cluster # 13904

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Oryza sativa
cluster # 13904 cluster # 13904 Sequences # 14 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_13904#0 length = 1716 sequences # 12

consensus_13904#1 length = 801 sequences # 1
consensus_13904#2 length = 499 sequences # 1

consensusID : consensus_13904#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 12
consensus length = 1716
fasta sequence

                              [CACAACCGCGCGGCAGCTCTGACTCCGGTGGTTTTCCCGAGAGCTGCCGGTTTTAAACGCGTTTCAGCACCAACAAAGCAAGGGCAAAGCCCAAGCCCACCACCAAGTCTCCGACCACTAAACTTGCAAAAAAAAAAAAAGAAACACAAAAAAAATGTCAATCCAAGCTAATCCCCTCATCAAAACCCTAGCCTTGTCGCCTCGTCGGCGGATGGCGCCGCCGGCGCCGGCGACGGCGCGGCGCCCGATGGCGGCCGTCCGCTGCTCCGCGGCGAAGAGGAGCTACAACGTCACGCTCCTCCCCGGTGACGGCATCGGCCCGGAGGTGGTCGCCGTCGCCAAGGACGTCCTCTCCCTCGCCGGCGCTCTCGAAGGCGTCGAGTTCCGCTTCCAGGAGAAGCTGATGGGC-GGCGCGGCGGTGGATGCGTACGGCGTGCCGCTCCCGGAGGAGACGCTCGCGGCGGCGCAGGCGTCGGACGCCGTCCTCCTCGGCGCCATAGGAGGGTATAAGTGGGATAACAATGAGAAGCACCTCAAGCCAGAGACTGGGTTGCTCCAGATACGCGCTGGGCTTGGCGTCTTTGCTAATCTGAGGCCAGCTGCAGTGTTGCCTCAGTTAGTAGATGCATCTACTTTGAAAAAAGAAGTAGCTGAAGGAGTCGACATCATGGTTGTTAGAGAGCTTACAGGAGGAATATACTTCGGCCAACCTAGGGGTTTTGGAAAGAACGACAAAGGAGAAGACACTGGCTTCAACACTGAAGTATATTCAGCTTCTGAGATTGATCGAATCACACGTGTTGCATTTGAGGTTGCTCGCAAGAGGCGCGGGAAGCTTTGCTCAGTAGACAAAGCGAATGTGCTTGAGGCATCTATGCTTTGGAGAAAACGGGTGACTTCATTAGCTTCTGAATTCCCTGACATTGAGCTGTCGCACATGTATGTTGATAATGCAGCAATGCAGCTTATTAGGAATCCTAAGCAGTTTGACACAATTGTCACAAACAATATTTTTGGTGACATATTGTCTGATGAAGCATCAATGCTTACTGGAAGCATTGGAATGCTCCCATCTGCCAGTGTTGGTGAATCGGGACCAGGTCTTTTTGAGCCTATTCATGGTTCTGCGCCCGACATTGCTGGGCAGGATAAGGCAAACCCATTAGCTACAATTCTTAGTGCTGCCATGCTATTGCGGTATGGCCTTGGAGAAGAAAATGCTGCAAAGAGAGTTGAAGCCG-CAGTT-ACAGAGACA-CTAAACA-ACGGG-TTCCG-AAC-TGGGGACA-TATATT-CTCCT-GGAACG-ACC-TTGG-TC-GGA-TGCAAG-CG-AATGGGA-GAGGAAGTCCTGAAGACTGTAGAGTCGCAGAGCGCGGTTGCTCTAAACTCGTAGCTCTCAGTATTTCAGCTGTAGCCCTGTGATTGTGATGGTCGAAAGCACATCAGAGATTGAGGCCGCCAAAGAATCACATTGATGCTGGACTTCCTGATGTTTTTTGCCTGTCCTTGTGTCATTCTGT-AACTTAGCGCATGAGTTGCCTCTTTCCCCTTTTCTCTTGTACCTTGAATTTTTTCTGTGGTGATGGTTGACTTAACTGTCTAGGCC-AAC-AATAATAAAATGGGGTTGGTTCCATATACCTAGCTGAACAAGAGGTTGGTTGTGTAACGTACTAACGTTGGTTGAGTATATATACTACCCCCATCTCCTGTTCATGTTGCTGTAAAAAA]

[+] EMBL CB646289             [CACAACCGCGCGGCAGCTCTGACTCCGGTGGTTTTCCCGAGAGCTGCCGGTTTTAAACGCGTTTCAGCACCAACAAAGCAAGGGCAAAGCCCAAGCCCACCACCAAGTCTCCGACCACTAAACTTGCAAAAAAAAAAAAAGAAACACAAAAAAAATGTCAATCCAAGCTAATCCCCTCATCAAAACCCTAGCCTTGTCGCCTCGTCGGCGGATGGCGCCGCCGGCGCCGGCGACGGCGCGGCGCCCGATGGCGGCCGTCCGCTGCTCCGCGGCGAAGAGGAGCTACAACGTCACGCTCCTCCCCGGTGACGGCATCGGCCCGGAGGTGGTCGCCGTCGCCAAGGACGTCCTCTCCCTCGCCGGCGCTCTCGAAGGCGTCGAGTTCCGCTTCCAGGAGAAGCTGATGGGC GGCGCGGCGGTGGATGCGTACGGCGTGCCGCTCCCGGAGGAGACGCTCGCGGCGGCGCAGGCGTCAGACGCCGTCCTCCTCGGCGCCATAGGAGGGTATAAGTGGGATAACAATGAGAAGCACCTCAAGCCAGAGACTGGGTTGCTCCAGATACGCGCTGGGCTTGGCGTCTTTGCTAATCTGAGGCCAGCTGCAGTGTTGCCTCAGTTAGTAGATGCATCTACTTTGAAAAAAGAAGTAGCTGAAGGAGTCGACATCATGGTTGTTAGAGAGCTTACAGGAGGAATATACTTCGGCCAACCTATGGGTTTTGGAAAGAACGACAAAGGAGAAGACACTGGCTTCAACACTGAAGTATAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL AU070347             [                                                                                                                                                           TGTCAATCCAAGCTAATCCCCTCATCAAAACCCTAGCCTTGTCGCCTCGTCGGCGGATGGNGCNGCCGGC CGGTCGACGGC NGGCGCCCGATGGCGGCCGTCCGCTGCTCCGCGGCGAAGAGGAGCTACAACGTCACGCTCCTCCCCGGTGACNGCATCGGCCCGGAGGTGGTCGCCGTCGCCAAGGACGTCCTCTCCCTCGCCGGCGCTCTCGAAGGCGTCGAGTTCCGCTTCCAGGAGAAGCTGATAGGCGGGCGCGGCGGTGGATNCGTACGGCGTGCCGCTCCCGGA GAGACGCTCGCGGCGGCGCAag                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL CB668391             [                                                                                                                                                                     AGCTAATCCCCTCATCAAAACCCTAGCCTTGTCGCCTCGTCGGCGGATGGCGCCGCCGGCGCCGGCGACGGCGCGGCGCCCGATGGCGGCCGTCCGCTGCTCCGCGGCGAAGAGGAGCTACAACGTCACGCTCCTCCCCGGTGACGGCATCGGCCCGGAGGTGGTCGCCGTCGCCAAGGACGTCCTCTCCCTCGCCGGCGCTCTCGAAGGCGTCGAGTTCCGCTTCCAGGAGAAGCTGATGGGC GGCGCGGCGGTGGATGCGTACGGCGTGCCGCTCCCGGAGGAGACGCTCGCGGCGGCGCAGGCGTCGGACGCCGTCCTCCTCGGCGCCATAGGAGGGTATAAGTGGGATAACAATGAGAAGCACCTCAAGCCAGAGACTGGGTTGCTCCAGATACGCGCTGGGCTTGGCGTCTTTGCTAATCTGAGGCCAGCTGCAGTGTTGCCTCAGTTAGTAGATGCATCTACTTTGAAAAAAGAAGTAGCTGAAGGAGTCGACATCATGGTTGTTAGAGAGCTTACAGGAGGAATATACTTCGGCCAACCTAGGGGTTTTGGAAAGAACGACAAAGGAGAAGACACTGGCTTCAACACTGAAGTATATTCAGCTTCTGAGATTGATCGAATCACACGTGTTGCGTTTGAGGTTGCTCGCAAGAGGCGCGGGAAGCTTTGCTCAGTAGACAAAGCGAATGTGCTTGAGGCATCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL AK120254             [                                                                                                                                                                       CTAATCCCCTCATCAAAACCCTAGCCTTGTCGCCTCGTCGGCGGATGGCGCCGCCGGCGCCGGCGACGGCGCGGCGCCCGATGGCGGCCGTCCGCTGCTCCGCGGCGAAGAGGAGCTACAACGTCACGCTCCTCCCCGGTGACGGCATCGGCCCGGAGGTGGTCGCCGTCGCCAAGGACGTCCTCTCCCTCGCCGGCGCTCTCGAAGGCGTCGAGTTCCGCTTCCAGGAGAAGCTGATGGGC GGCGCGGCGGTGGATGCGTACGGCGTGCCGCTCCCGGAGGAGACGCTCGCGGCGGCGCAGGCGTCGGACGCCGTCCTCCTCGGCGCCATAGGAGGGTATAAGTGGGATAACAATGAGAAGCACCTCAAGCCAGAGACTGGGTTGCTCCAGATACGCGCTGGGCTTGGCGTCTTTGCTAATCTGAGGCCAGCTGCAGTGTTGCCTCAGTTAGTAGATGCATCTACTTTGAAAAAAGAAGTAGCTGAAGGAGTCGACATCATGGTTGTTAGAGAGCTTACAGGAGGAATATACTTCGGCCAACCTAGGGGTTTTGGAAAGAACGACAAAGGAGAAGACACTGGCTTCAACACTGAAGTATATTCAGCTTCTGAGATTGATCGAATCACACGTGTTGCATTTGAGGTTGCTCGCAAGAGGCGCGGGAAGCTTTGCTCAGTAGACAAAGCGAATGTGCTTGAGGCATCTATGCTTTGGAGAAAACGGGTGACTTCATTAGCTTCTGAATTCCCTGACATTGAGCTGTCGCACATGTATGTTGATAATGCAGCAATGCAGCTTATTAGGAATCCTAAGCAGTTTGACACAATTGTCACAAACAATATTTTTGGTGACATATTGTCTGATGAAGCATCAATGCTTACTGGAAGCATTGGAATGCTCCCATCTGCCAGTGTTGGTGAATCGGGACCAGGTCTTTTTGAGCCTATTCATGGTTCTGCGCCCGACATTGCTGGGCAGGATAAGGCAAACCCATTAGCTACAATTCTTAGTGCTGCCATGCTATTGCGGTATGGCCTTGGAGAAGAAAATGCTGCAAAGAG GTTGAAGCCG CAGTT ACAGAGACA CTAAACA ACGGG TTCCG AAC TGGGGACA TATATT CTCCT GGAACG ACC TTGG TC GGA TGCAAG CG AATGGGA GAGGAAGTCCTGAAGACTGTAGAGTCGCAGAGCGCGGTTGCTCTAAACTCGTAGCTCTCAGTATTTCAGCTGTAGCCCTGTGATTGTGATGGTCGAAAGCACATCAGAGATTGAGGCCGCCAAAGAATCACATTGATGCTGGACTTCCTGATGTTTTTTGCCTGTCCTTGTGTCATTCTGT AACTTAGCGCATGAGTTGCCTCTTTCCCCTTTTCTCTTGTACCTTGAATTTTTTCTGTGGTGATGGTTGACTTAACTGTCTAGGCC AAC AATAATAAAATGGGGTTGGTTCCATATACCTAGCTGAACAAGAGGTTGGTTGTGTAACGTACTAACGTTGGTTGAGTATATATACTACCCCC                           ]
[+] EMBL CB677987             [                                                                                                                                                                                           ctccCCTTGTCGCCTCGTCGGCGGATGGCGCCGCCGGCGCCGGCGACGGCGCGGCGCCCGATGGCGGCCGTCCGCTGCTCCGCGGCGAAGAGGAGCTACAACGTCACGCTCCTCCCCGGTGACGGCATCGGCCCGGAGGTGGTCGCCGTCGCCAAGGACGTCCTCTCCCTCGCCGGCGCTCTCGAAGGCGTCGAGTTCCGCTTCCAGGAGAAGCTGATGGGC GGCGCGGCGGTGGATGCGTACGGCGTGCCGCTCCCGGAGGAGACGCTCGCGGCGGCGCAGGCGTCGGACGCCGTCCTCCTCGGCGCCATAGGAGGGTATAAGTGGGATAACAATGAGAAGCACCTCAAGCCAGAGACTGGGTTGCTCCAGATACGCGCTGGGCTTGGCGTCTTTGCTAATCTGAGGCCAGCTGCAGTGTTGCCTCAGTTAGTAGATGCATCTACTTTGAAAAAAGAAGTAGCTGAAGGAGTCGACATCATGGTTGTTAGAGAGCTTACAGGAGGAATATACTTCGGCCAACCTACGGGTTTTGGAAAGAACGACAAAGGAGAAGACACTGGCTTCAACACTGAAGTATATTCAGCTTCTGAGATTGATCGAATCACACGTGTTGCATTTGAGGTTGCTCCCAAGAGGCGCGGGAAGCTTTGCTCCGAAGACAAAGCGAAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CB677850             [                                                                                                                                                                                                                                                                                        AGTTACAACGNCACGCTCCTCCCCGGTGACGGCATCGGCCCGGAGGTGGTCGCCGTCGCCAAGGACGTCCTCTCCCTCGCCGGCGCTCTCGAAGGCGTCGAGTTCCGCTTCCAGGAGAAGCTGATGGGC GGCGCGGCGGTGGATGCGTACGGCGTGCCGCTCCCGGAGGAGACGCTCGCGGCGGCGCAGGCGTCGGACGCCGTCCTCCTCGGCGCCATAGGAGGGTATAAGTGGGATAACAATGAGAAGCACCTCAAGCCAGAGACTGGGTTGCTCCAGATACGCGCTGGGCTTGGCGTCTTTGCTAATCTGAGGCCAGCTGCAGTGTTGCCTCAGTTAGTAGATGCATCTACTTTGAAAAAAGAAGTAGCTGAAGGAGTCGACATCATGGTTGTTAGAGAGCTTACAGGAGGAATATACTTCGGCCAACCTAGGGGTTTTGGAAAGAACGACAAAGGAGAAGACACTGGCTTCAACACTGAAGTATATTCAGCTTCTGAGATTGATCGAATCACACGTGTTGCATTTGAGGTTGCTCGCAAGAGGCGCGGGAAGCTTTGCTCAGAAGACAAAGCGAATGTGCTTGAGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL AK066745             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ATCACACGTGTTGCATTTGAGGTTGCTCGCAAGAGGCGCGGGAAGCTTTGCTCAGTAGACAAAGCGAATGTGCTTGAGGCATCTATGCTTTGGAGAAAACGGGTGACTTCATTAGCTTCTGAATTCCCTGACATTGAGCTGTCGCACATGTATGTTGATAATGCAGCAATGCAGCTTATTAGGAATCCTAAGCAGTTTGACACAATTGTCACAAACAATATTTTTGGTGACATATTGTCTGATGAAGCATCAATGCTTACTGGAAGCATTGGAATGCTCCCATCTGCCAGTGTTGGTGAATCGGGACCAGGTCTTTTTGAGCCTATTCATGGTTCTGCGCCCGACATTGCTGGGCAGGATAAGGCAAACCCATTAGCTACAATTCTTAGTGCTGCCATGCTATTGCGGTATGGCCTTGGAGAAGAAAATGCTGCAAAGAGAGTTGAAGCCG CAGTT ACAGAGACA CTAAACA ACGGG TTCCG AAC TGGGGACA TATATT CTCCT GGAACG ACC TTGG TC GGA TGCAAG CG AATGGGA GAGGAAGTCCTGAAGACTGTAGAGTCGCAGAGCGCGGTTGCTCTAAACTCGTAGCTCTCAGTATTTCAGCTGTAGCCCTGTGATTGTGATGGTCGAAAGCACATCAGAGATTGAGGCCGCCAAAGAATCACATTGATGCTGGACTTCCTGATGTTTTTTGCCTGTCCTTGTGTCATTCTGT AACTTAGCGCATGAGTTGCCTCTTTCCCCTTTTCTCTTGTACCTTGAATTTTTTCTGTGGTGATGGTTGACTTAACTGTCTAGGCC AAC AATAATAAAATGG                                                                                                          ]
[-] EMBL CB646087             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 TGAGGCATCTATGCTTTGGAGAAAACGGGTGACTTCATTAGCTTCTGAATTCCCTGACATTGAGCTGTCGCACATGTATGTTGATAATGCAGCAATGCAGCTTATTAGGAATCCTAAGCAGTTTGACACAATTGTCACAAACAATATTTTTGGTGACATATTGTCTGATGAAGCATCAATGCTTACTGGAAGCATTGGAATGCTCCCATCTGCCAGTGTTGGTGAATCGGGACCAGGTCTTTTTGAGCCTATTCATGGTTCTGCGCCCGACATTGCTGGGCAGGATAAGGCAAACCCATTAGCTACAATTCTTAGTGCTGCCATGCTATTGCGGTATGGCCTTGGAGAAGAAAATGCTGCAAAGAGAGTTGAAGCCG CAGTT ACAGAGACA CTAAACA ACGGG TTCCG AAC TGGGGACA TATATT CTCCT GGAACG ACC TTGG TC GGA TGCAAG CG AATGGGA GAGGAAGTCCTGAAGACTGTAGAGTCGCAGAGCGCGGTTGCTCTAAACTCGTAGCTCTCAGTATTTCAGCTGTAGCCCTGTGATTGTGATGGTCGAAAGCACATCAGAGATTGAGGCCGCCAAAGAATCACATTGATGCTGGACTTCCTGATGTTTTTTGCCTGTCCTTGTGTCATTCTGT AACTTAGCGCATGAGTTGCCTCTTTCCCCTTTTCTCTTGTACCTTGAATTTTTTCTGTGGTGATGGTTGACTTAACTGTTTAGGCC AAC AATAATAAAATGG                                                                                                          ]
[-] EMBL CB677851             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              TGACTTCATTAGCTTCTGAATTCCCTGACATTGAGCTGTCGCACATGTATGTTGATAATGCAGCAATGCAGCTTATTAGGAATCCTAAGCAGTTTGACACAATTGTCACAAACAATATTTTTGGTGACATATTGTCTGATGAAGCATCAATGCTTACTGGAAGCATTGGAATGCTCCCATCTGCCAGTGTTGGTGAATCGGGACCAGGTCTTTTTGAGCCTATTCATGGTTCTGCGCCCGACATTGCTGGGCAGGATAAGGCAAACCCATTAGCTACAATTCTTAGTGCTGCCATGCTATTGCGGTATGGCCTTGGAGAAGAAAATGCTGCAAAGAGAGTTGAAGCCG CAGTT ACAGAGACA CTAAACA ACGGG TTCCG AAC TGGGGACA TATATT CTCCT GGAACG ACC TTGG TC GGA TGCAAG CG AATGGGA GAGGAAGTCCTGAAGACTGTAGAGTCGCAGAGCGCGGTTGCTCTAAACTCGTAGCTCTCAGTATTTCAGCTGTAGCCCTGTGATTGTGATGGTTGAAAGCACATCAGAGATTGAGGCCGCCAAAGAATCACATTGATGCTGGACTTCCTGATGTTTTTTGCCTGTCCTTGTGTCATTCTGT AACTTAGCGCATGAGTTGCCTCTTTCCCCTTTTCTCTTGTACCTTGAATTTTTTCTGTGGTGATGGTTGACTTAACTGTCTAGGCC AAC AATAATAAAATGGGGTTGGTTCCATATACCTAGCTGAACAAGAGGTTGGTTGTGTAACGTACTAACGTTGGTTGAGTATATATACTACCCCCATCTCCTGT                  ]
[-] EMBL CB677988             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 CTGTCGCACATGTATGTTGATAATGCAGCAATGCAGCTTATTAGGAATCCTAAGCAGTTTGACACAATTGTCACAAACAATATTTTTGGTGACATATTGTCTGATGAAGCATCAATGCTTACTGGAAGCATTGGAATGCTCCCATCTGCCAGTGTTGGTGAATCGGGACCAGGTCTTTTTGAGCCTATTCATGGTTCTGCGCCCGACATTGCTGGGCAGGATAAGGCAAACCCATTAGCTACAATTCTTAGTGCTGCCATGCTATTGCGGTATGGCCTTGGAGAAGAAAATGCTGCAAAGAGAGTTGAAGCCG CAGTT ACAGAGACA CTAAACA ACGGG TTCCG AAC TGGGGACA TATATT CTCCT GGAACG ACC TTGG TC GGA TGCAAG CG AATGGGA GAGGAAGTCCTGAAGACTGTAGAGTCGCAGAGCGCGGTTGCTCTAAACTCGTAGCTCTCAGTATTTCAGCTGTAGCCCTGTGATTGTGATGGTTGAAAGCACATCAGAGATTGAGGCCGCCAAAGAATCACATTGATGCTGGACTTCCTGATGTTTTTTGCCTGTCCTTGTGTCATTCTGT AACTTAGCGCATGAGTTGCCTCTTTCCCCTTTTCTCTTGTACCTTGAATTTTTTCTGTGGTGATGGTTGACTTAACTGTCTAGGCC AAC AATAATAAAATGGGGTTGGTTCCATATACCTAGCTGAACAAGAGGTTGGTTGTGTAACGTACTAAAGGGGGTTGAGTATATATACTACCCCCATCTCCTGT                  ]
[-] EMBL CB647307             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             TCAAGGTTTGGCGCCGGACATTGCTGGGCAGGATAAGGCAAACCCATTAGCTACAATTCTTAGTGCTGCCATGCTATTGCGGTATGGCCTTGGAGAAGAAAATGCTGCAAAGAGAGTTGAAGCCG CAGTT ACAGAGACA CTAAACA ACGGG TTCCG AAC TGGGGACA TATATT CTCCT GGAACG ACC TTGG TC GGA TGCAAG CG AATGGGA GAGGAAGTCCTGAAGACTGTAGAGTCGCAGAGCGCGGTTGCTCTAAACTCGTAGCTCTCAGTATTTCAGCTGTAGCCCTGTGATTGTGATGGTCGAAAGCACATCAGAGATTGAGGCCGCCAAAGAATCACATTGATGCTGGACTTCCTGATGTTTTTTGCCTATCCTTGTGTCATTCTGT AACTTAGCGCAAGAGTTGCCTCTTTCCCCTTTTCTCTTATACCTTGAATTTTTTCTGTGGTGATGGTTGACTTAACTGTGTAGGCC AAC AATAATAAAATGGGGTTGGTTCCATATACCTAGCTGAACAAGAGGTTGGTTGTGTAACGTATAAAGGTTGGTTGAGTATATATACTA                                ]
[+] EMBL BI813467             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    gcGCCGCCAGTTAACAGAGACATCTTGTCATACGGGTTTCCGTATCGTGGGGACATTATATTGCTCCTGGGAACGAACCTTTGGTTCGGGATTGCAAGCCGAAATGGGAGGAGGAAGTCCTGAAGACTGTAGAGTCGCAGAGCCCGGTTGCTCTAAACTCGTAGCTCTCAGTATTTCAGCTGTAGCCCTGTGATTGTGATGGTCGAAAGCACATCAGAGATTGAGGCCGCCAAAGAATCACATTGATGCTGGACTTCCTGATGTTTTTTGCCTGTCCTTGTGTCATTCTGTGAACTTAGCGCATGAGTTGCCTCTTTCCCCTGTTCTCTTGTACCTTGAATTTTTTCTGTGGTGATGGTTGACTTAACTGTCTAGGCCAAACAAATAATAAAATGGGGTTGGTTCCATATACCTAGCTGAACAAGAGGTTGGTTGTGTAACGTACTAACGTTGGTTGAGTATATATACTACCCCCATCTCCTGTTCATGTTGCTGTAAAAAA]




>consensus_13904#0
CACAACCGCGCGGCAGCTCTGACTCCGGTGGTTTTCCCGAGAGCTGCCGGTTTTAAACGC
GTTTCAGCACCAACAAAGCAAGGGCAAAGCCCAAGCCCACCACCAAGTCTCCGACCACTA
AACTTGCAAAAAAAAAAAAAGAAACACAAAAAAAATGTCAATCCAAGCTAATCCCCTCAT
CAAAACCCTAGCCTTGTCGCCTCGTCGGCGGATGGCGCCGCCGGCGCCGGCGACGGCGCG
GCGCCCGATGGCGGCCGTCCGCTGCTCCGCGGCGAAGAGGAGCTACAACGTCACGCTCCT
CCCCGGTGACGGCATCGGCCCGGAGGTGGTCGCCGTCGCCAAGGACGTCCTCTCCCTCGC
CGGCGCTCTCGAAGGCGTCGAGTTCCGCTTCCAGGAGAAGCTGATGGGCGGCGCGGCGGT
GGATGCGTACGGCGTGCCGCTCCCGGAGGAGACGCTCGCGGCGGCGCAGGCGTCGGACGC
CGTCCTCCTCGGCGCCATAGGAGGGTATAAGTGGGATAACAATGAGAAGCACCTCAAGCC
AGAGACTGGGTTGCTCCAGATACGCGCTGGGCTTGGCGTCTTTGCTAATCTGAGGCCAGC
TGCAGTGTTGCCTCAGTTAGTAGATGCATCTACTTTGAAAAAAGAAGTAGCTGAAGGAGT
CGACATCATGGTTGTTAGAGAGCTTACAGGAGGAATATACTTCGGCCAACCTAGGGGTTT
TGGAAAGAACGACAAAGGAGAAGACACTGGCTTCAACACTGAAGTATATTCAGCTTCTGA
GATTGATCGAATCACACGTGTTGCATTTGAGGTTGCTCGCAAGAGGCGCGGGAAGCTTTG
CTCAGTAGACAAAGCGAATGTGCTTGAGGCATCTATGCTTTGGAGAAAACGGGTGACTTC
ATTAGCTTCTGAATTCCCTGACATTGAGCTGTCGCACATGTATGTTGATAATGCAGCAAT
GCAGCTTATTAGGAATCCTAAGCAGTTTGACACAATTGTCACAAACAATATTTTTGGTGA
CATATTGTCTGATGAAGCATCAATGCTTACTGGAAGCATTGGAATGCTCCCATCTGCCAG
TGTTGGTGAATCGGGACCAGGTCTTTTTGAGCCTATTCATGGTTCTGCGCCCGACATTGC
TGGGCAGGATAAGGCAAACCCATTAGCTACAATTCTTAGTGCTGCCATGCTATTGCGGTA
TGGCCTTGGAGAAGAAAATGCTGCAAAGAGAGTTGAAGCCGCAGTTACAGAGACACTAAA
CAACGGGTTCCGAACTGGGGACATATATTCTCCTGGAACGACCTTGGTCGGATGCAAGCG
AATGGGAGAGGAAGTCCTGAAGACTGTAGAGTCGCAGAGCGCGGTTGCTCTAAACTCGTA
GCTCTCAGTATTTCAGCTGTAGCCCTGTGATTGTGATGGTCGAAAGCACATCAGAGATTG
AGGCCGCCAAAGAATCACATTGATGCTGGACTTCCTGATGTTTTTTGCCTGTCCTTGTGT
CATTCTGTAACTTAGCGCATGAGTTGCCTCTTTCCCCTTTTCTCTTGTACCTTGAATTTT
TTCTGTGGTGATGGTTGACTTAACTGTCTAGGCCAACAATAATAAAATGGGGTTGGTTCC
ATATACCTAGCTGAACAAGAGGTTGGTTGTGTAACGTACTAACGTTGGTTGAGTATATAT
ACTACCCCCATCTCCTGTTCATGTTGCTGTAAAAAA

consensusID : consensus_13904#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 801
fasta sequence

                              [AAGCTTTGCTCAGTAGACAAAGCGAATGTGCTTGAGGCATCTATGCTTTGGAGAAAACGGGTGACTTCATTAGCTTCTGAATTCCCTGACATTGAGCTGTCGCACATGTATGTTGATAATGCAGCAATGCAGCTTATTAGGAATCCTAAGCAGTTTGACACAATTGTCACAAACAATATTTTTGGTGACATATTGTCTGATGAAGCATCAATGCTTACTGGAAGCATTGGAATGCTCCCATCTGCCAGTGTTGGTGAATCGGGACCAGGTCTTTTTGAGCCTATTCATGGTTCTGCGCCCGACATTGCTGGGCAGGATAAGGCAAACCCATTAGCTACAATTCTTAGTGCTGCCATGCTATTGCGGTATGGCCTTGGAGAAGAAAATGCTGCAAAGAGAGTTGAAGCCGCAGTTACAGAGACACTAAACAACGGGTTCCGAACTGGGGACATATATTCTCCTGGAACGACCTTGGTCGGATGCAAGCGAATGGGAGAGGAAGTCCTGAAGACTGTAGAGTCGCAGAGCGCGGTTGCTCTAAACTCGTAGCTCTCAGTATTTCAGCTGTAGCCCTGTGATTGTGATGGTCGAAAGCACATCAGAGATTGAGGCCGCCAAAGAATCACATTGATGCTGGACTTCCTGATGTTTTTTGCCTGTCCTTGTGTCATTCTGTAACTTAGGGCATGAGTTGCCTCTTTCCCCTTTTCTCTTGTACCTTGAATTTTTTCTGTGGTGATGGTTGACTTATCTTTAAGGGCCAACAATAATAAAATGGGGTTGGTTCCATCCTTAAAGAGA]

[-] EMBL CB668392             [AAGCTTTGCTCAGTAGACAAAGCGAATGTGCTTGAGGCATCTATGCTTTGGAGAAAACGGGTGACTTCATTAGCTTCTGAATTCCCTGACATTGAGCTGTCGCACATGTATGTTGATAATGCAGCAATGCAGCTTATTAGGAATCCTAAGCAGTTTGACACAATTGTCACAAACAATATTTTTGGTGACATATTGTCTGATGAAGCATCAATGCTTACTGGAAGCATTGGAATGCTCCCATCTGCCAGTGTTGGTGAATCGGGACCAGGTCTTTTTGAGCCTATTCATGGTTCTGCGCCCGACATTGCTGGGCAGGATAAGGCAAACCCATTAGCTACAATTCTTAGTGCTGCCATGCTATTGCGGTATGGCCTTGGAGAAGAAAATGCTGCAAAGAGAGTTGAAGCCGCAGTTACAGAGACACTAAACAACGGGTTCCGAACTGGGGACATATATTCTCCTGGAACGACCTTGGTCGGATGCAAGCGAATGGGAGAGGAAGTCCTGAAGACTGTAGAGTCGCAGAGCGCGGTTGCTCTAAACTCGTAGCTCTCAGTATTTCAGCTGTAGCCCTGTGATTGTGATGGTCGAAAGCACATCAGAGATTGAGGCCGCCAAAGAATCACATTGATGCTGGACTTCCTGATGTTTTTTGCCTGTCCTTGTGTCATTCTGTAACTTAGGGCATGAGTTGCCTCTTTCCCCTTTTCTCTTGTACCTTGAATTTTTTCTGTGGTGATGGTTGACTTATCTTTAAGGGCCAACAATAATAAAATGGGGTTGGTTCCATCCTTAAAGAGA]




>consensus_13904#1
AAGCTTTGCTCAGTAGACAAAGCGAATGTGCTTGAGGCATCTATGCTTTGGAGAAAACGG
GTGACTTCATTAGCTTCTGAATTCCCTGACATTGAGCTGTCGCACATGTATGTTGATAAT
GCAGCAATGCAGCTTATTAGGAATCCTAAGCAGTTTGACACAATTGTCACAAACAATATT
TTTGGTGACATATTGTCTGATGAAGCATCAATGCTTACTGGAAGCATTGGAATGCTCCCA
TCTGCCAGTGTTGGTGAATCGGGACCAGGTCTTTTTGAGCCTATTCATGGTTCTGCGCCC
GACATTGCTGGGCAGGATAAGGCAAACCCATTAGCTACAATTCTTAGTGCTGCCATGCTA
TTGCGGTATGGCCTTGGAGAAGAAAATGCTGCAAAGAGAGTTGAAGCCGCAGTTACAGAG
ACACTAAACAACGGGTTCCGAACTGGGGACATATATTCTCCTGGAACGACCTTGGTCGGA
TGCAAGCGAATGGGAGAGGAAGTCCTGAAGACTGTAGAGTCGCAGAGCGCGGTTGCTCTA
AACTCGTAGCTCTCAGTATTTCAGCTGTAGCCCTGTGATTGTGATGGTCGAAAGCACATC
AGAGATTGAGGCCGCCAAAGAATCACATTGATGCTGGACTTCCTGATGTTTTTTGCCTGT
CCTTGTGTCATTCTGTAACTTAGGGCATGAGTTGCCTCTTTCCCCTTTTCTCTTGTACCT
TGAATTTTTTCTGTGGTGATGGTTGACTTATCTTTAAGGGCCAACAATAATAAAATGGGG
TTGGTTCCATCCTTAAAGAGA

consensusID : consensus_13904#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 499
fasta sequence

                              [TNGTTCTGCGCCCGACATTGCTGGGCAAGGATAAGGCACACCCATTANCTACAATTCTTATNGCTGCCATGCTATTGCGGTATGGCCTTGGAGAANAAANTGCTGCAAATAGAGTTGAAGCCGCANTTACAGAGACACTAAACAACGGNTTCCGAACTGGGGACATATATTCTCCTGGAACGACCTTGNTCGGATGCAAGCGAATGGGANAGGAANNCCTGAANACTGTTGAGTCGCATTAGCGCGGTTGCTCTAAACTCGNAGCTCTCAGGNTNTNANNTGTAGNCCTGTGATTGTGATGGTCGAAAGNNCATCANATTATTGAGGCCGCCAAACAATCACATTGATGCTGGACTTCCTGATGACTTTTTGCCTGACCTTGTGTCATTCTGTAACTTAGCGCATGAGTTGCCTCTNTTCCCTTTTCTCTTGTACCTTGAATTCTNTCTGCGGTGATGGCTGACTTAACTGTCTANGCCNACAATAATNAAAAGNGGTT]

[+] EMBL CA766729             [TNGTTCTGCGCCCGACATTGCTGGGCAAGGATAAGGCACACCCATTANCTACAATTCTTATNGCTGCCATGCTATTGCGGTATGGCCTTGGAGAANAAANTGCTGCAAATAGAGTTGAAGCCGCANTTACAGAGACACTAAACAACGGNTTCCGAACTGGGGACATATATTCTCCTGGAACGACCTTGNTCGGATGCAAGCGAATGGGANAGGAANNCCTGAANACTGTTGAGTCGCATTAGCGCGGTTGCTCTAAACTCGNAGCTCTCAGGNTNTNANNTGTAGNCCTGTGATTGTGATGGTCGAAAGNNCATCANATTATTGAGGCCGCCAAACAATCACATTGATGCTGGACTTCCTGATGACTTTTTGCCTGACCTTGTGTCATTCTGTAACTTAGCGCATGAGTTGCCTCTNTTCCCTTTTCTCTTGTACCTTGAATTCTNTCTGCGGTGATGGCTGACTTAACTGTCTANGCCNACAATAATNAAAAGNGGTT]




>consensus_13904#2
TNGTTCTGCGCCCGACATTGCTGGGCAAGGATAAGGCACACCCATTANCTACAATTCTTA
TNGCTGCCATGCTATTGCGGTATGGCCTTGGAGAANAAANTGCTGCAAATAGAGTTGAAG
CCGCANTTACAGAGACACTAAACAACGGNTTCCGAACTGGGGACATATATTCTCCTGGAA
CGACCTTGNTCGGATGCAAGCGAATGGGANAGGAANNCCTGAANACTGTTGAGTCGCATT
AGCGCGGTTGCTCTAAACTCGNAGCTCTCAGGNTNTNANNTGTAGNCCTGTGATTGTGAT
GGTCGAAAGNNCATCANATTATTGAGGCCGCCAAACAATCACATTGATGCTGGACTTCCT
GATGACTTTTTGCCTGACCTTGTGTCATTCTGTAACTTAGCGCATGAGTTGCCTCTNTTC
CCTTTTCTCTTGTACCTTGAATTCTNTCTGCGGTGATGGCTGACTTAACTGTCTANGCCN
ACAATAATNAAAAGNGGTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13904#0      CACAACCGCGCGGCAGCTCTGACTCCGGTGGTTTTCCCGAGAGCTGCCGGTTTTAAACGC 60
consensus_13904#1      ------------------------------------------------------------
consensus_13904#2      ------------------------------------------------------------
                                                                                   

consensus_13904#0      GTTTCAGCACCAACAAAGCAAGGGCAAAGCCCAAGCCCACCACCAAGTCTCCGACCACTA 120
consensus_13904#1      ------------------------------------------------------------
consensus_13904#2      ------------------------------------------------------------
                                                                                   

consensus_13904#0      AACTTGCAAAAAAAAAAAAAGAAACACAAAAAAAATGTCAATCCAAGCTAATCCCCTCAT 180
consensus_13904#1      ------------------------------------------------------------
consensus_13904#2      ------------------------------------------------------------
                                                                                   

consensus_13904#0      CAAAACCCTAGCCTTGTCGCCTCGTCGGCGGATGGCGCCGCCGGCGCCGGCGACGGCGCG 240
consensus_13904#1      ------------------------------------------------------------
consensus_13904#2      ------------------------------------------------------------
                                                                                   

consensus_13904#0      GCGCCCGATGGCGGCCGTCCGCTGCTCCGCGGCGAAGAGGAGCTACAACGTCACGCTCCT 300
consensus_13904#1      ------------------------------------------------------------
consensus_13904#2      ------------------------------------------------------------
                                                                                   

consensus_13904#0      CCCCGGTGACGGCATCGGCCCGGAGGTGGTCGCCGTCGCCAAGGACGTCCTCTCCCTCGC 360
consensus_13904#1      ------------------------------------------------------------
consensus_13904#2      ------------------------------------------------------------
                                                                                   

consensus_13904#0      CGGCGCTCTCGAAGGCGTCGAGTTCCGCTTCCAGGAGAAGCTGATGGGCGGCGCGGCGGT 420
consensus_13904#1      ------------------------------------------------------------
consensus_13904#2      ------------------------------------------------------------
                                                                                   

consensus_13904#0      GGATGCGTACGGCGTGCCGCTCCCGGAGGAGACGCTCGCGGCGGCGCAGGCGTCGGACGC 480
consensus_13904#1      ------------------------------------------------------------
consensus_13904#2      ------------------------------------------------------------
                                                                                   

consensus_13904#0      CGTCCTCCTCGGCGCCATAGGAGGGTATAAGTGGGATAACAATGAGAAGCACCTCAAGCC 540
consensus_13904#1      ------------------------------------------------------------
consensus_13904#2      ------------------------------------------------------------
                                                                                   

consensus_13904#0      AGAGACTGGGTTGCTCCAGATACGCGCTGGGCTTGGCGTCTTTGCTAATCTGAGGCCAGC 600
consensus_13904#1      ------------------------------------------------------------
consensus_13904#2      ------------------------------------------------------------
                                                                                   

consensus_13904#0      TGCAGTGTTGCCTCAGTTAGTAGATGCATCTACTTTGAAAAAAGAAGTAGCTGAAGGAGT 660
consensus_13904#1      ------------------------------------------------------------
consensus_13904#2      ------------------------------------------------------------
                                                                                   

consensus_13904#0      CGACATCATGGTTGTTAGAGAGCTTACAGGAGGAATATACTTCGGCCAACCTAGGGGTTT 720
consensus_13904#1      ------------------------------------------------------------
consensus_13904#2      ------------------------------------------------------------
                                                                                   

consensus_13904#0      TGGAAAGAACGACAAAGGAGAAGACACTGGCTTCAACACTGAAGTATATTCAGCTTCTGA 780
consensus_13904#1      ------------------------------------------------------------
consensus_13904#2      ------------------------------------------------------------
                                                                                   

consensus_13904#0      GATTGATCGAATCACACGTGTTGCATTTGAGGTTGCTCGCAAGAGGCGCGGGAAGCTTTG 840
consensus_13904#1      ----------------------------------------------------AAGCTTTG 8
consensus_13904#2      ------------------------------------------------------------
                                                                                   

consensus_13904#0      CTCAGTAGACAAAGCGAATGTGCTTGAGGCATCTATGCTTTGGAGAAAACGGGTGACTTC 900
consensus_13904#1      CTCAGTAGACAAAGCGAATGTGCTTGAGGCATCTATGCTTTGGAGAAAACGGGTGACTTC 68
consensus_13904#2      ------------------------------------------------------------
                                                                                   

consensus_13904#0      ATTAGCTTCTGAATTCCCTGACATTGAGCTGTCGCACATGTATGTTGATAATGCAGCAAT 960
consensus_13904#1      ATTAGCTTCTGAATTCCCTGACATTGAGCTGTCGCACATGTATGTTGATAATGCAGCAAT 128
consensus_13904#2      ------------------------------------------------------------
                                                                                   

consensus_13904#0      GCAGCTTATTAGGAATCCTAAGCAGTTTGACACAATTGTCACAAACAATATTTTTGGTGA 1020
consensus_13904#1      GCAGCTTATTAGGAATCCTAAGCAGTTTGACACAATTGTCACAAACAATATTTTTGGTGA 188
consensus_13904#2      ------------------------------------------------------------
                                                                                   

consensus_13904#0      CATATTGTCTGATGAAGCATCAATGCTTACTGGAAGCATTGGAATGCTCCCATCTGCCAG 1080
consensus_13904#1      CATATTGTCTGATGAAGCATCAATGCTTACTGGAAGCATTGGAATGCTCCCATCTGCCAG 248
consensus_13904#2      ------------------------------------------------------------
                                                                                   

consensus_13904#0      TGTTGGTGAATCGGGACCAGGTCTTTTTGAGCCTATTCATGGTTCTGCGCCCGACATTGC 1140
consensus_13904#1      TGTTGGTGAATCGGGACCAGGTCTTTTTGAGCCTATTCATGGTTCTGCGCCCGACATTGC 308
consensus_13904#2      ---------------------------------------TNGTTCTGCGCCCGACATTGC 21
                                                              * *******************

consensus_13904#0      TGGGCA-GGATAAGGCAAACCCATTAGCTACAATTCTTAGTGCTGCCATGCTATTGCGGT 1199
consensus_13904#1      TGGGCA-GGATAAGGCAAACCCATTAGCTACAATTCTTAGTGCTGCCATGCTATTGCGGT 367
consensus_13904#2      TGGGCAAGGATAAGGCACACCCATTANCTACAATTCTTATNGCTGCCATGCTATTGCGGT 81
                       ****** ********** ******** ************  *******************

consensus_13904#0      ATGGCCTTGGAGAAGAAAATGCTGCAAAGAGAGTTGAAGCCGCAGTTACAGAGACACTAA 1259
consensus_13904#1      ATGGCCTTGGAGAAGAAAATGCTGCAAAGAGAGTTGAAGCCGCAGTTACAGAGACACTAA 427
consensus_13904#2      ATGGCCTTGGAGAANAAANTGCTGCAAATAGAGTTGAAGCCGCANTTACAGAGACACTAA 141
                       ************** *** ********* *************** ***************

consensus_13904#0      ACAACGGGTTCCGAACTGGGGACATATATTCTCCTGGAACGACCTTGGTCGGATGCAAGC 1319
consensus_13904#1      ACAACGGGTTCCGAACTGGGGACATATATTCTCCTGGAACGACCTTGGTCGGATGCAAGC 487
consensus_13904#2      ACAACGGNTTCCGAACTGGGGACATATATTCTCCTGGAACGACCTTGNTCGGATGCAAGC 201
                       ******* *************************************** ************

consensus_13904#0      GAATGGGAGAGGAAGTCCTGAAGACTGTAGAGTCGCAG-AGCGCGGTTGCTCTAAACTCG 1378
consensus_13904#1      GAATGGGAGAGGAAGTCCTGAAGACTGTAGAGTCGCAG-AGCGCGGTTGCTCTAAACTCG 546
consensus_13904#2      GAATGGGANAGGAANNCCTGAANACTGTTGAGTCGCATTAGCGCGGTTGCTCTAAACTCG 261
                       ******** *****  ****** ***** ********  *********************

consensus_13904#0      TAGCTCTCAGTATTTCAGCTGTAGCCCTGTGATTGTGATGGTCGAAAGCACATCAGAG-A 1437
consensus_13904#1      TAGCTCTCAGTATTTCAGCTGTAGCCCTGTGATTGTGATGGTCGAAAGCACATCAGAG-A 605
consensus_13904#2      NAGCTCTCAGGNTNTNANNTGTAGNCCTGTGATTGTGATGGTCGAAAGNNCATCANATTA 321
                        *********  * * *  ***** ***********************  ***** *  *

consensus_13904#0      TTGAGGCCGCCAAAGAATCACATTGATGCTGGACTTCCTGATG-TTTTTTGCCTGTCCTT 1496
consensus_13904#1      TTGAGGCCGCCAAAGAATCACATTGATGCTGGACTTCCTGATG-TTTTTTGCCTGTCCTT 664
consensus_13904#2      TTGAGGCCGCCAAACAATCACATTGATGCTGGACTTCCTGATGACTTTTTGCCTGACCTT 381
                       ************** ****************************  ********** ****

consensus_13904#0      GTGTCATTCTGTAACTTAGCGCATGAGTTGCCTCTTTCCCCTTTTCTCTTGTACCTTGAA 1556
consensus_13904#1      GTGTCATTCTGTAACTTAGGGCATGAGTTGCCTCTTTCCCCTTTTCTCTTGTACCTTGAA 724
consensus_13904#2      GTGTCATTCTGTAACTTAGCGCATGAGTTGCCTCTNTTCCCTTTTCTCTTGTACCTTGAA 441
                       ******************* *************** * **********************

consensus_13904#0      TTTTTTCTGTGGTGATGGTTGACTTAACTGTCTAGGCCAACAATAATAAAATGGGGTTGG 1616
consensus_13904#1      TTTTTTCTGTGGTGATGGTTGACTTATCTTTAAGGGCCAACAATAATAAAATGGGGTTGG 784
consensus_13904#2      TTCTNTCTGCGGTGATGGCTGACTTAACTGTCTANGCCNACAATAATNAAAAGNGGTT-- 499
                       ** * **** ******** ******* ** *    *** ******** *** * ****  

consensus_13904#0      TTCCATATACCTAGCTGAACAAGAGGTTGGTTGTGTAACGTACTAACGTTGGTTGAGTAT 1676
consensus_13904#1      TTCCAT--CCTTAAAGAGA----------------------------------------- 801
consensus_13904#2      ------------------------------------------------------------
                                                                                   

consensus_13904#0      ATATACTACCCCCATCTCCTGTTCATGTTGCTGTAAAAAA 1716
consensus_13904#1      ----------------------------------------
consensus_13904#2      ----------------------------------------