAGGAAT 777
consensus_13889#1 TACGAAAGGAAACTCAGGATGGATCA--CTCCGAGTCGCTGCAG-GTGATGAAGAGGAAT 330
consensus_13889#2 CGCAAGGGGTGTCACCCTATGGGTCAGGTGCACAGCCTCCGCAGTATGGAGCTGGGCAAG 259
* * ** * * **** *** * ** * * **** ** * * * **
consensus_13889#0 TATGACACCATGGTCGCTGAGCTAGACAAGCTTCGTGCTGAGCTGATGAACACGGCTAAT 837
consensus_13889#1 TATGACACCATGGTCGCTGAGCTAGACAAGCTTCGTGCTGAGCTGATGAACACGGCTAAT 390
consensus_13889#2 CAGCAACTAATCCTGGCAGTGCTTACCAAGC---------ACCTCATGGACGTAAATAA- 309
* * ** * ** * *** ***** * ** *** ** ***
consensus_13889#0 ATTGACAGAGGAGGCATGCCGTTTATCTGTTGTTCCATTTTTTTTACCACAATTTTTGGG 897
consensus_13889#1 ATTGACAGAGGAGG---------------------------------------------- 404
consensus_13889#2 ATCGGCAAAAGTTG---------------------------------------------- 323
** * ** * * *
consensus_13889#0 TAGCATATATAGAAACCACACCATGAGACATTTTCTATGTGTAGGTATGCTATACAATAC 957
consensus_13889#1 ---------------------------------------------TATGCTATACAATAC 419
consensus_13889#2 ---------------------------------------------TCTACTGATGGAT-- 336
* * ** **
consensus_13889#0 TAATACTGCTCAAAAGGATGATGGCGCGCCTAGTCTTCCTGTTGGACAAATTGCTTATGA 1017
consensus_13889#1 TAATACTGCTCAAAAGGATGATGGCGCGCCTAGTCTTCCTGTTGGACAAATTGCTTATGA 479
consensus_13889#2 TGTTATTGGCAAAAGAGACAATGCGCTGCTTTGTACACCAGA-GTTCAGTTTCCTTTCCA 395
* ** ** *** ** *** ** * ** ** * * ** ** *** *
consensus_13889#0 TAGTGGTTATGGAGCTGCGCAGGGAAGGACACCACCTGCTGGACTGGGAGACTCTTTAAG 1077
consensus_13889#1 TAGCGGTTATGGAGCTGCGCAGGGAAGGACACCACCTGCTGGACTGGGAGACTCTTTAAG 539
consensus_13889#2 CAGC---TACCAAATCTTGTCGTTTAA-----------CTGATATGAGGTGATTCCTGAA 441
** ** * * * * *** ** * * * *
consensus_13889#0 CGGAAACCCAGCTGGCACAGCTCCTCGGACTGGATTTGATCCATCAAGAGGCAATATGTA 1137
consensus_13889#1 CGGAAACCCAGCTGGCACAGCTCCTCGGACTGGATTTGATCCATCAAGAGGCAATATGTA 599
consensus_13889#2 TATAGTCTGGAGAAGTAATGCTCTGCAAGATGGGAATGCTTCTGTAAAGTGTAAACTTGT 501
* * * * **** * *** ** * * ** * ** *
consensus_13889#0 TGACGCTTCTCGTATTGCTAGCTTCAGTTCTTCAAAAGCTGGAGGACATGATGCATCAAG 1197
consensus_13889#1 TGACGCTTCTCGTATTGCTAGCTTCAGTTCTTCAAAAGCTGGAGGACATGATGCATCAAG 659
consensus_13889#2 CGTCGGTGTTTTAACTGCCTTTTTTTATACCTTCAAGCCTCCAGG---TTAGGCAACCCA 558
* ** * * * *** ** * * * ** ** *** * * *** *
consensus_13889#0 GGGTGCCGCAGGCTACAATTCTTTGAAAGGTGCTGGATATGATCCTTCTAAAGCACCTGC 1257
consensus_13889#1 GGGTGCCGCAGGCTACAATTCTTTGAAAGGTGCTGGATATGATCCTTCTAAAGCACCTGC 719
consensus_13889#2 TGG------AAGCATGAATTC--TGACAAGAGCTGTAACTGTTGATTCTTATTTGATT-- 608
** * ** ***** *** * * **** * ** * **** * *
consensus_13889#0 ACTTGGAGGACAGGCAACAGCTGCAGCTGCTCATGGGAGTAGTGCTGATTACTATGGATC 1317
consensus_13889#1 ACTTGGAGGACAGGCAACAGCTGCAGCTGCTCATGGGAGTAGTGCTGATTACTATGGATC 779
consensus_13889#2 -TGTCAAAGTTAGTCGATTGTTT--GTTAGTTCAAACTCAAATGCTGCATG-TATGATAT 664
* * * ** * * * * * * * * ***** * ****
consensus_13889#0 AAATCAGGCAACACCACCTTCATATGCTTGGGGACAAGC---TGCATCCGCTTATGGATC 1374
consensus_13889#1 AAATCAGGCAACACCACCTTCATATGCTTGGGGACAAGC---TGCATCCGCTTATGGATC 836
consensus_13889#2 GAGATATACACTGCTAGTTCTGGGAGGTTAATAATAGGCCCGTGCTGGAGATTCTCAATG 724
* * ** * * * * ** * * ** *** * ** * **
consensus_13889#0 TGCACAAGTGCCACAGTCACATGCATCTGGACCTCCTGTTCAATCAACATCCTACAGTGC 1434
consensus_13889#1 TGCACAAGTGCCACAGTC------------------------------------------ 854
consensus_13889#2 TTTAGGGGCCTTAAAAG------------------------------------------- 741
* * * * *
consensus_13889#0 AACAACAGCACGTAACTTTGGCTCTGCCCAGGCTTTACCATCATATGCACATGCACAGGA 1494
consensus_13889#1 ------------------------------------------------------------
consensus_13889#2 ------------------------------------------------------------
consensus_13889#0 GCAACCTTCATATGGACACGCACAGCTACCATCCTCGTATGGATTAGCGCAAGCATCATT 1554
consensus_13889#1 ------------------------------------------------------------
consensus_13889#2 ------------------------------------------------------------
consensus_13889#0 TCCATTTGCCCCAGCGCAAGGGGTGTCACCCTATGGGTCAGGTGCACAGCCTCCGCAGTA 1614
consensus_13889#1 ------------------------------------------------------------
consensus_13889#2 ------------------------------------------------------------
consensus_13889#0 TGGAGCTGGGCAAGCAGCAACTAATCCTGGCAGTGCTTACCAAGCACCTCATGGACGTAA 1674
consensus_13889#1 ------------------------------------------------------------
consensus_13889#2 ------------------------------------------------------------
consensus_13889#0 ATAAATCGGCAAAAGTTGTCTACTGATGGATTGTTATTGGCAAAAGAGACAATGCGCTGC 1734
consensus_13889#1 ------------------------------------------------------------
consensus_13889#2 ------------------------------------------------------------
consensus_13889#0 TTTGTACACCAGAGTTCAGTTTCCTTTCCACAGCTACCAAATCTTGTCGTTTAACTGATA 1794
consensus_13889#1 ------------------------------------------------------------
consensus_13889#2 ------------------------------------------------------------
consensus_13889#0 TGAGGTGATTCCTGAATATAGTCTGGAGAAGTAATGCTCTGCAAGATGGGAATGCTTCTG 1854
consensus_13889#1 ------------------------------------------------------------
consensus_13889#2 ------------------------------------------------------------
consensus_13889#0 TAAAGTGTAAACTTGTCGTCGGTGTTTTAACTGCCTTTTTTTATACCTTCAAGCCTCCAG 1914
consensus_13889#1 ------------------------------------------------------------
consensus_13889#2 ------------------------------------------------------------
consensus_13889#0 GTTAGGCAACCCATGGAAGCATGAATTCTGACAAGAGCTGTAACTGTTGATTCTTATTTG 1974
consensus_13889#1 ------------------------------------------------------------
consensus_13889#2 ------------------------------------------------------------
consensus_13889#0 ATTTGTCAAAGTTAGTCGATTGTTTGTTAGTTCAAACTCAAATGCTGCATGTATGATATG 2034
consensus_13889#1 ------------------------------------------------------------
consensus_13889#2 ------------------------------------------------------------
consensus_13889#0 AGATATACACTGCTAGTTCTGGGAGGTTAATAATATGCCCGTGCTGGAGATTCTCAATGT 2094
consensus_13889#1 ------------------------------------------------------------
consensus_13889#2 ------------------------------------------------------------
consensus_13889#0 TTATCATGCATGCATTCGTTCTGTTTATCCTGTAAATGCGCATGCCCAGGATGCATACAT 2154
consensus_13889#1 ------------------------------------------------------------
consensus_13889#2 ------------------------------------------------------------
consensus_13889#0 CCGACATT 2162
consensus_13889#1 --------
consensus_13889#2 --------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||