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Oryza sativa
cluster # 13903 cluster # 13903       Sequences # 14       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_13903#0 length = 790 sequences # 9  
consensus_13903#1 length = 682 sequences # 1  
consensus_13903#2 length = 637 sequences # 4  

consensusID : consensus_13903#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 9
consensus length = 790
fasta sequence
                              [GCAAGGGGAAGGATTAGGAAGGAGAAGACGAAGGGGAAAGGAGGAGAGGAGCGAAACCCTAGGGCC--AGGCAGGCATCTCCCTCCCGGGATCTCGACGCCCAGCAACCGGAAGCCATCGGCATGGCTATGGCGCTGCGCTCTCTCGCCGGGAAGCTCAGGCCGCCGGTGGCAGCCACCCTCCGCCGGGCGCCGGCGT-CGAGCTCCTTCCACCCCGAGGAGAAGCTGAGCAGCATGACATCTTCTAAGACTAAAACTCCTGTTGATGACAACTGTTTTGAATTGCTTGGGGACAAGTATTTTGAAGAGCGGTCTCGGATTTTTGCCCAATTGGTTAAGGAAGATGCACGGCGCACGGAGGAGCAGATCGCTGCATACAAGAAGC-TGAAGAGGGC-AATGGTTGC-TTCTAGC-TTGGGCGCAGCG-A-TTGGAATTTTTGCCCTTCTCATCAGATATAACGAGTAGTATATCTGATACTGTTGTCTAGTACTAGTCTCTTGAGTTTTAGATGATCACCAGCTGGCCTAGTGCCTTTATCTATTTTAGAGCACTCTGTTTATCTGATTATGCAGTTAATTTTGGTGTTGCACACTGGTACTGCTATATCGCTGTCCCAGAATATTGGAGGAACTTAATTAAGAGCCCTCTTTGCTTGTGTATCATTGAACATGGTAAGTATCCCTGTCATGTATTTTCTTCTTCAAAAAAAAAATCATCCTTTGTATGCTACTGTCGTTCATGCGTGCCTATGCAACAGTTATGAGCGTGATTTATNCCAAAAAAAAAAAAAAAAAAA]

[+] EMBL AK120248             [GCAAGGGGAAGGATTAGGAAGGAGAAGACGAAGGGGAAAGGAGGAGAGGAGCGAAACCCTAGGGCC  AGGCAGGCATCTCCCTCCCGGGATCTCGACGCCCAGCAACCGGAAGCCATCGGCATGGCTATGGCGCTGCGCTCTCTCGCCGGGAAGCTCAGGCCGCCGGTGGCAGCCACCCTCCGCCGGGCGCCGGCGT CGAGCTCCTTCCACCCCGAGGAGAAGCTGAGCAGCATGACATCTTCTAAGACTAAAACTCCTGTTGATGACAACTGTTTTGAATTGCTTGGGGACAAGTATTTTGAAGAGCGGTCTCGGATTTTTGCCCAATTGGTTAAGGAAGATGCACGGCGCACGGAGGAGCAGATCGCTGCATACAAGAAGC TGAAGAGGGC AATGGTTGC TTCTAGC TTGGGCGCAGCG A TTGGAATTTTTGCCCTTCTCATCAGATATAACGAGTAGTATATCTGATACTGTTGTCTAGTACTAGTCTCTTGAGTTTTAGATGATCACCAGCTGGCCTAGTGCCTTTATCTATTTTAGAGCACTCTGTTTATCTGATTATGCAGTTAATTTTGGTGTTGCACACTGGTACTGCTATATCGCTGTCCCAGAATATTGGAGGAACTTAATTAAGAGCCCTCTTTGCTTGTGTATCATTGAACATGGTAAGTATCCCTGTCATGTATTTT                                                                                                     ]
[+] EMBL OSS11939A            [                   AGGAGAAGACGAAGGGGAAAGGAGGAGAGGAGCGAAACCCTAGGGCC  AGGCAGGCATCTCCCTCCCGGGATCTCGACGCCCAGCAACCGGAAGCCATCGGCATGGCTATGGCGCTGCGCTCTCTCGCCGGGAAGCTCAGGCCGCCGGTGGCAGCCACCCTCCGCCGGGCGCCGGCGTNCGAGCTCCTTCCACCCCGAGGAGAAGCTGAGCAGCATGACATCTTCTAAGACTAAAACTCCTGTTGATGACAACTGTTTTGAATTGCTTGGGGACAAGTATTTTGAAGAGCGGTCTCGGATTTTTGCCCAATTGGTTAAGGAAGATGCACGGCGCACGGAGGAGCAGATCGCTGCAT                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL C28050               [                    GGAGAAGACGAAGGGGAAAGGAGGAGAGGAGCGAAACCCTAGGGCC  AGGCAGGCATCTCCCTCCCGGGATCTCGACGCCCAGCAACCGGAAGCCATCGGCATGGCTATGGCGCTGCGCTCTCTCGCCGGGAAGCTCAGGCCGCCGGTGGCAGCCACCCTCCGCCGGGCGCCGG GT CGAGCTCCTTCCACCCCGAGGAGAAGCTGAGCAGCATGACATCTTCTAAGACTAAAACTCCTGTTGATGACAACTGTTTTGAATTGCTTGGGGACAAGTATTTTGAAGAGCGGTCTCGGATTTTTGCCCAATTGGTTAAGGANGATTCACGGCGCACGGNGGAGCAGATCGCTGCATACAAGAAGCTTGNAGAGGGCAAATGGNTGCTTTCTAGCTTTGGGCGCNG G A TT                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL OSS4375A             [                          GACGAAGGGGAAAGGAGGAGAGGAGCGAAACCCTAGGGCC  AGGCAGGCATCTCCCTCCCGGGATCTCGACGCCCAGCAACCGGAAGCCATCGGCATGGCTATGGCGCTGCGCTCTCTCGCCGGGAAGCTCAGGCCGCCGGTGGCAGCCACCCTCCGNCGGGCGCCGGCGT CGAGCTCCTTCCACCCCGAGGAGAAGCTGAGCAGCATGACATCTTCTAAGACTAAAACTCCTGTTGATGACAACTGTTTTGAATTGCTTGGGGACAAGTATTTTGAAGAGCGGTCTCGGATTTTTGCCCAATTGGTTAAGGAAGATGCACGGCGCACGGAGGAGCAGATCGCTGCATACAAGAAGT TGAAGAGGGC AATGGTTGC TTCTAG  TTGGGCGAAG G A TTGGAATTTTTGNCCTTNTCATCAGATATAACGGGAAG ATATCTGAT                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL OSS4383A             [                          GACGAAGGGGAAAGGAGGAGAGGAGCGAAACCCTAGGGCC  AGGCAGGCATCTCCCTCCCGGGATCTCGACGCCCAGCAACCGGAAGCCATCGGCATGGCTATGGCGCTGCGCTCTCTCGCCGGGAAGCTCAGGCCGCCGGTGGCAGCCACCCTCCGCCGGGCGCCGGCGT CGAGCTCCTTCCACCCCGAGGAGAAGCTGAGCAGCATGACATCTTCTAAGACTAAAACTCCTGTTGATGACAACTGTTTTGAATTGCTTGGGGACAAGTATTTTGAAGAGCGGTCTCGGATTTTTGCCCAATTGGTTAAGGAAGATGCACGGCGCACGGAGGAGCAGATCGCTGCATACAAGAAGC TGAAGAGGGC AATGGTTGC TTCTAGC TTGGGCGAAG G ATTTGGAATTTTTGCCCTTCTCATCAGNTATAACGNGTAG ATATCT                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL OSS3285A             [                          GACGAAGGGGAAAGGAGGAGAGGAGCGAAACCCTAGGGCC  AGGCAGGCATCTCCCTCCCGGGATCTCGACGCCCAGCAACCGGAAGCCATCGGCATGGCTATGGCGCTGCGCTCTCTCGCCGGGAAGCTCAGGCCGCCGGTGGCAGCCACCCTCCGCCGGGCGCCGGCGT CGAGCTCCTTCCACCCCGAGGAGAAGCTGAGCAGCATGACATCTTCTAAGACTAAAACTCCTGTTGATGACAACTGTTTTGAATTGCTTGGGGACAAGTATTTTGAAGAGCGGTCTCGGATTTTTGCCCAATTGGTTAAGGAAGATGCACGGCGCACGGAGGAGCAGATCGNTGCATACAAGAAGT TGAAGAGGGC AATGGTTGC                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL AU092819             [                                                            AGGGCCCAAGGCAGGCATCTCCTTCCCGGGATCTCGACGCCCAGCAACCGGAAGCCATCGGCATGGCTATGGC NTGCGCTCTCTCGCCGGGAAGCTCAGNCCGCCGGTGGCAGCCACCCTCCGCCGGGCGCCGGCGT CGAGCTCCTTCCACCCCGAGGAGAAGCTGAGCAGCATGACATCTTCTAAGACTAAAACTCCTGTTGATGACAACTGTTTTGAATTGCTTGGGGACAAGTATTTTGAAGAGCGGTCTCGGATTTTTGCCCAATTGGTTAAGGAAGATGCACGGCGCACGGAGGAGCAGATCGCTGCATACAAGAAGC TGAAGAGGGC AATGGTTGC TTCTAGC TTGGGCGCAGCG A TTGGAATTTTTGCCCTTCTCATCAGATATAACGAGTAGTATATCTGATACTGTTGTCTAGTACTAGTCTCTTGAGTTTTAGATGATCACCAGCTGGCCTAGTGCCTTTATCTATTTTAGAGCACTCTGTTTATCTGATTATGCAGTTAATTTTGGTGTTGCACACTGGTACTGCTATATCGCTGTCCCAGAATATTGGAGGAACTTAATTAAGAGCCCTCTTTGCTTGTGTATCATTGAACATGGTAAGTATCCCTGTCATGTATTTTCTTCTTCAAAAAAAAAA                                                                                    ]
[+] EMBL BE230713             [                                                               GCC  AGGCAGGCATCTCCCTCCCGGGATCTCGACGCCCAGCAACCGGAAGCCATCGGCATGGCTATGGCGCTGCGCTCTCTCGCCGGGAAGCTCAGGCCGCCGGTGGCAGCCACCCTCCGCCGGGCGCCGGCGT CGAGCTCCTTCCACCCCGAGGAGAAGCTGAGCAGCATGACATCTTCTAAGACTAAAACTCCTGTTGATGACAACTGTTTTGAATTGCTTGGGGACAAGTATTTTGAAGAGCGGTCTCGGATTTTTGCCCAATTGGTTAAGGAAGATGCACGGCGCACGGAGGAGCAGATCGCTGCATACAAGAAGC TGAAGAGGGC AATGGTTGC TTCTAGC TTSGGCGCA CGAA TTGGAATTTTTGCCCTTCTCATCAGATATAACGAGTAGTATATCTGATACTGTTGTCTAGTACTAGTCTCTTGAGWTTTAGATGATCACCAGCTGGCCTAGTG CTTTATCTATTTTAGAGCACTCTGTTTATCTGATTATGCAGTTAATTTTGGT                                                                                                                                                                                                                     ]
[+] EMBL AU174333             [                                                                                                                                                                                                                                                                                                                                                                     GAGGAGCAGATCGCTGCATACAAGAAGC TGAAGAGGGC AATGGTTGC TTCTAGC TTGGGCGCAGCG A TTGGAATTTTTGCCCTTCTCATCAGATATAACGAGTAGTATATCTGATACTGTTGTCTAGTACTAGTCTCTTGAGTTTTAGATGATCNCCAGCTGGCCTAGTGCCTTTATNTATTTTAGAGCNCTCTGTTTATCTGATTATGCAGTTAATTTTGGTGTTGCACACTGGTACTGCTATATCGCTGTCCCAGAATATTGGAGGAACTTAATTAAGAGCCCTCTTTGCTTGTGTATCATTGAACATGGTAAGTATCCCTGTCATGTATTTTNTTNTTCAAGACAAATTTCATCCTTTGTATGCTACTGTCGTTCATGCGTGCCTATGCAACAGTTATGAGCGTGATTTATNCCAAAAAAAAAAAAAAAAAAA]


>consensus_13903#0 GCAAGGGGAAGGATTAGGAAGGAGAAGACGAAGGGGAAAGGAGGAGAGGAGCGAAACCCT AGGGCCAGGCAGGCATCTCCCTCCCGGGATCTCGACGCCCAGCAACCGGAAGCCATCGGC ATGGCTATGGCGCTGCGCTCTCTCGCCGGGAAGCTCAGGCCGCCGGTGGCAGCCACCCTC CGCCGGGCGCCGGCGTCGAGCTCCTTCCACCCCGAGGAGAAGCTGAGCAGCATGACATCT TCTAAGACTAAAACTCCTGTTGATGACAACTGTTTTGAATTGCTTGGGGACAAGTATTTT GAAGAGCGGTCTCGGATTTTTGCCCAATTGGTTAAGGAAGATGCACGGCGCACGGAGGAG CAGATCGCTGCATACAAGAAGCTGAAGAGGGCAATGGTTGCTTCTAGCTTGGGCGCAGCG ATTGGAATTTTTGCCCTTCTCATCAGATATAACGAGTAGTATATCTGATACTGTTGTCTA GTACTAGTCTCTTGAGTTTTAGATGATCACCAGCTGGCCTAGTGCCTTTATCTATTTTAG AGCACTCTGTTTATCTGATTATGCAGTTAATTTTGGTGTTGCACACTGGTACTGCTATAT CGCTGTCCCAGAATATTGGAGGAACTTAATTAAGAGCCCTCTTTGCTTGTGTATCATTGA ACATGGTAAGTATCCCTGTCATGTATTTTCTTCTTCAAAAAAAAAATCATCCTTTGTATG CTACTGTCGTTCATGCGTGCCTATGCAACAGTTATGAGCGTGATTTATNCCAAAAAAAAA AAAAAAAAAA



consensusID : consensus_13903#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 682
fasta sequence
                              [CCCNTAGGGCCAGGGCAGGCATTCTCCCTCCCGGGATCTCGACGCCCAGCAACCGGAAGCCATCGGCATGGCTATGCNTGCGCTCTCTCGCCGGGAAGCTCAGGCCGCCGGTGGCAGCCACCCTCCGCCGGGCGCCGGCGTCGAGCTCCTTCCACCCCGAGGAGAAGCTGAGCAGCATGACATCTTCTAAGACTAAAACTCCTGTTGATGACAACTGTTTTGAATTGCTTGGGGACAAGTATTTTGAAGAGCGGTCTCGGATTTTTGCCCAATTGGTTAAGGAAGATGCACGGCGCACGGAGGAGCAGATCGCTGCATACAAGAAGCTGAAGAGGGCAATGGTTGCTTCTAGCTTGGGCGCAGCGATTGGAATTTTTGCCCTTCTCATCAGATATAACGAGTAGTATATCTGATACTGTTGTCTAGTACTAGTCTCTTGAGTTTTAGATGATCACCAGCTGGCCTAGTGCCTTTATCTATTTTAGAGCACTCTGTTTATCTGATTATGCAGTTAATTTTGGTGTTGCACACTGGTACTGCTATATCGCTGTCCCAGAATATTGGAGGAACTTAATTAAGAGCCCTCTTTGCTTGTGTATCATTGAACATGGTAAGTATCCCTGTCATGTATTTTCTTCTTCAAGACAAATTTCATCCTTTGTATGCTAAAAAAAAAAAAAAA]

[+] EMBL AU088669             [CCCNTAGGGCCAGGGCAGGCATTCTCCCTCCCGGGATCTCGACGCCCAGCAACCGGAAGCCATCGGCATGGCTATGCNTGCGCTCTCTCGCCGGGAAGCTCAGGCCGCCGGTGGCAGCCACCCTCCGCCGGGCGCCGGCGTCGAGCTCCTTCCACCCCGAGGAGAAGCTGAGCAGCATGACATCTTCTAAGACTAAAACTCCTGTTGATGACAACTGTTTTGAATTGCTTGGGGACAAGTATTTTGAAGAGCGGTCTCGGATTTTTGCCCAATTGGTTAAGGAAGATGCACGGCGCACGGAGGAGCAGATCGCTGCATACAAGAAGCTGAAGAGGGCAATGGTTGCTTCTAGCTTGGGCGCAGCGATTGGAATTTTTGCCCTTCTCATCAGATATAACGAGTAGTATATCTGATACTGTTGTCTAGTACTAGTCTCTTGAGTTTTAGATGATCACCAGCTGGCCTAGTGCCTTTATCTATTTTAGAGCACTCTGTTTATCTGATTATGCAGTTAATTTTGGTGTTGCACACTGGTACTGCTATATCGCTGTCCCAGAATATTGGAGGAACTTAATTAAGAGCCCTCTTTGCTTGTGTATCATTGAACATGGTAAGTATCCCTGTCATGTATTTTCTTCTTCAAGACAAATTTCATCCTTTGTATGCTAAAAAAAAAAAAAAA]


>consensus_13903#1 CCCNTAGGGCCAGGGCAGGCATTCTCCCTCCCGGGATCTCGACGCCCAGCAACCGGAAGC CATCGGCATGGCTATGCNTGCGCTCTCTCGCCGGGAAGCTCAGGCCGCCGGTGGCAGCCA CCCTCCGCCGGGCGCCGGCGTCGAGCTCCTTCCACCCCGAGGAGAAGCTGAGCAGCATGA CATCTTCTAAGACTAAAACTCCTGTTGATGACAACTGTTTTGAATTGCTTGGGGACAAGT ATTTTGAAGAGCGGTCTCGGATTTTTGCCCAATTGGTTAAGGAAGATGCACGGCGCACGG AGGAGCAGATCGCTGCATACAAGAAGCTGAAGAGGGCAATGGTTGCTTCTAGCTTGGGCG CAGCGATTGGAATTTTTGCCCTTCTCATCAGATATAACGAGTAGTATATCTGATACTGTT GTCTAGTACTAGTCTCTTGAGTTTTAGATGATCACCAGCTGGCCTAGTGCCTTTATCTAT TTTAGAGCACTCTGTTTATCTGATTATGCAGTTAATTTTGGTGTTGCACACTGGTACTGC TATATCGCTGTCCCAGAATATTGGAGGAACTTAATTAAGAGCCCTCTTTGCTTGTGTATC ATTGAACATGGTAAGTATCCCTGTCATGTATTTTCTTCTTCAAGACAAATTTCATCCTTT GTATGCTAAAAAAAAAAAAAAA



consensusID : consensus_13903#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 637
fasta sequence
                              [GCGGAAGGGGAAGGGAGGGGAAGGGGAAGGAGAAGGAGAAAGGAGAAGATGAAAGCGAGCGAAACCCTAGCCTCGCTCCCTCCCGAGATCTTGACGCCCGCAACCGGAAGCCGTCGGCATGGCTAAGGCGCTGCGCTCTCTCGCCGGGAAGCTCAGGCCGCT--GGTCGC--A-TCCACCCT-CCGCC-GGGCGCC--GGCGTCGCGCTCCCTCCACCCCGAGGATAAGTTGAGTGGCAACACAAATCCTAAGATTAAGCCCCTTACTTTCCATAATGCTGAGGAGGACGCTCGCATTATGTTTGAGAACATCAATGAGAGAGCACGAGTGGTAGCGGAACCGATGGTGGCATTTCGGAGGAGGCAAAACAGGATTGTGATTGCGGCGGCTGCTTCTGGATGCGTTGTTGGTACTGTTGTGATGGGCGTTTTTCTTTGTCAGGATTGAAACAGCTAGATAAGAGAACCATGCATCGACTGCCGCTATTATCATTATAACTATGACTTTTAATTAAGACTTTCTTATGAAACCTCTAGCGTGCATGTTTTTTTGTAAGCAAACGTGTATTGTTAATTACACTGATGTTACTTTGATATGCATGGTGATAAAAACAGAGTACTATATTTTATATGGTTTTCTTAAAAA]

[+] EMBL AK121012             [GCGGAAGGGGAAGGGAGGGGAAGGGGAAGGAGAAGGAGAAAGGAGAAGATGAAAGCGAGCGAAACCCTAGCCTCGCTCCCTCCCGAGATCTTGACGCCCGCAACCGGAAGCCGTCGGCATGGCTAAGGCGCTGCGCTCTCTCGCCGGGAAGCTCAGGCCGCT  GGTCGC  A TCCACCCT CCGCC GGGCGCC  GGCGTCGCGCTCCCTCCACCCCGAGGATAAGTTGAGTGGCAACACAAATCCTAAGATTAAGCCCCTTACTTTCCATAATGCTGAGGAGGACGCTCGCATTATGTTTGAGAACATCAATGAGAGAGCACGAGTGGTAGCGGAACCGATGGTGGCATTTCGGAGGAGGCAAAACAGGATTGTGATTGCGGCGGCTGCTTCTGGATGCGTTGTTGGTACTGTTGTGATGGGCGTTTTTCTTTGTCAGGATTGAAACAGCTAGATAAGAGAACCATGCATCGACTGCCGCTATTATCATTATAACTATGACTTTTAATTAAGACTTTCTTATGAAACCTCTAGCGTGCATGTTTTTTTGTAAGCAAACGTGTATTGTTAATTACACTGATGTTACTTTGATATGCATGGTGATAAAAACAGAGTACTATATTTTAT                ]
[+] EMBL CF329670             [                                                          GCGAAACCCTAGCCTCGCTCCCTCCCGAGATCTTGACGCCCGCAACCGGAAGCCGTCGGCATGGCTAAGGCGCTGCGCTCTCTCGCCGGGAAGCTCAGGCCGCT  GGTCGC  A TCCACCCT CCGCC GGGCGCC  GGCGTCGCGCTCCCTCCACCCCGAGGATAAGTTGAGTGGCAACACAAATCCTAAGATTAAGCCCCTTACTTTCCATAATGCTGAGGAGGACGCTCGCATTATGTTTGAGAACATCAATGAGAGAGCACGAGTGGTAGCGGAACCGATGGTGGCATTTCGGAGGAGGCAAAACAGGATTGTGATTGCGGCGGCTGCTTCTGGATGCGTTGTTGGTACTGTTGTGATGGGCGTTTTTCTTTGTCAGGATTGAAACAGCTAGATAAGAGAACCATGCATCGACTGCCGCTATTATCATTATAACTATGACTTTTAATTAAGACTTTCTTATGAAACCTCTAGCGTGCATGTTTTTTTGTAAGCAAACGTGTATTGTTAATTACACTGATGTTACTTTGATATGCATGGTGATAAAAACAGAGTACTATATTTTAaa               ]
[+] EMBL BI801707             [                                                                                                                                                             CCGCTTGGGTCGCCAAGCCCACCCTCCCGCCGGGGCGCCCGGGCGTCGCG TCCCTCCACCCCGAGGATAA TTGAGTGGCAACAC AATCCTAAGATTAAGCCCCTTACTTTCCATAATGCTGAGGAGGACGCTCGCATTATGTTTGAGAACATCAATGAGAGAGCACGAGTGGTA CGGAACCGATGGTGGCATTTCGGAGGAGGCCAAACAGGATTGTGATTGCGGCGGCTGCTTCTGGATGCGTTGTTGGTACTGTTGTGATGGGCGTTTTTCTTTGTCAGGATTGAAACAGCTAGATAAGAGAACCATGCATCGACTGCCGCTATTATCATTATAACTATGACTTTTAATTAAGACTTTCTTATGAAACCTCTAGCGTGCATGTTTTTTTGTAAGC AACGTGTATTGTTAATTACACTGATGTTACTTTGATATGCATGGTGATAAAAACAGAGTACTATATTTTATTTGGTTTTCTTAAAAA]
[-] EMBL CF329671             [                                                                                                                                                                                                      GGCGTCGCGCTCCCTCCACCCCGAGGATAAGTTGAGTGGCAACACAAATCCTAAGATTAAGCCCCTTACTTTCCATAATGCTGAGGAGGACGCTCGCATTATGTTTGAGAACATCAATGAGAGAGCACGAGTGGTAGCGGAACCGATGGTGGCATTTCGGAGGAGGCAAAACAGGATTGTGATTGCGGCGGCTGCTTCTGGATGCGTTGTTGGTACTGTTGTGATGGGCGTTTTTCTTTGTCAGGATTGAAACAGCTAGATAAGAGAACCATGCATCGACTGCCGCTATTATCATTATAACTATGACTTTTAATTAAGACTTTCTTATGAAACCTCTAGCGTGCATGTTTTTTTGTAAGCAAACGTGTATTGTTAATTACACTGATGTTACTTTGATATGCATGGTGATAAAAACAGAGTACTATATTTTAaaaaa            ]


>consensus_13903#2 GCGGAAGGGGAAGGGAGGGGAAGGGGAAGGAGAAGGAGAAAGGAGAAGATGAAAGCGAGC GAAACCCTAGCCTCGCTCCCTCCCGAGATCTTGACGCCCGCAACCGGAAGCCGTCGGCAT GGCTAAGGCGCTGCGCTCTCTCGCCGGGAAGCTCAGGCCGCTGGTCGCATCCACCCTCCG CCGGGCGCCGGCGTCGCGCTCCCTCCACCCCGAGGATAAGTTGAGTGGCAACACAAATCC TAAGATTAAGCCCCTTACTTTCCATAATGCTGAGGAGGACGCTCGCATTATGTTTGAGAA CATCAATGAGAGAGCACGAGTGGTAGCGGAACCGATGGTGGCATTTCGGAGGAGGCAAAA CAGGATTGTGATTGCGGCGGCTGCTTCTGGATGCGTTGTTGGTACTGTTGTGATGGGCGT TTTTCTTTGTCAGGATTGAAACAGCTAGATAAGAGAACCATGCATCGACTGCCGCTATTA TCATTATAACTATGACTTTTAATTAAGACTTTCTTATGAAACCTCTAGCGTGCATGTTTT TTTGTAAGCAAACGTGTATTGTTAATTACACTGATGTTACTTTGATATGCATGGTGATAA AAACAGAGTACTATATTTTATATGGTTTTCTTAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13903#0      GCAAGGGGAAGGATTAGGAAGGAGAAGACGAAGGGGAAAGGAGGAGAGGAGCGAAACCCT 60
consensus_13903#1      -------------------------------------------------------CCCNT 5
consensus_13903#2      ---GCGGAAGGGGAAGGGAGGGGAAGGGGAAGGAGAAGGAGAAAGGAGAAGATGAAAGCG 57
                                                                                   

consensus_13903#0      AGGGCCAGG-CAGGCAT-CTCCCTCCCGGGATCTCGACGCCCAGCAACCGGAAGCCATCG 118
consensus_13903#1      AGGGCCAGGGCAGGCATTCTCCCTCCCGGGATCTCGACGCCCAGCAACCGGAAGCCATCG 65
consensus_13903#2      AGCGAAACCCTAGCCTCGCTCCCTCCCGAGATCTTGACGCCC-GCAACCGGAAGCCGTCG 116
                       ** *  *    ** *   ********** ***** ******* ************* ***

consensus_13903#0      GCATGGCTATGGCGCTGCGCTCTCTCGCCGGGAAGCTCAGGCCGCCGGTGGCAGCCACCC 178
consensus_13903#1      GCATGGCTATGCN--TGCGCTCTCTCGCCGGGAAGCTCAGGCCGCCGGTGGCAGCCACCC 123
consensus_13903#2      GCATGGCTAAGGCGCTGCGCTCTCTCGCCGGGAAGCTCAGGCCGCTGGTCGCATCCACCC 176
                       ********* *    ****************************** *** *** ******

consensus_13903#0      TCCGCCGGGCGCCGGCGTCGAGCTCCTTCCACCCCGAGGAGAAGCTGAGCAGCATGACAT 238
consensus_13903#1      TCCGCCGGGCGCCGGCGTCGAGCTCCTTCCACCCCGAGGAGAAGCTGAGCAGCATGACAT 183
consensus_13903#2      TCCGCCGGGCGCCGGCGTCGCGCTCCCTCCACCCCGAGGATAAGTTGAGTGGCAACACAA 236
                       ******************** ***** ************* *** ****  ***  *** 

consensus_13903#0      CTTCTAAGACTAAAACTCCTGTTGATGACAACTGTTTTGAATTGCTTGGGGACAAGTATT 298
consensus_13903#1      CTTCTAAGACTAAAACTCCTGTTGATGACAACTGTTTTGAATTGCTTGGGGACAAGTATT 243
consensus_13903#2      ATCCTAAGATTAAGCCCCTTACT-----------TTCCATAATGCT-------------- 271
                        * ****** ***  * * *  *           **    * ****              

consensus_13903#0      TTGAAGAGCGGTCTCGGATTTTTGCCCAATTGGTTAAGGAAGATGCACGGCGCACGGAGG 358
consensus_13903#1      TTGAAGAGCGGTCTCGGATTTTTGCCCAATTGGTTAAGGAAGATGCACGGCGCACGGAGG 303
consensus_13903#2      --GAGGAGGACGCTCGCATTATGTTTGAGAACATCAATGAGAGAGCACGAGTGGTAGCGG 329
                         ** ***    **** *** *     *     * ** **    *****       * **

consensus_13903#0      AGCAGATCGCTGCATACAAGAAGCTGAAGAGGGCAATGGTTGCTTCTAGCTTGGGCGCAG 418
consensus_13903#1      AGCAGATCGCTGCATACAAGAAGCTGAAGAGGGCAATGGTTGCTTCTAGCTTGGGCGCAG 363
consensus_13903#2      AACCGATGGTGGCATTTCGGAGGAGGCAAAACAGGATTGTGATTGC------GGCGGCTG 383
                       * * *** *  ****    ** *  * * *     ** **   * *      **  ** *

consensus_13903#0      CGATTGGAATTTTTGCCCTTCTCATCAGATATAACGAGTAGTATATCTGATACTGTTGTC 478
consensus_13903#1      CGATTGGAATTTTTGCCCTTCTCATCAGATATAACGAGTAGTATATCTGATACTGTTGTC 423
consensus_13903#2      CTTCTGGATGCGTTGTTGGTACTGT----TGTGATGGGC-GTTTTTCT-------TTGTC 431
                       *   ****    ***    *    *    * * * * *  ** * ***       *****

consensus_13903#0      TAGTACTAGTCTCTTGAGTTTTAGATGATCACCAGCTGGCCTAGTGCCTTTATCTATTTT 538
consensus_13903#1      TAGTACTAGTCTCTTGAGTTTTAGATGATCACCAGCTGGCCTAGTGCCTTTATCTATTTT 483
consensus_13903#2      AGGATTGAAACAGCTAGAT--AAGAGAACCATGCATCGAC-TGCCGCTATTATC-ATTAT 487
                         *    *  *   *   *   ***  * **      * * *   **  ***** *** *

consensus_13903#0      AGAGCACTCTGTTTATCTGATTATGCAGTTAATTTTGGTGTTGCACACTGGTACTGCTAT 598
consensus_13903#1      AGAGCACTCTGTTTATCTGATTATGCAGTTAATTTTGGTGTTGCACACTGGTACTGCTAT 543
consensus_13903#2      A----ACTATGACT-TTTAATTAAG-ACTTTCTTATGAAACCTCTAGCGTGCA-TGTTTT 540
                       *    *** **  * * * **** * * **  ** **      *   *  * * ** * *

consensus_13903#0      ATCGCTGTCCCAGAATATTGGAGGAACTTAATTAAGAGCCCTCTTTGCTTGTGTATCATT 658
consensus_13903#1      ATCGCTGTCCCAGAATATTGGAGGAACTTAATTAAGAGCCCTCTTTGCTTGTGTATCATT 603
consensus_13903#2      TTTG-TAAGCAAACGTGTATTGTTAATTACACTGAT-GTTACTTTGATATGCATGGTGAT 598
                        * * *   * *   * *      ** *  * * *  *     **    **  *     *

consensus_13903#0      GAACATGGTAAGTATCCCTGTCATGTATTTTCTTCTTCAAAAAAAAAATCATCCTTTGTA 718
consensus_13903#1      GAACATGGTAAGTATCCCTGTCATGTATTTTCTTCTTCAAGACAAATTTCATCCTTTGTA 663
consensus_13903#2      AAAAACAG--AGTA-CTATATTTTATATGGTTTTCTTAAAAA------------------ 637
                        ** *  *  **** *  * *  * ***  * ***** ** *                  

consensus_13903#0      TGCTACTGTCGTTCATGCGTGCCTATGCAACAGTTATGAGCGTGATTTATNCCAAAAAAA 778
consensus_13903#1      TGCTAAAAAAAAAAAAAAA----------------------------------------- 682
consensus_13903#2      ------------------------------------------------------------
                                                                                   

consensus_13903#0      AAAAAAAAAAAA 790
consensus_13903#1      ------------
consensus_13903#2      ------------
                                   




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)