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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13899#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 2072 fasta sequence
[ACTCGCGCATCGCCCGCCCACACTAGGGTTTTTGATCCGCTTCGCCGCCGCCGCCGCCGCCGCCTCCTTCTCCTCCTCCTCCGCGGCCGTCACCGATCTCATCCGCCGCCGACGATGGTGGGGCTGGGCGCGATGCCGGGGTACGGGATCCAGTCCATGCTCAAGGAGGGGCACAAGCACCTCTCCGGCCTCGATGAGGCCGTCCTCAAGAACATCGACGCCTGCCGCGAGCTCTCCGCCATCACCCGCACCTCCCTCGGCCCCAACGGAATGAATAAGATGGTCATTAACCATCTCGACAAGCTCTTTGTCACGAACGATGCTGCAACAATTGTGAATGAGCTCGAGGTCCAGCACCCTGCTGCTAAGATCCTGGTACTAGCTGGCAGGGCTCAGCAGGAGGAAATCGGTGATGGAGCTAACCTCACCATATCTTTTGCTGGTGAACTGCTTGAGAAGGCCGAGGAGCTTATCAGGATGGGGTTGCATCCAAGTGAGATCATCATTGGCTACACCAAGGCCATTAATAAGACTGTTGAGATCTTGGAAGATCTTGTGGAGAAAGGTTCAGAGAACATGGATGTGAGGAACAAGGAGGAGGTTGTGTTGCTGATGAGATCTGCAGTTGCGAGCAAGCAATTCGGTCAGGAGGATATATTGTGCCCTCTTGTGGCTGATGCCTGTATGCAAGTCTGCCCGAAAAATCCTGCTAACTTCAACGTTGACAATGTTAGAGTTGCGAAACTACTTGGAGGTGGTTTGCACAACTCTTCTGTAGTCCGGGGGATGGTTCTGAAAAATGACGCTGTTGGGAGCATCAAAAGGGTGGAGAAGGCAAAGATTGCAGTATTTGCTGGCGGTGTTGATACTTCTGCAACTGAAACCAAGGGAACTGTTTTGATACATTCTGCTGAGCAGCTAGAAAACTATGCTAAGACTGAGGAAGCTAAGGTGGAGGAGCTTATCAAAGCTGTTGCTGACTCGGGTGCAAAGGTTATTGTCAGTGGAGCAGCAGTTGGCGACATGGCACTGCATTTCTGTGAGCGTTACAAGCTAATGGTTCTTAGAATCAGTTCAAAATTTGAACTGAGAAGATTTTGCCGTACTACAGGGTCCATTGCACTTTTGAAACTCAGCCGACCAAATGCGGATGAATTAGGATATGCAGACTCTGTTTCGGTGGAAGAGATCGGTGGTGCCCGAGTAACTGTTGTCAAGAATGAAGAAGGTGGAAACTCAGTGGCTACGGTTGTCTTAAGAGGCAGCACCGATAGTATATTGGATGATCTTGAAAGAGCTGTTGATGATGGTGTGAATACTT-ACAAGTCAATGTGCAGGGATAGTCGGATTATTCCT-GGAGCTGCTGCAACAGAAATAGAATTGGCAAGGAGA-TTGAAGGAATTTT-CTCTGAAGGAAACAGGG-TTGGACCAGTATGCCATTGCAAAATTTGCTGAAAGTTTTGAAATGGTTCCAAGAACCCTGGCTGAAAATGCTGGGCTTAGTGCTATGGAGATAATATCTTCCCTTTATGCTGAACATGCTGGTGGGAATACGAAAGTTGGTATTGACTTGGAAGAAGGTGGTTGCAAGGATGTCTCAATCATGAAAATATGGGACCTTTATGTTACAAAGTTATTCGCTCTAAAATACTCTGCGGATGCTGCATGTACTGTACTGCGGGTTGACCAGATCATCATGGCAAAGCCAGCAGGAGGGCCAAGGAGAGATGCTCAGCCTGGAATGGACGAAGATTAGTTTGCTACCGTG-CTATATTTTCCATGTTTACCGTGTTCTGAGGTTTCTCCGAAGTAGACCTCTTTTTTATCTTATTTATAAGTTTGGTTCAGTAGGAAGATTTTGGTGCCTGGACAGCACGTTTGGGTGGGGGCTGCATGGTTGAGCTGATTTTCTGCGGGGTATGTGTTTGTGAGTTTGTCTCGGTGTATTATTATCATGCCAATGTATCAAAATGGTTAGCTCTAAAAA-GGATTTGTTCTTTCAGATTTGTATGCCGAAGTATCTTTTTTCTTTGTTGCGCTGAACTCTTTTTTGTTCTACGGTATGATGAATCA]
[+] EMBL OSS13145A [ACTCGCGCATCGCCCGCCCACACTAGGGTTTTTGATCCGCTTCGCCGCCGCCGCCGCCGCCGCCTCCTTCTCCTCCTCCTCCGCGGCCGTCACCGATCTCATCCGCCGCCGACGATGGTGGGGCTGGGCGCGATGCCGGGGTACGGGATCCAGTCCATGCTCAAGGAGGGGCACAAGCACCTCTCCGGCCTCGATGAGG CGTCCTCAAGAACATCGACGNCTGCCGCGAGCTCTCCGNCATCACCCGCACCTCCCTCGGCCCCAACGGAATGAATAAGATGGTCATTAACCATCTCGACAAGCTCTTTGTCACGAACGATGCTNCAACAATTGTGAATGAGCT ]
[+] EMBL CB672564 [ CCCGCCCACACTAGGGTTTTTGATCCGCTTCGCCGCCGCCGCCGCCGCCGCCTCCTTCTCCTCCTCCTCCGCGGCCGTCACCGATCTCATCCGCCGCCGACGATGGTGGGGCTGGGCGCGATGCCGGGGTACGGGATCCAGTCCATGCTCAAGGAGGGGCACAAGCACCTCTCCGGCCTCGATGAGGCCGTCCTCAAGAACATCGACGCCTGCCGCGAGCTCTCCGCCATCACCCGCACCTCCCTCGGCCCCAACGGAATGAATAAGATGGTCATTAACCATCTCGACAAGCTCTTTGTCACGAACGATGCTGCAACAATTGTGAATGAGCTCGAGGTCCAGCACCCTGCTGCTAAGATCCTGGTACTAGCTGGCAGGGCTCAGCAGGAGGAAATCGGTGATGGAGCTAACCTCACCATATCTTTTGCTGGTGAACTGCTTGAGAAGGCCGAGGAGCTTATCAGGATGGGGTTGCATCCAAGTGAGATCATCATTGGCTACACCAAGGCCATTAATAAGACTGTTGAGATCTTGGAAGATCTTGTGGAGAAAGGTTCAGAGAACATGGATGTGAGGAACAAGGAGGAGGTTGTGTTGCTGATGAGATCTGCAGTTGCGAGCAAGCAATTCGGTCAGGAGGATATATTGTGCCCTCTTGTGGCTGATGCCTGTATGCAAGTCTGCCCGAAAAATCCTGCTAACTTCAACGTTGACAATGTTAGAGTTGCGAAACTACTTGGAGGTGGTTTGCACTACTCTTCTGTA ]
[+] EMBL AK100651 [ ACTAGGGTTTTTGATCCGCTTCGCCGCCGCCGCCGCCGCCGCCTCCTTCTCCTCCTCCTCCGCGGCCGTCACCGATCTCATCCGCCGCCGACGATGGTGGGGCTGGGCGCGATGCCGGGGTACGGGATCCAGTCCATGCTCAAGGAGGGGCACAAGCACCTCTCCGGCCTCGATGAGGCCGTCCTCAAGAACATCGACGCCTGCCGCGAGCTCTCCGCCATCACCCGCACCTCCCTCGGCCCCAACGGAATGAATAAGATGGTCATTAACCATCTCGACAAGCTCTTTGTCACGAACGATGCTGCAACAATTGTGAATGAGCTCGAGGTCCAGCACCCTGCTGCTAAGATCCTGGTACTAGCTGGCAGGGCTCAGCAGGAGGAAATCGGTGATGGAGCTAACCTCACCATATCTTTTGCTGGTGAACTGCTTGAGAAGGCCGAGGAGCTTATCAGGATGGGGTTGCATCCAAGTGAGATCATCATTGGCTACACCAAGGCCATTAATAAGACTGTTGAGATCTTGGAAGATCTTGTGGAGAAAGGTTCAGAAAACATGGATGTGAGGAACAAGGAGGAGGTTGTGTTGCTGATGAGATCTGCAGTTGCGAGCAAGCAATTCGGTCAGGAGGATATATTGTGCCCTCTTGTGGCTGATGCCTGTATGCAAGTCTGCCCGAAAAATCCTGCTAACTTCAACGTTGACAATGTTAGAGTTGCGAAACTACTTGGAGGTGGTTTGCACAACTCTTCTGTAGTCCGGGGGATGGTTCTGAAAAATGACGCTGTTGGGAGCATCAAAAGGGTGGAGAAGGCAAAGATTGCAGTATTTGCTGGCGGTGTTGATACTTCTGCAACTGAAACCAAGGGAACTGTTTTGATACATTCTGCTGAGCAGCTAGAAAACTATGCTAAGACTGAGGAAGCTAAGGTGGAGGAGCTTATCAAAGCTGTTGCTGACTCGGGTGCAAAGGTTATTGTCAGTGGAGCAGCAGTTGGCGACATGGCACTGCATTTCTGTGAGCGTTACAAGCTAATGGTTCTTAGAATCAGTTCAAAATTTGAACTGAGAAGATTTTGCCGTACTACAGGGTCCATTGCACTTTTGAAACTCAGCCGACCAAATGCGGATGAATTAGGATATGCAGACTCTGTTTCGGTGGAAGAGATCGGTGGTGCCCGAGTAACTGTTGTCAAGAATGAAGAAGGTGGAAACTCAGTGGCTACGGTTGTCTTAAGAGGCAGCACCGATAGTATATTGGATGATCTTGAAAGAGCTGTTGATGATGGTGTGAATACTT ACAAGTCAATGTGCAGGGATAGTCGGATTATTCCT GGAGCTGCTGCAACAGAAATAGAATTGGCAAGGAGA TTGAAGGAATTTT CTCTGAAGGAAACAGGG TTGGACCAGTATGCCATTGCAAAATTTGCTGAAAGTTTTGAAATGGTTCCAAGAACCCTGGCTGAAAATGCTGGGCTTAGTGCTATGGAGGTAATATCTTCCCTTTATGCTGAACATGCTGGTGGGAATACGAAAGTTGGTATTGACTTGGAAGAAGGTGGTTGCAAGGATGTCTCAATCATGAAAATATGGGACCTTTATGTTACAAAGTTATTCGCTCTAAAATACTCTGCGGATGCTGCATGTACTGTACTGCGGGTTGACCAGATCATCATGGCAAAGCCAGCAGGAGGGCCAAGGAGAGATGCTCAGCCTGGAATGGACGAAGATTAGTTTGCTACCGTG CTATATTTTCCATGTTTACCGTGTTCTGAGGTTTCTCCGAAGTAGACCTCTTTTTTATCTTATTTATAAGTTTGGTTCAGTAGGAAGATTTTGGTGCCTGGACAGCACGTTTGGGTGGGGGCTGCATGGTTGAGCTGATTTTCTGCGGGGTATGTGTTTGTGAGTTTGTCTCGGTGTATTATTATCATGCCAATGTATCAAAATGGTTAGCTCTAAAAA GGATTTGTTCTTTCAGATTTGTATGCCGAAGTATCTTTTTTCTTTGTTGCGCTGAACTCTTTTTTGTTCTACGGTATGATGAATCA]
[+] EMBL CB621033 [ TCAAGGAGGGGCACAAGCACCTCTCCGGCCTCGATGAGGCCGTCCTCAAGAACATCGACGCCTGCCGCGAGCTCTCCGCCATCACCCGCACCTCCCTCGGCCCCAACGGAATGAATAAGATGGTCATTAACCATCTCGACAAGCTCTTTGTCACGAACGATGCTGCAACAATTGTGAATGAGCTCGAGGTCCAGCACCCTGCTGCTAAGATCCTGGTACTAGCTGGCAGGGCTCAGCAGGAGGAAATCGGTGATGGAGCTAACCTCACCATATCTTTTGCTGGTGAACTGCTTGAGAAGGCCGAGGAGCTTATCAGGATGGGGTTGCATCCAAGTGAGATCATCATTGGCTACACCAAGGCCATTAATAAGACTGTTGAGATCTTGGAAGATCTTGTGGAGAAAGGTTCAGAGAACATGGATGTGAGGAACAAGGAGGAGGTTGTGTTGCTGATGAGATCTGCAGTTGCGAGCAAGCAATTCGGTCAGGAGGATATATTGTGCCCTCTTGTGGCTGATGCCTGTATGCAAGTCTGCCCGAAAAATCCTGCTAACTTCAACGTTGACAATGTTAGAGTTGCGAAACTACTTGGAGGTGGTTTGCACAACTCTTCTGTAGTCCGGGGGATGGTTCTGAAAAATGACGCTGTTGGGAGCATCAAAAGGGTGGAGAAGGCAAAGATTGCAGTATTTGCTGGCGGTGTTGATACTTCTGCAACTGANACCAAGGGAACTGTTTTGATACATTCTGCTGAGCAGCTAGAAAct ]
[+] EMBL CB663477 [ TTGCGAGCAAGCAATTCGGTCAGGAGGATATATTGTGCCCTCTTGTGGCTGATGCCTGTATGCAAGTCTGCCCGAAAAATCCTGCTAACTTCAACGTTGACAATGTTAGAGTTGCGAAACTACTTGGAGGTGGTTTGCACAACTCTTCTGTAGTCCGGGGGATGGTTCTGAAAAATGACGCTGTTGGGAGCATCAAAAGGGTGGAGAAGGCAAAGATTGCAGTATTTGCTGGCGGTGTTGATACTTCTGCAACTGAAACCAAGGGAACTGTTTTGATACATTCTGCTGAGCAGCTAGAAAACTATGCTAAGACTGAGGAAGCTAAGGTGGAGGAGCTTATCAAAGCTGTTGCTGACTCGGGTGCAAAGGTTATTGTCAGTGGAGCAGCAGTTGGCGACATGGCACTGCATTTCTGTGAGCGTTACAAGCTAATGGTTCTTAGAATCAGTTCAAAATTTGAACTGAGAAGATTTTGCCGTACTACAGGGTCCATTGCACTTTTGAAACTCAGCCGACCAAATGCGGATGAATTAGGATATGCAGACTCTGTTTCGGTGGAAGAGATCGGTGGTGCCCGAGTAACTGTTGTCAAGAATGAAGAAGGTGGAAACTCAGTGGCTACGGTTGTCTTAAGAGGCAGCACCGATAGTATATTGGATGATCTTGAAAGAGCTGTTGATGATGGTGTGAATACTT ACAAGTCAATGTGCAGGGATAGTCGGATTATTCCT ]
[+] EMBL AA750498 [ AGCAGTTGGCGACATGGCACTGCATTTCTGTGAGCGTTACAAGCTAATGGTTCTTAGAATCAGTTCAAAATTTGAACTGAGAAGATTTTGCCGTACTACAGGGTCCATTGCACTTTTGAAACTCAGCCGACCAAATGCGGATGAATTAGGATATGCAGACTCTGTTTCGGTGGAAGAGATCGGTGGTGCCCGAGTAACTGTTGTCAAGAATGAAGAAGGTGGAA ]
[+] EMBL C27485 [ ccanAAATTTNANCTGAGAAGATTTTCCCGTACTACCATCTCCATTGCACTTTTAAAACTCAGCCGACCAAATGCGGATGANTTAGGATATGCAGACTCTGTTTCGGTGGAAGAGATCGGTGGTGCCCGAGTAACTGTTGTCAAGAATGAAGAAGGTGGAAACTCAGTGGCTACGGTTGTNTTAAGAGGCAGCACCGATAGTATATTGGATGATCTTGAAAGAGCTGTTGATGATGGTGTGAATACTT ACAAGTCAATGTGCAGGGATAGTCGGATTATTCCTGGGGGCTGCTGCAACAGAAATAGAATTGGCAAGGAGATTTGAAGGAATTTTCCTCTGAAGGAAACAGGGTTTNGACCAGTATGCC ]
[+] EMBL AU225407 [ gccgcTGCACTTTTGAAACTCAGCCGACCAAATGCGGATGAATTAGGATATGCAGACTCTGTTTCGGTGGAAGAGATCGGTGGTGCCCGAGTAACTGTTGTCAAGAATGAAGAAGGTGGAAACTCAGTGGCTACGGTTGTCTTAAGAGGCAGCACCGATAGTATATTGGATGATCTTGAAAGAGCTGTTGATGATGGTGTGAATACTT ACAAGTCAATGTGCAGGGATAGTCGGATTATTCCT GGAGCTGCTGCAACAGAAATAGAATTGGCAAGGAGA TTGAAGGAATTTT CTCTGAAGGAAACAGGG TTGGACCAGTATGCCATTGCAAAATTTGCTGAAAGTTTTGAAATGGTTCCAAGAACCCTGGCTGAAAATGCTGGGCTTAGTGCTATGGAGATAATATCTTCCCTTTATGCTGAACAT ]
[-] EMBL CB663478 [ CAGACTCTTTTTC GTGGAAGAGATCGGTGGTGCCCGAGTAACTGTTGTCAAGAATGAAGAAGGTGGAAACTCAGTGGCTACGGTTGTCTTAAGAGGCAGCACCGATAGTATATTGGATGATCTTGAAAGAGCTGTTGATGATGGTGTGAATACTT ACAAGTCAATGTGCAGGGATAGTCGGATTATTCCT GGAGCTGCTGCAACAGAAATAGAATTGGCAAGGAGA TTGAAGGAATTTT CTCTGAAGGAAACAGGG TTGGACCAGTATGCCATTGCAAAATTTGCTGAAAGTTTTGAAATGGTTCCAAGAACCCTGGCTGAAAATGCTGGGCTTAGTGCTATGGAGATAATATCTTCCCTTTATGCTGAACATGCTGGTGGGAATACGAAAGTTGGTATTGACTTGGAAGAAGGTGGTTGCAAGGATGTCTCAATCATGAAAATATGGGACCTTTATGTTACAAAGTTATTCGCTCTAAAATACTCTGCGGATGCTGCATGTACTGTACTGCGGGTTGACCAGATCATCATGGCAAAGCCAGCAGGAGGGCCAAGGAGAGATGCTCAGCCTGGAATGGACGAAGATTAGTTTGCTCCCGTG CTATATTTTCCATGTTTACCGTGTTCTGAGGTTTCTCCGAAGTAGCCCTCTTTTTTATCTTATTTATAAGTTTGGTTCAGTAGGAAGATTTTGGTGCCTGGACAGCACGTTTGGGTGGGGGCTGCATGGTTGAGCTGATTTTCTGCGGGGTATGTGTTTGTGAGTTTGTCTCGGTGTATTATTATCATGCCAATGTATCAAAATGGTTAGCTCTAAAAAGGGATT ]
[-] EMBL CB672565 [ ACCGATAGTATATTGGATGATCTTGAAAGAGCTGTTGATGATGGTGTGAATACTT ACAAGTCAATGTGCAGGGATAGTCGGATTATTCCT GGAGCTGCTGCAACAGAAATAGAATTGGCAAGGAGA TTGAAGGAATTTT CTCTGAAGGAAACAGGG TTGGACCAGTATGCCATTGCAAAATTTGCTGAAAGTTTTGAAATGGTTCCAAGAACCCTGGCTGAAAATGCTGGGCTTAGTGCTATGGAGATAATATCTTCCCTTTATGCTGAACATGCTGGTGGGAATACGAAAGTTGGTATTGACTTGGAAGAAGGTGGTTGCAAGGATGTCTCAATCATGAAAATATGGGACCTTTATGTTACAAAGTTATTCGCTCTAAAATACTCTGCGGATGCTGCATGTACTGTACTGCGGGTTGACCAGATCATCATGGCAAAGCCAGCAGGAGGGCCAAGGAGAGATGCTCAGCCTGGAATGGACGAAGATTAGTTTGCTACCGTG CTATATTTTCCATGTTTACCGTGTTCTGAGGTTTCTCCGAAGTAGACCTCTTTTTTATCTTATTTATAAGTTTGGTTCAGTAGGAAGATTTTGGTGCCTGGACAGCACGTTTGGGTGGGGGCTGCATGGTTGAGCTGATTTTCTGCGGGGTATGTGTTTGTGAGTTTGTCTCGGTGTATTATTATCATGCCAATGTATCAAAATGAAAGGCTCTAAAAA GGATTT ]
[+] EMBL AU085717 [ CTTNACAAGTCAATGTCCAGGGATAGTCGGATTATTCCT GGAGCTGCTGCAACAGAAATAGAATTGGCAAGGAGA TTGAAGGAATTTT CTCTGAAGGAAACAGGG TTGGACCAGTATGCCATTGCAAAATTTGCTGAAAGTTTTGAAATGGTTCCAAGAACCCTGGCTGAAAATGCTGGGCTTAGTGCTATGGAGATAATATCTTCCCTTTATGCTGAACATGCTGGTGGGAATACGAAAGTTGGTATTGACTTGGAAGAAGGTGGTTGCAAGGATGTCTCAATCATGAAAATAT GGACCTTTATGTTACAAAGTTATTCGCTCTAAAATACTCTGCGGATGCTGCATGTACTGTACTGCGGGTTGACCAGNTCATCATGGCAAAGCCAGCAGGAGGGCCAAGGAGAGATGCTCAGCCTGGAATGGACGAAGATTAGTTTGCTACCGTGCCTATATTTTCCATGTTTACCGTGTTCTGAGGTTTCTCCGAAGTAGACCTCTTTTTTATCTTATTTATAAGTTTGGTTCAGTAGGAAGATTTTGGTGCCTGGACAGCACGTTTGGGTGGGGGCTGCATGGTTGAGCTGATTTTCTGCGGGGTATGTGTTTGTGAGTTTGTCTCGGTGTATTATTATCATGCCAATGTATCAAAATGGTTAGCTCTAAAAA GGATTTGTTCTTTCAGATTaaaaa ]
consensusID : consensus_13899#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 769 fasta sequence
[CGATCTCATCCGCCGCCGACGATGGTGGGGCTGGGCGCGATGCCGGGGTACGGGATCCAGTCCATGCTCAAGGAGGGGCACAAGCACCTCTCCGGCCTCGATGAGGCCGTCCTCAAGAACATCGACGCCTGCCGCGAGCTCTCCGCCATCACCCGCACCTCCCTCGGCCCCAACGGTGAGGCCCCCTTCCCTCTCCTTCCCCGCTCTGTGCTCCGGCGTCTTCGTTGCCCGCGTTTTGATCCGAGAAGTTTGGGATCTAGCGATGTGCCACGGCGGACTCGATCGATATATCAAATCTGGGGAGTGTCGCGCGCGTGATGTGGTGGTACGGTAGAAATGGTTAGGCTATGGCCCTTGTTGCTGCATCCACAGTGTGTTAATTATTTAGCTGCAGAAAAGATGAGCTTTTGTTTGTTCAACCCTTAGGTAATGAGGTTGAAGACAGTATTGTGATGAAGTCGTTAGTAGTGTTTCACATTTAGCTAATTTAATGGTGCAGAGAAAAGTTGTGGATCTTTTGGACACTAAAAAATTGTGGTGCCTGTCTTGCGGTTTTAGGTTGAGTTCAGTTAATTTTTCAGCGATTTATTGTTAGAGGCCAGCAGTAAACATGCTCCTGCGCTACATTTTTCTGTGATGTATAATATCTGACAGATTCATGTTAGTATCAGAAGCTAGTTTCTTAACAGCATCGCTGTTTTGTTTTGGTAGGAATGAATAAGATGGTCATTAACCATCTCGACAAGCTCTTTGTCACGAACGATGCTGC]
[-] EMBL CB627082 [CGATCTCATCCGCCGCCGACGATGGTGGGGCTGGGCGCGATGCCGGGGTACGGGATCCAGTCCATGCTCAAGGAGGGGCACAAGCACCTCTCCGGCCTCGATGAGGCCGTCCTCAAGAACATCGACGCCTGCCGCGAGCTCTCCGCCATCACCCGCACCTCCCTCGGCCCCAACGGTGAGGCCCCCTTCCCTCTCCTTCCCCGCTCTGTGCTCCGGCGTCTTCGTTGCCCGCGTTTTGATCCGAGAAGTTTGGGATCTAGCGATGTGCCACGGCGGACTCGATCGATATATCAAATCTGGGGAGTGTCGCGCGCGTGATGTGGTGGTACGGTAGAAATGGTTAGGCTATGGCCCTTGTTGCTGCATCCACAGTGTGTTAATTATTTAGCTGCAGAAAAGATGAGCTTTTGTTTGTTCAACCCTTAGGTAATGAGGTTGAAGACAGTATTGTGATGAAGTCGTTAGTAGTGTTTCACATTTAGCTAATTTAATGGTGCAGAGAAAAGTTGTGGATCTTTTGGACACTAAAAAATTGTGGTGCCTGTCTTGCGGTTTTAGGTTGAGTTCAGTTAATTTTTCAGCGATTTATTGTTAGAGGCCAGCAGTAAACATGCTCCTGCGCTACATTTTTCTGTGATGTATAATATCTGACAGATTCATGTTAGTATCAGAAGCTAGTTTCTTAACAGCATCGCTGTTTTGTTTTGGTAGGAATGAATAAGATGGTCATTAACCATCTCGACAAGCTCTTTGTCACGAACGATGCTGC]
consensusID : consensus_13899#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 750 fasta sequence
[CACCGATAGTATATTGGATGATCTTGAAAGAGCTGTTGATGATGGTGTGAATAGTTACAAGTCAATGTGCAGGGATAGTCGGATTATTCCTGGAGCTGCTGCAACAGAAATAGAATTGGCAAGGAGATTGAAGGAATTTTCTCTGAAGGAAACAGGGTTGGACCAGTATGCCATTGCAAAATTTGCTGAAAGTTTTGAAATGGTTCCAAGAACCCTGGCTGAAAATGCTGGGCTTAGTGCTATGGAGATAATATCTTCCCTTTATGCTGAACATGCTGGTGGGAATACGAAAGTTGGTATTGACTTGGAAGAAGGTGGTTGCAAGGATGTCTCAATCATGAAAATATGGGACCTTTATGTTACAAAGTTATTCGCTCTAAAATACTCCGCGGATGCTGCATGTACTGTACTGCGGGTTGACCAGATCATCATGGCAAAGCCAGCAGGAGGGCCAAGGAGAGATGCTCAGCCTGGAATGGACGAAGATTAGTTTGCTACCGTGCTATATTTTCCATGTTTACCGTGTTCTGAGGTTTCTCCGAAGTAGACCTCTTTTTTTATCTTATTTATAAGTTTGGTTCAGTAGGAAGATTTTGGTGCCTGGACAGCACGTTTGGGTGGGGGCTGCATGGTTGAGCTGATTTTCTGCGGGGTATGTGTTTGTGAGTTTGTCTCGGTGTATTATTATCATGCCAATGTATCAAAAGTGGTTAGCTCTAAAAAGGATTTGTTCTTTCAAAAAAAAAAGGA]
[-] EMBL CB621034 [CACCGATAGTATATTGGATGATCTTGAAAGAGCTGTTGATGATGGTGTGAATAGTTACAAGTCAATGTGCAGGGATAGTCGGATTATTCCTGGAGCTGCTGCAACAGAAATAGAATTGGCAAGGAGATTGAAGGAATTTTCTCTGAAGGAAACAGGGTTGGACCAGTATGCCATTGCAAAATTTGCTGAAAGTTTTGAAATGGTTCCAAGAACCCTGGCTGAAAATGCTGGGCTTAGTGCTATGGAGATAATATCTTCCCTTTATGCTGAACATGCTGGTGGGAATACGAAAGTTGGTATTGACTTGGAAGAAGGTGGTTGCAAGGATGTCTCAATCATGAAAATATGGGACCTTTATGTTACAAAGTTATTCGCTCTAAAATACTCCGCGGATGCTGCATGTACTGTACTGCGGGTTGACCAGATCATCATGGCAAAGCCAGCAGGAGGGCCAAGGAGAGATGCTCAGCCTGGAATGGACGAAGATTAGTTTGCTACCGTGCTATATTTTCCATGTTTACCGTGTTCTGAGGTTTCTCCGAAGTAGACCTCTTTTTTTATCTTATTTATAAGTTTGGTTCAGTAGGAAGATTTTGGTGCCTGGACAGCACGTTTGGGTGGGGGCTGCATGGTTGAGCTGATTTTCTGCGGGGTATGTGTTTGTGAGTTTGTCTCGGTGTATTATTATCATGCCAATGTATCAAAAGTGGTTAGCTCTAAAAAGGATTTGTTCTTTCAAAAAAAAAAGGA]
consensusID : consensus_13899#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 663 fasta sequence
[TCACGGAAGTCGTGCCCACGAAACAAATACTTGCCAGGAAACTTCACGGAATTCTTTATAACAGGAACCAGGGTGGGACCCCTAAGTCAATACCAAAACGTGCTCAAAATTTTGAAATGGTTCCAAAACCCCCGGCTGAAAATGCTGGGGTTAGTGCTAGGGAGATGATATATTTCCTTTTTGCTGAACCTGGTGGTGGGAGTACGAAAGTTGGTATTGGCTTGGAAAAAGGTGGTTTCAAGGATGTCTCAATCATGAAAATATGGGCCCGTTATGTTACAAAGTTATTCGCTCTAAATACTTCGCGGATGCTGCATGTACTGTATTGCGGCTTGACCAGATCATCATGGCAAAGCCAGCTGGAGGCCCAAGGAGAGATGTTCAGCCTGGAATGGACGAAGATTAGTTTGCTACCCTGCTATATTTTCCATGTGTACCGTGTTCTCAGGTTTTTCCGAAGTAGACCTCTTATCTATCTTATTTATAAGTCTGGTTCAGTAGAAAGGTTTTCGGGCCTGGACAGCTCGTTTGGGTGGGGGCTGCATGGTTGAGCTGATTTTATGCGGGGTATGTGTTTGTGAGTTTCTCTCTGTGTCTTATTATCATGCCAATGTATCAAAATGGTTAGCTCTAAAAAGGCTTTGTTCTTTCAAAAAAAAAAAA]
[-] EMBL CA762595 [TCACGGAAGTCGTGCCCACGAAACAAATACTTGCCAGGAAACTTCACGGAATTCTTTATAACAGGAACCAGGGTGGGACCCCTAAGTCAATACCAAAACGTGCTCAAAATTTTGAAATGGTTCCAAAACCCCCGGCTGAAAATGCTGGGGTTAGTGCTAGGGAGATGATATATTTCCTTTTTGCTGAACCTGGTGGTGGGAGTACGAAAGTTGGTATTGGCTTGGAAAAAGGTGGTTTCAAGGATGTCTCAATCATGAAAATATGGGCCCGTTATGTTACAAAGTTATTCGCTCTAAATACTTCGCGGATGCTGCATGTACTGTATTGCGGCTTGACCAGATCATCATGGCAAAGCCAGCTGGAGGCCCAAGGAGAGATGTTCAGCCTGGAATGGACGAAGATTAGTTTGCTACCCTGCTATATTTTCCATGTGTACCGTGTTCTCAGGTTTTTCCGAAGTAGACCTCTTATCTATCTTATTTATAAGTCTGGTTCAGTAGAAAGGTTTTCGGGCCTGGACAGCTCGTTTGGGTGGGGGCTGCATGGTTGAGCTGATTTTATGCGGGGTATGTGTTTGTGAGTTTCTCTCTGTGTCTTATTATCATGCCAATGTATCAAAATGGTTAGCTCTAAAAAGGCTTTGTTCTTTCAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13899#2 ------------------------------------------------------------
consensus_13899#3 ------------------------------------------------------------
consensus_13899#0 ACTCGCGCATCGCCCGCCCACACTAGGGTTTTTGATCCGCTTCGCCGCCGCCGCCGCCGC 60
consensus_13899#1 ------------------------------------------------------------
consensus_13899#2 ------------------------------------------------------------
consensus_13899#3 ------------------------------------------------------------
consensus_13899#0 CGCCTCCTTCTCCTCCTCCTCCGCGGCCGTCACCGATCTCATCCGCCGCCGACGATGGTG 120
consensus_13899#1 ------------------------------------------------------------
consensus_13899#2 ------------------------------------------------------------
consensus_13899#3 ------------------------------------------------------------
consensus_13899#0 GGGCTGGGCGCGATGCCGGGGTACGGGATCCAGTCCATGCTCAAGGAGGGGCACAAGCAC 180
consensus_13899#1 ------------------------------------------------------------
consensus_13899#2 ------------------------------------------------------------
consensus_13899#3 ------------------------------------------------------------
consensus_13899#0 CTCTCCGGCCTCGATGAGGCCGTCCTCAAGAACATCGACGCCTGCCGCGAGCTCTCCGCC 240
consensus_13899#1 ------------------------------------------------------------
consensus_13899#2 ------------------------------------------------------------
consensus_13899#3 ------------------------------------------------------------
consensus_13899#0 ATCACCCGCACCTCCCTCGGCCCCAACGGAATGAATAAGATGGTCATTAACCATCTCGAC 300
consensus_13899#1 ------------------------------------------------------------
consensus_13899#2 ------------------------------------------------------------
consensus_13899#3 ------------------------------------------------------------
consensus_13899#0 AAGCTCTTTGTCACGAACGATGCTGCAACAATTGTGAATGAGCTCGAGGTCCAGCACCCT 360
consensus_13899#1 ------------------------------------------------------------
consensus_13899#2 ------------------------------------------------------------
consensus_13899#3 ------------------------------------------------------------
consensus_13899#0 GCTGCTAAGATCCTGGTACTAGCTGGCAGGGCTCAGCAGGAGGAAATCGGTGATGGAGCT 420
consensus_13899#1 ------------------------------------------------------------
consensus_13899#2 ------------------------------------------------------------
consensus_13899#3 ------------------------------------------------------------
consensus_13899#0 AACCTCACCATATCTTTTGCTGGTGAACTGCTTGAGAAGGCCGAGGAGCTTATCAGGATG 480
consensus_13899#1 ------------------------------------------------------------
consensus_13899#2 ------------------------------------------------------------
consensus_13899#3 ------------------------------------------------------------
consensus_13899#0 GGGTTGCATCCAAGTGAGATCATCATTGGCTACACCAAGGCCATTAATAAGACTGTTGAG 540
consensus_13899#1 ------------------------------------------------------------
consensus_13899#2 ------------------------------------------------------------
consensus_13899#3 ------------------------------------------------------------
consensus_13899#0 ATCTTGGAAGATCTTGTGGAGAAAGGTTCAGAGAACATGGATGTGAGGAACAAGGAGGAG 600
consensus_13899#1 ------------------------------------------------------------
consensus_13899#2 ------------------------------------------------------------
consensus_13899#3 ------------------------------------------------------------
consensus_13899#0 GTTGTGTTGCTGATGAGATCTGCAGTTGCGAGCAAGCAATTCGGTCAGGAGGATATATTG 660
consensus_13899#1 ------------------------------------------------------------
consensus_13899#2 ------------------------------------------------------------
consensus_13899#3 ------------------------------------------------------------
consensus_13899#0 TGCCCTCTTGTGGCTGATGCCTGTATGCAAGTCTGCCCGAAAAATCCTGCTAACTTCAAC 720
consensus_13899#1 ------------------------------------------------------------
consensus_13899#2 ------------------------------------------------------------
consensus_13899#3 ------------------------------------------------------------
consensus_13899#0 GTTGACAATGTTAGAGTTGCGAAACTACTTGGAGGTGGTTTGCACAACTCTTCTGTAGTC 780
consensus_13899#1 ------------------------------------------------------------
consensus_13899#2 ------------------------------------------------------------
consensus_13899#3 ------------------------------------------------------------
consensus_13899#0 CGGGGGATGGTTCTGAAAAATGACGCTGTTGGGAGCATCAAAAGGGTGGAGAAGGCAAAG 840
consensus_13899#1 ------------------------------------------------------------
consensus_13899#2 ------------------------------------------------------------
consensus_13899#3 ------------------------------------------------------------
consensus_13899#0 ATTGCAGTATTTGCTGGCGGTGTTGATACTTCTGCAACTGAAACCAAGGGAACTGTTTTG 900
consensus_13899#1 ------------------------------------------------------------
consensus_13899#2 ------------------------------------------------------------
consensus_13899#3 ------------------------------------------------------------
consensus_13899#0 ATACATTCTGCTGAGCAGCTAGAAAACTATGCTAAGACTGAGGAAGCTAAGGTGGAGGAG 960
consensus_13899#1 ------------------------------------------------------------
consensus_13899#2 ------------------------------------------------------------
consensus_13899#3 ------------------------------------------------------------
consensus_13899#0 CTTATCAAAGCTGTTGCTGACTCGGGTGCAAAGGTTATTGTCAGTGGAGCAGCAGTTGGC 1020
consensus_13899#1 ------------------------------------------------------------
consensus_13899#2 ------------------------------------------------------------
consensus_13899#3 ------------------------------------------------------------
consensus_13899#0 GACATGGCACTGCATTTCTGTGAGCGTTACAAGCTAATGGTTCTTAGAATCAGTTCAAAA 1080
consensus_13899#1 ------------------------------------------------------------
consensus_13899#2 ------------------------------------------------------------
consensus_13899#3 ------------------------------------------------------------
consensus_13899#0 TTTGAACTGAGAAGATTTTGCCGTACTACAGGGTCCATTGCACTTTTGAAACTCAGCCGA 1140
consensus_13899#1 ------------------------------------------------------------
consensus_13899#2 ------------------------------------------------------------
consensus_13899#3 ------------------------------------------------------------
consensus_13899#0 CCAAATGCGGATGAATTAGGATATGCAGACTCTGTTTCGGTGGAAGAGATCGGTGGTGCC 1200
consensus_13899#1 ------------------------------------------------------------
consensus_13899#2 ------------------------------------------------------------
consensus_13899#3 ------------------------------------------------------------
consensus_13899#0 CGAGTAACTGTTGTCAAGAATGAAGAAGGTGGAAACTCAGTGGCTACGGTTGTCTTAAGA 1260
consensus_13899#1 ----------------------------------------------------CGATCTCA 8
consensus_13899#2 -----CACCGATAGTATATTGGATGATCTTGAAAGAGCTGTTGATGATGGTGTGAATAGT 55
consensus_13899#3 ------------------------------------------------------------
consensus_13899#0 GGCAGCACCGATAGTATATTGGATGATCTTGAAAGAGCTGTTGATGATGGTGTGAATACT 1320
consensus_13899#1 TCCGCCGCCGACGATGGTGGGGCTGGGCGCGATGCCGGGGTACGGGATCCAGTCCATGCT 68
consensus_13899#2 TACAAGTCAATGTGCAGGGATAGTCGGATTATTCCTGGAGCTGCTGCAACAGAAATAGA- 114
consensus_13899#3 -------------------------------TCACGGAAGTCGTGCCCACGAAACAAAT- 28
consensus_13899#0 TACAAGTCAATGTGCAGGGATAGTCGGATTATTCCTGGAGCTGCTGCAACAGAAATAGA- 1379
consensus_13899#1 --CAAGGAGGGGCACAAGCACCTCTCCGGCCTCGATGAGGCCGTCCTCAAGAACATCGAC 126
* * * * * *
consensus_13899#2 ATTGGCAAGGAGA-TTGAAGGAATTTTC-----TCTGA-AGGAAACAGGGTTGGACCAGT 167
consensus_13899#3 ACTTGCCAGGAAACTTCACGGAATTCTT-----TATAACAGGAACCAGGGTGGGACCCCT 83
consensus_13899#0 ATTGGCAAGGAGA-TTGAAGGAATTTTC-----TCTGA-AGGAAACAGGGTTGGACCAGT 1432
consensus_13899#1 GCCTGCCGCGAGCTCTCCGCCATCACCCGCACCTCCCTCGGCCCCAACGGTGAGGCCCCC 186
** ** * * * * * *** * **
consensus_13899#2 ATGCCATTGC-AAAATTTGCTGAAAGTTTTGAAATG---GTTCCAAGAACCCTGGCTGAA 223
consensus_13899#3 AAGTCAATACCAAAACGTGCTCAAAATTTTGAAATG---GTTCCAAAACCCCCGGCTGAA 140
consensus_13899#0 ATGCCATTGC-AAAATTTGCTGAAAGTTTTGAAATG---GTTCCAAGAACCCTGGCTGAA 1488
consensus_13899#1 TTCCCTCTCC--TTCCCCGCTCTGTGCTCCGGCGTCTTCGTTGCCCGCGTTTTGATCCGA 244
* * * *** * * * *** * * *
consensus_13899#2 AATGCT--GGGCTTAGTGCTATGG-AGATAATATCTTCCCTTTATGCTGAACATGCTGGT 280
consensus_13899#3 AATGCT--GGGGTTAGTGCTAGGG-AGATGATATATTTCCTTTTTGCTGAACCTGGTGGT 197
consensus_13899#0 AATGCT--GGGCTTAGTGCTATGG-AGATAATATCTTCCCTTTATGCTGAACATGCTGGT 1545
consensus_13899#1 GAAGTTTGGGATCTAGCGATGTGCCACGGCGGACTCGATCGATATATCAAATCTGGGGAG 304
* * * ** *** * * * * * * * * ** ** *
consensus_13899#2 GGGAATACGAAAGTTGGTATTGACTTGGAAGAAGGTGGTTGCAAGGATGTCTCAATCATG 340
consensus_13899#3 GGGAGTACGAAAGTTGGTATTGGCTTGGAAAAAGGTGGTTTCAAGGATGTCTCAATCATG 257
consensus_13899#0 GGGAATACGAAAGTTGGTATTGACTTGGAAGAAGGTGGTTGCAAGGATGTCTCAATCATG 1605
consensus_13899#1 TGTCGCGCGCGTGATG-TGGTGGTACGGTAGAAA-TGGTT---AGGCTATGGCCCTTGTT 359
* ** * ** * ** ** * ** ***** *** * * * * *
consensus_13899#2 AAAATATGGGACCTTTATGTTACAAAGTTATTCGCTCTAAA-ATACTCCGCGGATGCTGC 399
consensus_13899#3 AAAATATGGGCCCGTTATGTTACAAAGTTATTCGCTCTAAA--TACTTCGCGGATGCTGC 315
consensus_13899#0 AAAATATGGGACCTTTATGTTACAAAGTTATTCGCTCTAAA-ATACTCTGCGGATGCTGC 1664
consensus_13899#1 GCTGCATCCA--CAGTGTGTTAATTATTTAGCTGCAGAAAAGATGAGCTTTTGTTTGTTC 417
** * * ***** * *** ** *** * * * * *
consensus_13899#2 ATGTACTGTACTGCG-GGTTGACCAGATCATCATGGCAAAGCCAGCAGGAGGGC--CAAG 456
consensus_13899#3 ATGTACTGTATTGCG-GCTTGACCAGATCATCATGGCAAAGCCAGCTGGAGGCC--CAAG 372
consensus_13899#0 ATGTACTGTACTGCG-GGTTGACCAGATCATCATGGCAAAGCCAGCAGGAGGGC--CAAG 1721
consensus_13899#1 AACCCTTAGGTAATGAGGTTGAAGACAGTATTGTGATGAAGTCGTTAGTAGTGTTTCACA 477
* * * * **** * * ** ** *** * * ** **
consensus_13899#2 GAGAGATGCTCAGCCTGGAATGGACGAAGATTAGTTTGCTACCGTGCTATATTTTCCATG 516
consensus_13899#3 GAGAGATGTTCAGCCTGGAATGGACGAAGATTAGTTTGCTACCCTGCTATATTTTCCATG 432
consensus_13899#0 GAGAGATGCTCAGCCTGGAATGGACGAAGATTAGTTTGCTACCGTGCTATATTTTCCATG 1781
consensus_13899#1 TTTAGCTAATTTAA-TGGTGCAGAGAAAAGTTGTGGATCTTTTGGACACTAAAAAAT-TG 535
** * * *** ** ** ** ** * ** **
consensus_13899#2 TTTACCGTGTTCTGAGGTTTCTC-CGAAGTAGACCTCTTTTTTTATCTTATTTATAAGTT 575
consensus_13899#3 TGTACCGTGTTCTCAGGTTTTTC-CGAAGTAGACCTCTTATCT-ATCTTATTTATAAGTC 490
consensus_13899#0 TTTACCGTGTTCTGAGGTTTCTC-CGAAGTAGACCTCTTTTTT-ATCTTATTTATAAGTT 1839
consensus_13899#1 TGGTGCCTGTCTTGCGGTTTTAGGTTGAGTTCAGTTAATTTTTCAGCG-ATTTATTGTTA 594
* * *** * ***** *** * * * * * * * ****** *
consensus_13899#2 TGGTTCAGTAGGAAGATTTTGGTGCCTGGACAGCACGTTTGGGTGGGG---GCTGCATGG 632
consensus_13899#3 TGGTTCAGTAGAAAGGTTTTCGGGCCTGGACAGCTCGTTTGGGTGGGG---GCTGCATGG 547
consensus_13899#0 TGGTTCAGTAGGAAGATTTTGGTGCCTGGACAGCACGTTTGGGTGGGG---GCTGCATGG 1896
consensus_13899#1 GAGGCCAGCAGTAAACAT---GCTCCTGCGCTACATTTTTCTGTGATGTATAATATCTGA 651
* *** ** ** * * **** * * *** *** * * **
consensus_13899#2 TTGAGCTGATTTTCTGCGGGGTATGTGTTTGTGAGTTTGTCTCGGTGTATTATTATCATG 692
consensus_13899#3 TTGAGCTGATTTTATGCGGGGTATGTGTTTGTGAGTTTCTCTCTGTGTCTTATTATCATG 607
consensus_13899#0 TTGAGCTGATTTTCTGCGGGGTATGTGTTTGTGAGTTTGTCTCGGTGTATTATTATCATG 1956
consensus_13899#1 CAGATTCATGTTAGTATCAGAAGCTAGTTTCTTAACA-GCATCGCTGTTTTGTTTTGGTA 710
** ** * * **** * * ** *** ** ** * *
consensus_13899#2 CCAATGTATCAAAAG-TGGTTAGCTCTAAAAAGGATTTGTTCTTTCAAAAAAAAAAGGA- 750
consensus_13899#3 CCAATGTATCAAAA--TGGTTAGCTCTAAAAAGGCTTTGTTCTTTCAAAAAAAAAAAA-- 663
consensus_13899#0 CCAATGTATCAAAA--TGGTTAGCTCTAAAAAGGATTTGTTCTTTCAGATTTGTATGCCG 2014
consensus_13899#1 GGAATGAATAAGATGGTCATTAACCATCTCGACAAGCTCTTTGTCACGAACGATGCTGC- 769
**** ** * * * *** * * * * ** * *
consensus_13899#2 ----------------------------------------------------------
consensus_13899#3 ----------------------------------------------------------
consensus_13899#0 AAGTATCTTTTTTCTTTGTTGCGCTGAACTCTTTTTTGTTCTACGGTATGATGAATCA 2072
consensus_13899#1 ----------------------------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||