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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13917#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1400 fasta sequence
[ACGTGCACTTTGGGTTGCTCATGCACTGGCTTAATTTCTGAAGATGAGTAATCTGCTCAAGGCTAAGAGCTGGGTACCAGAGGAGAAAGCTGCAGCGACTGCTTCTGATGAACAGAATGACAAGATAAAGAAAGTCCGGGAACTCCTGGGAAGCCAGATGACAGCAGAGATGCCGTCATTCTTGTCGGACGCCACCATCCGCCGCTTCCTCCGGGCAAGGAACTGGAGCACGGAGCAAGCAACCAAGGCTCTCAAAGAGACTGTCAAATGGAGGCGTCAGTACAGGCCGGACACAATCCGCTGGGAAGACATTCCTGGAAGGGAGCACGAAGCTAGGAGAACATATATAGCCGACTACTTTGATAAGAATGGAAGGATCGTCTTCATATCGAATCCGACAATTAAGGTTCATTAACTGATCATGCATTTAATGACCGGCAGAGTACCCTGTTAACTATTTTTTTTATTAGTCTAACAGAGTACTCATCCATCCCATAATATAAGAGATTTTGGGTGGATATGAGATATGTCCAGATTCATTGTATTAGGATGTGTCACATCCAATCAAAATCTCTTATATTATGGGACGGTGGGAGAAACTTTGAGTCTTCAACTAATTTTCTAAATTATTTATATATTCGAATTTACCACCAATATATGTTGTTTCACTTGTCTGACAACAGAGTAAATCATCCACCAAGGACCAGATAAAACAGTTAGTGTATAACCTGGAGATTTTTGCCATGCACTCAGAAAACATGGAAGACGAATGTACTGTTTGGTTAACTGACTTTCAAGGCTGGGT-GCTAACAAATACGCCATTGCCGTTGCTTCGTGAATGCACTCACATAATTCAAAACCATTATCCAGGGCTGATTTCTGTCGCAATCCTCAGCAACCCACCAAGGATTTTCGAATCCTTTTGGAAGATTGTGTGCTATTTCATTGAGCCAAAGTTGAAAGAAAAAGTGAAGTTCGTATATACTAACAATCCAGAGAGCCACAAGATAGTTGCTGATATGTTTGATTTGGACAAGCTGGAGTCTGCATTTGGGGGGAGGAACACACTTCCATTTGACATGGACAAGTATGCAGAGAGAATGAAACGAAGTGACCAAATGAGAGGAGCTCCCATGCATGCCAATGGCTACTCTTGCTCTACCCAAACCTGACCACATAAAAGTTCACCTTAATTTCTTTTAGTTTCATATAAAGTGGCATAAATATATATACGCCGGTTAGATCTGAATAAGTGATGCATGTCACTCTTAGGTAGGATTTTGAGGCGGGCGGACCTGAGTAAAACTCCATGACAAATTATGTACAAGGAAGAAGCTAATCATGTAATAACCCAAATTTCAGTTGCGTTAATTATAGTGGTAAAAAAAAAAAAAAAAAAA]
[+] EMBL CB664737 [ACGTGCACTTTGGGTTGCTCATGCACTGGCTTAATTTCTGAAGATGAGTAATCTGCTCAAGGCTAAGAGCTGGGTACCAGAGGAGAAAGCTGCAGCGACTGCTTCTGATGAACAGAATGACAAGATAAAGAAAGTCCGGGAACTCCTGGGAAGCCAGATGACAGCAGAGATGCCGTCATTCTTGTCGGACGCCACCATCCGCCGCTTCCTCCGGGCAAGGAACTGGAGCACGGAGCAAGCAACCAAGGCTCTCAAAGAGACTGTCAAATGGAGGCGTCAGTACAGGCCGGACACAATCCGCTGGGAAGACATTCCTGGAAGGGAGCACGAAGCTAGGAGAACATATATAGCCGACTACTTTGATAAGAATGGAAGGATCGTCTTCATATCGAATCCGACAATTAAGGTTCATTAACTGATCATGCATTTAATGACCGGCAGAGTACCCTGTTAACTATTTTTTTTATTAGTCTAACAGAGTACTCATCCATCCCATAATATAAGAGATTTTGGGTGGATATGAGATATGTCCAGATTCATTGTATTAGGATGTGTCACATCCAATCAAAATCTCTTATATTATGGGACGGTGGGAGAAACTTTGAGTCTTCAACTAATTTTCTAAATTATTTATATATTCGAATTTACCACCAATATATGTTGTTTCACTTGTCTGACAACAGAGTAAATCATCCACCAAGGACCAGATAAAACAGTTAGTGTATAACCTGGAGATTTTTGCCATGCACTCAGAAAACATGGAAGACGAATGTACTGTTTGGTTAACTGACTTTCAAGGCTGGGTGGCT ACAAATACGCCATTGCCGTTGCTTCGTGAATGCACTCACATAAT ]
[+] EMBL CB664699 [ACGTGCACTTTGGGTTGCTCATGCACTGGCTTAATTTCTGAAGATGAGTAATCTGCTCAAGGCTAAGAGCTGGGTACCAGAGGAGAAAGCTGCAGCGACTGCTTCTGATGAACAGAATGACAAGATAAAGAAAGTCCGGGAACTCCTGGGAAGCCAGATGACAGCAGAGATGCCGTCATTCTTGTCGGACGCCACCATCCGCCGCTTCCTCCGGGCAAGGAACTGGAGCACGGAGCAAGCAACCAAGGCTCTCAAAGAGACTGTCAAATGGAGGCGTCAGTACAGGCCGGACACAATCCGCTGGGAAGACATTCCTGGAAGGGAGCACGAAGCTAGGAGAACATATATAGCCGACTACTTTGATAAGAATGGAAGGATCGTCTTCATATCGAATCCGACAATTAAGGTTCATTAACTGATCATGCATTTAATGACCGGCAGAGTACCCTGTTAACTATTTTTTTTATTAGTCTAACAGAGTACTCATCCATCCCATAATATAAGAGATTTTGGGTGGATATGAGATATGTCCAGATTCATTGTATTAGGATGTGTCACATCCAATCAAAATCTCTTATATTATGGGACGGTGGGAGAAACTTTGAGTCTTCAACTAATTTTCTAAATTATTTATATATTCGAATTTACCACCAATATATGTTGTTTCACTTGTCTGACAACAGAGTAAATCATCCACCAAGGACCAGATAAAACAGTTAGTGTATAACCTGGAGATTTTTGCCATGCACTCAGAAAACATGGAAGACGAATGTACTGTTTGGTTAACTGACTTTCAAGGCTGGGT GCTAAC AATACGCCAT ]
[-] EMBL CB664738 [ TATTAGGATGTGTCACATCCAATCAAAATCTCTTATATTATGGGACGGTGGGAGAAACTTTGAGTCTTCAACTAATTTTCTAAATTATTTATATATTCGAATTTACCACCAATATATGTTGTTTCACTTGTCTGACAACAGAGTAAATCATCCACCAAGGACCAGATAAAACAGTTAGTGTATAACCTGGAGATTTTTGCCATGCACTCAGAAAACATGGAAGACGAATGTACTGTTTGGTTAACTGACTTTCAAGGCTGGGT GCTAACAAATACGCCATTGCCGTTGCTTCGTGAATGCACTCACATAATTCAAAACCATTATCCAGGGCTGATTTCTGTCGCAATCCTCAGCAACCCACCAAGGATTTTCGAATCCTTTTGGAAGATTGTGTGCTATTTCATTGAGCCAAAGTTGAAAGAAAAAGTGAAGTTCGTATATACTAACAATCCAGAGAGCCACAAGATAGTTGCTGATATGTTTGATTTGGACAAGCTGGAGTCTGCATTTGGGGGGAGGAACACACTTCCATTTGACATGGACAAGTATGCAGAGAGAATGAAACGAAGTGACCAAATGAGAGGAGCTCCCATGCATGCCAATGGCTACTCTTGCTCTACCCAAACCTGACCACATAAAAGTTCACCTTAATTTCTTTTAGTTTCATATAAAGTGGCATAAATATATATACGCCGGTTAGATCTGAATAAGTGATGCATGTCACTCTTAGGTAGGATTTTGAGGCGGGCGGACCTGAGTAAAACTCCATGACAAATTATGTACAAGGAAGAAGCTAATCATGTAATAACCCAAATTTCAGTTGCG ]
[-] EMBL CB664700 [ TTCACTTGTCTGACAACAGAGTAAATCATCCACCAAGGACCAGATAAAACAGTTAGTGTATAACCTGGAGATTTTTGCCATGCACTCAGAAAACATGGAAGACGAATGTACTGTTTGGTTAACTGACTTTCAAGGCTGGGT GCTAACAAATACGCCATTGCCGTTGCTTCGTGAATGCACTCACATAATTCAAAACCATTATCCAGGGCTGATTTCTGTCGCAATCCTCAGCAACCCACCAAGGATTTTCGAATCCTTTTGGAAGATTGTGTGCTATTTCATTGAGCCAAAGTTGAAAGAAAAAGTGAAGTTCGTATATACTAACAATCCAGAGAGCCACAAGATAGTTGCTGATATGTTTGATTTGGACAAGCTGGAGTCTGCATTTGGGGGGAGGAACACACTTCCATTTGACATGGACAAGTATGCAGAGAGAATGAAACGAAGTGACCAAATGAGAGGAGCTCCCATGCATGCCAATGGCTACTCTTGCTCTACCCAAACCTGACCACATAAAAGTTCACCTTAATTTCTTTTAGTTTCATATAAAGTGGCATAAATATATATACGCCGGTTAGATCTGAATAAGTGATGCAGGTCACTCTTAGGTAGGATTTTGAGGCGGGCGGACCTGAGTAAAACTCCATGACAAATTATGTACAAGGAAAAAGCTAATCATGTAATAACCCAA ]
[-] EMBL CA763437 [ ATAAAACAGTTAGGGTATAACCTGGAGATTTTTGCCATGCACTCAGAAAACATGGAAGCCGAATGTCCTGTTTGGTTAACTGGCTTTCAAGGCTGGGT GCTAACAAATACGCCATCGCCGTTGCTTCGTGAATGCACTCCCATAATTCAAAACCATTATCCAGGGCTGATTTCTGTCGCAATCCTCAGCAACCCACCAAGGATTTTCGAATCCTTTTGGAAGATTGTGTGCTATTTCATTGAGCCAAAGTTGAAAGAAAAAGTGAAGTTTGTATATACTAACAATCCAGAGAGCCCCAAGATAGTTGCTGATATGTTTGATTTGGACAAGCTGGAGTTTGCATTTGGGGGGAGGAACACACTTCCATTTGACATGGACAAGTATGCAGAGAGAATGAAACGAAGTGCCCAAATGAGAGGAGCTCCCATGCATGCCAATGGCTACTCTTGCTCTACCCAAACCTGACCACATAAAAGTTCACCTTAATTTCTTTTAGTTTCATATAAAGTGGCATAAATATATATACGCCGGTTAGATCTGAATAAGTGATGCATGTCACTTTTAGGTAGGATTTTGAGGCGGGCGGACCTGAGTAAAACTCCATGACAAATTATGTCCAAGGAAGAAGCTAATCATGTAATAACCCAAATTTCAGTTGCGTTAATTATAGTGGTAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_13917#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1217 fasta sequence
[TGATCTCTCTATATATTTTATGGATTACCTCTCTGTTTTTAAGGGAAGAGCTAGCGATCGAGCTCCAGTAGTATACGTGCACTTTGGGTTGCTCATGCACTGGCTTAATTTCTGAAGATGAGTAATCTGCTCAAGGCTAAGAGCTGGGTACCAGAGGAGAAAGCTGCAGCGACTGCTTCTGATGAACAGAATGACAAGATAAAGAAAGTCCGGGAACTCCTGGGAAGCCAGATGACAGCAGAGATGCCGTCATTCTTGTCGGACGCCACCATCCGCCGCTTCCTCCGGGCAAGGAAC-TGGAGCACGGAGCAAGCAACCAAGGCTCTCAAAGAGACTGTCAAATGGAGGCGTCAGTACAGGCCGGACACAATCCGCTGGGAAGACATTCCTGGAAGGGAGCACGAAGC-TAGGAGAACATATATAGCCGACTACTTTGATAAGAATGGAAGGATCGTCTTCATATCGAATCCGACAATTAAGAGTAAATCATCCACCAAGGACCAGATAAAACAGTTAGTGTATAACCTGGAGATTTTTGCCNTGCACTCAGAAAACATGGAAGACGAATGTACTGTTTGGTTAACTGACTTTCAAGGCTGGGTGCTAACAAATACGCCATTGCCGTTGCTTCGTGAATGCACTCACATAATTCAAAACCATTATCCAGGGCTGATTTCTGTCGCAATCCTCAGCAACCCACCAAGGATTTTCGAATCCTTTTGGAAGATTGTGTGCTATTTCATTGAGCCAAAGTTGAAAGAAAAAGTGAAGTTCGTATATACTAACAATCCAGAGAGCCACAAGATAGTTGCTGATATGTTTGATTTGGACAAGCTGGAGTCTGCATTTGGGGGGAGGAACACACTTCCATTTGACATGGACAAGTATGCAGAGAGAATGAAACGAAGTGACCAAATGAGAGGAGCTCCCATGCATGCCAATGGCTACTCTTGCTCTACCCAAACCTGACCACATAAAAGTTCACCTTAATTTCTTTTAGTTTCATATAAAGTGGCATAAATATATATACGCCGGTTAGATCTGAATAAGTGATGCATGTCACTCTTAGGTAGGATTTTGAGGCGGGCGGACCTGAGTAAAACTCCATGACAAATTATGTACAAGGAAGAAGCTAATCATGTAATAACCCAAATTTCAGTTGCGTTAATTATAGTGGTAAACACGCGCACCAGTCTTTAAACAGCAAAAAAAAAAAA]
[+] EMBL AK061207 [TGATCTCTCTATATATTTTATGGATTACCTCTCTGTTTTTAAGGGAAGAGCTAGCGATCGAGCTCCAGTAGTATACGTGCACTTTGGGTTGCTCATGCACTGGCTTAATTTCTGAAGATGAGTAATCTGCTCAAGGCTAAGAGCTGGGTACCAGAGGAGAAAGCTGCAGCGACTGCTTCTGATGAACAGAATGACAAGATAAAGAAAGTCCGGGAACTCCTGGGAAGCCAGATGACAGCAGAGATGCCGTCATTCTTGTCGGACGCCACCATCCGCCGCTTCCTCCGGGCAAGGAAC TGGAGCACGGAGCAAGCAACCAAGGCTCTCAAAGAGACTGTCAAATGGAGGCGTCAGTACAGGCCGGACACAATCCGCTGGGAAGACATTCCTGGAAGGGAGCACGAAGC TAGGAGAACATATATAGCCGACTACTTTGATAAGAATGGAAGGATCGTCTTCATATCGAATCCGACAATTAAGAGTAAATCATCCACCAAGGACCAGATAAAACAGTTAGTGTATAACCTGGAGATTTTTGCCATGCACTCAGAAAACATGGAAGACGAATGTACTGTTTGGTTAACTGACTTTCAAGGCTGGGTGCTAACAAATACGCCATTGCCGTTGCTTCGTGAATGCACTCACATAATTCAAAACCATTATCCAGGGCTGATTTCTGTCGCAATCCTCAGCAACCCACCAAGGATTTTCGAATCCTTTTGGAAGATTGTGTGCTATTTCATTGAGCCAAAGTTGAAAGAAAAAGTGAAGTTCGTATATACTAACAATCCAGAGAGCCACAAGATAGTTGCTGATATGTTTGATTTGGACAAGCTGGAGTCTGCATTTGGGGGGAGGAACACACTTCCATTTGACATGGACAAGTATGCAGAGAGAATGAAACGAAGTGACCAAATGAGAGGAGCTCCCATGCATGCCAATGGCTACTCTTGCTCTACCCAAACCTGACCACATAAAAGTTCACCTTAATTTCTTTTAGTTTCATATAAAGTGGCATAAATATATATACGCCGGTTAGATCTGAATAAGTGATGCATGTCACTCTTAGGTAGGATTTTGAGGCGGGCGGACCTGAGTAAAACTCCATGACAAATTATGTACAAGGAAGAAGCTA ]
[+] EMBL CA763517 [ ACCTCTCTGTTTTTAAGGGAAGAGCTAGCGATCGAGCTCCAGTAGTATACGTGCACTTTGGGTTGCTCATGCACTGGCTTAATTTCTGAAGATGAGTAATCTGCTCAAGGCTAAGAGCTGGGTACCAGAGGAGAAAGCTGCAGCGACTGCTTCTGATGAACAGAATGACAAGATAAAGAAAGTCCGGGAACTCCTGGGAAGCCAGATGACAGCAGAGATGCCGTCATTCTTGTCGG ]
[+] EMBL OSS11167A [ TCGAGCTCCAGTAGTATACGTGCACTTTGGGTTGCTCATGCACTGGCTTAATTTCTGAAGATGAGTAATCTGCTCAAGGCTAAGAGCTGGGTACCAGAGGAGAAAGCTGCAGCGACTGCTTCTGATGAACAGAATGACAAGATAAAGAAAGTCCGGGAACTCCTGGGAAGCCAGATGACAGCAGAGATGCCGTCATTCTTGTCGGACGCCACCATCCGCCGNTTCCTCCGGGCAAGGAAC TGGAGCACGGAGCAAGCAACCAAGGCTCTCAAAGAGACTGTCAAATGGAGGCGTCAGTACAGGCCGGACACAATCCGCTGGGAAGACATTCCTGGAAGGGAGCACGNAGCTTAGGAGAACATATATAGCCGACTACTTTGATAAGAATGGAAGGTCCGTCTTCATATCGAATCCGNCAATTAAGAG AAATCAT CACCAAGG CCAGAT ANACAGTTAGTGT T ANCTGG GGTTTTTG CNTG ACTCAGGAAACAT GAAG CG ATG ACTGTTg ]
[+] EMBL OSS11075A [ TCGAGCTCCAGTAGTATACGTGCACTTTGGGTTGCTCATGCACTGGCTTAATTTCTGAAGATGAGTAATCTGCTCAAGGCTAAGAGCTGGGTACCAGAGGAGAAAGCTGCAGGGACTGCTTCTGATGGACAGAATGACAAGGTAAAGNAAGTCCGGGAACTTCTGGGAAGCCAGGTTACAGCNGAGNTGCCGTCATTCTTTTNGGACGGCACCATCCGGCGGTTTCTTCGGGCAAGGAACTTGNAGCACGGAGCAAGCAA ]
[+] EMBL AU096416 [ GCTCCAGTAGTATACGTGCACTTTGGGTTGCTCATGCACTGGCTTAATTTCTGAAGATGAGTAATCTGCTCAAGGCTAAGAGCTGGGTACCAGAGGAGAAAGCTGCAGCGACTGCTTCTGATGAACAGAATGACAAGATAAAGAAAGTCCGGGAACTCCTGGGAAGCCAGATGACAGCAGAGATGCCGTCATTCTTGTCGGACGCCACCATCCGCCGCTTCCTCCGGGCAAGGAAC TGGAGCACGGAGCAAGCAACCAAGGCTCTCAAAGAGACTGTCAAATGGAGGCGTCAGTACAGGCCGGACACAATCCGCT ]
[-] EMBL CA763438 [ CTGGAGATTTTTGCCGTGCACTCAGAAAACATGGAAGACGAATGTACTGTTTGGTTAACTGACTTTCAAGGCTGGGTGCTAACAAATACGCCATTGCCGTTGCTTCGTGAATGCACTCACATAATTCAAAACCATTATCCAGGGCTGATTTCTGTCGCAATCCTCAGCAACCCACCAAGGATTTTCGAATCCTTTTGGAAGATTGTGTGCTATTTCATTGAGCCAAAGTTGAAAGAAAAAGTGAAGTTTGTATATACTAACAATCCAGAGAGCCACAAGATAGTTGCTGATATGTTTGATTTGGACAAGCTGGAGTCTGCATTTGGGGGGAGGAACACACTTCCATTTGACATGGACAAGTATGCAGAGAGAATGAAACGAAGTGACCAAATGAGAGGAGCTCCCATGCATGCCAATGGCTACTCTTGCTCTACCCAAACCTGACCACATAAAAGTTCACCTTAATTTCCTTTAGTTTCATATAAAGTGGCATAAATATATATACGCCGGTTAGATCTGAATAAGTGATGCATGTCACTCTTAGGTAGGATTTTGAGGCGGGCGGACCTGAGTAAAACTCCATGACAAATTATGTACAAGGAAGAAGCTAATCATGTAATAACCCAAATTTCAGTTGCGTTAATTATAGTGGTAAACACGCGCACCAGTCTTTAAACAGCAAAAAAAAAAAA]
consensusID : consensus_13917#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 550 fasta sequence
[TTGCCCGTTGCTTCGTGAATGCACTCACTAATTCAAAACCTTATCCAGGGCTGATTTCTGTCGCAATCCTCAGCAACCCNCCAAGGATTTTCGAATCCTTTTGGAAGATTGTGTGCTATTTCCATTGAGCCAAAGTTGNAAGAAAAAGTGAAGTTCGTATATACTAACAATCCAGAGAGCCNCAAGATAGTTGCTGATATGTTTGATTTGGACAAGCTGGAGTCTGNCATTTGGGGGGAGGAACACACTTNCCATTTGACATGGACAAGTATGCAGAGAGAATGAAACGAAGTGACCAAATGAGAGGAGCTCCCATGCATGCCAATGGCTACTCTTGCTCTACCCAAACCTGACCACATAAAAGTTCACCTTAATTTCTTTTAGTTTCATATAAAGTGGCATAAATATATATACGCCGGTTAGATCTGAATAAGTGATGCATGTCACTCTTAGGTAGGATTTTGAGGCGGGCGGACCTGAGTAAAACTCCATGACAAATTATGTACAAGGAAGAAGCTAATCATGTAATAACCCAAAAAAAAAAAAAAAA]
[+] EMBL AU096417 [TTGCCCGTTGCTTCGTGAATGCACTCACTAATTCAAAACCTTATCCAGGGCTGATTTCTGTCGCAATCCTCAGCAACCCNCCAAGGATTTTCGAATCCTTTTGGAAGATTGTGTGCTATTTCCATTGAGCCAAAGTTGNAAGAAAAAGTGAAGTTCGTATATACTAACAATCCAGAGAGCCNCAAGATAGTTGCTGATATGTTTGATTTGGACAAGCTGGAGTCTGNCATTTGGGGGGAGGAACACACTTNCCATTTGACATGGACAAGTATGCAGAGAGAATGAAACGAAGTGACCAAATGAGAGGAGCTCCCATGCATGCCAATGGCTACTCTTGCTCTACCCAAACCTGACCACATAAAAGTTCACCTTAATTTCTTTTAGTTTCATATAAAGTGGCATAAATATATATACGCCGGTTAGATCTGAATAAGTGATGCATGTCACTCTTAGGTAGGATTTTGAGGCGGGCGGACCTGAGTAAAACTCCATGACAAATTATGTACAAGGAAGAAGCTAATCATGTAATAACCCAAAAAAAAAAAAAAAA]
consensusID : consensus_13917#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 545 fasta sequence
[AAAACAAAAAAAAAAAAAAACTGGAGCACGAGGACACTGATATGGACTGAAGGAGTAGAAAAGTAGTATACGTGCACTTTGGGTTGCTCATGCACTGGCTTAATTTCTGAAGATGAGTAATCTGCTCAAGGCTAAGAGCTGGGTACCAGAGGAGAAAGCTGCAGCGACTGCTTCTGATGAACAGAATGACAAGATAAAGAAAGTCCGGGAACTCCTGGGAAGCCAGATGACAGCAGAGATGCCGTCATTCTTGTCGGACGCCACCATCCGCCGCTTCCTCCGGGCAAGGAACTGGAGCACGGAGCAAGCAACCAAGGCTCTCAAAGAGACTGTCAAATGGAGGCGTCAGTACAGGCCGGACACAATCCGCTGGGAAGACATTCCTGGAAGGGAGCACGAAGCTAGGAGAACATATATAGCCGACTACTTTGATAAGAATGGAAGGATCGTCTTCATATCGAATCCGACAATTAAGAGTAAATCATCCACCAAGGACCAGATAAGACAGTTAGTGTATAACCTGGAGATTTTTGCCATGCACTCAG]
[+] EMBL CF311556 [AAAACAAAAAAAAAAAAAAACTGGAGCACGAGGACACTGATATGGACTGAAGGAGTAGAAAAGTAGTATACGTGCACTTTGGGTTGCTCATGCACTGGCTTAATTTCTGAAGATGAGTAATCTGCTCAAGGCTAAGAGCTGGGTACCAGAGGAGAAAGCTGCAGCGACTGCTTCTGATGAACAGAATGACAAGATAAAGAAAGTCCGGGAACTCCTGGGAAGCCAGATGACAGCAGAGATGCCGTCATTCTTGTCGGACGCCACCATCCGCCGCTTCCTCCGGGCAAGGAACTGGAGCACGGAGCAAGCAACCAAGGCTCTCAAAGAGACTGTCAAATGGAGGCGTCAGTACAGGCCGGACACAATCCGCTGGGAAGACATTCCTGGAAGGGAGCACGAAGCTAGGAGAACATATATAGCCGACTACTTTGATAAGAATGGAAGGATCGTCTTCATATCGAATCCGACAATTAAGAGTAAATCATCCACCAAGGACCAGATAAGACAGTTAGTGTATAACCTGGAGATTTTTGCCATGCACTCAG]
consensusID : consensus_13917#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 318 fasta sequence
[CAACCCCCCAAGGATTTTTGAATCCTTTTGGAAAATTGTGGGGTATTTCATTGAGCCAAAGTTGAAAAAAAAAGTGAAGTTTGTATATATTAACAATCCAAAGAGCCCCAAAATAGTTGGGGAAATGTTTTATTTGGACAAGGTGGAGTTTGCATTTGGGGGGAGGAACACACTTCCATTTTACATGGCCAAGTATGCAGAGAGAATGAAATTAAGTGCCCAAATGAGAGGGGGTCCCATGCATGCCAATGGGTATTTTTGTTTTACCCAAACCGGACCAAATAAAAGTTCCCCTTAATTTTTTTTAGTTTCAAAAAA]
[-] EMBL CF311557 [CAACCCCCCAAGGATTTTTGAATCCTTTTGGAAAATTGTGGGGTATTTCATTGAGCCAAAGTTGAAAAAAAAAGTGAAGTTTGTATATATTAACAATCCAAAGAGCCCCAAAATAGTTGGGGAAATGTTTTATTTGGACAAGGTGGAGTTTGCATTTGGGGGGAGGAACACACTTCCATTTTACATGGCCAAGTATGCAGAGAGAATGAAATTAAGTGCCCAAATGAGAGGGGGTCCCATGCATGCCAATGGGTATTTTTGTTTTACCCAAACCGGACCAAATAAAAGTTCCCCTTAATTTTTTTTAGTTTCAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13917#2 ------------------------------------------------------------
consensus_13917#4 ------------------------------------------------------------
consensus_13917#0 ACGTGCACTTTGGGTTGCTCATGCACTGGCTTAATTTCTGAAGATGAGTAATCTGCTCAA 60
consensus_13917#1 ------------------------------------------------------------
consensus_13917#3 ------------------------------------------------------------
consensus_13917#2 ------------------------------------------------------------
consensus_13917#4 ------------------------------------------------------------
consensus_13917#0 GGCTAAGAGCTGGGTACCAGAGGAGAAAGCTGCAGCGACTGCTTCTGATGAACAGAATGA 120
consensus_13917#1 ------------------------------------------------------------
consensus_13917#3 ------------------------------------------------------------
consensus_13917#2 ------------------------------------------------------------
consensus_13917#4 ------------------------------------------------------------
consensus_13917#0 CAAGATAAAGAAAGTCCGGGAACTCCTGGGAAGCCAGATGACAGCAGAGATGCCGTCATT 180
consensus_13917#1 ------------------------------------------------------------
consensus_13917#3 ------------------------------------------------------------
consensus_13917#2 ------------------------------------------------------------
consensus_13917#4 ------------------------------------------------------------
consensus_13917#0 CTTGTCGGACGCCACCATCCGCCGCTTCCTCCGGGCAAGGAACTGGAGCACGGAGCAAGC 240
consensus_13917#1 -----------------------TGATCTCTCTATATATTTTATGGATTACCTCTCTGTT 37
consensus_13917#3 ------------------------------------------------------------
consensus_13917#2 ------------------------------------------------------------
consensus_13917#4 ------------------------------------------------------------
consensus_13917#0 AACCAAGGCTCTCAAAGAGACTGTCAAATGGAGGCGTCAGTACAGGCCGGACACAATCCG 300
consensus_13917#1 TTTAAGGGAAGAGCTAGCGATCGAGCTCCAGTAGTATACGTGCACTTTGGGTTGCTCATG 97
consensus_13917#3 ------------------------------------------------------------
consensus_13917#2 ------------------------------------------------------------
consensus_13917#4 ------------------------------------------------------------
consensus_13917#0 CTGGGAAGACATTCCTGGAAGGGAGCACGAAGCTAGGAGAACATATATAGCCGACTACTT 360
consensus_13917#1 CACTGGCTTAATTTCTGAAGATGAGTAATCTGCTCAAGGCTAAGAGCTGGGTACCAGAGG 157
consensus_13917#3 ------------------------------------------------------------
consensus_13917#2 ------------------------------------------------------------
consensus_13917#4 ------------------------------------------------------------
consensus_13917#0 TGATAAGAATGGAAGGATCGTCTTCATATCGAATCCGACAATTAAGGTTCATTAACTGAT 420
consensus_13917#1 AGAAAGCTGCAGCGACTGCTTCTGATGAACAGAATGACAAGATAAAGAAAGTCCGGGAAC 217
consensus_13917#3 ------------------------------------------------------------
consensus_13917#2 ------------------------------------------------------------
consensus_13917#4 ------------------------------------------------------------
consensus_13917#0 CATGCATTTAATGACCGGCAGAGTACCCTGTTAACTATTTTTTTTATTAGTCTAACAGAG 480
consensus_13917#1 TCCTGGGAAGCCAGATGACAGCAGAGATGCCGTCATTCTTGTCGGACGCCACCATCCGCC 277
consensus_13917#3 ------------------------------------------------------------
consensus_13917#2 ------------------------------------------------------------
consensus_13917#4 ------------------------------------------------------------
consensus_13917#0 TACTCATCCATCCCATAATATAAGAGATTTTGGGTGGATATGAGATATGTCCAGATTCAT 540
consensus_13917#1 GCTTCCTCCGGGCAAGGAACTGGAGCACGGAGCAAGCAACCAAGGCTCTCAAAGAGACTG 337
consensus_13917#3 ------------------------------------------------------------
consensus_13917#2 ------------------------------------------------------------
consensus_13917#4 ------------------------------------------------------------
consensus_13917#0 TGTATTAGGATGTGTCACATCCAATCAAAATCTCTTATATTATGGGACGGTGGGAGAAAC 600
consensus_13917#1 TCAAATGGAGGCGTCAGTACAGGCCGGACACAATCCGCTGGGAAGACATTCCTGGAAGGG 397
consensus_13917#3 ------------------------------------------------------------
consensus_13917#2 ------------------------------------------------------------
consensus_13917#4 ------------------------------------------------------------
consensus_13917#0 TTTGAGTCTTCAACTAATTTTCTAAATTATTTATATATTCGAATTTACCACCAATATATG 660
consensus_13917#1 AGCACGAAGCTAGGAGAACATATATAGCCGACTACTTTGATAAGAATGGAAGGATCGTCT 457
consensus_13917#3 ------------------------------------------------------------
consensus_13917#2 ------------------------------------------------------------
consensus_13917#4 ------------------------------------------------------------
consensus_13917#0 TTGTTTCACTTGTCTGACAACAGAGTAAATCATCCACCAAGGACCAGATAAAACAGTTAG 720
consensus_13917#1 TCATATCGAATCCGACAATTAAGAGTAAATCATCCACCAAGGACCAGATAAAACAGTTAG 517
consensus_13917#3 ------------------------------------------------------------
consensus_13917#2 ------------------------------------------------------------
consensus_13917#4 ------------------------------------------------------------
consensus_13917#0 TGTATAACCTGGAGATTTTTGCCATGCACTCAGAAAACATGGAAGACGAATGTACTGTTT 780
consensus_13917#1 TGTATAACCTGGAGATTTTTGCCNTGCACTCAGAAAACATGGAAGACGAATGTACTGTTT 577
consensus_13917#3 ----------------------------------------------------------AA 2
consensus_13917#2 ----------------------------------------TTGCCCGTTGCTTCGTGAAT 20
consensus_13917#4 ------------------------------------------------------------
consensus_13917#0 GGTTAACTGACTTTCAAGGCTGGGTGCTAACAAATACGCCATTGCCGTTGCTTCGTGAAT 840
consensus_13917#1 GGTTAACTGACTTTCAAGGCTGGGTGCTAACAAATACGCCATTGCCGTTGCTTCGTGAAT 637
consensus_13917#3 AACAAAAAAAAAAAAAAACTGGAGCACGAGGACACTGATATGGACTGAAGGAGTAGAAAA 62
consensus_13917#2 GCACTCAC-TAATTCAAAACC-TTATCCAGGGCTGATTTCTGTCGCAATCCTCAGCAACC 78
consensus_13917#4 -------------------------------------------------------CAACC 5
consensus_13917#0 GCACTCACATAATTCAAAACCATTATCCAGGGCTGATTTCTGTCGCAATCCTCAGCAACC 900
consensus_13917#1 GCACTCACATAATTCAAAACCATTATCCAGGGCTGATTTCTGTCGCAATCCTCAGCAACC 697
consensus_13917#3 GTAGTATACGTGCACTTTGGGTTGCTCATGCACTGGCTTAATTTCTGAAGATGAGTAATC 122
** *
consensus_13917#2 CNCCAAGGATTT----TCGAATCCTTTTGGAAGATTGTG----TGCTATTTCCATTGAGC 130
consensus_13917#4 CCCCAAGGATTT----TTGAATCCTTTTGGAAAATTGTG----GGGTATTTC-ATTGAGC 56
consensus_13917#0 CACCAAGGATTT----TCGAATCCTTTTGGAAGATTGTG----TGCTATTTC-ATTGAGC 951
consensus_13917#1 CACCAAGGATTT----TCGAATCCTTTTGGAAGATTGTG----TGCTATTTC-ATTGAGC 748
consensus_13917#3 TGCTCAAGGCTAAGAGCTGGGTACCAGAGGAGAAAGCTGCAGCGACTGCTTCTGATGAAC 182
* * * * * * * *** * ** * *** *** *
consensus_13917#2 CAAAGTTGNAAGAAAAAGTGAAGTTCGTATATACTAACAATCCAGAGAGCCNCAAGATAG 190
consensus_13917#4 CAAAGTTGAAAAAAAAAGTGAAGTTTGTATATATTAACAATCCAAAGAGCCCCAAAATAG 116
consensus_13917#0 CAAAGTTGAAAGAAAAAGTGAAGTTCGTATATACTAACAATCCAGAGAGCCACAAGATAG 1011
consensus_13917#1 CAAAGTTGAAAGAAAAAGTGAAGTTCGTATATACTAACAATCCAGAGAGCCACAAGATAG 808
consensus_13917#3 -AGAATGACAAGATAAAGAAAGTCCGGGAACTCCTGGGAAGCCAGATGACAGCAGAGATG 241
* * * ** * **** * * * * * ** *** * * ** *
consensus_13917#2 TTGCTGATATGTTTGATTTGGACAAGCTGGAGTCTGNCATTTGGGGGGAGGAACACACTT 250
consensus_13917#4 TTGGGGAAATGTTTTATTTGGACAAGGTGGAGTTTGC-ATTTGGGGGGAGGAACACACTT 175
consensus_13917#0 TTGCTGATATGTTTGATTTGGACAAGCTGGAGTCTGC-ATTTGGGGGGAGGAACACACTT 1070
consensus_13917#1 TTGCTGATATGTTTGATTTGGACAAGCTGGAGTCTGC-ATTTGGGGGGAGGAACACACTT 867
consensus_13917#3 CCGTCATTCTTGTCGGACGCCACCATCCGCCGCTTCC---TCCGGGCAAGGAACTGGAGC 298
* * * ** * * * * * *** ******
consensus_13917#2 NCCATTTGACATGGACAAGTATGCAGAGAGAATG--AAACGAAGTGACCAAATGAGAGGA 308
consensus_13917#4 CC-ATTTTACATGGCCAAGTATGCAGAGAGAATG--AAATTAAGTGCCCAAATGAGAGGG 232
consensus_13917#0 CC-ATTTGACATGGACAAGTATGCAGAGAGAATG--AAACGAAGTGACCAAATGAGAGGA 1127
consensus_13917#1 CC-ATTTGACATGGACAAGTATGCAGAGAGAATG--AAACGAAGTGACCAAATGAGAGGA 924
consensus_13917#3 ACGGAGCAAGCAACCAAGGCTCTCAAAGAGACTGTCAAATGGAGGCGTCAGTACAGGCCG 358
* * * * ** ***** ** *** ** ** **
consensus_13917#2 GCTCCCATGCATGCCAATGGCTACTCTTGCTCTA---CCCAAACCTGACCACATAAAAGT 365
consensus_13917#4 GGTCCCATGCATGCCAATGGGTATTTTTGTTTTA---CCCAAACCGGACCAAATAAAAGT 289
consensus_13917#0 GCTCCCATGCATGCCAATGGCTACTCTTGCTCTA---CCCAAACCTGACCACATAAAAGT 1184
consensus_13917#1 GCTCCCATGCATGCCAATGGCTACTCTTGCTCTA---CCCAAACCTGACCACATAAAAGT 981
consensus_13917#3 GACACAATCCGC-TGGGAAGACATTCCTGGAAGGGAGCACGAAGCTAGGAGAACATATAT 417
* * ** * * * * ** * * ** * * * * *
consensus_13917#2 TCACCTTAATTTCTTTTAGTTTCATATAAAGTGGCATAAATATATATACGCCGGTTAGAT 425
consensus_13917#4 TCCCCTTAATTTTTTTTAGTTTCAAAAAA------------------------------- 318
consensus_13917#0 TCACCTTAATTTCTTTTAGTTTCATATAAAGTGGCATAAATATATATACGCCGGTTAGAT 1244
consensus_13917#1 TCACCTTAATTTCTTTTAGTTTCATATAAAGTGGCATAAATATATATACGCCGGTTAGAT 1041
consensus_13917#3 AGCCGACTACTTTGATAAGAATGGAAGGAT-CGTCTTCATATCGAATCCGACAATTAAGA 476
* * ** * ** * * *
consensus_13917#2 CTGAATAAGTGATGCATGTCACTCTTAGGTAGG-ATTTTGAGGCGGGCGGACCTGAGTAA 484
consensus_13917#4 ------------------------------------------------------------
consensus_13917#0 CTGAATAAGTGATGCATGTCACTCTTAGGTAGG-ATTTTGAGGCGGGCGGACCTGAGTAA 1303
consensus_13917#1 CTGAATAAGTGATGCATGTCACTCTTAGGTAGG-ATTTTGAGGCGGGCGGACCTGAGTAA 1100
consensus_13917#3 GTAAATCATCCACCAAGGACCAGATAAGACAGTTAGTGTATAACCTGGAGATTTTTGCCA 536
consensus_13917#2 AACTCCATGACAAATTATGTACAAGGAAGAAGCTAATCATGTAATAACCCAAAAAAAAAA 544
consensus_13917#4 ------------------------------------------------------------
consensus_13917#0 AACTCCATGACAAATTATGTACAAGGAAGAAGCTAATCATGTAATAACCCAAATTTCAGT 1363
consensus_13917#1 AACTCCATGACAAATTATGTACAAGGAAGAAGCTAATCATGTAATAACCCAAATTTCAGT 1160
consensus_13917#3 TGCACTCAG--------------------------------------------------- 545
consensus_13917#2 AAAAAA--------------------------------------------------- 550
consensus_13917#4 ---------------------------------------------------------
consensus_13917#0 TGCGTTAATTATAGTGGTAAAAAAAAAAAAAAAAAAA-------------------- 1400
consensus_13917#1 TGCGTTAATTATAGTGGTAAACACGCGCACCAGTCTTTAAACAGCAAAAAAAAAAAA 1217
consensus_13917#3 ---------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||