These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1391#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 606 fasta sequence [CCGAACAGCTCACGCTTCTCCCGAAGCAAAGCCACAGCGGCCCAAACCCTAAACCCCCTCGAAGCTCCATCCAATGGCGGGGTGGCCGGCGGCGGAGGCCGCGGGGGCGCTGGTGGTGGCGATCCTCGCGGCGGCGGCGGGCGGCGCGGCGGGGAAGACGACGATCGAGCCGTGCGCGGGGGCGGACACGTGCGCCGCGCTGCTCGGGTACACGCTGTACGCGGACATGAAGGTGTCGGAGGTGGCGGCGCTGTTCGGCGCCGACCCGAGGGCCGTGCTCGCCGCGAACGCGCTCGACTTCGCCTCCCCCGGTGCCGCCAACCGCATCCTCCCCGCGGGGCTCCCGCTCCGCGTCCCCACCCGGTGCGCCTGCTCCGACGGAGTCCGCAAGTCCGTCGACGTGCGCTACTCCGCGCGGCCCGACGACACGGTGGAGTCCGGCAGCGACGGCGACTTCGACGGAGTCGTCTCCGGCGACCAGACCGAGACGCGTACGGTGTCTCCGGCGAGGACCGCGACGGGCCGGTCGAAAGCCAAGGCACTGTCGAGGAACCGAATCCCCTGGGCCTGCATCAGCTCCACAGAGAATAGCCCTCCCGGCCGGAA] [+] EMBL CA753959 [CCGAACAGCTCACGCTTCTCCCGAAGCAAAGCCACAGCGGCCCAAACCCTAAACCCCCTCGAAGCTCCATCCAATGGCGGGGTGGCCGGCGGCGGAGGCCGCGGGGGCGCTGGTGGTGGCGATCCTCGCGGCGGCGGCGGGCGGCGCGGCGGGGAAGACGACGATCGAGCCGTGCGCGGGGGCGGACACGTGCGCCGCGCTGCTCGGGTACACGCTGTACGCGGACATGAAGGTGTCGGAGGTGGCGGCGCTGTTCGGCGCCGACCCGAGGGCCGTGCTCGCCGCGAACGCGCTCGACTTCGCCTCCCCCGGTGCCGCCAACCGCATCCTCCCCGCGGGGCTCCCGCTCCGCGTCCCCACCCGGTGCGCCTGCTCCGACGGAGTCCGCAAGTCCGTCGACGTGCGCTACTCCGCGCGGCCCGACGACACGGTGGAGTCCGGCAGCGACGGCGACTTCGACGGAGTCGTCTCCGGCGACCAGACCGAGACGCGTACGGTGTCTCCGGCGAGGACCGCGACGGGCCGGTCGAAAGCCAAGGCACTGTCGAGGAACCGAATCCCCTGGGCCTGCATCAGCTCCACAGAGAATAGCCCTCCCGGCCGGAA] consensusID : consensus_1391#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 360 fasta sequence [CCTCGCGGCGGCGGCGGGCGGCGCGGCGGGGAAGACGACGATCGAGCCGTGCGCGGGGGCGGACACGTGCGCCGCGCTGCTCGGGTACACGCTGTACGCGGACATGAAGGTGTCGGAGGTGGCGGCGCTGTTCGGCGCCGACCCGAGGGCCGTGCTCGCCGCGAACGCGCTCGACTTCGCCTCCCCCGGCGCCGCCAACCGCATCCTCCCCGCGGGGCTCCCGCTCCGCGTCCCCACCCGGTGCGCCTGCTCCGACGGCGTCCGCAAGTCCGTCGCCGTGCGCTTACTTNCGCGCGCCCCGCCGACANGNTGGCGTCCGTTCGCCGACGTTCGTCTTCCGCCGAGGGACCCCGAAGGCGC] [+] EMBL OSC424 [CCTCGCGGCGGCGGCGGGCGGCGCGGCGGGGAAGACGACGATCGAGCCGTGCGCGGGGGCGGACACGTGCGCCGCGCTGCTCGGGTACACGCTGTACGCGGACATGAAGGTGTCGGAGGTGGCGGCGCTGTTCGGCGCCGACCCGAGGGCCGTGCTCGCCGCGAACGCGCTCGACTTCGCCTCCCCCGGCGCCGCCAACCGCATCCTCCCCGCGGGGCTCCCGCTCCGCGTCCCCACCCGGTGCGCCTGCTCCGACGGCGTCCGCAAGTCCGTCGCCGTGCGCTTACTTNCGCGCGCCCCGCCGACANGNTGGCGTCCGTTCGCCGACGTTCGTCTTCCGCCGAGGGACCCCGAAGGCGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1391#0 CCGAACAGCTCACGCTTCTCCCGAAGCAAAGCCACAGCGGCCCAAACCCTAAACCCCCTC 60 consensus_1391#1 ------------------------------------------------------------ consensus_1391#0 GAAGCTCCATCCAATGGCGGGGTGGCCGGCGGCGGAGGCCGCGGGGGCGCTGGTGGTGGC 120 consensus_1391#1 ------------------------------------------------------------ consensus_1391#0 GATCCTCGCGGCGGCGGCGGGCGGCGCGGCGGGGAAGACGACGATCGAGCCGTGCGCGGG 180 consensus_1391#1 ---CCTCGCGGCGGCGGCGGGCGGCGCGGCGGGGAAGACGACGATCGAGCCGTGCGCGGG 57 ********************************************************* consensus_1391#0 GGCGGACACGTGCGCCGCGCTGCTCGGGTACACGCTGTACGCGGACATGAAGGTGTCGGA 240 consensus_1391#1 GGCGGACACGTGCGCCGCGCTGCTCGGGTACACGCTGTACGCGGACATGAAGGTGTCGGA 117 ************************************************************ consensus_1391#0 GGTGGCGGCGCTGTTCGGCGCCGACCCGAGGGCCGTGCTCGCCGCGAACGCGCTCGACTT 300 consensus_1391#1 GGTGGCGGCGCTGTTCGGCGCCGACCCGAGGGCCGTGCTCGCCGCGAACGCGCTCGACTT 177 ************************************************************ consensus_1391#0 CGCCTCCCCCGGTGCCGCCAACCGCATCCTCCCCGCGGGGCTCCCGCTCCGCGTCCCCAC 360 consensus_1391#1 CGCCTCCCCCGGCGCCGCCAACCGCATCCTCCCCGCGGGGCTCCCGCTCCGCGTCCCCAC 237 ************ *********************************************** consensus_1391#0 CCGGTGCGCCTGCTCCGACGGAGTCCGCAAGTCCGTCGACGTGCGCTA--CTCCGCGCGG 418 consensus_1391#1 CCGGTGCGCCTGCTCCGACGGCGTCCGCAAGTCCGTCGCCGTGCGCTTACTTNCGCGCGC 297 ********************* **************** ******** * ****** consensus_1391#0 CCCGACGACACGGTGGAGTCCGGCAGC-GACGG-CGACTTCGACGGAGTCGTCTCCGGCG 476 consensus_1391#1 CCCGCCGACANGNTGGCGTCCGTTCGCCGACGTTCGTCTTCCGCCGAGG-GACCCCGAAG 356 **** ***** * *** ***** ** **** ** **** * *** * * *** * consensus_1391#0 ACCAGACCGAGACGCGTACGGTGTCTCCGGCGAGGACCGCGACGGGCCGGTCGAAAGCCA 536 consensus_1391#1 GCGC-------------------------------------------------------- 360 * consensus_1391#0 AGGCACTGTCGAGGAACCGAATCCCCTGGGCCTGCATCAGCTCCACAGAGAATAGCCCTC 596 consensus_1391#1 ------------------------------------------------------------ consensus_1391#0 CCGGCCGGAA 606 consensus_1391#1 ---------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||