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Oryza sativa
cluster # 13906 cluster # 13906       Sequences # 14       consensus # 5


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_13906#0 length = 967 sequences # 8  
consensus_13906#1 length = 515 sequences # 3  
consensus_13906#2 length = 405 sequences # 1  
consensus_13906#3 length = 328 sequences # 1  
consensus_13906#4 length = 206 sequences # 1  

consensusID : consensus_13906#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 967
fasta sequence
                              [CGCAAAAGAACGAGAAATCTCCCGTCCCGTGGTCTCCTGACGAGCCGCGGCTGAACAGGGGAGGAGGCGCCGATCTCCATCCGGCGAGCAGAGCAGAGCAGGGGATCCTGTGACACGTACCAAATACAAAGAGCCCACAAAGGCACTAATCTACTGGCCTAATCTATCCAATCCAGGAGGCAACCCAGCCTGGTAATATATTGGATCGGTGCTTGAGGTTGAGGGGGAAGCAAAGC-ACGATCGACCAGGAACCAGGCAGGCAGCC-AAGGTGAGGAAGGAGAAGAAGCTGAGAGCCTCTCCCTGCTTAGACGTCCCTGTGCAGCGGCCTGGGAGTTTCCCAGCCTGCTCTCACCTGGCTGGCTAGATCCAGCGGTCATCCCTGCCACGAGGAATGGGCCTGTGGACGTTGCTGGAGGGCTTTTTGCTTCTCGCAAATGCATTAGCGATACTAAATGAAGACCGCTTTCTTGGCCCCAGAGGATGGAGCATGTCTGAAGTCTCAGGAAATGGACAAACCAAGTCACTGAAGGGTCAGATTGTAGGGCTCATCTATGCCACACAGTTCTTGAGGATGCCGTTGATAGCGCTTAATGTTCTTATCATTGTTGTGAAGTTGGTATCTGGCTGAGACTGCAGGTTTCAGTTCTGGGGTTTGATTTAATTTC-GTTACAGCGTAATGTAAAAGTAATCACAGTAAAGATTGCTGCAGTTATGTTAATTTGTCTCTAATGTATGCTGTTACTGTTCTAGTAAATTAATTCTGAGCCGCAAACTGTTTCTTTGGCACATAAACCATGAGAGTATGTGGTCTGGCGATGTGTTGTGAGGGCTCCTTTTCCTTATTTCTGTTCTGAATCAATCACACATTTGTTTGCTTGTTGGTGTGTGTTATGCTCAGGGGTTATCTGACATTCAGATTTTCAGCCTTCAGGTGCCGTTTTTAATGGAAATATTACCTACTAAAAAA]

[+] EMBL CF279612             [CGCAAAAGAACGAGAAATCTCCCGTCCCGTGGTCTCCTGACGAGCCGCGGCTGAACAGGGGAGGAGGCGCCGATCTCCATCCGGCGAGCAGAGCAGAGCAGGGGATCCTGTGACACGTACCAAATACAAAGAGCCCACAAAGGCACTAATCTACTGGCCTAATCTATCCAATCCAGGAGGCAACCCAGCCTGGTAATATATTGGATCGGTGCTTGAGGTTGAGGGGGAAGCAAAGC ACGATCGACCAGGAACCAGGCAGGCAGCCAAAGGTGAGGAAGGAGAAGAAGCTGAGAGCCTCTCCCTGCTTAGACGTCCCTGTGCAGCGGCCTGGGAGTTTCCCAGCCTGCTCTCACCTGGCTGGCTAGATCCAGCGGTCATCCCTGCCACGAGGAATGGGCCTGTGGACGTTGCTGGAGGGCTTTTTGCTTCTCGCAAATGCATTAGCGATACTAAATGAAGACCGCTTTCTTGGCCCCAGAGGATGGAGCATGTCTGAAGTCTCAGGAAATGGACAAACCAAGTCACTGAAGGGTCAGATTGTAGGGCTCATCTATGCCACACAGTTCTTGAGGATGCCGTTGATAGCGCTTAAT                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL OSR27221A            [                      CGTCCCGTGGTNTCCTNACGAGCCGCGGNTGAACAGGGGAGGAGGCGCCGNTCTCCATCCGGCGAGCAGAGCAGAGCAGGGGATCCTGTGACACGTACCAAATACAAAGAGCCCACAAAGGCACTAATCTACTGGCCTAATCTATCCAATCCAGGAGGCAACCCAGCCTGGTAATATATTGGATCGGTGCTNGAGGTTGAGGGGGAAGCAAAGC ACGATCGACCAGGAACCAGGCAGGCAGCC AAGGTGAGGAAGGAGAAGAAGCTGAGAGNCTCTCCCTGCTTAGACGTCCCTGTGCAGCGGCCTGGGAGTTTCCCAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL OSR2295A             [                      CGTCCCGTGGTCTCCTGACGAGCCGCGGCTGAACAGGGGAGGAGGCGCCGATCTCCATCCGGCGAGCAGAGCAGAGCAGGGGATCCTGTGACACGTACCAAATACAAAGAGCCCACAAAGGCACTAATCTACTGGCCTAATCTATCCAATCCAGGAGGCAACCCAGCCTGGTAATATATTGGNTCGGTGCTTGAGGTTGAGGGGGAAGCAAAGC ACGATCGACCAGGAACCAGGCAGGCAGCC AAGGTGAGGAAGGAGAAGAAGCTGAGAGCCTCTCCCTGCTTAGACGTCCCTGTGCAGCGGCCTNGGAGTTTCCCAGCCTGCTCTCACCTGGCTGGCTAGATCCAGCGGTCATCCCTGCCACGAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL AU077519             [                                               CGGCTGAACAGGGGAGGAGGCGCCGATCTCCATCCGGCGAGCAGAGCAGAGCAGGGGATCCTGTGACACGTACCAAATACAAAGAGCCCACAAAGGCACTAATCTACTGGCCTAATCTATCCAATCCAGGAGGCAACCCAGCCTGGTAATATATTGGATCGGTGCTTGAGGTTGAGGGGGAAGCAAAGC ACGATCGACCAGGAACCAGGCAGGCAGCC AAGGTGAGGAAGGAGAAGAAGCTGAGAGCCTCTCCCTGCTTAGACGTCCCTGTGCAGCGGCCTGGGAGTTTCCCAGCCTGCTCTCACCTGGCTGGCTAGATCCAGCGGTCATCCCTGCCACGAGGAATGGGCCTGTGGACGTTGCTGGAGGGCTTTTTGCTTCTCGCAAATGCATTA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL AU077520             [                                                                                                                                                                                                                                  GAAGCAAAGCNACGATCGACCAGGAACCAGGCAGGCAGCC AAGGTGAGGAAGGAGAAGAAGCTGAGA CCTCNCCCTGCTTAGACGTCCCTGTGCACCGGCCTGGGAGTTTCCCAGCCTGCTCTCACCTGGCTGGCTAGATCCAGCGGTCATCCCTGCCACGAGGAATGGGCCTGTGGACGTTGCTGGAGGGCTTTTTGCTTCTCGCAAATGCATTAGCGATACTAAATGAAGNCCGCTTTCTTGGCCCCAGAGGATGGAGCATGTCTGAAGTCTCAGGAAATGGACAAACCAAGTCACTGAAGGGTCAGATTGTAGGGCTCATCTATGCCACACAGTTCTTGAGGATGCCGTTGATAGCGCTTAATGTTCTTATCATTGTTGTGAAGTTGGTATCTGGCTGAGACTGCAGGTTTCAGTTCTGGGGTTTGATTTAATTTCTGTTACAGCGTAATGTAAAAGTAATCACAGTAAAGATTGCTGCAGTTATGTTAATTTGTCTCTAATGTATGCTGTTACTGTTCTAGTAAATTAATTCTGAGCCGCAAACTGTTTCTTTGGCACATAAAaaa                                                                                                                                                                            ]
[+] EMBL CA999699             [                                                                                                                                                                                                                                                                                                                                                                                                 CACGAGGAATGGGCCTGTGGACGTTGCTGGAGGGCTTTTTGCTTCTCGCAAATGCATTAGCGATACTAAATGAAGACCGCTTTCTTGGCCCCAGAGGATGGAGCATGTCTGAAGTCTCAGGAAATGGACAAACCAAGTCACTGAAGGGTCAGATTGTAGGGCTCATCTATGCCACACAGTTCTTGAGGATGCCGTTGATAGCGCTTAATGTTCTTATCATTGTTGTGAAGTTGGTATCTGGCTGAGACTGCAGGTTTCAGTTCTGGGGTTTGATTTAATTTC GTTACAGCGTAATGTAAAAGTAATCACAGTAAAGATTGCTGCAGTTATGTTAATTTGTCTCTAATGTATGCTGTTACTGTTCTAGTAAA                                                                                                                                                                                                                     ]
[+] EMBL AU095487             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  GCGTAATGTAAANGTAATCACAGTAAAGATTGCTGCAGTTATGTTAATTTGNCTCTAATGTATGCTGTTACTGTTCTAGTAAATTAATTCTGAGCCGCAAACTGTTTCTTTGGCACATAAACCATGAGAGTATGTGGTCTGGCGATGTGTTGTGAGGGCTCCTTTTCCTTATTTCTGTTCTGAATCAATCACACATTTGTTTGCTTGTTGGTGTGTGTTATGCTCAGGGGTTATCTGACATTCAGATTTTCAGCCTTCAGGTGCCGTTTTTAATGGAAATATTACCTACTAAAAA ]
[+] EMBL AU082701             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            TCTAGTAAATTAATTCTGAGCCGCAAACTGTTTCTTTGGCACATAAACCATGAGAGTATGTGGTCTGGCGATGTGTTGTGAGGGCTCCTTTTCCTTATTTCTGTTCTGAATCAATCACACATTTGTTTGCTTGTTGGTGTGTGTTATGCTCAGGGGTTATCTGACATTCAGATTTTCAGCCTTCAGGTGCCGTTTTTAATGGAAATATTACCTACTAAAAAA]


>consensus_13906#0 CGCAAAAGAACGAGAAATCTCCCGTCCCGTGGTCTCCTGACGAGCCGCGGCTGAACAGGG GAGGAGGCGCCGATCTCCATCCGGCGAGCAGAGCAGAGCAGGGGATCCTGTGACACGTAC CAAATACAAAGAGCCCACAAAGGCACTAATCTACTGGCCTAATCTATCCAATCCAGGAGG CAACCCAGCCTGGTAATATATTGGATCGGTGCTTGAGGTTGAGGGGGAAGCAAAGCACGA TCGACCAGGAACCAGGCAGGCAGCCAAGGTGAGGAAGGAGAAGAAGCTGAGAGCCTCTCC CTGCTTAGACGTCCCTGTGCAGCGGCCTGGGAGTTTCCCAGCCTGCTCTCACCTGGCTGG CTAGATCCAGCGGTCATCCCTGCCACGAGGAATGGGCCTGTGGACGTTGCTGGAGGGCTT TTTGCTTCTCGCAAATGCATTAGCGATACTAAATGAAGACCGCTTTCTTGGCCCCAGAGG ATGGAGCATGTCTGAAGTCTCAGGAAATGGACAAACCAAGTCACTGAAGGGTCAGATTGT AGGGCTCATCTATGCCACACAGTTCTTGAGGATGCCGTTGATAGCGCTTAATGTTCTTAT CATTGTTGTGAAGTTGGTATCTGGCTGAGACTGCAGGTTTCAGTTCTGGGGTTTGATTTA ATTTCGTTACAGCGTAATGTAAAAGTAATCACAGTAAAGATTGCTGCAGTTATGTTAATT TGTCTCTAATGTATGCTGTTACTGTTCTAGTAAATTAATTCTGAGCCGCAAACTGTTTCT TTGGCACATAAACCATGAGAGTATGTGGTCTGGCGATGTGTTGTGAGGGCTCCTTTTCCT TATTTCTGTTCTGAATCAATCACACATTTGTTTGCTTGTTGGTGTGTGTTATGCTCAGGG GTTATCTGACATTCAGATTTTCAGCCTTCAGGTGCCGTTTTTAATGGAAATATTACCTAC TAAAAAA



consensusID : consensus_13906#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 515
fasta sequence
                              [AACAGGTCGAGCAAGCGGCGAAGGGAAAAGAAGCGGAGATCGTCCCCTCCCCGCCGCCGACTGGACGCATATGCGCCACGGCTGCCGGTGAGCTTCCCCGCCGGCGACGAGTGGACCTCGCCCCACGCCCGGCTAGATCCGGTGCCACCCCCGCCACCACGAGGAATGTTCTTCTGGCCGTTCCTAGAGGGTCTTTTGATTCTTGCAAATGCATTGGCGATACTAAATGAAGACCGCTTTCTTGCACCCAGAGGATGGAGCATGTCTGAAGTCTCAGGAAATGGACGATCAAAGTCATTGAAGGGTCAGATTGTAGGACTCATATATGCCACACAGTTCTTTAGGATGCCGTTGATAGCACTTAATGTTCTTATCATTGTTGTGAAGTTGGTGTCAGGCTGATACTATGAAGGTTTCAGTTGTTGGGCTTGATTGATTTCAATTTCAATGTGATGTAAAAGTATTCACGCTAAATATTTCTGCAGCTATATTAATTTGTCTATATNANAAAAAAA]

[+] EMBL AK099570             [AACAGGTCGAGCAAGCGGCGAAGGGAAAAGAAGCGGAGATCGTCCCCTCCCCGCCGCCGACTGGACGCATATGCGCCACGGCTGCCGGTGAGCTTCCCCGCCGGCGACGAGTGGACCTCGCCCCACGCCCGGCTAGATCCGGTGCCACCCCCGCCACCACGAGGAATGTTCTTCTGGCCGTTCCTAGAGGGTCTTTTGATTCTTGCAAATGCATTGGCGATACTAAATGAAGACCGCTTTCTTGCACCCAGAGGATGGAGCATGTCTGAAGTCTCAGGAAATGGACGATCAAAGTCATTGAAGGGTCAGATTGTAGGACTCATATATGCCACACAGTTCTTTAGGATGCCGTTGATAGCACTTAATGTTCTTATCATTGTTGTGAAGTTGGTGTCAGGCTGATACTATGAAGGTTTCAGTTGTTGGGCTTGATTGATTTCAATTTCAATGTGATGTAAAAGTATTCACGCTAAATATTTCTGCAGCTATATTA                      ]
[+] EMBL AK063044             [  CAGGTCGAGCAAGCGGCGAAGGGAAAAGAAGCGGAGATCGTCCCCTCCCCGCCGCCGACTGGACGCATATGCGCCACGGCTGCCGGTGAGCTTCCCCGCCGGCGACGAGTGGACCTCGCCCCACGCCCGGCTAGATCCGGTGCCACCCCCGCCACCACGAGGAATGTTCTTCTGGCCGTTCCTAGAGGGTCTTTTGATTCTTGCAAATGCATTGGCGATACTAAATGAAGACCGCTTTCTTGCACCCAGAGGATGGAGCATGTCTGAAGTCTCAGGAAATGGACGATCAAAGTCATTGAAGGGTCAGATTGTAGGACTCATATATGCCACACAGTTCTTTAGGATGCCGTTGATAGCACTTAATGTTCTTATCATTGTTGTGAAGTTGGTGTCAGGCTGATACTATGAAGGTTTCAGTTGTTGGGCTTGATTGATTTCAATTTCAATGTGATGTAAAAGTATTCACGCTAAATATTTCTGCAGCTATAT                        ]
[+] EMBL CA754212             [                                   GAGATCGTCCCCTCCCCGCCGCCGACTGGACGCATATGCGCCACGGCTGCCGGTGAGCTTCCCCGCCGGCGACGAGTGGACCTCGCCCCACGCCCGGCTAGATCCGGTGCCACCCCCGCCACCACGAGGAATGTTCTTCTGGCCGTTCCTAGAGGGTCTTTTGATTCTTGCAAATGCATTGGCGATACTAAATGAAGACCGCTTTCTTGCACCCAGAGGATGGAGCATGTCTGAAGTCTCAGGAAATGGACGATCAAAGTCATTGAAGGGTCAGATTGTAGGACTCATATATGCCACACAGTTCTTTAGGATGCCGTTGATAGCACTTAATGTTCTTATCATTGTTGTGAAGTTGGTGTCAGGCTGATACTATGAAGGTTTCAGTTGTTGGGCTTGATTGATTTCAATTTCAATGTGATGTAAAAGTATTCACGCTAAATATTTCTGCAGCTATATTAATTTGTCTATATNANAAAAAAA]


>consensus_13906#1 AACAGGTCGAGCAAGCGGCGAAGGGAAAAGAAGCGGAGATCGTCCCCTCCCCGCCGCCGA CTGGACGCATATGCGCCACGGCTGCCGGTGAGCTTCCCCGCCGGCGACGAGTGGACCTCG CCCCACGCCCGGCTAGATCCGGTGCCACCCCCGCCACCACGAGGAATGTTCTTCTGGCCG TTCCTAGAGGGTCTTTTGATTCTTGCAAATGCATTGGCGATACTAAATGAAGACCGCTTT CTTGCACCCAGAGGATGGAGCATGTCTGAAGTCTCAGGAAATGGACGATCAAAGTCATTG AAGGGTCAGATTGTAGGACTCATATATGCCACACAGTTCTTTAGGATGCCGTTGATAGCA CTTAATGTTCTTATCATTGTTGTGAAGTTGGTGTCAGGCTGATACTATGAAGGTTTCAGT TGTTGGGCTTGATTGATTTCAATTTCAATGTGATGTAAAAGTATTCACGCTAAATATTTC TGCAGCTATATTAATTTGTCTATATNANAAAAAAA



consensusID : consensus_13906#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 405
fasta sequence
                              [AACAGTGCAACACGTCCCGGCCATACATCGGACCAGTGTGCCTCGAGACGAAGCAAAGAACAACAGGTCGAGCAAGCGGCGAAGGGAAAAGAAGCGGAGATCGTCCCCTCCCCGNCGCCGACTGGACGCATATGCGCCACGGCTGCCGGTGAGCTTCCCCGNCGGCGACGAGTGGACCTCGNCCCACGCCCGGCTAGATCCGGTGCCACCCCCGCCACCACGAGGAATGTTCTTCTGGCCGTTCCTAGAGGGTCTTTTGATTCTTGCAAATGCATTGGCGATACTAAATGAAGACCGCTTTCTTGCACCCAGAGGATGGTTTCCTTGGNAATTTTTCCNTCCATCCCAAAATGGCCGAGGTNAGNTAACNTGGCCTATGGGGTACCNATNTTGGNGGCCTCCGTC]

[+] EMBL OS1686A              [AACAGTGCAACACGTCCCGGCCATACATCGGACCAGTGTGCCTCGAGACGAAGCAAAGAACAACAGGTCGAGCAAGCGGCGAAGGGAAAAGAAGCGGAGATCGTCCCCTCCCCGNCGCCGACTGGACGCATATGCGCCACGGCTGCCGGTGAGCTTCCCCGNCGGCGACGAGTGGACCTCGNCCCACGCCCGGCTAGATCCGGTGCCACCCCCGCCACCACGAGGAATGTTCTTCTGGCCGTTCCTAGAGGGTCTTTTGATTCTTGCAAATGCATTGGCGATACTAAATGAAGACCGCTTTCTTGCACCCAGAGGATGGTTTCCTTGGNAATTTTTCCNTCCATCCCAAAATGGCCGAGGTNAGNTAACNTGGCCTATGGGGTACCNATNTTGGNGGCCTCCGTC]


>consensus_13906#2 AACAGTGCAACACGTCCCGGCCATACATCGGACCAGTGTGCCTCGAGACGAAGCAAAGAA CAACAGGTCGAGCAAGCGGCGAAGGGAAAAGAAGCGGAGATCGTCCCCTCCCCGNCGCCG ACTGGACGCATATGCGCCACGGCTGCCGGTGAGCTTCCCCGNCGGCGACGAGTGGACCTC GNCCCACGCCCGGCTAGATCCGGTGCCACCCCCGCCACCACGAGGAATGTTCTTCTGGCC GTTCCTAGAGGGTCTTTTGATTCTTGCAAATGCATTGGCGATACTAAATGAAGACCGCTT TCTTGCACCCAGAGGATGGTTTCCTTGGNAATTTTTCCNTCCATCCCAAAATGGCCGAGG TNAGNTAACNTGGCCTATGGGGTACCNATNTTGGNGGCCTCCGTC



consensusID : consensus_13906#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 328
fasta sequence
                              [TTCCGNGACGCNTGGGCACAAAGGCACTAATCTACTGGCCTAATCTATCCAATCCAGGAGGCAACCCAANCTGGTAATATATTGGNTCGGTGCTTGAGGTTGAGGGGGAAGCAAAGCACGATCGACCAGGAACCAGGCAGGCAGCCAAGGTGAGGAAGGAGAAGAAGCTGAGAGCCTCTCCCTGCTTAGACGTCCCTNTGCAGCGGCCTGGGAGTTTCCCAGCCTGCTCTCACCTGGCTGGCTAGATCCAGCGGTCATCCCTTGCCACGAGGAATGGNCCTGTGGACGTTGCTGGAGGGCTTTTTGCTTCTCGCAAATTNATTAGNGA]

[+] EMBL OS1454A              [TTCCGNGACGCNTGGGCACAAAGGCACTAATCTACTGGCCTAATCTATCCAATCCAGGAGGCAACCCAANCTGGTAATATATTGGNTCGGTGCTTGAGGTTGAGGGGGAAGCAAAGCACGATCGACCAGGAACCAGGCAGGCAGCCAAGGTGAGGAAGGAGAAGAAGCTGAGAGCCTCTCCCTGCTTAGACGTCCCTNTGCAGCGGCCTGGGAGTTTCCCAGCCTGCTCTCACCTGGCTGGCTAGATCCAGCGGTCATCCCTTGCCACGAGGAATGGNCCTGTGGACGTTGCTGGAGGGCTTTTTGCTTCTCGCAAATTNATTAGNGA]


>consensus_13906#3 TTCCGNGACGCNTGGGCACAAAGGCACTAATCTACTGGCCTAATCTATCCAATCCAGGAG GCAACCCAANCTGGTAATATATTGGNTCGGTGCTTGAGGTTGAGGGGGAAGCAAAGCACG ATCGACCAGGAACCAGGCAGGCAGCCAAGGTGAGGAAGGAGAAGAAGCTGAGAGCCTCTC CCTGCTTAGACGTCCCTNTGCAGCGGCCTGGGAGTTTCCCAGCCTGCTCTCACCTGGCTG GCTAGATCCAGCGGTCATCCCTTGCCACGAGGAATGGNCCTGTGGACGTTGCTGGAGGGC TTTTTGCTTCTCGCAAATTNATTAGNGA



consensusID : consensus_13906#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 206
fasta sequence
                              [TCTGGCTGAGACTGCAGGTTTCAGTTCTGGGGTTTGATTTAATTTCTGTTACAGCGTAATGTAAAAGTAATCACAGTANAGATTGCTGCAGTTATGTTAATTTGTCTCTAATGTATGCTGTTACTGTTCTAGTAAATTAATTCTGAGCCGCAAAAAAAAAAAAAAAGTGNCNTNCAGCTTTTGNNCCCTTTAGTGAAAAAAAATGC]

[+] EMBL AU091841             [TCTGGCTGAGACTGCAGGTTTCAGTTCTGGGGTTTGATTTAATTTCTGTTACAGCGTAATGTAAAAGTAATCACAGTANAGATTGCTGCAGTTATGTTAATTTGTCTCTAATGTATGCTGTTACTGTTCTAGTAAATTAATTCTGAGCCGCAAAAAAAAAAAAAAAGTGNCNTNCAGCTTTTGNNCCCTTTAGTGAAAAAAAATGC]


>consensus_13906#4 TCTGGCTGAGACTGCAGGTTTCAGTTCTGGGGTTTGATTTAATTTCTGTTACAGCGTAAT GTAAAAGTAATCACAGTANAGATTGCTGCAGTTATGTTAATTTGTCTCTAATGTATGCTG TTACTGTTCTAGTAAATTAATTCTGAGCCGCAAAAAAAAAAAAAAAGTGNCNTNCAGCTT TTGNNCCCTTTAGTGAAAAAAAATGC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13906#0      CGCAAAAGAACGAGAAATCTCCCGTCCCGTGGTCTCCTGACGAGCCGCGGCTGAACAGGG 60
consensus_13906#4      ------------------------------------------------------------
consensus_13906#3      ------------------------------------------------------------
consensus_13906#1      ------------------------------------------------------------
consensus_13906#2      ------------------------------------------------------------
                                                                                   

consensus_13906#0      GAGGAGGCGCCGATCTCCATCCGGCGAGCAGAGCAGAGCAGGGGATCCTGTGACACGTAC 120
consensus_13906#4      ------------------------------------------------------------
consensus_13906#3      ------------------------------------------------------------
consensus_13906#1      ------------------------------------------------------------
consensus_13906#2      ------------------------------------------------------------
                                                                                   

consensus_13906#0      CAAATACAAAGAGCCCACAAAGGCACTAATCTACTGGCCTAATCTATCCAATCCAGGAGG 180
consensus_13906#4      ------------------------------------------------------------
consensus_13906#3      ------------------------------------------------------------
consensus_13906#1      ------------------------------------------------------------
consensus_13906#2      ------------------------------------------------------------
                                                                                   

consensus_13906#0      CAACCCAGCCTGGTAATATATTGGATCGGTGCTTGAGGTTGAGGGGGAAGCAAAGCACGA 240
consensus_13906#4      ------------------------------------------------------------
consensus_13906#3      ------------------------------------------------------------
consensus_13906#1      ------------------------------------------------------------
consensus_13906#2      ------------------------------------------------------------
                                                                                   

consensus_13906#0      TCGACCAGGAACCAGGCAGGCAGCCAAGGTGAGGAAGGAGAAGAAGCTGAGAGCCTCTCC 300
consensus_13906#4      ------------------------------------------------------------
consensus_13906#3      ------------------------------------------------------------
consensus_13906#1      ------------------------------------------------------------
consensus_13906#2      ------------------------------------------------------------
                                                                                   

consensus_13906#0      CTGCTTAGACGTCCCTGTGCAGCGGCCTGGGAGTTTCCCAGCCTGCTCTCACCTGGCTGG 360
consensus_13906#4      ------------------------------------------------------------
consensus_13906#3      ------------------------------------------------------------
consensus_13906#1      ------------------------------------------------------------
consensus_13906#2      ------------------------------------------------------------
                                                                                   

consensus_13906#0      CTAGATCCAGCGGTCATCCCTGCCACGAGGAATGGGCCTGTGGACGTTGCTGGAGGGCTT 420
consensus_13906#4      ------------------------------------------------------------
consensus_13906#3      ------------------------------------------------------------
consensus_13906#1      ------------------------------------------------------------
consensus_13906#2      ------------------------------------------------------------
                                                                                   

consensus_13906#0      TTTGCTTCTCGCAAATGCATTAGCGATACTAAATGAAGACCGCTTTCTTGGCCCCAGAGG 480
consensus_13906#4      ------------------------------------------------------------
consensus_13906#3      ------------------------------------------------------------
consensus_13906#1      ------------------------------------------------------------
consensus_13906#2      ------------------------------------------------------------
                                                                                   

consensus_13906#0      ATGGAGCATGTCTGAAGTCTCAGGAAATGGACAAACCAAGTCACTGAAGGGTCAGATTGT 540
consensus_13906#4      ------------------------------------------------------------
consensus_13906#3      ------------------------------------------------------------
consensus_13906#1      ------------------------------------------------------------
consensus_13906#2      ------------------------------------------------------------
                                                                                   

consensus_13906#0      AGGGCTCATCTATGCCACACAGTTCTTGAGGATGCCGTTGATAGCGCTTAATGTTCTTAT 600
consensus_13906#4      ------------------------------------------------------------
consensus_13906#3      ------------------------------------------------------------
consensus_13906#1      ------------------------------------------------------------
consensus_13906#2      ------------AACAGTGCAACACGTCCCGGCCATACATCGGACCAGTGTGCCTCGAGA 48
                                                                                   

consensus_13906#0      CATTGTTGTGAAGTTGGTATCTGGCTGAGACTGCAGGTTTCAGTTCTGGGGTTTGATTTA 660
consensus_13906#4      -------------------TCTGGCTGAGACTGCAGGTTTCAGTTCTGGGGTTTGATTTA 41
consensus_13906#3      -------------TTCCGNGACGCNTGGGCACAAAGGCACTAATCTACTGGCCTAATCTA 47
consensus_13906#1      -------------AACAGGTCGAGCAAGCGGCGAAGGGAAAAGAAGCGGAGATCGTCCCC 47
consensus_13906#2      CGAAGCAAAGAACAACAGGTCGAGCAAGCGGCGAAGGGAAAAGAAGCGGAGATCGTCCCC 108
                                                         ***    *        *         

consensus_13906#0      ATTTC-GTTACAGCGTAATGTAAAAGTAATCACAGTAAAGAT----TGCTGCAGTTATGT 715
consensus_13906#4      ATTTCTGTTACAGCGTAATGTAAAAGTAATCACAGTANAGAT----TGCTGCAGTTATGT 97
consensus_13906#3      --TCCAATCCAGGAGGCAACCCAANCTGGTAATATATTGGNT----CGGTGCT-TGAGGT 100
consensus_13906#1      TCCCCGCCGCCGACTGGACGCATATGCGCCACGGCTGCCGGTGAGCTTCCCCGCCGGCGA 107
consensus_13906#2      TCCCCGNCGCCGACTGGACGCATATGCGCCACGGCTGCCGGTGAGCTTCCCCGNCGGCGA 168
                           *            *     *               * *         *      * 

consensus_13906#0      TAATTTGTCTCTAATGTATGCT-GTTACTGTTCTAGTAAATTAATTCTGAGCCGCAAACT 774
consensus_13906#4      TAATTTGTCTCTAATGTATGCT-GTTACTGTTCTAGTAAATTAATTCTGAGCCGCAAAA- 155
consensus_13906#3      TGAGGGGGAAGCAAAGCACGATCGACCAGGAACCAGGCAGGCAG--CCAAGGTGAGGAAG 158
consensus_13906#1      CGAGTGGACCTCGCCCCACGCCCGGCTAGATCCGGTGCCACCCCCGCCACCACGAGGAAT 167
consensus_13906#2      CGAGTGGACCTCGNCCCACGCCCGGCTAGATCCGGTGCCACCCCCGCCACCACGAGGAAT 228
                         *   *          * *   *        *             *      *   *  

consensus_13906#0      GTTTCTTT-GGCACATAAACCATGAGAGTATGTGGTCTGGCGATGTGTTGTGAGGGCTCC 833
consensus_13906#4      ------------AAAAAAAAAAAGTGNCNTNCAGCTTTTGNNCCCTTTAGTGAAAAAAAA 203
consensus_13906#3      G--------AGAAGAAGCTGAGAGCCTCTCCCTGCTTAGACGTCCCTNTGCAGCGGCCTG 210
consensus_13906#1      GTTCTTCTGGCCGTTCCTAGAGGGTCTTTTGATTCTTGCAAATGCATTGGCGATACTAAA 227
consensus_13906#2      GTTCTTCTGGCCGTTCCTAGAGGGTCTTTTGATTCTTGCAAATGCATTGGCGATACTAAA 288
                                              *           *             *          

consensus_13906#0      TTT-TCCTTATTTCTGTTCTGAATCAATCACACATTTGTTTGCTTGTTGGTGTGTGTTAT 892
consensus_13906#4      TGC--------------------------------------------------------- 206
consensus_13906#3      GGA-GTTTCCCAGCCTGCTCTCACCTGGCTGGCTAGATCCAGCGGTCATCCCTTGCCACG 269
consensus_13906#1      TGAAGACCGCTTTCTTGCACCCAGAGGATGGAGCATGTCTGAAGTCTCAGGAAATGGACG 287
consensus_13906#2      TGAAGACCGCTTTCTTGCACCCAGAGGATGG--TTTCCTTGGNAATTTTTCCNTCCATC- 345
                                                                                   

consensus_13906#0      GCTCAGGGGTTATCTGACATTCAGATTTTCAGCCTTCAGGTGCCGTTTTTAATGGAAATA 952
consensus_13906#4      ------------------------------------------------------------
consensus_13906#3      AGGAATGGNCCTGTGGACGTTGCTGGAGGGCTTTTTGCTTCTCGCAAATTNATTAGNGA- 328
consensus_13906#1      ATCAAAGTCATTGAAGGGTCAGATTGTAGGACTCATATATGCCACACAGTTCTTTAGGAT 347
consensus_13906#2      -CCAAAATGGCCGA--GGTNAGNTAACNTGGCC--TATGGGGTAC-CNATNTTGGNGGCC 399
                                                                                   

consensus_13906#0      TTACCTACTAAAAAA--------------------------------------------- 967
consensus_13906#4      ------------------------------------------------------------
consensus_13906#3      ------------------------------------------------------------
consensus_13906#1      GCCGTTGATAGCACTTAATGTTCTTATCATTGTTGTGAAGTTGGTGTCAGGCTGATACTA 407
consensus_13906#2      TCCGTC------------------------------------------------------ 405
                                                                                   

consensus_13906#0      ------------------------------------------------------------
consensus_13906#4      ------------------------------------------------------------
consensus_13906#3      ------------------------------------------------------------
consensus_13906#1      TGAAGGTTTCAGTTGTTGGGCTTGATTGATTTCAATTTCAATGTGATGTAAAAGTATTCA 467
consensus_13906#2      ------------------------------------------------------------
                                                                                   

consensus_13906#0      ------------------------------------------------
consensus_13906#4      ------------------------------------------------
consensus_13906#3      ------------------------------------------------
consensus_13906#1      CGCTAAATATTTCTGCAGCTATATTAATTTGTCTATATNANAAAAAAA 515
consensus_13906#2      ------------------------------------------------
                                                                       




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)