These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13909#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 707 fasta sequence [CGATTAAAGTTGGGTAACGCCCAGGTTTTCCCNAGTCACCGACCNTTGTAAAACGACGCCCATTNACCNCCCGTAATNCGACTCACTATTAGGCCGAAATTGGTTACCGGCCCCCCCCTCCGAGGTCGACCCACGCGTCCGCTCTATGAGCCCATAGCCCGGAGGTCTCCAGCAGGGCTTCCTCCATGGGGTGGCTCCACTCCCTCTTCTCCCCTCTGAGGAAGCTCTGGGTTCTGCGCATTCCGCACNTCGAAACCGGAGGGGAATGCACATTCTGTACAAGGATGTCAAGTCTTGCCAGGATGAGGATGTGCATGTTCTATGGTCCATATTGGTGGATTCGCACCGTCACCCAGCTCTGATGAAGCTGAAGCTCTAGGGTTCTTGAAGAACAGAGCAAGGATGATGGCAGCTATGAATTTTCTGTGATTTTGCCGTTTACTCGGCCATTACCT-CTGTATAGAACAGCATGATTTCAATGGCATCAAGATTGAAGGGGC-AAAAAAAATAGAAGGACAAAATAGGCAGATGTTTATATGCCTTTCTTGTGTGTATTGATGTTTCTGTCTTGTGGCTTTGTGAGTGAGGTTGAAATGTCACCTTTGGTTGATGTGAATGCGAGTGAGGTTGAGTTTAATGTATTTGTATATACAGATGCTCTGATGCCTTACCTAATGGTATGAAGTTTGGTAGCAAAAAAAAAAAAA] [+] EMBL AU055736 [CGATTAAAGTTGGGTAACGCCCAGGTTTTCCCNAGTCACCGACCNTTGTAAAACGACGCCCATTNACCNCCCGTAATNCGACTCACTATTAGGCCGAAATTGGTTACCGGCCCCCCCCTCCGAGGTCGACCCACGCGTCCGCTCTATGAGCCCATAGCCCGGAGGTCTCCAGCAGGGCTTCCTCCATGGGGTGGCTCCACTCCCTCTTCTCCCCTCTGAGGAAGCTCTGGGTTCTGCGCATTCCGCACNTCGAAACCGGAGGGGAATGCACATTCTGTACAAGGATGTCAAGTCTTGCCAGGATGAGGATGTGCATGTTCTATGGTCCATATTGGTGGATTCGCACCGTCACCCAGCTCTGATGAAGCTGAAGCTCTAGGGTTCTTGAAGAACAGAGCAAGGATGATGGCAGCTATGAATTTTCTGTGATTTTGCCGTTTACTCGGCCATTACCT CTGTATAGAACAGCATGATTTCAATGGCATCAAGATTGAAGGGGCAAAAAAAAATAGAAGGACAAAATAGGCAGATGTTTATATGCCTTTCTTGTGTGTATTGATGTTTCTGTCTTGTGGCTTTGTGAGTGAGGTTGAAATGTCACCTTTGGTTGATGTGAATGCGAGTGAGGTTGAGTTTAATGTATTTGTATATACAGATGCTCTGATGCCTTACCTAATGGTATGAAGTTTGGTAGCAAAAAAAAAAAAA] [-] EMBL CF300389 [ ACATTCTGTACAAGGATGTCAAGTCTTGCCAGGATGAGGATGTGCATGTTCTATGGTCCATATTGGTGGATTCGCACCGTCACCCAGCTTTGATGAAGCTGAAGCTCTAGGGTTCTTGAAGAACAGAGCAAGGATGATGGCAGCTATGAATTTTCTGTGATTTTGCCGTTTACTCGGCCATTACCT CTGTATAGACCAGCATGATTTCAATGGCATCAAGATTGAAGGGGC AAAAAAAATAGAAGGACAAAATAGGCACATGTTTATATGCCTTTCTTGTGTGTATTGATGTTTCTGTCTTGTGGCTTTGTGAGTGAGGTTGAAATGTCACCTTTGGTTGATGTGAATGCGAGTGAGGTTGAGTTTAATGTATTTGTATATACACATGCTCTGATGCCTTACCTAATGGTATGAAGTTTGGTAGCAAAAAAA ] [+] EMBL AU055995 [ CAAGGATGTCAAGTCTTGCCCGGATGAGGATGTGCATGTTCTATGGTCCATATTGGTGGATTCGCACCGTCACCCAGCTCTGATGAAGCTGAAGCTCTAGGGTTCTTGAAGAACAGAGCAAGGATGATGGCAGCTATGAATTTTCTGTGATTTTGCCGTTTACTCGGCCATTACCT CTGTATAGAACAGCATGATTTCAATGGCATCAAGATTGAAGGGGCAAAAAAAAATAGAAGGACAAAATAGGCAGATGTTTATATGCCTTTCTTGTGTGTATTGATGTTTCTGTCTTGTGGCTTTGTGAGTGAGGTTGAAATGTCACCTTTGGTTGATGTGAATGCGAGTGAGGTTGAGTTTAATGTATTTGTATATACAGATGCTCTGATGCCTTACCTAATGGTATGAAGTTTGGTNGCAAAAAAAAAAAAA] [+] EMBL AU096316 [ TTGGTGGATTCGCACCGTCACCCAGCTCTGATGAANCTGAAGCTCTAGGGTTCTTGAAGAACAGAGCAAGGATGATGGCAGCTATGAATTTTCTGTGATTTTGCCGTTTACTCGGCCATTACCTCCTGTATAGAACAGCATGATTTCAATGGCATCAAGATTGAAGGGGC AAAAAAAATAGAAGGACAAAATAGGCAGATGTTTATATGCCTTTCTTGTGTGTATTGATGTTTCTGTCTTGTGGCTTTGTGAGTGAGGTTGAAATGTCACCTTTGGTTGATGTGAATGCGAGTGAGGTTGAGTTTAATGTATTNGTATATACAGATGCTCTGATGCCTTACCTAATGGTATGAAGTTTGGTAGCACGTAAAAAA ] [-] EMBL CF300808 [ AAGCTCTAGGGTTCTTGAAGAACAGAGCAAGGATGATGGCAGCTATGAATTTTCTGTGATTTTGCCGTTTACTCGGCCATTACCT CTGTATAGAACAGCATGATTTCAATGGCATCAAGATTGAAGGGGC AAAAAAAATAGAAGGACAAAATAGGCAGATGTTTATATGCCTTTCTTGTGTGTATTGATGTTTCTGTCTTGTGGCTTTGTGAGTGAGGTTGAAATGTCACCTTTGGTTGATGTGAATGCGAGTGAGGTTGAGTTTAATGTATTTGTATATACAGATGCTCTGATGCCTTACCTAATGGTATGAAGTTTGGTAGCACGTAAAAAAtat] consensusID : consensus_13909#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 630 fasta sequence [GCAAACCTGATGGTTACTTCCTCTCTAACTACCCATCCTTTTATTTCTTTTCTTTTGCATAGCTTGCTCCATTCCTCCTTTCACCTCCTCTCTATGAGGCCATAGCCGGAGGTCTCAGCAGGGCTTCCTCATGGGGTGGCTCCACTCCCTCTTCTCCCCTCTGAGGAAGCTCTGGGTTCGTGCGCATTCCGCACGTCGAAACCGGAGGGGAATGCACATTCTGTACAAGGATGTCAAGTCTTGCCAGGATGAGGATGTGCATGTTCTATGGTCCATATTGGTGGATTCGCACCGTCACCCAGCTCTGATGAAGCTGAAGCTCTAGGGTTCTTGAAGAACAGAGCAGGGATGATGGCAGCTATGAATTTTCTGTGATTTTGCCGTTTACTCGGCCATTACCTCTGTATAGAACAGCATGATTTCAATGGCATCAAGATTGAAGGGGCAAAAAAAATAGAAGGACAAAATAGGCAGATGTTTATATGCCTTTCTTGTGTGTATTGATGTTTCTGTCTTGTGGCTTTGTGAGTGAGGTTGAAATGTCACCTTTGGTTGATGTGAATGCGAGTGAGGTTGAGTTTAATGTATTTGTATATACAGATGCTCTGATGCCTTACCTAATGGTATGAA] [+] EMBL AK061623 [GCAAACCTGATGGTTACTTCCTCTCTAACTACCCATCCTTTTATTTCTTTTCTTTTGCATAGCTTGCTCCATTCCTCCTTTCACCTCCTCTCTATGAGGCCATAGCCGGAGGTCTCAGCAGGGCTTCCTCATGGGGTGGCTCCACTCCCTCTTCTCCCCTCTGAGGAAGCTCTGGGTTCGTGCGCATTCCGCACGTCGAAACCGGAGGGGAATGCACATTCTGTACAAGGATGTCAAGTCTTGCCAGGATGAGGATGTGCATGTTCTATGGTCCATATTGGTGGATTCGCACCGTCACCCAGCTCTGATGAAGCTGAAGCTCTAGGGTTCTTGAAGAACAGAGCAGGGATGATGGCAGCTATGAATTTTCTGTGATTTTGCCGTTTACTCGGCCATTACCTCTGTATAGAACAGCATGATTTCAATGGCATCAAGATTGAAGGGGCAAAAAAAATAGAAGGACAAAATAGGCAGATGTTTATATGCCTTTCTTGTGTGTATTGATGTTTCTGTCTTGTGGCTTTGTGAGTGAGGTTGAAATGTCACCTTTGGTTGATGTGAATGCGAGTGA ] [+] EMBL AK120337 [ CATTCCTCCTTTCACCTCCTCTCTATGAGGCCATAGCCGGAGGTCTCAGCAGGGCTTCCTCATGGGGTGGCTCCACTCCCTCTTCTCCCCTCTGAGGAAGCTCTGGGTTCGTGCGCATTCCGCACGTCGAAACCGGAGGGGAATGCACATTCTGTACAAGGATGTCAAGTCTTGCCAGGATGAGGATGTGCATGTTCTATGGTCCATATTGGTGGATTCGCACCGTCACCCAGCTCTGATGAAGCTGAAGCTCTAGGGTTCTTGAAGAACAGAGCAAGGATGATGGCAGCTATGAATTTTCTGTGATTTTGCCGTTTACTCGGCCATTACCTCTGTATAGAACAGCATGATTTCAATGGCATCAAGATTGAAGGGGCAAAAAAAATAGAAGGACAAAATAGGCAGATGTTTATATGCCTTTCTTGTGTGTATTGATGTTTCTGTCTTGTGGCTTTGTGAGTGAGGTTGAAATGTCACCTTTGGTTGATGTGAATGCGAGTGAGGTTGAGTTTAATGTATTTGTATATACAGATGCTCTGATGCCTTACCTAATGGTATGAA] consensusID : consensus_13909#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 527 fasta sequence [CATGGA-TGAAGGAGTAGAAAATTTCTCCTTTCACCTCCTCTCTATGAGGCCATAGCCGG-AGGTCTCAGCAGGGCTTCCTCATGGGGTGGCTCCACTCCCTCTTCTCCCCTCTGAGGAAGCTCTGGGTTCGTGCGCATTCCGCACGTCGAAACCGGAGGGG-AATGCACATTCTGTACAAGGATGTCAAGTCTTGCCAGGATGAGGATGTGCATGTTCTATGGTCCATATTGGTGGATTCGCACCGTCACCCAGCTCTGATGAAGCTGAAGCTCTAGGGTTCTTGAAGAACAGAGCAAGGATGATGGCAGCTATGAATTTTCTGTGATTTTGCCGTTTACTCGGCCATTACCTCTGTATAGAACAGCATGATTTCAATGGCATCAAGATTGAAGGGGC-AAAAAAAATAGAAGGACAAAATAGGCAGATGTTTAT-ATGCCTTTCTTGTGTGTATTGATGTTTCTGTCTTGTGGCTTTGTGAGTGAGGTTGAAATATCACCTTTGGTTGATGTGNAAAAAAAAAAAAAAAA] [+] EMBL CF305268 [CATGGA TGAAGGAGTAGAAAATTTCTCCTTTCACCTCCTCTCTATGAGGCCATAGCCGG AGGTCTCAGCAGGGCTTCCTCATGGGGTGGCTCCACTCCCCCTTCTCCCCTCTGAGGAAGCTCTGGGTTCGTGCGCATTCCGCACGTCGAAACCGGAGGGG AATGCACATTCTGTACAAGGATGTCAAGTCTTGCCAGGATGAGGATGTGCATGTTCTATGGTCCATATTGGTGGATTCGCACCGTCACCCAGCTCTGATGAAGCTGAAGCTCTAGGGTTCTTGAAGAACAGAGCAAGGATGATGGCAGCTATGAATTTTCTGTGATTTTGCCGTTTACTCGGCCATTACCTCTGTATAGAACAGCATGATTTCAATGGCATCAAGATTGAAGGGGC AAAAAAAATAGAAGGACAAAATAGGCAGATGTTTAT ATGCCTTTCTTGTGTGTATTGATGTTTCTGTCTTGTGGCTTTGTGAGTGAGGTTGAAATATCACCTTTGGTTGATGTG ] [+] EMBL CF300390 [ cTGGACTGAAGGAGTAGAAAATTCCTTTTTTCACCTCCTCTCTATGAGGCCATACCCGG AGGTCTCAGCAGGGCTTCCTCATGGGGTGGCTCCACTCCCTCTTCTCCCCTCTGAGGAAGCTCTGGGTTCGTGCGCATTCCGCACGTCGAAACCGGAGGGG AATGCACATTCTGTACAAGGATGTCAAGTCTTGCCAGGATGAGGATGTGCATGTTCTATGGTCCATATTGGTGGATTCGCACCGTCACCCAGCTCTGATGAAGCTGAAGCTCTAGGGTTCTTGAAGAACAGAGCAAGGATGATGGCAGCTATGAATTTTCTGTGATTTTGCCGTTTACTCGGCCATTACCTCTGTATAGAACAGCATGATTTCAATGGCATCAAGATTGAAGGGGC AAAAAAAATAGAAGGACAAAATAGGCAGATGTTTAT A ] [+] EMBL CF301104 [ ACCTCCTCTCTATGAGGCCATAGCCGG AGGTCTCAGCAGGGCTTCCTCATGGGGTGGCTCCACTCCCTCTTCTCCCCTCTGAGGAAGCTCTGGGTTCGTGCGCATTCCGCACGTCGAAACCGGAGGGG AATGCACATTCTGTACAAGGATGTCAAGTCTTGCCAGGATGAGGATGTGCATGTTCTATGGTCCATATTGGTGGATTCGCACCGTCACCCAGCTCTGATGAAGCTGAAGCTCTAGGGTTCTTGAAGAACAGAGC ] [+] EMBL OSS13458A [ TATGAGGCCATAGCCGG AGGTCTCAGCAGGGCTTCCTCATGGGGTGGCTCCACTCCCTCTTCTCCCCTCTGAGGAAGCTCTGGGTTCGTGCGCATTCCGCACGTCGAAACCGGAGGGGNAATGCACATTCTGTACAAGGATGTCAAGTCTTGCCAGGATGAGGATGTGCATGTTCTATGGTCCATATTGGTGGATTCGCACCGTCACCCAGCTCTGATGAAGCTGAAGCTCTAGGGTTCTTGAAGAACAGAGCAAGGATGATGGCAGCTATGAATTTTCTGTGATTTTGCCGTTTACTCGGCCATTACCTCTGTATAGAACAGCATGATTTCAATGGCATCAAGATTGAAGGGGC AAAAAAAATAGAAGGACAAAATAGGCAGATGNTTAT ATGCCTTTNTTGTGTGTATTGATGTTTCTGNCTTGTGGCT ] [+] EMBL AU065986 [ AGGCCATAGCCGGNAGGTCTCAGCAGGGCTTCCTCATGGGGTGGCTCCACTCCCTCTTCTCCCCTCTGAGGAAGCTCTGGGTTCGTGCGCATTCCGCACGTCGAAACCGGAGGGG AATGCACATTCTGTACAAGGATGTCAAGTCTTGCCAGGATGAGGATGTGCATGTTCTATGGTCCATATTGGTGGATTCGCACCGTCACCCAGCTCTGATGAAGCTGAAGCTCTAGGGTTCTTGAAGAACAGAGCAAGGATGATGGCAGCTATGAATTTTCTGTGATTTTGCCGTTTACTCGGCCATTACCTCTGTATAGAACAGCATGATTTCAATGGCATCAAGATTGAAGGGGC AAAAAAAATAGAAGGNCAAAATAGGCAGATGTTTATAATGCCTTTNTTGTGTGTATTGATGTTTCTGCCTTGTGGCTTTGTGAGTAAGGTTGAAATGTCACCTTTGGTTGATGGTNAAAAAAAAAAAAAAAA] [+] EMBL AU055994 [ GCCATAGCCGGNAGGTCTCAGCAGGGCTTCCTCATGGGGTGGCTCCACNCCCTCTTCTCCCCTCTGAGGAAGCTCTGGGTTCGTGCGCATNCCGCACGTCGAAACCGGAGGGG AATGCACATTCTGTACAAGGATGTCAAGTCTTGCCAGGATGAGGATGTGCATGTTCTATGGTCCATATTGGTGGATTCGCACCGTCACCCAGCTCTGATGAAGCTGAAGCTCTAGGGTTCTTGAAGAACAGAGCAAGGATGATGGCAGCTATGAATTTTCTGTGATTTTGCCGTTTACTCGGCCATTACCTCTGTATAGAACAGCATGATTTCAATGGCATCAAGATTGAAGGGGCAAAAAAAAATAGAAGGACAAAATAGGCAGATGTTTAT ATGCCTTTCTTGTGTGTATTGATGTTTCTGTCTTGTGGCTTTGTGAGTGAGGTTGAA ] [+] EMBL AU055735 [ GCCATAGCCGG AGGTCTCAGCAGGGCTTCCTCATGGGGTGGCTCCACTCCCTCTTCTCCCCTCTGAGGAAGCTCTGGGTTCGTGCGCATTCCGCACGTCGAAACCGGAGGGG AATGCACATTCTGTACAAGGATGTCAAGTCTTGCCAGGATGAGGATGTGCATGTTCTATGGTCCATATTGGTGGATTCGCACCGTCACCCAGCTCTGATGAAGCTGAAGCTCTAGGGTTCTTGAAGAACAGAGCAAGGATGATGGCAGCTATGAATTTTCTGTGATTTTGCCGTTTACTCGGCCATTACCTCTGTATAGAACAGCATGATTT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13909#1 --------------------------------------GCAAACCTGATGGTTACTTCCT 22 consensus_13909#2 ------------------------------------------------------------ consensus_13909#0 CGATTAAAGTTGGGTAACGCCCAGGTTTTCCCNAGTCACCGACCNTTGTAAAACGACGCC 60 consensus_13909#1 CTCTAACTACCCATCCTTTTATTTCTTTTCTTTTGCATA--GCTTGCTCCATTCCTCCTT 80 consensus_13909#2 ----------------------------CATGGATGAAG--GAGTAGAAAATTTCTCCTT 30 consensus_13909#0 CATTNACCNCCCGTAATNCGACTCACTATTAGGCCGAAATTGGTTACCGGCCCCCCCCTC 120 * * * * *** consensus_13909#1 T------------CACCTCCTCTCTATGAGGCCATAGCC-GGAGGTCTC-AGCAGGGCTT 126 consensus_13909#2 T------------CACCTCCTCTCTATGAGGCCATAGCC-GGAGGTCTC-AGCAGGGCTT 76 consensus_13909#0 CGAGGTCGACCCACGCGTCCGCTCTATGAGCCCATAGCCCGGAGGTCTCCAGCAGGGCTT 180 * * *** ********* ******** ********* ********** consensus_13909#1 CCTC-ATGGGGTGGCTCCACTCCCTCTTCTCCCCTCTGAGGAAGCTCTGGGTTCGTGCGC 185 consensus_13909#2 CCTC-ATGGGGTGGCTCCACTCCCTCTTCTCCCCTCTGAGGAAGCTCTGGGTTCGTGCGC 135 consensus_13909#0 CCTCCATGGGGTGGCTCCACTCCCTCTTCTCCCCTCTGAGGAAGCTCTGGGTTC-TGCGC 239 **** ************************************************* ***** consensus_13909#1 ATTCCGCACGTCGAAACCGGAGGGGAATGCACATTCTGTACAAGGATGTCAAGTCTTGCC 245 consensus_13909#2 ATTCCGCACGTCGAAACCGGAGGGGAATGCACATTCTGTACAAGGATGTCAAGTCTTGCC 195 consensus_13909#0 ATTCCGCACNTCGAAACCGGAGGGGAATGCACATTCTGTACAAGGATGTCAAGTCTTGCC 299 ********* ************************************************** consensus_13909#1 AGGATGAGGATGTGCATGTTCTATGGTCCATATTGGTGGATTCGCACCGTCACCCAGCTC 305 consensus_13909#2 AGGATGAGGATGTGCATGTTCTATGGTCCATATTGGTGGATTCGCACCGTCACCCAGCTC 255 consensus_13909#0 AGGATGAGGATGTGCATGTTCTATGGTCCATATTGGTGGATTCGCACCGTCACCCAGCTC 359 ************************************************************ consensus_13909#1 TGATGAAGCTGAAGCTCTAGGGTTCTTGAAGAACAGAGCAGGGATGATGGCAGCTATGAA 365 consensus_13909#2 TGATGAAGCTGAAGCTCTAGGGTTCTTGAAGAACAGAGCAAGGATGATGGCAGCTATGAA 315 consensus_13909#0 TGATGAAGCTGAAGCTCTAGGGTTCTTGAAGAACAGAGCAAGGATGATGGCAGCTATGAA 419 **************************************** ******************* consensus_13909#1 TTTTCTGTGATTTTGCCGTTTACTCGGCCATTACCTCTGTATAGAACAGCATGATTTCAA 425 consensus_13909#2 TTTTCTGTGATTTTGCCGTTTACTCGGCCATTACCTCTGTATAGAACAGCATGATTTCAA 375 consensus_13909#0 TTTTCTGTGATTTTGCCGTTTACTCGGCCATTACCTCTGTATAGAACAGCATGATTTCAA 479 ************************************************************ consensus_13909#1 TGGCATCAAGATTGAAGGGGCAAAAAAAATAGAAGGACAAAATAGGCAGATGTTTATATG 485 consensus_13909#2 TGGCATCAAGATTGAAGGGGCAAAAAAAATAGAAGGACAAAATAGGCAGATGTTTATATG 435 consensus_13909#0 TGGCATCAAGATTGAAGGGGCAAAAAAAATAGAAGGACAAAATAGGCAGATGTTTATATG 539 ************************************************************ consensus_13909#1 CCTTTCTTGTGTGTATTGATGTTTCTGTCTTGTGGCTTTGTGAGTGAGGTTGAAATGTCA 545 consensus_13909#2 CCTTTCTTGTGTGTATTGATGTTTCTGTCTTGTGGCTTTGTGAGTGAGGTTGAAATATCA 495 consensus_13909#0 CCTTTCTTGTGTGTATTGATGTTTCTGTCTTGTGGCTTTGTGAGTGAGGTTGAAATGTCA 599 ******************************************************** *** consensus_13909#1 CCTTTGGTTGATGTGAATGCGAGTGAGGTTGAGTTTAATGTATTTGTATATACAGATGCT 605 consensus_13909#2 CCTTTGGTTGATGTGNAAAAAAAAAAAAAAAA---------------------------- 527 consensus_13909#0 CCTTTGGTTGATGTGAATGCGAGTGAGGTTGAGTTTAATGTATTTGTATATACAGATGCT 659 *************** * * * * consensus_13909#1 CTGATGCCTTACCTAATGGTATGAA----------------------- 630 consensus_13909#2 ------------------------------------------------ consensus_13909#0 CTGATGCCTTACCTAATGGTATGAAGTTTGGTAGCAAAAAAAAAAAAA 707 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||