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Oryza sativa
cluster # 13896 cluster # 13896       Sequences # 14       consensus # 6


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_13896#0 length = 1535 sequences # 9  
consensus_13896#1 length = 517 sequences # 1  
consensus_13896#2 length = 330 sequences # 1  
consensus_13896#3 length = 321 sequences # 1  
consensus_13896#4 length = 243 sequences # 1  
consensus_13896#5 length = 211 sequences # 1  

consensusID : consensus_13896#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 9
consensus length = 1535
fasta sequence
                              [CCCTTCACACGCGGCGGTTGACGTCTCCGACGCCGGCGATCTCCTCCGCCCCCTCCCCTCCCCCGCCGCCGCCGCCGACCCTCCTCAGCTCGGCCGCCACCTCCTCCGCCAGAGGGAGAGCCCCCTCCACCTCGGCTCCTGCTCCTCCAACGCCGCCATGAATTACATCATCGGAGCATTCAAGGCGCCCTGCGACGTCTTCATCACCTTCGCCGATGAGAGGAGCCGGAAGCAGGTGGCGATCAAGAAGGATAACGGGAAGACGTTGATGGTGCCGGCCTTCCAGAGCCTGGAGACTATTGCAGGAGAGGTGTCGGTAGCGCCCGTTCCAGGTAAAAGGGTGGAGCACCAAGGTGTCAAGATTGAGCTGCTGGGTCAGATAGAGCTGTACCATGAGAGAGGTCACTTCTATGACTTCACTTCGTTAGTGCGAGAGTTAGAGGTTGCTGGTGAAATCTATGAAAGGAAGACTTATCCATTTGAATTCTCTACTGTTGAGATGCCTTATGAGTCGTATAACGGAACAAATGTCAGATTGAGGTACATCCTGAAAGTTACAATTGGCAGACCATATGCTACTAGTGTTGTGGAATGTCGAGATTTCTGTGTAAGGAATTACACTCCTCTTCCTTCAATTAACAATAGCATCAAGATGGAAGTTGGAATTGAAGATTGTTTGCATATTGAA-TTTGAGTACAGCAAAAGCAAGTACCATCTCAAGGATGTGATCGTGGGAAAAATCTATTTTCTTCTAGTCAGAATAAAGATAAAGAACATGGAGCTTGAGATTCGTCGGCGGGAATCAACAGGATCTGGGCCTGGCACATATATTGAGACTGAGACACTTGCAAAGTTTGAGTTGATGGATGGCGCTCCCGTAAGAGGTGAGTCTATTCCGGTAAGACTCTTCTTGACACCATATGAGTTGACCCCGACTTACCGCAACATAAACAACAAGTTCAATGTCAAGTACTACCTGAACCTGGTTCTTGTTGACGAGGAAGA-C-CGGAGGTACTTCAAGCAG-CAAGAGATCACAATGTACC-GCCTTCAAGAAACTCCGCAATCTTCATAAACTCCTGTTG-CCTTGACTTGGTAACGACCAGAAAAACTT-GGGTCTGTCTGGCATAGGAGAGCACCGGAGTAGCAACTTAGCATGATGCGCCTTCCTGTATATAACTCTCCAGAGGAGCGATGCCCTTTGTGATGTACCGTGTACTGTTTTTGCCTATGCTCTTTTCCCCCCCATTTTCTCCTTCATTCTGATCAGGAAACAAACCATGACAACGCTGGCATT-GTTGCCCTTTTCGCCTTGTTCATTTGAGCTTTCTTG-TTAGACTTTGTGGGATAACCATATATTTGTTGATATTTTGCTTCATTGTTTTACCCTTTAATAAGTTCAGTTGAACCCGATATGGTCTCCAAGTCGATGTACTGCTGGCTGCATGTTGATTTTGTACCAAAGCAAGAAATCTGAACAAACTCTGATTGGAAACAGTATGAACAAACAACACTGGAATGTAACTGTTTGCGTGTGA]

[+] EMBL AK065196             [CCCTTCACACGCGGCGGTTGACGTCTCCGACGCCGGCGATCTCCTCCGCCCCCTCCCCTCCCCCGCCGCCGCCGCCGACCCTCCTCAGCTCGGCCGCCACCTCCTCCGCCAGAGGGAGAGCCCCCTCCACCTCGGCTCCTGCTCCTCCAACGCCGCCATGAATTACATCATCGGAGCATTCAAGGCGCCCTGCGACGTCTTCATCACCTTCGCCGATGAGAGGAGCCGGAAGCAGGTGGCGATCAAGAAGGATAACGGGAAGACGTTGATGGTGCCGGCCTTCCAGAGCCTGGAGACTATTGCAGGAGAGGTGTCGGTAGCGCCCGTTCCAGGTAAAAGGGTGGAGCACCAAGGTGTCAAGATTGAGCTGCTGGGTCAGATAGAGCTGTACCATGAGAGAGGTCACTTCTATGACTTCACTTCGTTAGTGCGAGAGTTAGAGGTTGCTGGTGAAATCTATGAAAGGAAGACTTATCCATTTGAATTCTCTACTGTTGAGATGCCTTATGAGTCGTATAACGGAACAAATGTCAGATTGAGGTACATCCTGAAAGTTACAATTGGCAGACCATATGCTACTAGTGTTGTGGAATGTCGAGATTTCTGTGTAAGGAATTACACTCCTCTTCCTTCAATTAACAATAGCATCAAGATGGAAGTTGGAATTGAAGATTGTTTGCATATTGAA TTTGAGTACAGCAAAAGCAAGTACCATCTCAAGGATGTGATCGTGGGAAAAATCTATTTTCTTCTAGTCAGAATAAAGATAAAGAACATGGAGCTTGAGATTCGTCGGCGGGAATCAACAGGATCTGGGCCTGGCACATATATTGAGACTGAGACACTTGCAAAGTTTGAGTTGATGGATGGCGCTCCCGTAAGAGGTGAGTCTATTCCGGTAAGACTCTTCTTGACACCATATGAGTTGACCCCGACTTACCGCAACATAAACAACAAGTTCAATGTCAAGTACTACCTGAACCTGGTTCTTGTTGACGAGGAAGA C CGGAGGTACTTCAAGCAG CAAGAGATCACAATGTACC GCCTTCAAGAAACTCCGCAATCTTCATAAACTCCTGTTG CCTTGACTTGGTAACGACCAGAAAAACTT GGGTCTGTCTGGCATAGGAGAGCACCGGAGTAGCAACTTAGCATGATGCGCCTTCCTGTATATAACTCTCCAGAGGAGCGATGCCCTTTGTGATGTACCGTGTACTGTTTTTGCCTATGCTCTTTTCCCCCCCATTTTCTCCTTCATTCTGATCAGGAAACAAACCATGACAACGCTGGCATT GTCGCCCTTTTCGCCTTGTTCATTTGAGCTTTCTTG TTAGACTTTGTGGGATAACCATATATTTGTTGATATTTTGCTTCATTGT                                                                                                                                                            ]
[+] EMBL CF323213             [                                                                                       GCTCGGCCGCCACCTCCTCCGCCAGAGGGAGAGCCCCCTCCACCTCGGCTCCTGCTCCTCCAACGCCGCCATGAATTACATCATCGGAGCATTCAAGGCGCCCTGCGACGTCTTCATCACCTTCGCCGATGAGAGGAGCCGGAAGCAGGTGGCGATCAAGAAGGATAACGGGAAGACGTTGATGGTGCCGGCCTTCCAGAGCCTGGAGACTATTGCAGGAGAGGTGTCGGTAGCGCCCGTTCCAGGTAAAAGGGTGGAGCACCAAGGTGTCAAGATTGAGCTGCTGGGTCAGATAGAGCTGTACCATGAGAGAGGTCACTTCTATGACTTCACTTCGTTAGTGCGAGAGTTAGAGGTTGCTGGTGAAATCTATGAAAGGAAGACTTATCCATTTGAATTCTCTACTGTTGAGATGCCTTATGAGTCGTATAACGGAACAAATGTCAGATTGAGGTACATCCTGAAAGTTACAATTGGCAGACCATATGCTACTAGTGTTGTGGAATGTCGAGATTTCTGTGTAAGGAATTACACTCCTCTTCCTTCAATTAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CA999301             [                                                                                                                                                                                                                                                                                                                                       TCCAGGTAAAAGGGTGGAGCACCAAGGTGTCAAGATTGAGCTGCTGGGTCAGATAGAGCTGTACCATGAGAGAGGTCACTTCTATGACTTCACTTCGTTAGTGCGAGAGTTAGAGGTTGCTGGTGAAATCTATGAAAGGAAGACTTATCCATTTGAATTCTCTACTGTTGAGATGCCTTATGAGTCGTATAACGGAACAAATGTCAGATTGAGGTACATCCTGAAAGTTACGATTGGCAGACCATATGCTACTAGTGTTGTGGAATGTCGAGATTTCTGTGTAAGGAATTACACTCCTCTTCCTTCAATTAACAATAGCATCAAGATGGAAGTTGGAATTGAAGATTGTTTGCATATTGAATTTTGAGTACAGCAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CA998160             [                                                                                                                                                                                                                                                                                                                                       TCCAGGTAAAAGGGTGGAGCACCAAGGTGTCAAGATTGAGCTGCTGGGTCAGATAGAGCTGTACCATGAGAGAGGTCACTTCTATGACTTCACTTCGTTAGTGCGAGAGTTAGAGGTTGCTGGTGAAATCTATGAAAGGAAGACTTATCCATTTGAATTCTCTACTGTTGAGATGCCTTATGAGTCGTATAACGGAACAAATGTCAGATTGAGGTACATCCTGAAAGTTACGATTGGCAGACCATATGCTACTAGTGTTGTGGAATGTCGAGATTTCTGTGTAAGGAATTACACTCCTCTTCCTTCAATTAACAATAGCATCAAGATGGAAGTTGGAATTGAAGATTGTTTGCATATTGAA TTTGAGTACAGCAAAAGCAAGTACCATCTCAAGGATGTGATCGTGGGAAAAATCTATTTTCTTCTAGTCAGAATAAAGATAAAGAACATGGAGCTTGAGATTCGTCGGCGGGAATCAACAGGATCTGGGCCTGGCACATATATTGAGACTGAGACACTTGCAAAGTTTGAGTTGATGGATGGCGCTCCCGTAAGAGGTGAGTCTATTCCGGTAAGACTCTTCTTGACACCATATGAGTTGACCCCGACTTACCGCAACATAAACAACAAGTTCAATGTCAAGTACTACCTGAACCTGGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL CA999907             [                                                                                                                                                                                                                                                                                                                                       TCCAGGTAAAAGGGTGGAGCACCAAGGTGTCAAGATTGAGCTGCTGGGTCAGATAGAGCTGTACCATGAGAGAGGTCACTTCTATGACTTCACTTCGTTAGTGCGAGAGTTAGAGGTTGCTGGTGAAATCTATGAAAGGAAGACTTATCCATTTGAATTCTCTACTGTTGAGATGCCTTATGAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CF314172             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             acCATCCTGAAAGTTACAATTGGCAGACCATATGCTACTAGTGTTGTGGAATGTCGAGATTTCTGTGTAAGGAATTACACTCCTCTTCCTTCAATTAACAATAGCATCAAGATGGAAGTTGGAATTGAAGATTGTTTGCATATTGAA TTTGAGTACAGCAAAAGCAAGTACCATCTCAAGGATGTGATCGTGGGAAAAATCTATTTTCTTCTAGTCAGAATAAAGATAAAGAACATGGAGCTTGAGATTCGTCGGCGGGAATCAACAGGATCTGGGCCTGGCACATATATTGAGACTGAGACACTTGCAAAGTTTGAGTTGATGGATGGCGCTCCCGTAAGAGGTGAGTCTATTCCGGTAAGACTCTTCTTGACACCATATGAGTTGACCCCGACTTACCGCAACATAAACAACAAGTTCAATGTCAAGTACTACCTGAACCTGGTTCTTGTTGACGAGGAA A CNCGGAGGTACTTCAAGCAG CAAGAGATCACAATGTACC GCCTTCAAGAAACTCCGCAATCCTCATAAACTCCTGTTA CCTTGACTTGGTAACGACCAG AAAACTTGGGGTCTGTCTGGCATAGGAGAGCACCGGAGTAGCAACTTAGCATGATGCGCCTTCCTGT                                                                                                                                                                                                                                                                                                                                                                               ]
[-] EMBL CB654773             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    AGTACCATCTCAAGGATGTGATCGTGGGAAAAATCTATTTTCTTCTAGTCAGAATAAAGATAAAGAACATGGAGCTTGAGATTCGTCGGCGGGAATCAACAGGATCTGGGCCTGGCACATATATTGAGACTGAGACACTTGCAAAGTTTGAGTTGATGGATGGCGCTCCCGTAAGAGGTGAGTCTATTCCGGTAAGACTCTTCTTGACACCATATGAGTTGACCCCGACTTACCGCAACATAAACAACAAGTTCAATGTCAAGTACTACCTGAACCTGGTTCTTGTTGACGAGGAAGA C CGGAGGTACTTCAAGCAG CAAGAGATCACAATGTACC GCCTTCAAGAAACTCCGCAATCTTCATAAACTCCTGTTG CCTTGACTTGGTAACGACCAGAAAAACTT GGGTCTGTCTGGCATAGGAGAGCACCGGAGTAGCAACTTAGCATGATGCGCCTTCCTGTATATAACTCTCCAGAGGAGCGATGCCCTTTGTGATGTACCGTGTACTGTTTTTGCCTATGCTCTTTTCCCCCCCATTTTCTCCTTCATTCTGATCAGGAAACAAACCATGACAACGCTGGCATT GTTGCCCTTTTCGCCTTGTTCATTTGAGCTTTCTTG TTAGACTTTGTGGGATAACCATATATTTGTTGATATTTTGCTTCATTGTTTTACCCTTTAATAAGTTCAGTTGAACCCGATATGGTCTCCAAGTCGATGTACTGCTGGCTGCATGTTGATTTTGTACCAAAGCAAGAAATCTGAACAAACTCTGATTGGAAACAGTATGAA                                  ]
[+] EMBL BQ907960             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         AACAAGTTCAATGTCAAGTACTACCTGAACCTGGTTCTTGTTGACGAGGAAGACC CGGAGGTACTTCAAGCAGCCAAGAGATCACAATGTACCNCCCTTCAAGAAACTCCNCAATCTTCATAAACTCCTGTTGCCCTTGACTTGGTAACGACCAGAAAAACTT GGGTCTTTCTGGCATAGGAGAGCACCGGAGTAGCAACTTAGCATGATGCGCCTTCCTGTATATAACTCTCCAGAGGAGCGATGCCCTTTGTGATGTACCGTGTACTGTTTTTGCCTATGCTATTTTCCCCCCCATTTTCTCCTTCAGTCTGATCAGGAANCCAACCATGACAACGCTGGCATTCGTTGCCCTTTTCCCCTTGTTCATTTGAGCTTTCTTGTTTAGACTTTGTGGGATAACCATATA TTGTTGATATTTTGCTTCAaaaaaaaaa                                                                                                                                                       ]
[+] EMBL CA764789             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               C CGGAGGTACTTCAAGCAG CAAGAGATCACAATGTACC GCCTTCAAGAAACTCCGCAATCTTCATAAACTCCTGTTG CCTTGACTTGGTAACGACCAGAAAAACTT GGGTCTTTCTGGCATAGGAGAGCACCGGAGTAGCAACTTAGCATGATGCGCCTTCCTGTATATAACTCTCCAGAGGAGCGATGCCCTTTGTGATGTACCGTGTACTGTTTTTGCCTATGCTATTTCCCCCCCCATCTTCTCCTTCAGTCTGATCAGGAAACAAACCATGACAACGCTGGCATT GTTGCCCTTTTCGCCTTGTTCATTTGAGCTTTCTTG TTAGACTTTGTGGGATAACCATATATTTGTTGATATTTTGCTTCATTGTTTTACCCTTTAATAAGTTCAGTTGAACCCGATATGGTCTCCAAGTCGATGTACTGCTGGCTGCATGTTGATTTTGTACCAAAGCAAGAAATCTGAACAAACTCTGATTGGAAACAGTATGAACAAACAACACTGGAATGTAACTGTTTGCGTGTGA]


>consensus_13896#0 CCCTTCACACGCGGCGGTTGACGTCTCCGACGCCGGCGATCTCCTCCGCCCCCTCCCCTC CCCCGCCGCCGCCGCCGACCCTCCTCAGCTCGGCCGCCACCTCCTCCGCCAGAGGGAGAG CCCCCTCCACCTCGGCTCCTGCTCCTCCAACGCCGCCATGAATTACATCATCGGAGCATT CAAGGCGCCCTGCGACGTCTTCATCACCTTCGCCGATGAGAGGAGCCGGAAGCAGGTGGC GATCAAGAAGGATAACGGGAAGACGTTGATGGTGCCGGCCTTCCAGAGCCTGGAGACTAT TGCAGGAGAGGTGTCGGTAGCGCCCGTTCCAGGTAAAAGGGTGGAGCACCAAGGTGTCAA GATTGAGCTGCTGGGTCAGATAGAGCTGTACCATGAGAGAGGTCACTTCTATGACTTCAC TTCGTTAGTGCGAGAGTTAGAGGTTGCTGGTGAAATCTATGAAAGGAAGACTTATCCATT TGAATTCTCTACTGTTGAGATGCCTTATGAGTCGTATAACGGAACAAATGTCAGATTGAG GTACATCCTGAAAGTTACAATTGGCAGACCATATGCTACTAGTGTTGTGGAATGTCGAGA TTTCTGTGTAAGGAATTACACTCCTCTTCCTTCAATTAACAATAGCATCAAGATGGAAGT TGGAATTGAAGATTGTTTGCATATTGAATTTGAGTACAGCAAAAGCAAGTACCATCTCAA GGATGTGATCGTGGGAAAAATCTATTTTCTTCTAGTCAGAATAAAGATAAAGAACATGGA GCTTGAGATTCGTCGGCGGGAATCAACAGGATCTGGGCCTGGCACATATATTGAGACTGA GACACTTGCAAAGTTTGAGTTGATGGATGGCGCTCCCGTAAGAGGTGAGTCTATTCCGGT AAGACTCTTCTTGACACCATATGAGTTGACCCCGACTTACCGCAACATAAACAACAAGTT CAATGTCAAGTACTACCTGAACCTGGTTCTTGTTGACGAGGAAGACCGGAGGTACTTCAA GCAGCAAGAGATCACAATGTACCGCCTTCAAGAAACTCCGCAATCTTCATAAACTCCTGT TGCCTTGACTTGGTAACGACCAGAAAAACTTGGGTCTGTCTGGCATAGGAGAGCACCGGA GTAGCAACTTAGCATGATGCGCCTTCCTGTATATAACTCTCCAGAGGAGCGATGCCCTTT GTGATGTACCGTGTACTGTTTTTGCCTATGCTCTTTTCCCCCCCATTTTCTCCTTCATTC TGATCAGGAAACAAACCATGACAACGCTGGCATTGTTGCCCTTTTCGCCTTGTTCATTTG AGCTTTCTTGTTAGACTTTGTGGGATAACCATATATTTGTTGATATTTTGCTTCATTGTT TTACCCTTTAATAAGTTCAGTTGAACCCGATATGGTCTCCAAGTCGATGTACTGCTGGCT GCATGTTGATTTTGTACCAAAGCAAGAAATCTGAACAAACTCTGATTGGAAACAGTATGA ACAAACAACACTGGAATGTAACTGTTTGCGTGTGA



consensusID : consensus_13896#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 517
fasta sequence
                              [AAAACTGGGTCTGTCTGGNCCATAGGGAGGAGCCCCCCGGANTNAGCAAACTTAGCATGGATGCNGCCCTCCCTGTAAAATAAACTCCTCCCAGGGGGAACCGATGCCCCCTTGGTGGATGTACCGTGGTAACTGTTTTTGGCCCTATGCTCTTTTCCCCCCCCCCATTTCTCCCTTCCATTCTGAATCCAGGAAAACAAACCATGAACAACGCTGGCCATTGTTNCCCCTTTTCGCCCTTGTTCCATTTGAGCTTTCTTGTTAGACTTTGTGGGATAACCATATATTTGTTGATATTTTGCTTCATTGTTTTACCCTTTAATAAGTTCAGTTGAACCCGATATGGTCTCCAAGTCGATGTACTGCTGGCTGCATGTTGATTTTGTACCAAAGCAAGAAATCTGAACAAACTCTNATTGGAAACAGTATGAACAAACAACACTGGAATGTAACTGTTTGCGTGTGAATGATAAAGTTAGCTATACTGTGTCCAAGTCAATTCAGAGAATAAAAAAAA]

[+] EMBL AU032012             [AAAACTGGGTCTGTCTGGNCCATAGGGAGGAGCCCCCCGGANTNAGCAAACTTAGCATGGATGCNGCCCTCCCTGTAAAATAAACTCCTCCCAGGGGGAACCGATGCCCCCTTGGTGGATGTACCGTGGTAACTGTTTTTGGCCCTATGCTCTTTTCCCCCCCCCCATTTCTCCCTTCCATTCTGAATCCAGGAAAACAAACCATGAACAACGCTGGCCATTGTTNCCCCTTTTCGCCCTTGTTCCATTTGAGCTTTCTTGTTAGACTTTGTGGGATAACCATATATTTGTTGATATTTTGCTTCATTGTTTTACCCTTTAATAAGTTCAGTTGAACCCGATATGGTCTCCAAGTCGATGTACTGCTGGCTGCATGTTGATTTTGTACCAAAGCAAGAAATCTGAACAAACTCTNATTGGAAACAGTATGAACAAACAACACTGGAATGTAACTGTTTGCGTGTGAATGATAAAGTTAGCTATACTGTGTCCAAGTCAATTCAGAGAATAAAAAAAA]


>consensus_13896#1 AAAACTGGGTCTGTCTGGNCCATAGGGAGGAGCCCCCCGGANTNAGCAAACTTAGCATGG ATGCNGCCCTCCCTGTAAAATAAACTCCTCCCAGGGGGAACCGATGCCCCCTTGGTGGAT GTACCGTGGTAACTGTTTTTGGCCCTATGCTCTTTTCCCCCCCCCCATTTCTCCCTTCCA TTCTGAATCCAGGAAAACAAACCATGAACAACGCTGGCCATTGTTNCCCCTTTTCGCCCT TGTTCCATTTGAGCTTTCTTGTTAGACTTTGTGGGATAACCATATATTTGTTGATATTTT GCTTCATTGTTTTACCCTTTAATAAGTTCAGTTGAACCCGATATGGTCTCCAAGTCGATG TACTGCTGGCTGCATGTTGATTTTGTACCAAAGCAAGAAATCTGAACAAACTCTNATTGG AAACAGTATGAACAAACAACACTGGAATGTAACTGTTTGCGTGTGAATGATAAAGTTAGC TATACTGTGTCCAAGTCAATTCAGAGAATAAAAAAAA



consensusID : consensus_13896#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 330
fasta sequence
                              [AGAGCCCCGGAGTAGCAACTTAGCATGATGGGCCTTCCTGTATATAACTTTCCAAAGGAGCGATGCCCTTTGTGATGTACCGTGGACTGTTTTTGCCTATGGTTTTTTCCCCCCCATTTTTTCCTTCATTTTGATCAGGAAACAAACCATGGCAACGGTGGCATTGTTGCCCTTTTTGCCTTGTTCATTTGAGGTTTTTTGTTAGACTTTGTGGGATAACCAAAAATTTGGTGAAATTTTGGTTCATTGTTTTACCCTTTAATAAGTTCAGTTGAACCCGATATGGTTTCCAAGTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[-] EMBL CF314173             [AGAGCCCCGGAGTAGCAACTTAGCATGATGGGCCTTCCTGTATATAACTTTCCAAAGGAGCGATGCCCTTTGTGATGTACCGTGGACTGTTTTTGCCTATGGTTTTTTCCCCCCCATTTTTTCCTTCATTTTGATCAGGAAACAAACCATGGCAACGGTGGCATTGTTGCCCTTTTTGCCTTGTTCATTTGAGGTTTTTTGTTAGACTTTGTGGGATAACCAAAAATTTGGTGAAATTTTGGTTCATTGTTTTACCCTTTAATAAGTTCAGTTGAACCCGATATGGTTTCCAAGTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_13896#2 AGAGCCCCGGAGTAGCAACTTAGCATGATGGGCCTTCCTGTATATAACTTTCCAAAGGAG CGATGCCCTTTGTGATGTACCGTGGACTGTTTTTGCCTATGGTTTTTTCCCCCCCATTTT TTCCTTCATTTTGATCAGGAAACAAACCATGGCAACGGTGGCATTGTTGCCCTTTTTGCC TTGTTCATTTGAGGTTTTTTGTTAGACTTTGTGGGATAACCAAAAATTTGGTGAAATTTT GGTTCATTGTTTTACCCTTTAATAAGTTCAGTTGAACCCGATATGGTTTCCAAGTTGAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA



consensusID : consensus_13896#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 321
fasta sequence
                              [GCGGCGGTTGACGTCTCCGACGCCGGCGATCTCCTCCGCCCCCTCCCCTCCCCCGCCGNCGACGNCGACCCTCCTCAGCTCGGCCGCCACCTCCTCCGCCAGAGGGAGAGCCCCCTNCACCTCGGATCCTGNTCCTCCAACGACGCATGNATTACATCATAGGAGCATTCAAGGCGCCCTGCGACGTCTTCATCACCTTCGNNGATGAGAGGAGACGNAAGCAGGTNGCGATCAAGAAGGATAACGGGAAGACGTTGATGGTGCAGNCCTTCCAGAGNCTNGAGACTATTNCAGGAGAAGTGTAGGTAGAGNCCNTTCCAG]

[+] EMBL OS1463A              [GCGGCGGTTGACGTCTCCGACGCCGGCGATCTCCTCCGCCCCCTCCCCTCCCCCGCCGNCGACGNCGACCCTCCTCAGCTCGGCCGCCACCTCCTCCGCCAGAGGGAGAGCCCCCTNCACCTCGGATCCTGNTCCTCCAACGACGCATGNATTACATCATAGGAGCATTCAAGGCGCCCTGCGACGTCTTCATCACCTTCGNNGATGAGAGGAGACGNAAGCAGGTNGCGATCAAGAAGGATAACGGGAAGACGTTGATGGTGCAGNCCTTCCAGAGNCTNGAGACTATTNCAGGAGAAGTGTAGGTAGAGNCCNTTCCAG]


>consensus_13896#3 GCGGCGGTTGACGTCTCCGACGCCGGCGATCTCCTCCGCCCCCTCCCCTCCCCCGCCGNC GACGNCGACCCTCCTCAGCTCGGCCGCCACCTCCTCCGCCAGAGGGAGAGCCCCCTNCAC CTCGGATCCTGNTCCTCCAACGACGCATGNATTACATCATAGGAGCATTCAAGGCGCCCT GCGACGTCTTCATCACCTTCGNNGATGAGAGGAGACGNAAGCAGGTNGCGATCAAGAAGG ATAACGGGAAGACGTTGATGGTGCAGNCCTTCCAGAGNCTNGAGACTATTNCAGGAGAAG TGTAGGTAGAGNCCNTTCCAG



consensusID : consensus_13896#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 243
fasta sequence
                              [GATCAGGAAACAAACCATGACAACGCTGGCATTGTTGCCCTTTTCGCCTTGTTCATTTGAGCTTTCTTGTTAGACTTTGTGGGATAACCATATATTTGTTGATATTTTGCTTCATTGTTTTACCCTTTAATAAGTTCAGTTGAACCCGATATGGTCTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANAAAAAAANAANANAANNAN]

[+] EMBL AU057976             [GATCAGGAAACAAACCATGACAACGCTGGCATTGTTGCCCTTTTCGCCTTGTTCATTTGAGCTTTCTTGTTAGACTTTGTGGGATAACCATATATTTGTTGATATTTTGCTTCATTGTTTTACCCTTTAATAAGTTCAGTTGAACCCGATATGGTCTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANAAAAAAANAANANAANNAN]


>consensus_13896#4 GATCAGGAAACAAACCATGACAACGCTGGCATTGTTGCCCTTTTCGCCTTGTTCATTTGA GCTTTCTTGTTAGACTTTGTGGGATAACCATATATTTGTTGATATTTTGCTTCATTGTTT TACCCTTTAATAAGTTCAGTTGAACCCGATATGGTCTCCAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANAAAAAAANAANANAAN NAN



consensusID : consensus_13896#5
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 211
fasta sequence
                              [CCGTTCAAGGCGCCCTGCGACGTCTTCATCACCTTCGCCGATGAGAGGAGCCGGAAGCAGGTGGCGATCAAGAAGGATAACGGGAAGACGTTGATGGTGCCGGCCTTCCCAGAGCCTGGAGACTATTGCAGGAGAGGTGTCGGTAGCGCCCGTTCCAGGTAAAAGGGTGGAGCACCAAGGTGTCAAGATTGAGCNTCTTGGNNAANTTAAA]

[+] EMBL OSR31371A            [CCGTTCAAGGCGCCCTGCGACGTCTTCATCACCTTCGCCGATGAGAGGAGCCGGAAGCAGGTGGCGATCAAGAAGGATAACGGGAAGACGTTGATGGTGCCGGCCTTCCCAGAGCCTGGAGACTATTGCAGGAGAGGTGTCGGTAGCGCCCGTTCCAGGTAAAAGGGTGGAGCACCAAGGTGTCAAGATTGAGCNTCTTGGNNAANTTAAA]


>consensus_13896#5 CCGTTCAAGGCGCCCTGCGACGTCTTCATCACCTTCGCCGATGAGAGGAGCCGGAAGCAG GTGGCGATCAAGAAGGATAACGGGAAGACGTTGATGGTGCCGGCCTTCCCAGAGCCTGGA GACTATTGCAGGAGAGGTGTCGGTAGCGCCCGTTCCAGGTAAAAGGGTGGAGCACCAAGG TGTCAAGATTGAGCNTCTTGGNNAANTTAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13896#2      ------------------------------------------------------------
consensus_13896#4      ------------------------------------------------------------
consensus_13896#1      ------------------------------------------------------------
consensus_13896#0      CCCTTCACACGCGGCGGTTGACGTCTCCGACGCCGGCGATCTCCTCCGCCCCCTCCCCTC 60
consensus_13896#3      ------------------------------------------------------------
consensus_13896#5      ------------------------------------------------------------
                                                                                   

consensus_13896#2      ------------------------------------------------------------
consensus_13896#4      ------------------------------------------------------------
consensus_13896#1      ------------------------------------------------------------
consensus_13896#0      CCCCGCCGCCGCCGCCGACCCTCCTCAGCTCGGCCGCCACCTCCTCCGCCAGAGGGAGAG 120
consensus_13896#3      ------------------------------------------------------------
consensus_13896#5      ------------------------------------------------------------
                                                                                   

consensus_13896#2      ------------------------------------------------------------
consensus_13896#4      ------------------------------------------------------------
consensus_13896#1      ------------------------------------------------------------
consensus_13896#0      CCCCCTCCACCTCGGCTCCTGCTCCTCCAACGCCGCCATGAATTACATCATCGGAGCATT 180
consensus_13896#3      ------------------------------------------------------------
consensus_13896#5      ------------------------------------------------------------
                                                                                   

consensus_13896#2      ------------------------------------------------------------
consensus_13896#4      ------------------------------------------------------------
consensus_13896#1      ------------------------------------------------------------
consensus_13896#0      CAAGGCGCCCTGCGACGTCTTCATCACCTTCGCCGATGAGAGGAGCCGGAAGCAGGTGGC 240
consensus_13896#3      ------------------------------------------------------------
consensus_13896#5      ------------------------------------------------------------
                                                                                   

consensus_13896#2      ------------------------------------------------------------
consensus_13896#4      ------------------------------------------------------------
consensus_13896#1      ------------------------------------------------------------
consensus_13896#0      GATCAAGAAGGATAACGGGAAGACGTTGATGGTGCCGGCCTTCCAGAGCCTGGAGACTAT 300
consensus_13896#3      ------------------------------------------------------------
consensus_13896#5      ------------------------------------------------------------
                                                                                   

consensus_13896#2      ------------------------------------------------------------
consensus_13896#4      ------------------------------------------------------------
consensus_13896#1      ------------------------------------------------------------
consensus_13896#0      TGCAGGAGAGGTGTCGGTAGCGCCCGTTCCAGGTAAAAGGGTGGAGCACCAAGGTGTCAA 360
consensus_13896#3      ------------------------------------------------------------
consensus_13896#5      ------------------------------------------------------------
                                                                                   

consensus_13896#2      ------------------------------------------------------------
consensus_13896#4      ------------------------------------------------------------
consensus_13896#1      ------------------------------------------------------------
consensus_13896#0      GATTGAGCTGCTGGGTCAGATAGAGCTGTACCATGAGAGAGGTCACTTCTATGACTTCAC 420
consensus_13896#3      ------------------------------------------------------------
consensus_13896#5      ------------------------------------------------------------
                                                                                   

consensus_13896#2      ------------------------------------------------------------
consensus_13896#4      ------------------------------------------------------------
consensus_13896#1      ------------------------------------------------------------
consensus_13896#0      TTCGTTAGTGCGAGAGTTAGAGGTTGCTGGTGAAATCTATGAAAGGAAGACTTATCCATT 480
consensus_13896#3      ------------------------------------------------------------
consensus_13896#5      ------------------------------------------------------------
                                                                                   

consensus_13896#2      ------------------------------------------------------------
consensus_13896#4      ------------------------------------------------------------
consensus_13896#1      ------------------------------------------------------------
consensus_13896#0      TGAATTCTCTACTGTTGAGATGCCTTATGAGTCGTATAACGGAACAAATGTCAGATTGAG 540
consensus_13896#3      ------------------------------------------------------------
consensus_13896#5      ------------------------------------------------------------
                                                                                   

consensus_13896#2      ------------------------------------------------------------
consensus_13896#4      ------------------------------------------------------------
consensus_13896#1      ------------------------------------------------------------
consensus_13896#0      GTACATCCTGAAAGTTACAATTGGCAGACCATATGCTACTAGTGTTGTGGAATGTCGAGA 600
consensus_13896#3      ------------------------------------------------------------
consensus_13896#5      ------------------------------------------------------------
                                                                                   

consensus_13896#2      ------------------------------------------------------------
consensus_13896#4      ------------------------------------------------------------
consensus_13896#1      ------------------------------------------------------------
consensus_13896#0      TTTCTGTGTAAGGAATTACACTCCTCTTCCTTCAATTAACAATAGCATCAAGATGGAAGT 660
consensus_13896#3      ------------------------------------------------------------
consensus_13896#5      ------------------------------------------------------------
                                                                                   

consensus_13896#2      ------------------------------------------------------------
consensus_13896#4      ------------------------------------------------------------
consensus_13896#1      ------------------------------------------------------------
consensus_13896#0      TGGAATTGAAGATTGTTTGCATATTGAATTTGAGTACAGCAAAAGCAAGTACCATCTCAA 720
consensus_13896#3      ------------------------------------------------------------
consensus_13896#5      ------------------------------------------------------------
                                                                                   

consensus_13896#2      ------------------------------------------------------------
consensus_13896#4      ------------------------------------------------------------
consensus_13896#1      ------------------------------------------------------------
consensus_13896#0      GGATGTGATCGTGGGAAAAATCTATTTTCTTCTAGTCAGAATAAAGATAAAGAACATGGA 780
consensus_13896#3      ------------------------------------------------------------
consensus_13896#5      ------------------------------------------------------------
                                                                                   

consensus_13896#2      ------------------------------------------------------------
consensus_13896#4      ------------------------------------------------------------
consensus_13896#1      ------------------------------------------------------------
consensus_13896#0      GCTTGAGATTCGTCGGCGGGAATCAACAGGATCTGGGCCTGGCACATATATTGAGACTGA 840
consensus_13896#3      ------------------------------------------------------------
consensus_13896#5      ------------------------------------------------------------
                                                                                   

consensus_13896#2      ------------------------------------------------------------
consensus_13896#4      ------------------------------------------------------------
consensus_13896#1      ------------------------------------------------------------
consensus_13896#0      GACACTTGCAAAGTTTGAGTTGATGGATGGCGCTCCCGTAAGAGGTGAGTCTATTCCGGT 900
consensus_13896#3      ------------------------------------------------------------
consensus_13896#5      ------------------------------------------------------------
                                                                                   

consensus_13896#2      ------------------------------------------------------------
consensus_13896#4      ------------------------------------------------------------
consensus_13896#1      ------------------------------------------------------------
consensus_13896#0      AAGACTCTTCTTGACACCATATGAGTTGACCCCGACTTACCGCAACATAAACAACAAGTT 960
consensus_13896#3      ------------------------------------------------------------
consensus_13896#5      ------------------------------------------------------------
                                                                                   

consensus_13896#2      ------------------------------------------------------------
consensus_13896#4      ------------------------------------------------------------
consensus_13896#1      ------------------------------------------------------------
consensus_13896#0      CAATGTCAAGTACTACCTGAACCTGGTTCTTGTTGACGAGGAAGACCGGAGGTACTTCAA 1020
consensus_13896#3      ------------------------------------------------------------
consensus_13896#5      ------------------------------------------------------------
                                                                                   

consensus_13896#2      ------------------------------------------------------------
consensus_13896#4      ------------------------------------------------------------
consensus_13896#1      ---------------------------------------------------------AAA 3
consensus_13896#0      GCAGCAAGAGATCACAATGTACCGCCTTCAAGAAACTCCGCAATCTTCATAAACTCCTGT 1080
consensus_13896#3      ------------------------------------------------------------
consensus_13896#5      ------------------------------------------------------------
                                                                                   

consensus_13896#2      -------------------------------------------------AGAGCCCCGGA 11
consensus_13896#4      ------------------------------------------------------------
consensus_13896#1      ACTGGGTCTGTCTGGNCCATAGGGAGGAGCCCCCCGGANTNAGCAAACTTAGCATGGATG 63
consensus_13896#0      TGCCTTGACTTGGTAACGACCAGAAAAACTTGGGTCTGTCTGGCATAGGAGAGCACCGGA 1140
consensus_13896#3      ------------------------------------------------------------
consensus_13896#5      ------------------------------------------------------------
                                                                                   

consensus_13896#2      GTAGCAACTTAGCATGATGGGCCTTCCTGTATATAACTTTCCAAAGGAGCGATGCCCTTT 71
consensus_13896#4      ------------------------------------------------------------
consensus_13896#1      CNGCCCTCCCTGTAAAATAAACTCCTCCCAGGGGGAACCGATGCCCCCTTGGTGGATGTA 123
consensus_13896#0      GTAGCAACTTAGCATGATGCGCCTTCCTGTATATAACTCTCCAGAGGAGCGATGCCCTTT 1200
consensus_13896#3      -------------------------------------------------------GCGGC 5
consensus_13896#5      ------------------------------------------------------------
                                                                                   

consensus_13896#2      GTGATGTACCGTGGACTGTTTTTGCCTATGGTTTTTTCCCCCCCATTTTTTCCTTCATTT 131
consensus_13896#4      ------------------------------------------------------------
consensus_13896#1      CCGTGGTAACTGTTTTTGGCCCTATGCTCTTTTCCCCCCCCCCATTTCTCCCTTCCATTC 183
consensus_13896#0      GTGATGTACCGTGTACTGTTTTTGCCTATGCTCTTTTCCCCCCCATTTTCTCCTTCATTC 1260
consensus_13896#3      GGTTGACGTCTCCGACGCCGGCGATCTCCTCCGCCCCCTCCCCTCCCCCGCCGNCGACGN 65
consensus_13896#5      ------------------------------------------------------------
                                                                                   

consensus_13896#2      TGA--TCAGGAAA-CAAACCATGG-CAACGGTGGC-ATTGTTGCCC-TTTTTGCC-TTGT 184
consensus_13896#4      -GA--TCAGGAAA-CAAACCATGA-CAACGCTGGC-ATTGTTGCCC-TTTTCGCC-TTGT 52
consensus_13896#1      TGAATCCAGGAAAACAAACCATGAACAACGCTGGCCATTGTTNCCCCTTTTCGCCCTTGT 243
consensus_13896#0      TGA--TCAGGAAA-CAAACCATGA-CAACGCTGGC-ATTGTTGCCC-TTTTCGCC-TTGT 1313
consensus_13896#3      CGACCCTCCTCAGCTCGGCCGCCACCTCCTCCGCCAGAGGGAGAGCCCCCTNCACCTCGG 125
consensus_13896#5      ------------------------------------------------------------
                                                                                   

consensus_13896#2      TC-ATTTGAGGTTTTTTGTTAGACTTTGTGGGATAACCAAAAATTTGGTGAAATTTTGGT 243
consensus_13896#4      TC-ATTTGAGCTTTCTTGTTAGACTTTGTGGGATAACCATATATTTGTTGATATTTTGCT 111
consensus_13896#1      TCCATTTGAGCTTTCTTGTTAGACTTTGTGGGATAACCATATATTTGTTGATATTTTGCT 303
consensus_13896#0      TC-ATTTGAGCTTTCTTGTTAGACTTTGTGGGATAACCATATATTTGTTGATATTTTGCT 1372
consensus_13896#3      AT--CCTGNTCCTCCAACGACGCATGNATTACATCATAGGAGCATTCAAGGCGCCCTGCG 183
consensus_13896#5      -----------------------------------------CCGTTCAAGGCGCCCTGCG 19
                                                                   **   *      **  

consensus_13896#2      TCATTGTTTTACCCTTTAATAAGTTCAGTTGAACCCGATATGGTTTCCAAGTTGAAAAAA 303
consensus_13896#4      TCATTGTTTTACCCTTTAATAAGTTCAGTTGAACCCGATATGGTCTCCAAAAAAAAAAAA 171
consensus_13896#1      TCATTGTTTTACCCTTTAATAAGTTCAGTTGAACCCGATATGGTCTCCAAGTCGATGTAC 363
consensus_13896#0      TCATTGTTTTACCCTTTAATAAGTTCAGTTGAACCCGATATGGTCTCCAAGTCGATGTAC 1432
consensus_13896#3      ACGTCTTCATCACCTTCGNNGA--TGAGAGGAGACGNAAGCAGGTNGCGATCAAGAAGGA 241
consensus_13896#5      ACGTCTTCATCACCTTCGCCGA--TGAGAGGAGCCGGAAGCAGGTGGCGATCAAGAAGGA 77
                        * *  *  *  ****     *  * **  **  *  *    *    * *          

consensus_13896#2      AAAAAAAAAAAAAAAAAAAAAAAAAAA--------------------------------- 330
consensus_13896#4      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANAAAAAAA 231
consensus_13896#1      TGCTGGCTGCATGTTGATTTTGTACCAAAGCAAGAAATCTGAACAAACTCTNATTGGAAA 423
consensus_13896#0      TGCTGGCTGCATGTTGATTTTGTACCAAAGCAAGAAATCTGAACAAACTCTGATTGGAAA 1492
consensus_13896#3      TAACGGGAAGACGTTGATGGTGCAGNCCTTCC-AGAGNCTNGAGACTATTNCAGGAGAAG 300
consensus_13896#5      TAACGGGAAGACGTTGATGGTGCCGGCCTTCCCAGAGCCTGGAGACTATTGCAGGAGAGG 137
                                 *     *                                           

consensus_13896#2      ------------------------------------------------------------
consensus_13896#4      NAANANAANNAN------------------------------------------------ 243
consensus_13896#1      CAGTATGAACAAACAACACTGGAATGTAACTGTTTGCGTGTGAATGATAAAGTTAGCTAT 483
consensus_13896#0      CAGTATGAACAAACAACACTGGAATGTAACTGTTTGCGTGTGA----------------- 1535
consensus_13896#3      TGTAGGTAGAGNCCNTTCCAG--------------------------------------- 321
consensus_13896#5      TGTCGGTAGCGCCCGTTCCAGGTAAAAGGGTGGAGCACCAAGGTGTCAAGATTGAGCNTC 197
                                                                                   

consensus_13896#2      ----------------------------------
consensus_13896#4      ----------------------------------
consensus_13896#1      ACTGTGTCCAAGTCAATTCAGAGAATAAAAAAAA 517
consensus_13896#0      ----------------------------------
consensus_13896#3      ----------------------------------
consensus_13896#5      TTGGNNAANTTAAA-------------------- 211
                                                         




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)