These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13915#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1449 fasta sequence [AGTGAGCCACCACCAGAGGCGTGACCGAATCGGCTAGCGAGTGAGAGAGGAGGAGCAGTTCACAGTTGCAGTTCCACGCTCGCAGTAGTGTCCAGAGCAGAGCGCGAGGGAAGAGGGCGCAGAGAGCAGGAGGAG----AGGCAGCCATGGGCGAGGAGGAGAAGGTGAAGGAGGAGGCGGCGGCGGAGAAGGGGAAGGAGGCGGCGGTAGCGGAGGAGAAGGAGGCGGCGGCGGCAGGGGAGGAGAAGAAGGAGAACGCGCCGCCNCCNCCGCCACCGCCGGAGGAGGTGGTGATGCGGGTCTTCATGCACTGCGAAGGGTGCGCTCGCAAGGTCAAGAAGATACTCAGGGGATTTGATGGAGTGGAAGATGTTGTCGCGGACTCGAAAGCTCACAAGGTGATCGTGAAGGGAAAGAAGGCTGCTGCTGACCCAATGAAGGTGGTGCACCGTGTGCAGAAGAAGACAGGCCGCAAGGTTGAGCTTCTATCACCGATGCCACCTCCGGTGGAGGAGAAGAAGGAAGAGGAGAAAAAGGAAGAGCCCGAGCCACCAAAACCTGAAGAGAAGGAGCCAACGGTGATAGCGGTGGTCCTGAAGGTGCATATGCATTGTGAGGCCTGTGCGCAAGTTATCAGGAAGAAAATCCTCAAGATGAAAGGAGTGCAATCAGCAGAGCCAGACATGAAGGCATCACAAGTGACGGTGAAGGGTGTGTTTGAGGAGTCAAAGCTCACCGATTACGTGCATAAACGCATTGGTAAGAATGCCGCCGTTGTAAAATCTGAACCAGCCCCTCCCCCTGAGAATGCTGGCGATGCAAATGCAAAGGATGACAAGAAGGCGGCCGAAGGTGGCGAGGAGAAGGACGAGAGCAAGGAGGAAAAGAAGGAAGGTGATGATGAGAAAGAAAAGGAGAAAGAGAAGGATGATAGCAATGCTGCCGAGGTTGAAGAGAAGGACAAAGAGAAAGATCCTTCAGCCTTGGCTGCTGCTAATCTGTATATGCATTACCCAAGATTCAGCAACCCTGGTGGATATGGTGTTCCTGGCTACGCATACCCGTATGCGCCGCAGCTCTTCAGTGACGAGAATCCAAACGCCTGTGTTGTGATGTGAGAAGGTGAGAACAATGAGGTCCAAA-TTGGGGGAAATAAGAGTGAGACTAC-GCATCCCCTAACTTCTGGGGGGTGAAATCGGCTGTTCGAAGATAGGATCAAGCAAGCCATTTTGGTTTCTAACTGTTCTCATGTAATTAAAATGTGAACTGTTGGCCTCGTCTCTATTGTCGGCCTTCATGGACATTATATTATGTAAGCTAAAAATGTAGGATTTTGCTTTGAGCTTTCTCTCTATTGGCTTTCCTTTTGTAAAAATTGTATAATATATATATTGTTAGTGTTGAAATAGCTTGTGTATCCTTGTTATTGTCTCAGGAGGAGCACCCTCTAGT] [+] EMBL AK073949 [AGTGAGCCACCACCAGAGGCGTGACCGAATCGGCTAGCGAGTGAGAGAGGAGGAGCAGTTCACAGTTGCAGTTCCACGCTCGCAGTAGTGTCCAGAGCAGAGCGCGAGGGAAGAGGGCGCAGAGAGCAGGAGGAG AGGCAGCCATGGGCGAGGAGGAGAAGGTGAAGGAGGAGGCGGCGGCGGAGAAGGGGAAGGAGGCGGCGGTAGCGGAGGAGAAGGAGGCGGCGGCGGCAGGGGAGGAGAAGAAGGAGAACGCGCCGCCNCCNCCGCCACCGCCGGAGGAGGTGGTGATGCGGGTCTTCATGCACTGCGAAGGGTGCGCTCGCAAGGTCAAGAAGATACTCAGGGGATTTGATGGAGTGGAAGATGTTGTCGCGGACTCGAAAGCTCACAAGGTGATCGTGAAGGGAAAGAAGGCTGCTGCTGACCCAATGAAGGTGGTGCACCGTGTGCAGAAGAAGACAGGCCGCAAGGTTGAGCTTCTATCACCGATGCCACCTCCGGTGGAGGAGAAGAAGGAAGAGGAGAAAAAGGAAGAGCCCGAGCCACCAAAACCTGAAGAGAAGGAGCCAACGGTGATAGCGGTGGTCCTGAAGGTGCATATGCATTGTGAGGCCTGTGCGCAAGTTATCAGGAAGAAAATCCTCAAGATGAAAGGAGTGCAATCAGCAGAGCCAGACATGAAGGCATCACAAGTGACGGTGAAGGGTGTGTTTGAGGAGTCAAAGCTCACCGATTACGTGCATAAACGCATTGGTAAGAATGCCGCCGTTGTAAAATCTGAACCAGCCCCTCCCCCTGAGAATGCTGGCGATGCAAATGCAAAGGATGACAAGAAGGCGGCCGAAGGTGGCGAGGAGAAGGACGAGAGCAAGGAGGAAAAGAAGGAAGGTGATGATGAGAAAGAAAAGGAGAAAGAGAAGGATGATAGCAATGCTGCCGAGGTTGAAGAGAAGGACAAAGAGAAAGATCCTTCAGCCTTGGCTGCTGCTAATCTGTATATGCATTACCCAAGATTCAGCAACCCTGGTGGATATGGTGTTCCTGGCTACGCATACCCGTATGCGCCGCAGCTCTTCAGTGACGAGAATCCAAACGCCTGTGTTGTGATGTGAGAAGGTGAGAACAATGAGGTCCAAA TTGGGGGAAATAAGAGTGAGACTAC GCATCCCCTAACTTCTGGGGGGTGAAATCGGCTGTTCGAAGATAGGATCAAGCAAGCCATTTTGGTTTCTAACTGTTCTCATGTAATTAAAATGTGAACTGTTGGCCTCGTCTCTATTGTCGGCCTTCATGGACATTATATTATGTAAGCTAAAAATGTAGGATTTTGCTTTGAGCTTTCTCTCTATTGGCTTTCCTTTTGTAAAAATTGTATAATATATATATTGTTAGTGTTGAAATAGCTTGTGTATCCTTGTTATTGTCTCAGGAGGAGCACCCTCTAGT] [+] EMBL OSS15492A [ GTTCACAGTTGCAGTTCCACGCTCGCAGTAGTGTCCAGAGCAGAGCGCGAGGGAAGAGGGCGCAGAGAGCAGGAGGAGAGGCAGGCAGCCATGGGCGAGGAGGAGAAGGTGAAGGAGGAGGCGGCGGCGGAGAAGGGGAAGGAGGCGGCGGTAGCGGAGGAGAAGGAGGCGGCGNCGGCAGGGGAGGAGAAGAAGGAGGACGCGCCGTCGACGACGACACCGNCGGAGGAGGTGGTGATGCGGGTCTTCATGCACTGCGAAGGGTGCGCTCGCAAGGTCAAGAAGATACTCAGGGGATTTGATGGAGTGGAAGNTGTTGTCGCGGACTCGAAAGCTCACANTGTGATCGTGA ] [+] EMBL CB684953 [ CAAGGTGATCTTGAAGGGAAAGAAGGCTGCTGCTGACCCAATGAAGGTGGTGCACCGTGTGCAGAAGAAGACAGGCCGCAAGGTTGAGCTTCTATCACCGATGCCACCTCCGGTGGAGGAGAAGAAGGAAGAGGAGAAAAAGGAAGAGCCCGAGCCACCAAAACCTGAAGAGAAGGAGCCAACGGTGATAGCGGTGGTCCTGAAGGTGCATATGCATTGTGAGGCCTGTGCGCAAGTTATCAGGAAGAAAATCCTCAAGATGAAAGGAGTGCAATCAGCAGAGCCAGACATGAAGGCATCACAAGTGACGGTGAAGGGTGTGTTTGAGGAGTCAAAGCTCACCGATTACGTGCATAAACGCATTGGTAAGAATGCCGCCGTTGTAAAATCTGAACCAGCCCCTCCCCCTGAGAATGCTGGCGATGCAAATGCAAAGGATGACAAGAAGGCGGCCGAAGGTGGCGAGGAGAAGGACGAGAGCAAGGAGGAAAAGAAGGAAGGTGATGATGAGAAAGAAAAGGAGAAAGAGAAGGATGATAGCAATGCTGCCGAGGTTGAAGAGAATGACAAAGAGAAAGATCCTTCAGCCTTGGCTGCTGCTAATCTGTATATGCATTACCCAAGATTCAGCAACCCTGGTGGATATGGTGTTCCTGGCTACGCATACCCGTATGCGCCGCAGCTCTTCAGTGACGAGAATCCAAACGCCTGTGTTGTGATGTGAGAAng ] [+] EMBL AU166733 [ GCTTCTATCACCGATGCCACCTCCGGTGGAGGAGAAGAAGGAAGAGGAGAAAAAGGAAGAGCCCGAGCCACCAAAACCTGAAGAGAAGGAGCCAACGGTGATAGCGGTGGTCCTGAAGGTGCATATGCATTGTGAGGCCTGTGCGCAAGTTATCAGGAAGAAAATCCTCAAGATGAAAGGAGTGCAATCAGCAGAGCCAGACATGAAGGCATCACAAGTGACGGTGAAGGGTGTGTTTGAGGAGTCAAAGCTCACCGATTACGTGCATAAACGCATTGGTAAGAATGCCGCCGTTGTAAAATCTGAACCAGCCCCTCCCCCTGAGAATGCTGGCGATGCAAATGCAAAGGATGACAAGAAGGCGGCCGAAGGTGGCGAGGAGAAGGACGAGAGCAAGGAGGAAAAGAAGGAAGGTGATGATGAGAAAAAAAAaa ] [-] EMBL CB665317 [ CAACGGTGATAGCGGTGGTCCTGAAGGTGCATATGCATTGTGAGGCCTGTGCGCAAGTTATCAGGAAGAAAATCCTCAAGATGAAAGGAGTGCAATCAGCAGAGCCAGACATGAAGGCATCACAAGTGACGGTGAAGGGTGTGTTTGAGGAGTCAAAGCTCACCGATTACGTGCATAAACGCATTGGTAAGAATGCCGCCGTTGTAAAATCTGAACCAGCCCCTCCCCCTGAGAATGCTGGCGATGCAAATGCAAAGGATGACAAGAAGGCAGCCGAAGGTGGCGAGGAGAAGGACGAGAGCAAGGAGGAAAAGAAGGAAGGTGATGATGAGAAAGAAAAGGAGAAAGAGAAGGATGATAGCAATGCTGCCGAGGTTGAAGAGAAGGACAAAGAGAAAGATCCTTCAGCCTTGGCTGCTGCTAATCTGTATATGCATTACCCAAGATTCAGCAACCCTGGTGGATATGGTGTTCCTGGCTACGCATACCCGTATGCGCCGCAGCTCTTCAGTGACGAGAATCCAAACGCCTGTGTTGTGATGTGAGAAGGTGAGAACAATGAGGTCCAAA TTGGGGGAAATAAGAGTGAGACTAC GCATCCCCTAACTTCTGGGGGGTGAAATCGGCTGTTCGAAGATAGGATCAAGCAAGCCATTTTGGTTTCTAACTGTTCTCATGTAATTAAAATGTGAACTGTTGGCCTCGTCTCTATTGTCGGCCTTCATGGACATTATATTATGTAAGCTAAAAATGTAGGATTTTGCTTTGAGCTTTCTCTCTATTGGCTTTCCTTTTGTAAAAATTGTATAATATATATATTGTTAGTGTTGAAA ] [-] EMBL CB684954 [ AGCAGAGCCAGACATGAAGGCATCACAAGTGACGGTGAAGGGTGTGTTTGAGGAGTCAAAGCTCACCGATTACGTGCATAAACGCATTGGTAAGAATGCCGCCGTTGTAAAATCTGAACCAGCCCCTCCCCCTGAGAATGCTGGTGATGCAAATGCAAAGGATGACAAGAAGGCGGCCGAAGGTGGTGAGGAGAAGGACGAGAGCAAGGAGGAAAAGAAGGAAGGTGATGATGAGAAAGAAAAGGAGAAAGAGAAGGATGATAGCAATGCTGCCGAGGTCGAAGAGAAGGACAAAGAGAAAGATCCTTCAGCCTTGGCTGCTGCTAATCTGTATATGCATTACCCAAGATTCAGCAACCCTGGTGGATATGGTGTTCCTGGCTACGCATACCCGTATGCGCCGCAGCTCTTCAGTGACGAGAATCCAAACGCTTGTGTTGTGATGTGAGAAGGTGAGAACAATGAGGTCCCAA TTGGGGGAAATAAGAGTGAGACTAC GCATCCCCTACCTTCTGGGGGGTGAAATCGGCTGTTGGAAGATAGGATCAAGCAAGCCATTTTGGTTTTTAACTGTTTTCATGTAATTAAAATGTGCACTGTTGGCCTGGTCTATATTGTCGGCCTTCATGGCCATTATATTATGTAAGCTAAAAATGTAGGATTTTGCTTTGAGCTTTCTCTCTAAGCGCTTTCCTCTT TAAGAGGCGCATAATATATATAT ] [-] EMBL CB665316 [ AGCCAGACATGAAGGCATCACAAGTGACGGTGAAGGGTGTGTTTGAGGAGTCAAAGCTCACCGATTACGTGCATAAACGCATTGGTAAGAATGCCGCCGTTGTAAAATCTGAACCAGCCCCTCCCCCTGAGAATGCTGGCGATGCAAATGCAAAGGATGACAAGAAGGCAGCCGAAGGTGGCGAGGAGAAGGACGAGAGCAAGGAGGAAAAGAAGGAAGGTGATGATGAGAAAGAAAAGGAGAAAGAGAAGGATGATAGCAATGCTGCCGAGGTTGAAGAGAAGGACAAAGAGAAAGATCCTTCAGCCTTGGCTGCTGCTAATCTGTATATGCATTACCCAAGATTCAGCAACCCTGGTGGATATGGTGTTCCTGGCTACGCATACCCGTATGCGCCGCAGCTCTTCAGTGACGAGAATCCAAACGCCTGTGTTGTGATGTGAGAAGGTGAGAACAATGAGGTCCAAA TTGGGGGAAATAAGAGNGAGACTAC GC ] [+] EMBL C28754 [ ATGACAAGAAGGCGGCCGAA GTGGCGAGGAGAAGGACGAGAGCAAGGAGGAAAAGAAGGAAGGTGATGATGAGAAAGAAAAGGAGAAAGAGAAGGATGATAGCAATGCTGCCGAGGTTGAAGAGAAGGACAAAGAGAAAGATCCTTCAGCCTTGGCTGCTGCTAATCTGTATATGCATTACCCAAGATTCAGCAACCCTGGTGGATATGGTGTTCCTGGCTACGCATACCCGTATGCGCCGCAGCTCTTCAGTNACGAGAATCCAAACGCCTGTTTTGTGATGTNAGAAGGTGAGANCAATGAGGTCCAAATTTGGGGGAAATAAGAGTTAG CTACNGCATCCCCTNACTTCTTGGGGGTGAAATCGGC ] [+] EMBL AU093075 [ anGAGAAGGACAAAGAGAAAGNTCCTTCAGCCTTGGCTGCTGCTAATCTGTATATGCATTACCCAAGATTCAGCAACCCTGGTGGATATGGTGTTCCT GNTACGCATACCCGTATGCGCCGCAGCTCTTCAGTGACGAGAATCCAAACGCCTGTGTTGTGATGTGAGAAGGTGAGAACAATGAGGTCCAAA TTGGGGGAAATAAGAGTGAGACTAC GCATCCCCTNACTTCTGGGGGGTGAAATCGGCTGTTCGAAGATAGGATCAAGCAAGCCATTNTGGTTTCTAACTGTTCTNATGTAATTAAAATGTGAACTGTTGGCCTCGTCTCTATTGTCGGCCTTCATGGACATTATATTATGTAAGCTAAAAATGTNGGATTTTGCTTTGAGCTTTCNCTCTATTGGCTTTCCTTTTGTAAAAATTGTATAATATATATATTGTTAGTGTTGAAAaaaa ] consensusID : consensus_13915#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1069 fasta sequence [CGGCGAGGGAAGAGGGCGCAGAGAGCAGGAGGAGAGGCAGGCAGCCATGGGCGAGGAGGAGAAGGCTGCTGCTGACCCAATGAAGGTGGTGCACCGTGTGCAGAAGAAGACAGGCCGCAAGGTTGAGCTTCTATCACCGATNGCA-CTCCGGTGGAGGAGAAGAAGGAAGAGGAGAAAAAGGAAGAGCCCGAGCCACCAAAACCTGAAGAGAAGGAGCCAACGGTGATAGCGGTGGTCCTGAAGGTGCATATGCATTGTGAGGCCTGTGCGCAAGTTATCAGGAAGAAAATCCTCAAGATGAAAGGAGTGCAATCAGCAGAGCCAGACATGAAGGCATCACAAGTGACGGTGAAGGGTGTGTTTGAGGAGTCAAAGCTCACCGATTACGTGCATAAACGCATTGGTAAGAATGCCGCCGTTGTAAAATCTGAACCAGCCCCTCCCCCTGAGAATGCTGGCGATGCAAATGCAAAGGATGACAAGAAGGCGGCCGAAGGTGGCGAGGAGAAGGACGAGAGCAAGGAGGAAAAGAAGGAAGGTGATGATGAGAGGGGTGATGAGAAAGAAAAGGAGAAAGAGAAGGGTGATAGCAATGCTGCCGAGGTTGAAGAGGACAAAGAGAAAGATCCTTCAGCCTTGGCTGCTGCTAATCTGTATATGCATTACCAAAGATTCAGCAACCCTGGTGGATATGGTGTTCCCGGCTACGCATACCCGTATGCGCCACAGCTTTTTAGCGACGAGAATCCGAACGCCTGTGTTGTGATGTGAGAAGGTGAGAACAATGAGATCCAAATTGGGGAAAATAAGAGTGAGACTACGCATCCCCTAACTTTTGGGGGGTGAAATTGGCTGTTCGAATATAGGATCAAGCAAGCCATTTTGGTTTCTAACTGTTCTCATGTAATTAAAATGTGAACTGTTGGCCTCGTCTCTATTGTTGGCCTTCATGGACATTATTTTATGTAAGCTAAAAATGTAGGATTTTGCTTTGTACTTTCTCTCTATTGGCTTTCCTTTTGTAAAAATTGTATAATATATATTGTTAGTGTTGAAAAAAAAAAAAAAA] [+] EMBL C98142 [ GCGAGGGAAGAGGGCGCAGAGAGCAGGAGGAGAGGCAGGCAGCCATGGGCGAGGAGGAGAAGGCTGCTGCTGACCCAATGAAGGTGGTGCACCGTGTGCAGAAGAAGACAGGCCGCAAGGTTGAGCTTCTATCACCGATNGCA CTCCGGTGGAGGAGAAGAAGGAAGAGGAGAAAAAGGAAGAGCCCGAGCCACCAAAACCTGAAGAGAAGGAGCCAACGGTGATAGCGGTGGTCCTGAAGGTGCATATGCATTGTGAGGCCTGTGCGCAAGTTATCAGGAAGAAAATCCTCAAGATGAAAGGAGTGCAATCAGCAGAGCCAGACATGAAGGCATCACAAGTGACGGTGAAGGGTGTGTTTGAGGAGTCAAAGCTCACCGATTACGTGCATAAACGCATTGGTAAGAATGCCGCCGTTGTAAAATCTGAACCAGCCCCTCCCCCTGAGAATGCTGGCGATGCAAATGCAAAGGATGACAAGAAGGCGGCCGAAGGTGGCGAGGAGAAGGACGAGAGCAAGGAGGAAAAGAAGGAAGGTGATGATGAGA ] [+] EMBL C98143 [cgcgGAGGGAAGAGGGCGCAGAGAGCAGGAGGAGAGGCAGGCAGCCATGGGCGAGGAGGAGAAGGCTGCTGCTGACCCAATGAAGGTGGTGCACCGTGTGCAGAAGAAGACAGGCCGCAAGGTTGAGCTTCTATCACCGATGCCACCTCCGGTGGAGGAGAAGAAGGAAGAGGAGAAAAAGGAAGAGCCCGAGCCACCAAAACCTGAAGAGAAGGAGCCAACGGTGATAGCGGTGGTCCTGAAGGTGCATATGCATTGTGAGGCCTGTGCGCAAGTTATCAGGAAGAAAATCCTCAAGATGAAAGGAGTGCAATCAGCAGAGCCAGACATGAAGGCATCACAAGTGACGGTGAAGGGTGTGTTTGAGGAGTCAAAGCTCACCGATTACGTGCATAAACGCATTGGTAAGAATGCCGNCGTTGTAAAATCTGAACCAGCCCCTCCCCCTGAGAATGCTGGCGATGCAAATGCAAAGGNTTACAAGAA ] [-] EMBL CA761232 [ GGTAAGAANGCCGCCGTCGTAAAATCTGAACCAGCCCCTCCCCCTGAGAATGCTGGCGATGCAAATGCAAAGGATGACAAGAAGGCGGCCGAAGGTGGCGAGGAGAAGGNCGAGAGCAAGGAGGAAAAGAAGGAAGGTGATGATGCTGGGGGTGATGAGAAAGAAAAGGAGAAAGAGAAGGGTGATAGCAATGCTGCCGAGGTTGAAGAGGACAAAGAGAAAGATCCTTCAGCCTTGGCTGCTGCTAATCTGTATATGCATTACCAAAGATTCAGCAACCCTGGTGGATATGGTGTTCCCGGCTACGCATACCCGTATGCGCCACAGCTTTTTAGCGACGAGAATCCGAACGCCTGTGTTGTGATGTGAGAAGGTGAGAACAATGAGATCCAAATTGGGGAAAATAAGAGTGAGACTACGCATCCCCTAACTTTTGGGGGGTGAAATTGGCTGTTCGAATATAGGATCAAGCAAGCCATTTTGGTTTCTAACTGTTCTCATGTAATTAAAATGTGAACTGTTGGCCTCGTCTCTATTGTTGGCCTTCATGGACATTATTTTATGTAAGCTAAAAATGTAGGATTTTGCTTTGTACTTTCTCTCTATTGGCTTTCCTTTTGTAAAAATTGTATAATATATATTGTTAGTGTTGAAAAAAAAAAAAAAA] consensusID : consensus_13915#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 583 fasta sequence [AGCGCGAGGGAAGAGGGCGCAGAGAGCAGGAGGAGAGGCAGGCAGCCATGGGCGAGGAGAAGAAGGAAGAGGAAAAGAAGGAAGGTGATGATGAGAAAGAAAAGGAGAAAGAGAAGGATGATAGCAATGCTGCCGAGGTTGAAGAGAAGGACAAAGAGAAAGATCCTTCAGCCTTGGCTGCTGCTAATCTGTATATGCATTACCCAAGATTCAGCAACCCTGGTGGATATGGTGTTCCTGGCTACGCATACCCGTATGCGCCGCAGCTCTTCAGTGACGAGAATCCAAACGCCTGTGTTGTGATGTGAGAAGGTGAGAACAATGAGGTCCAAATTGGGGGAAATAAGAGTGAGACTACGCATCCCCTAACTTCTGGGGGGTGAAATCGGCTGTTCGAAGATAGGATCAAGCAAGCCATTTTGGTTTCTAACTGTTCTCATGTAATTAAAATGTGAACTGTTGGCCTCGTCTCTATTGTCGGCCTTCATGGACATTATATTATGTAAGCTAAAAATGTAGGATTTTGCTTTGAGCTTTCTCTCTATTGGCTTTCCTTTTGTAAAAATTGTATAATATATATATT] [+] EMBL AK120359 [AGCGCGAGGGAAGAGGGCGCAGAGAGCAGGAGGAGAGGCAGGCAGCCATGGGCGAGGAGAAGAAGGAAGAGGAAAAGAAGGAAGGTGATGATGAGAAAGAAAAGGAGAAAGAGAAGGATGATAGCAATGCTGCCGAGGTTGAAGAGAAGGACAAAGAGAAAGATCCTTCAGCCTTGGCTGCTGCTAATCTGTATATGCATTACCCAAGATTCAGCAACCCTGGTGGATATGGTGTTCCTGGCTACGCATACCCGTATGCGCCGCAGCTCTTCAGTGACGAGAATCCAAACGCCTGTGTTGTGATGTGAGAAGGTGAGAACAATGAGGTCCAAATTGGGGGAAATAAGAGTGAGACTACGCATCCCCTAACTTCTGGGGGGTGAAATCGGCTGTTCGAAGATAGGATCAAGCAAGCCATTTTGGTTTCTAACTGTTCTCATGTAATTAAAATGTGAACTGTTGGCCTCGTCTCTATTGTCGGCCTTCATGGACATTATATTATGTAAGCTAAAAATGTAGGATTTTGCTTTGAGCTTTCTCTCTATTGGCTTTCCTTTTGTAAAAATTGTATAATATATATATT] consensusID : consensus_13915#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 373 fasta sequence [AGCAGGAGGAGAGGCAGGCAGCCATGGGCGAGGAGGAGAAGGTGAAGGAGGAGGCGGCGGCGGAGAAGGGGAAGGAGGCGGCGGTANGGAGGAGAAGGATNNGGCGGCGGCAGGGGAGGAGAAGAAGGAGGACGCGCCGCCGCCGCCACCGCCGGAGGAGGTGTGATGCGGGTNTTCATGCACTGCGAAGGGTGCGCTCGCAAGGTCAAGAAGATACTCAGGGGATTTAATGGAGTGGAAGATGTTGTCGCGGACTCGAAAGCTCACAAGGTGATCNTAAAGGGAAAGAAGGCTNCTNCTTGACCCAATGAAGGTGGTNCACCGTNTCAGAAGAAGACAGGCCCAAGTTTNACTTTTNTTACCGATTCCACCT] [+] EMBL AU068697 [AGCAGGAGGAGAGGCAGGCAGCCATGGGCGAGGAGGAGAAGGTGAAGGAGGAGGCGGCGGCGGAGAAGGGGAAGGAGGCGGCGGTANGGAGGAGAAGGATNNGGCGGCGGCAGGGGAGGAGAAGAAGGAGGACGCGCCGCCGCCGCCACCGCCGGAGGAGGTGTGATGCGGGTNTTCATGCACTGCGAAGGGTGCGCTCGCAAGGTCAAGAAGATACTCAGGGGATTTAATGGAGTGGAAGATGTTGTCGCGGACTCGAAAGCTCACAAGGTGATCNTAAAGGGAAAGAAGGCTNCTNCTTGACCCAATGAAGGTGGTNCACCGTNTCAGAAGAAGACAGGCCCAAGTTTNACTTTTNTTACCGATTCCACCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13915#0 ------------------------------------------------------------ consensus_13915#3 ------------------------------------------------------------ consensus_13915#1 CGGCGAGGGAAGAGGGCGCAGAGAGCAGGAGGAGAGGCAGGCAGCCATGGGCGAGGAGGA 60 consensus_13915#2 ------------------------------------------------------------ consensus_13915#0 ------------------------------------------------------------ consensus_13915#3 ------------------------------------------------------------ consensus_13915#1 GAAGGCTGCTGCTGACCCAATGAAGGTGGTGCACCGTGTGCAGAAGAAGACAGGCCGCAA 120 consensus_13915#2 ------------------------------------------------------------ consensus_13915#0 ------------------------------------------------------------ consensus_13915#3 ------------------------------------------------------------ consensus_13915#1 GGTTGAGCTTCTATCACCGATNGCACTCCGGTGGAGGAGAAGAAGGAAGAGGAGAAAAAG 180 consensus_13915#2 ------------------------------------------------------------ consensus_13915#0 ------------------------------------------------------------ consensus_13915#3 ------------------------------------------------------------ consensus_13915#1 GAAGAGCCCGAGCCACCAAAACCTGAAGAGAAGGAGCCAACGGTGATAGCGGTGGTCCTG 240 consensus_13915#2 ------------------------------------------------------------ consensus_13915#0 ------------------------------------------------------------ consensus_13915#3 ------------------------------------------------------------ consensus_13915#1 AAGGTGCATATGCATTGTGAGGCCTGTGCGCAAGTTATCAGGAAGAAAATCCTCAAGATG 300 consensus_13915#2 ------------------------------------------------------------ consensus_13915#0 ------------------------------------------------------------ consensus_13915#3 ------------------------------------------------------------ consensus_13915#1 AAAGGAGTGCAATCAGCAGAGCCAGACATGAAGGCATCACAAGTGACGGTGAAGGGTGTG 360 consensus_13915#2 ------------------------------------------------------------ consensus_13915#0 ---------AGTGAGCCACCACCAGAGGCGTGACCGAATCGGCTAGCGAGTGAGAGAGGA 51 consensus_13915#3 ------------------------------------------------------------ consensus_13915#1 TTTGAGGAGTCAAAGCTCACCGATTACGTGCATAAACGCATTGGTAAGAATGCCGCCGTT 420 consensus_13915#2 ------------------------------------------------------------ consensus_13915#0 GGAGCAGTTCACAGTTGCAGTTCCACGCTCGCAGTAGTGTCCAGAGCAGAGCGCGAGGGA 111 consensus_13915#3 ------------------------------------------------------------ consensus_13915#1 GTAAAATCTGAACCAGCCCCTCCCCCTGAGAATGCTGGCGATGCAAATGCAAAGGATGAC 480 consensus_13915#2 ---------------------------------------------AGCGCGAGGGAAGAG 15 consensus_13915#0 AGAGGGCGCAGAGAGCAGGAG--GAGAGGCAGCCATGGGCGAGGAGGAGAAGGTGAAGGA 169 consensus_13915#3 ---------AGCAGGAGGAGA--GGCAGGCAGCCATGGGCGAGGAGGAGAAGGTGAAGGA 49 consensus_13915#1 AA-GAAGGCGGCCGAAGGTGGCGAGGAGAAGGACGAGAGCAAGGAGGAAAAGAAGGAAGG 539 consensus_13915#2 GGCGCAGAGAGCAGGAGGAGA--GGCAGGCAGCCATGGGCGAGGAGAAGAAGGAAGAGGA 73 * * ** * * * ** ***** * *** * * consensus_13915#0 GGAGGCGGCGGCGGAGAAGGGGAAGGAGGCGGCGGTAGCGGAGGAGAAGGAGGCGGCGGC 229 consensus_13915#3 GGAGGCGGCGGCGGAGAAGGGGAAGGAGGCGGCGGTAN-GGAGGAGAAGGATNNGGCGGC 108 consensus_13915#1 TGATGATGAGAGGGGTGATGAGAAAGAAAAGGAGAAAGAGAAGGGTGATAGCAATGCTGC 599 consensus_13915#2 AAAGAAGGAAGGTGATGATGAGAAAGAAAAGGAGAAAGAGAAGGATGATAGCAATGCTGC 133 * * * * * *** ** ** * * * *** * ** ** consensus_13915#0 GGCAGGGGAGGAG---AAGAAGGAGAACGCGCCGCC-NCCNCCGCCACCGCCGGAGGAGG 285 consensus_13915#3 GGCAGGGGAGGAG---AAGAAGGAGGACGCGCCGCC-GCCGCC---ACCGCCGGAGGAGG 161 consensus_13915#1 CGAGGTTGAAGAG---GACAAAGAGAAAGATCCTTCAGCCTTGGCTGCTGCTAATCTGTA 656 consensus_13915#2 CGAGGTTGAAGAGAAGGACAAAGAGAAAGATCCTTCAGCCTTGGCTGCTGCTAATCTGTA 193 * * ** *** * ** *** * * ** * ** * ** consensus_13915#0 TGGTGATG--CGGGTCTTCATGCACTGCGAAGGGTGCGCT-CGCAAGGTCAAGAAGATAC 342 consensus_13915#3 TG-TGATG--CGGGTNTTCATGCACTGCGAAGGGTGCGCT-CGCAAGGTCAAGAAGATAC 217 consensus_13915#1 TATGCATTACCAAAGATTCAGCAACCCTGGTGGATATGGTGTTCCCGGCTACGCATACCC 716 consensus_13915#2 TATGCATTACCCAAGATTCAGCAACCCTGGTGGATATGGTGTTCCTGGCTACGCATACCC 253 * ** * **** ** * ** * * * * ** * * * * * consensus_13915#0 TCAGGGGA--------TTTGATGGAGTGGA---AGATGT---TGTCGCGGACTCGAAAGC 388 consensus_13915#3 TCAGGGGA--------TTTAATGGAGTGGA---AGATGT---TGTCGCGGACTCGAAAGC 263 consensus_13915#1 GTATGCGCCACAGCTTTTTAGCGACGAGAATCCGAACGCCTGTGTTGTGATGTGAGAAGG 776 consensus_13915#2 GTATGCGCCGCAGCTCTTCAGTGACGAGAATCCAAACGCCTGTGTTGTGATGTGAGAAGG 313 * * * ** * * * * * * *** * * * *** consensus_13915#0 TCA---CAAGGTGATCGTGA---AGGGAAAGAAGGCTG---CTGCT-GACCC-------- 430 consensus_13915#3 TCA---CAAGGTGATCNTAA---AGGGAAAGAAGGCTN---CTNCTTGACCC-------- 306 consensus_13915#1 TGAGAACAATGAGATCCAAATTGGGGAAAATAAGAGTGAGACTACGCATCCCCTAACTTT 836 consensus_13915#2 TGAGAACAATGAGGTCCAAATTGGGGGAAATAAGAGTGAGACTACGCATCCCCTAACTTC 373 * * *** * * ** * ** *** *** * ** * *** consensus_13915#0 -----AATGAAGGTGGTGCACCGTGTGCAGAAGAAGACAGGCCG---CAAGGTTGAGCTT 482 consensus_13915#3 -----AATGAAGGTGGTNCACCGTNT-CAGAAGAAGACAGGCC----CAAGTTTNA-CTT 355 consensus_13915#1 TGGGGGGTGAAATTGGCTGTTCGAATATAGGATCAAGCAAGCCATTTTGGTTTCTAACTG 896 consensus_13915#2 TGGGGGGTGAAATCGGCTGTTCGAAGATAGGATCAAGCAAGCCATTTTGGTTTCTAACTG 433 **** ** ** ** * * ** *** * * ** consensus_13915#0 CTATCACCGATGCCACCTCCGGTGGAGGAGAAGAAGGAAGAGGAGAAAAAGGAAGAGCCC 542 consensus_13915#3 TTNTTACCGATTCCACCT------------------------------------------ 373 consensus_13915#1 TTCTCATGTAATTAAAATGTGAACTGTTGGCCTCGTCTCTATTGTTGGCCTTCATGGACA 956 consensus_13915#2 TTCTCATGTAATTAAAATGTGAACTGTTGGCCTCGTCTCTATTGTCGGCCTTCATGGACA 493 * * * * * * consensus_13915#0 GAGCCACCAAAACCTGAAGAGAAGGAGCCAACGGTGATAGCGGTGGTCCTGAAGGTGCAT 602 consensus_13915#3 ------------------------------------------------------------ consensus_13915#1 TTATTTTATGTAAGCTAAAAATGTAGGATTTTGCTTTGTACTTTCTCTCTATTGGCTTTC 1016 consensus_13915#2 TTATATTATGTAAGCTAAAAATGTAGGATTTTGCTTTGAGCTTTCTCTCTATTGGCTTTC 553 consensus_13915#0 ATGCATTGTGAGGCCTGTGCGCAAGTTATCAGGAAGAAAATCCTCAAGATGAAAGGAGTG 662 consensus_13915#3 ------------------------------------------------------------ consensus_13915#1 CTTTTGTAAAAATTGTATAATATATATTGTTAGTGTTGAAAAAAAAAAAAAAA------- 1069 consensus_13915#2 CTTTTGTAAAAATTGTATAATATATATATT------------------------------ 583 consensus_13915#0 CAATCAGCAGAGCCAGACATGAAGGCATCACAAGTGACGGTGAAGGGTGTGTTTGAGGAG 722 consensus_13915#3 ------------------------------------------------------------ consensus_13915#1 ------------------------------------------------------------ consensus_13915#2 ------------------------------------------------------------ consensus_13915#0 TCAAAGCTCACCGATTACGTGCATAAACGCATTGGTAAGAATGCCGCCGTTGTAAAATCT 782 consensus_13915#3 ------------------------------------------------------------ consensus_13915#1 ------------------------------------------------------------ consensus_13915#2 ------------------------------------------------------------ consensus_13915#0 GAACCAGCCCCTCCCCCTGAGAATGCTGGCGATGCAAATGCAAAGGATGACAAGAAGGCG 842 consensus_13915#3 ------------------------------------------------------------ consensus_13915#1 ------------------------------------------------------------ consensus_13915#2 ------------------------------------------------------------ consensus_13915#0 GCCGAAGGTGGCGAGGAGAAGGACGAGAGCAAGGAGGAAAAGAAGGAAGGTGATGATGAG 902 consensus_13915#3 ------------------------------------------------------------ consensus_13915#1 ------------------------------------------------------------ consensus_13915#2 ------------------------------------------------------------ consensus_13915#0 AAAGAAAAGGAGAAAGAGAAGGATGATAGCAATGCTGCCGAGGTTGAAGAGAAGGACAAA 962 consensus_13915#3 ------------------------------------------------------------ consensus_13915#1 ------------------------------------------------------------ consensus_13915#2 ------------------------------------------------------------ consensus_13915#0 GAGAAAGATCCTTCAGCCTTGGCTGCTGCTAATCTGTATATGCATTACCCAAGATTCAGC 1022 consensus_13915#3 ------------------------------------------------------------ consensus_13915#1 ------------------------------------------------------------ consensus_13915#2 ------------------------------------------------------------ consensus_13915#0 AACCCTGGTGGATATGGTGTTCCTGGCTACGCATACCCGTATGCGCCGCAGCTCTTCAGT 1082 consensus_13915#3 ------------------------------------------------------------ consensus_13915#1 ------------------------------------------------------------ consensus_13915#2 ------------------------------------------------------------ consensus_13915#0 GACGAGAATCCAAACGCCTGTGTTGTGATGTGAGAAGGTGAGAACAATGAGGTCCAAATT 1142 consensus_13915#3 ------------------------------------------------------------ consensus_13915#1 ------------------------------------------------------------ consensus_13915#2 ------------------------------------------------------------ consensus_13915#0 GGGGGAAATAAGAGTGAGACTACGCATCCCCTAACTTCTGGGGGGTGAAATCGGCTGTTC 1202 consensus_13915#3 ------------------------------------------------------------ consensus_13915#1 ------------------------------------------------------------ consensus_13915#2 ------------------------------------------------------------ consensus_13915#0 GAAGATAGGATCAAGCAAGCCATTTTGGTTTCTAACTGTTCTCATGTAATTAAAATGTGA 1262 consensus_13915#3 ------------------------------------------------------------ consensus_13915#1 ------------------------------------------------------------ consensus_13915#2 ------------------------------------------------------------ consensus_13915#0 ACTGTTGGCCTCGTCTCTATTGTCGGCCTTCATGGACATTATATTATGTAAGCTAAAAAT 1322 consensus_13915#3 ------------------------------------------------------------ consensus_13915#1 ------------------------------------------------------------ consensus_13915#2 ------------------------------------------------------------ consensus_13915#0 GTAGGATTTTGCTTTGAGCTTTCTCTCTATTGGCTTTCCTTTTGTAAAAATTGTATAATA 1382 consensus_13915#3 ------------------------------------------------------------ consensus_13915#1 ------------------------------------------------------------ consensus_13915#2 ------------------------------------------------------------ consensus_13915#0 TATATATTGTTAGTGTTGAAATAGCTTGTGTATCCTTGTTATTGTCTCAGGAGGAGCACC 1442 consensus_13915#3 ------------------------------------------------------------ consensus_13915#1 ------------------------------------------------------------ consensus_13915#2 ------------------------------------------------------------ consensus_13915#0 CTCTAGT 1449 consensus_13915#3 ------- consensus_13915#1 ------- consensus_13915#2 ------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||