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Oryza sativa
cluster # 13922 cluster # 13922       Sequences # 14       consensus # 5


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_13922#0 length = 1475 sequences # 10  
consensus_13922#1 length = 737 sequences # 1  
consensus_13922#2 length = 436 sequences # 1  
consensus_13922#3 length = 295 sequences # 1  
consensus_13922#4 length = 119 sequences # 1  

consensusID : consensus_13922#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 10
consensus length = 1475
fasta sequence
                              [CCCTTTTATTTTTTTTTTTTAAAAAAAAAACAAAGAGATGAATATAGTATTGCTGCTGATCTCCTCCTCTGAAATATCATACATTTGGTCGATCTGCTAGCTGCTACAGTCTACTTTTACTTACTAGTGAAAAGATAGTAAAAGAAGAAGAAAAGATTAAAAGATCAAGAAGATGGTGTACATTGATGCATCCATGGCGATCGATCGAAGAAAAATTCGAAATGGCTAGTTGTGTGTGGTGTTATTGTTGCCGCTGTTCTTGCGGAGGTGAGCAATGGCCTTCTTGAGGATTGGTCGGAACCTCTTCATGTCGAGACGAACATCCTGCTTGTCGAGGTAGGCTTCCTTGAGAGAATTCCAGCCTTTGGACTTGACGCCATCGGGGTCGGTGAAGATGGGGTGGTCTCGCGGGTACTGATCGATCAGCGTGCTCTCCTCCGGCGTGATCCGGTACTCCAGGTACCGGAGCCCCATGTCCCTGGACGGCCCGCGGAAGTAGCCGGCGACGAACTCCAGCCCGCCCAGCGGCACCACCTGGATCACCACGCCGCCGGTGGGGAGGAACACCATGTTCGTCAGCCCCGCGCCGTGCACGCCCACCATGGCGTCGCACGTGTTGGCGAGCTCCGCGAACGGCGCCACCTCGTGCTCGCCCTCCGACACCACCACCTCGAAC-CCGGCGCGCTCCGCGCCTCGCACGATCTCGTCGGCGTTCACGAACCGCCGCGTGCGGGCGCGCGCGATCACCAGGAGACGCGGCCGCCATGGCCGCCGCGGCTGCTGCTCGCCGGACGCCGGGAACGG-CGCGTCGCGGGGCAGGCGGTAGGTGGCGCGCATGAAGCGGGTGAAGTCCACCATGGAGTAGCCGTTGGGCGCGCGCGACGGGTCGATGCTGAAGTCGGCGTGGCATGTCAGGCCGACCTGGACGTGGCGGAAGCAGTGGACGCGGCGGTCGTCGTCG-AGGTTGATGAGGTCGTAGTTGG-AGACGGCCTTGAACACCGGCAAGAACTTGCCGAGCCACCACATC-TGGAAGTCGGACACCAG-CAGCTTCACCT-CGCCGG-AG-TACTGCCTCGCCGTCAGGAACAGCGG-CAGGATG-ACGTCGGTGTACG-CGTGGAAG-TAGTTGCCGGTGTACCCGCGGTCGGAGAACACAAGCCCGGGGACGTCGTGCCGCTCCGTGCACGCCGGC-GCCGCCGCGC-TCGCCGCCGGGGCGGGCAGCGACTGCACCGTCAGCACGCGGACGTGGCGCATGGCGTTCGGGTCGGCCTTGCGCGGGTACGGCTTGATGTGCCACGACTC-GGCGCGGAACGTGCGCTCGTCGGCGGGCCCCGGCGGCGCCACCAGGGAGACGGTGCCGTT-GGCGCCGGCG-ACGCGGACGTCGCCGTCGAGCT-CGCA-CCAGTCGATGCGGCGGTTCGACCAGAGATC-GCACAGCGGCTTCCACTCCTTCCGCCGCGGCGCCGCCTCTGAATCTTGGGAGG]

[+] EMBL CB649189             [CCCTTTTATTTTTTTTTTTTAAAAAAAAAACAAAGAGATGAATATAGTATTGCTGCTGATCTCCTCCTCTGAAATATCATACATTTGGTCGATCTGCTAGCTGCTACAGTCTACTTTTACTTACTAGTGAAAAGATAGTAAAAGAAGAAGAAAAGATTAAAAGATCAAGAAGATGGTGTACATTGATGCATCCATGGCGATCGATCGAAGAAAAATTCGAAATGGCTAGTTGTGTGTGGTGTTATTGTTGCCGCTGTTCTTGCGGAGGTGAGCAATGGCCTTCTTGAGGATTGGTCGGAACCTCTTCATGTCGAGACGAACATCCTGCTTGTCGAGGTAGGCTTCCTTGAGAGAATTCCAGCCTTTGGACTTGACGCCATCGGGGTCGGTGAAGATGGGGTGGTCTCGCGGGTACTGATCGATCAGCGTGCTCTCCTCCGGCGTGATCCGGTACTCCAGGTACCGGAGCCCCATGTCCCTGGACGGCCCGCGGAAGTAGCCGGCGACGAACTCCAGCCCGCCCAGCGGCACCACCTGGATCACCACGCCGCCGGTGGGGAGGAACACCATGTTCGTCAGCCCCGCGCCGTGCACGCCCACCATGGCGTCGCACGTGTTGGCGAGCTCCGCGAACGGCGCCACCTCGTGCTCGCCCTCCGACACCACCACCTCGAAC CCGGCGCGCTCCGCGCCTCGCACGATCTCGTCGGCGTTCACGAACCGCCGCGTGCGGGCGCGCGCGATCACCAGGAGACGCGGCCGCCAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[-] EMBL AU029486             [     TTTTTTTTTTTTTTT      AAAACAAAGAGATGAATATAGTATTGCTGCNGATCTCCTCCTCTGAAATATCATACATTTGGTCGATCTGCTAGCTGCNACAGTCTACTTTTACTTACTAGTGAAAAGATAGTTAAAGAAGAAGAAAAGATTAAAAGATCAAGAAGATGGTGTACATTGATGCATCCATGGCGATCGATCGAAGAAAAATTCGAAATGGCTAGTTGTGTGTNGTGTTATTGTTGCCGCTGTACTTGCGGAGGTGAGCCATGGCCTTCTTGAGGATTGGTCGGAACCTCTTCATGTCGAGACGAACATCCTGCNTTTCGAGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL AU063227             [                               AAAGAGATGAATATAGTATTGCTGCTGATCTCCTCCTCTGAAATATCATACATTTGGTCGATCTGCTAGCTGCTACAGTCTACTTTTACTTACTAGTGAAAAGATAGTAAAAGAAGAAGAAAAGATTAAAAGATCAAGAAGATGGTGTACATTGATGCATCCATGGCGATCGATCGAAGAAAAATTCGAAATGGCTAGTTGTGTGTGGTGTTATTGTTGCCGCTGTTCTTGCGGAGGTGAGCAATGGCCTTCTTGAGGATTGGTCGGAACCTCTTCATGTCGAGACGAACATCCTGCTTGTCGAGGTAGGCTTCCTTGAGAGAATTCCAGCCTTTGGACTTGACGCCATCGGGGTCGGTGAAGATGGGGTGGTCTCGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL AU063223             [                               AAAGAGATGAATATAGTATTGCTGCTGATCTCCTCCTCTNAAATATCATACATTTGGTCGATCTGCTAGCTGCTACAGTCTACTTTAACTTACTAGTGAAAAGATAGTAAAAGANGAAGAAAAGATTAAAAGATCAAGAAGATGGTGTACATTGATGCATCCATGGCGATCGATCGAAGAAAAATTCGAAATGGCTAGTTGTGTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL CB659210             [                                              GTATTGCTGCTGATCTCCTCCTCTGAAATATCCTACATTTGGTCGATCTGCTAGCTGCTACAGTCTACTTTTACTTACTAGTGAAAAGATAGTAAAAGAAGAAGAAAAGATTAAAAGATCAAGAAGATGGTGTACATTGATGCATCCATGGCGATCGATCGAAGAAAAATTCGAAATGGCTAGTTGTGTGTGGTGTTATTGTTGCCGCTGTTCTTGCGGAGGTGAGCAATGGCCTTCTTGAGGATTGGTCGGAACCTCTTCATGTCGAGACGAACATCCTGCTTGTCGAGGTAGGCTTCCTTGAGAGAATTCCAGCCTTTGGACTTGACGCCATCGGGGTCGGTGAAGATGGGGTGGTCTCGCGGGTACTGATCGATCAGCGTGCTCTCCTCCGGCGTGATCCGGTACTCCAGGTACCGGAGCCCCATGTCCCTGGACGGCCCGCGGAAGTAGCCGGCGACGAACTCCAGCCCGCCCAGCGGCACCACCTGGATCACCACGCCGCCGGTGGGGAGGAACACCATGTTCGTCAGCCCCGCGCCGTGCACGCCCACCATGGCGTCGCACGTGTTGGCGAGCTCCGCGAACGGCGCCACCTCGTGCTCGCCCTCCGACACCACCACCTCGAAC CCGGCGCGCTCCGCGCCTCGCACGATCTCGTCGGCGTTCACGAACCGCCGCGTGCGGGCGCGCGCGATCACCAGGAGACGCGGCCGCCATGGCCGCCGCGGCTGCTGCTCGCCGGACGCCGGGAACGG CGCGTCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL AU093292             [                                                                                                                                                                                                                                                                                                                                                                                                                                                        GCGTGATCCGGTACTCCAGGTACCGGAGCCCCATGTCCCTGGACGGCCCGCGGAAGTAGCCGGCGACGAACTCCAGCCCGCCCAGCGGCACCACCTGGATCACCACGCCGCCGGTGGGGAGGAACACCATGTTCGTCAGCCCCGCGCCGTGCACGCCCACCATGGCGTCGCACGTGTTGGCGAG TCCGCGAACGGCGCCACCTCGTGCTCGCCCTCCGACACCACCACCTCGAACTCCGG NCG TCCGCGCNTCGCACGATCTCGTCGGCGTTCACGAACCGCCGCGTGCGGGCGCGCGCGATC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[-] EMBL CB649188             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            GATCTCGTCGGCGTTCACGAACCGCCGCGTGCGGGCGCGCGCGATCACCAGGAGACGCGGCCGCCATGGCCGCCGCGGCTGCTGCTCGCCGGACGCCGGGAACGG CGCGTCGCGGGGCAGGCGGTAGGTGGCGCGCATGAAGCGGGTGAAGTCCACCATGGAGTAGCCGTTGGGCGCGCGCGACGGGTCGATGCTGAAGTCGGCGTGGCATGTCAGGCCGACCTGGACGTGGCGGAAGCAGTGGACGCGGCGGTCGTCGTCG AGGTTGATGAGGTCGTAGTTGG AGACGGCCTTGAACACCGGCAAGAACTTGCCGAGCCACCACATC TGGAAGTCGGACACCAG CAGCTTCACCT CGCCGG AG TACTGCCTCGCCGTCAGGAACAGCGG CAGGATG ACGTCGGTGTACG CGTGGAAG TAGTTGCCGGTGTACCCGCGGTCGGAGAACACAAGCCCGGGGACGTCGTGCCGCTCCGTGCACGCCGGC GCCGCCGCGC TCGCCGCCGGGGCGGGCAGCGACTGCACCGTCAGCACGCGGACGTGGCGCATGGCGTTCGGGTCGGCCTTGCGCGGGTACGGCTTGATGTGCCACGACTC GGCGCGGAACGTGCGCTCGTCGGCGGGCCCCGGCGGCGCCACCAGGGAGACGGTGCCGTT GGCGCCGGCG ACGCGGACGTCGCCGTCGAGCT CGCA CCAGTCGATGCGGCGGTTCGACCAGAGATC GCACAGCGGCTTCCACTCCTTCCG                             ]
[-] EMBL AU108935             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GCCG CGCGGCTGCTGCTCGCCGGACGCCGGGAACGGNCG NTCGCGGGGCAGGCGGTAGGTGGCGCGCATGAAGCGGGTGAAGTCCAGCATGGAGTAGCCGTTGGGCGCGCGCGACGGGTCGATGCTGAAGTCGGCGTGGCATGTCAGGCCGACCTGGACGTGGCGGAA CAGTGGACGCGGCGGTCGTCGTCG AGGTTGATGAGGTCGTAGTTGG AGACGGCCTTGAACACCGGCAAGAACTTGCCGAGCCACCACATC TGGAAGTCGGACACCAG CAGCTTCACCT CGCCGG AG TACTGCCTCGCCGTCAGGAACAGCGG CAGGATG ACGTCGGTGTACG CGTGGAAG TAGTTGCCGGTGTACCCGCGGTCGGAGAACACAAGCCCGGGGACGTCGTGCCGCTCCGTGCACNCCGGC GCCGCCGCGCTTCGCCGCCGGGGCGGGCAGCGACTGCACCGTCAGCACGCGGACGTGGCGCATGGCGTTCGG                                                                                                                                                                                                                                ]
[-] EMBL BI811564             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       CGGCTGCTGCTCGCCGGACGCCGGGAACGG CGCGTCGCGGGGCAGGCGGTAGGTGGCGCGCATGAAGCGGGTGAAGTCCACCATGGAGTAGCCGTTGGGCGCGCGCGACGGGTCGATGCTGAAGTCGGCGTGGCATGTCAGGCCGACCTGGACGTGGCGGAAGCAGTGGACGCGGCGGTCGTCGTCG AGGTTGATGAGGTCGTAGTTGG AGACGGCCTTGAACACCGGCAAGAACTTGCCGAGCCACCACATC TGGAAGTCGGACACCAG CAGCTTCACCT CGCCGG AGATACTGCCTCGCCGTCAGGAACAGCGG CAGGATG ACGTCGGTGTACG CGTGGAAG TAGTTGCCGGTGTACCCGCGGTCGGAGAACACAAGCCCGGGGACGTCGTGCCGCTCCGTGCACGCCGGCTGCCGCCGCGC TCGCCGCCGGGGCGGGCAGCGACTGCACCGTCAGCACGCGGACGTGGCGCATGGCGTTCGGGTCGG CTTGCGCGGGTACGG TTGATGTGCCACGACTCGGGCG GGAACGTGCGCTCGTCGGCGGGGGCC  CGGGGGCACCA GGAGACGGTGCCGTTGGGCGCCGGGGAAAGCGGAAGTTGCCGTTGAACTCCGCACCCAGTCGATGCGG GGTCCGACCAGAGATCTGGCCAG GGGTT CACTTCTTttc                             ]
[-] EMBL AU070953             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               GGANGCGGCGGTCGTCGTCGAAGGTTGATGAGGTCGTATTTGGAAGACGGCCTTGAACACCGGCAAGAACTTGCCGAGCCACCACATCTTGGAAGTCGGANACCAGNTAGCTTCACCTCCGCCGGTAG TACTGCCTCGCCGTCAGGAACAGCGGNTAGGATGAACGTCGGTGTACGTCGTGGAAGTTAGTTGCCGGTGTACCCGCGGTCGGAGAACACAAGCCNGGGGACGTCGTGCCGCTCCGTGCACGCCGGC GCCGCCGCGN TCGCCGCCGGGGCGGGCAGCGACTGCACCGTCAGCACGCGGACGTGGCGCATGGNGTTCGGGTCGGCNTTGCGCGGGTACGGCTTGATGTGCCACGACTC GGCGCGGNACGTGCGCTCGTCGGCGGGCCCCGGCGGCGCCACCNGGGAGACGGTGCCGTT GGCGCC GCG ACGCGGACGTCGCCGTCGAGCT CGCA CCNGTCGATGCGGCGGTTCGACCAGAGATC GCACAGCGGCTTCCACTCCTTCCGCCGCGGCGCCGCCTCTGAATCTTGGGAGG]


>consensus_13922#0 CCCTTTTATTTTTTTTTTTTAAAAAAAAAACAAAGAGATGAATATAGTATTGCTGCTGAT CTCCTCCTCTGAAATATCATACATTTGGTCGATCTGCTAGCTGCTACAGTCTACTTTTAC TTACTAGTGAAAAGATAGTAAAAGAAGAAGAAAAGATTAAAAGATCAAGAAGATGGTGTA CATTGATGCATCCATGGCGATCGATCGAAGAAAAATTCGAAATGGCTAGTTGTGTGTGGT GTTATTGTTGCCGCTGTTCTTGCGGAGGTGAGCAATGGCCTTCTTGAGGATTGGTCGGAA CCTCTTCATGTCGAGACGAACATCCTGCTTGTCGAGGTAGGCTTCCTTGAGAGAATTCCA GCCTTTGGACTTGACGCCATCGGGGTCGGTGAAGATGGGGTGGTCTCGCGGGTACTGATC GATCAGCGTGCTCTCCTCCGGCGTGATCCGGTACTCCAGGTACCGGAGCCCCATGTCCCT GGACGGCCCGCGGAAGTAGCCGGCGACGAACTCCAGCCCGCCCAGCGGCACCACCTGGAT CACCACGCCGCCGGTGGGGAGGAACACCATGTTCGTCAGCCCCGCGCCGTGCACGCCCAC CATGGCGTCGCACGTGTTGGCGAGCTCCGCGAACGGCGCCACCTCGTGCTCGCCCTCCGA CACCACCACCTCGAACCCGGCGCGCTCCGCGCCTCGCACGATCTCGTCGGCGTTCACGAA CCGCCGCGTGCGGGCGCGCGCGATCACCAGGAGACGCGGCCGCCATGGCCGCCGCGGCTG CTGCTCGCCGGACGCCGGGAACGGCGCGTCGCGGGGCAGGCGGTAGGTGGCGCGCATGAA GCGGGTGAAGTCCACCATGGAGTAGCCGTTGGGCGCGCGCGACGGGTCGATGCTGAAGTC GGCGTGGCATGTCAGGCCGACCTGGACGTGGCGGAAGCAGTGGACGCGGCGGTCGTCGTC GAGGTTGATGAGGTCGTAGTTGGAGACGGCCTTGAACACCGGCAAGAACTTGCCGAGCCA CCACATCTGGAAGTCGGACACCAGCAGCTTCACCTCGCCGGAGTACTGCCTCGCCGTCAG GAACAGCGGCAGGATGACGTCGGTGTACGCGTGGAAGTAGTTGCCGGTGTACCCGCGGTC GGAGAACACAAGCCCGGGGACGTCGTGCCGCTCCGTGCACGCCGGCGCCGCCGCGCTCGC CGCCGGGGCGGGCAGCGACTGCACCGTCAGCACGCGGACGTGGCGCATGGCGTTCGGGTC GGCCTTGCGCGGGTACGGCTTGATGTGCCACGACTCGGCGCGGAACGTGCGCTCGTCGGC GGGCCCCGGCGGCGCCACCAGGGAGACGGTGCCGTTGGCGCCGGCGACGCGGACGTCGCC GTCGAGCTCGCACCAGTCGATGCGGCGGTTCGACCAGAGATCGCACAGCGGCTTCCACTC CTTCCGCCGCGGCGCCGCCTCTGAATCTTGGGAGG



consensusID : consensus_13922#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 737
fasta sequence
                              [TCATGTAATTTATTAATAAAGTATCTTTTTTGACCGTACATAAATAATTCTATGCTGTACTATAAAAGAAAAAAAGAAGCAAAGAACAGTTGTTACATTATGAGATCTGGGGAAAAAACCATAATCTAATTAAGCCTCGTACACTTTTTTGGGTTTTGGCTACTATAGGAGTATACATGATCAACTCAACTACCACTCATGAATATAGTATTGCTGCTGATCTCCTCCTCTGAAATATCATACATTTGGTCGATCTGCTAGCTGCTACAGTCTACTTTTACTTACTAGTAAAAAGATAGTAAAAGAAGAAGAAAAGATTAAAAGATCAAGAAGATGGTGTACATTGATGCATCCATGGCGATCGATCGAAAAAAAATTCCAAATGGCTAGTTGTGTGTGGTGTTATTGTTGCCGCTGTTCTTGCGGAGGTGAGCAATGGCCTTCTTGAGGATTGGTCGGAACCTCTTCATGTCGAGACGAACATCCTGCTTGTCGAGGTAGGCTTCCTTGAAAGAATTCCAGCCTTTGGACTTGACGCCATCGGGGTCGGTGAAGATGGGGTGGTCTCGCGGGTACTGATCGATCAGCGTGCTCTCCTCCGGCGTGATCCGGTACTCCAGGTACCGGAGCCCCATGTCCCTGGACGGCCCGCGGAAGTAGCCGGCGACGAACTCCAGCCCGCCCAGCGGCACCACCTGGATCACCACGCCGCCGGTGGGGAGGAACACCATGTTCGT]

[+] EMBL CB631841             [TCATGTAATTTATTAATAAAGTATCTTTTTTGACCGTACATAAATAATTCTATGCTGTACTATAAAAGAAAAAAAGAAGCAAAGAACAGTTGTTACATTATGAGATCTGGGGAAAAAACCATAATCTAATTAAGCCTCGTACACTTTTTTGGGTTTTGGCTACTATAGGAGTATACATGATCAACTCAACTACCACTCATGAATATAGTATTGCTGCTGATCTCCTCCTCTGAAATATCATACATTTGGTCGATCTGCTAGCTGCTACAGTCTACTTTTACTTACTAGTAAAAAGATAGTAAAAGAAGAAGAAAAGATTAAAAGATCAAGAAGATGGTGTACATTGATGCATCCATGGCGATCGATCGAAAAAAAATTCCAAATGGCTAGTTGTGTGTGGTGTTATTGTTGCCGCTGTTCTTGCGGAGGTGAGCAATGGCCTTCTTGAGGATTGGTCGGAACCTCTTCATGTCGAGACGAACATCCTGCTTGTCGAGGTAGGCTTCCTTGAAAGAATTCCAGCCTTTGGACTTGACGCCATCGGGGTCGGTGAAGATGGGGTGGTCTCGCGGGTACTGATCGATCAGCGTGCTCTCCTCCGGCGTGATCCGGTACTCCAGGTACCGGAGCCCCATGTCCCTGGACGGCCCGCGGAAGTAGCCGGCGACGAACTCCAGCCCGCCCAGCGGCACCACCTGGATCACCACGCCGCCGGTGGGGAGGAACACCATGTTCGT]


>consensus_13922#1 TCATGTAATTTATTAATAAAGTATCTTTTTTGACCGTACATAAATAATTCTATGCTGTAC TATAAAAGAAAAAAAGAAGCAAAGAACAGTTGTTACATTATGAGATCTGGGGAAAAAACC ATAATCTAATTAAGCCTCGTACACTTTTTTGGGTTTTGGCTACTATAGGAGTATACATGA TCAACTCAACTACCACTCATGAATATAGTATTGCTGCTGATCTCCTCCTCTGAAATATCA TACATTTGGTCGATCTGCTAGCTGCTACAGTCTACTTTTACTTACTAGTAAAAAGATAGT AAAAGAAGAAGAAAAGATTAAAAGATCAAGAAGATGGTGTACATTGATGCATCCATGGCG ATCGATCGAAAAAAAATTCCAAATGGCTAGTTGTGTGTGGTGTTATTGTTGCCGCTGTTC TTGCGGAGGTGAGCAATGGCCTTCTTGAGGATTGGTCGGAACCTCTTCATGTCGAGACGA ACATCCTGCTTGTCGAGGTAGGCTTCCTTGAAAGAATTCCAGCCTTTGGACTTGACGCCA TCGGGGTCGGTGAAGATGGGGTGGTCTCGCGGGTACTGATCGATCAGCGTGCTCTCCTCC GGCGTGATCCGGTACTCCAGGTACCGGAGCCCCATGTCCCTGGACGGCCCGCGGAAGTAG CCGGCGACGAACTCCAGCCCGCCCAGCGGCACCACCTGGATCACCACGCCGCCGGTGGGG AGGAACACCATGTTCGT



consensusID : consensus_13922#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 436
fasta sequence
                              [CGGCTGCTGCTCGCCGGACGCCGGGAACGGCGCGTCGCGGGGCAGTGCGGTAGTGTGGCTGCGCATGAAGCGGGTGAAGTCCACCATGGAGTAGCCGTTGGGCTGCGCGCGACTGGGTCTGATGCTGAAGTCTGGCGTGGCATGTCAGGCCGACCTGGACGTGGCTGGAATGCATGTGGACTGCGGCTGTGTCGTCGTCGAGTGTTGATGAGTGTCGTAGTTGGAGACTGGCCTTGAACACCTGGCAAGAACTTGCCTGATGCCACCACATCTGGAATGTCTGGACACCAGCAGCTTCACCTCGCCTGTGAGTACTTGCCTCGCCGTCAGGAACAGCGGCAGGATGACGTCGGTGTACTGCTGTGGAAGTAGTTTGCCTGGTGTACCCGCGGTCGGAGAACACAAAGCCCTGGAGGACTGTCGTTGCCTGCTCCGT]

[-] EMBL BI805243             [CGGCTGCTGCTCGCCGGACGCCGGGAACGGCGCGTCGCGGGGCAGTGCGGTAGTGTGGCTGCGCATGAAGCGGGTGAAGTCCACCATGGAGTAGCCGTTGGGCTGCGCGCGACTGGGTCTGATGCTGAAGTCTGGCGTGGCATGTCAGGCCGACCTGGACGTGGCTGGAATGCATGTGGACTGCGGCTGTGTCGTCGTCGAGTGTTGATGAGTGTCGTAGTTGGAGACTGGCCTTGAACACCTGGCAAGAACTTGCCTGATGCCACCACATCTGGAATGTCTGGACACCAGCAGCTTCACCTCGCCTGTGAGTACTTGCCTCGCCGTCAGGAACAGCGGCAGGATGACGTCGGTGTACTGCTGTGGAAGTAGTTTGCCTGGTGTACCCGCGGTCGGAGAACACAAAGCCCTGGAGGACTGTCGTTGCCTGCTCCGT]


>consensus_13922#2 CGGCTGCTGCTCGCCGGACGCCGGGAACGGCGCGTCGCGGGGCAGTGCGGTAGTGTGGCT GCGCATGAAGCGGGTGAAGTCCACCATGGAGTAGCCGTTGGGCTGCGCGCGACTGGGTCT GATGCTGAAGTCTGGCGTGGCATGTCAGGCCGACCTGGACGTGGCTGGAATGCATGTGGA CTGCGGCTGTGTCGTCGTCGAGTGTTGATGAGTGTCGTAGTTGGAGACTGGCCTTGAACA CCTGGCAAGAACTTGCCTGATGCCACCACATCTGGAATGTCTGGACACCAGCAGCTTCAC CTCGCCTGTGAGTACTTGCCTCGCCGTCAGGAACAGCGGCAGGATGACGTCGGTGTACTG CTGTGGAAGTAGTTTGCCTGGTGTACCCGCGGTCGGAGAACACAAAGCCCTGGAGGACTG TCGTTGCCTGCTCCGT



consensusID : consensus_13922#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 295
fasta sequence
                              [GCAGGATNACGTCGTTGTACCCGTGAAAGTAGTTGCCGGTGTACCCGCGGTCGGAGAAAACAAGCCCGGGGACGTCGTGCCGCTNCGTGCAAGNCGCGCCGCCGCGCTCGCCGCCGGGNCGGGCATCGACTGCACCGTCAGCAAGCGGACGTGGCGCATNGCGTTCGGGTCGGCCTTGCGCGGGTACGGCTTNATGTGCCACGACTCGGCGCGGAACGTGCGCTCGTCGGCGGGCCCCGGCNGCGCCACCAGGGANACGGTGCCGTTTNGNGNNCCGCAAGCGGACGTCGCCGTC]

[-] EMBL OS1321824            [GCAGGATNACGTCGTTGTACCCGTGAAAGTAGTTGCCGGTGTACCCGCGGTCGGAGAAAACAAGCCCGGGGACGTCGTGCCGCTNCGTGCAAGNCGCGCCGCCGCGCTCGCCGCCGGGNCGGGCATCGACTGCACCGTCAGCAAGCGGACGTGGCGCATNGCGTTCGGGTCGGCCTTGCGCGGGTACGGCTTNATGTGCCACGACTCGGCGCGGAACGTGCGCTCGTCGGCGGGCCCCGGCNGCGCCACCAGGGANACGGTGCCGTTTNGNGNNCCGCAAGCGGACGTCGCCGTC]


>consensus_13922#3 GCAGGATNACGTCGTTGTACCCGTGAAAGTAGTTGCCGGTGTACCCGCGGTCGGAGAAAA CAAGCCCGGGGACGTCGTGCCGCTNCGTGCAAGNCGCGCCGCCGCGCTCGCCGCCGGGNC GGGCATCGACTGCACCGTCAGCAAGCGGACGTGGCGCATNGCGTTCGGGTCGGCCTTGCG CGGGTACGGCTTNATGTGCCACGACTCGGCGCGGAACGTGCGCTCGTCGGCGGGCCCCGG CNGCGCCACCAGGGANACGGTGCCGTTTNGNGNNCCGCAAGCGGACGTCGCCGTC



consensusID : consensus_13922#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 119
fasta sequence
                              [GGCGACGTCCGCTTGGNGTCNCNANACGGCACCGTTTCCNTGGTGGCGCCGCGGGNCCCGNCGACGAGCGCACGTTCCGCGCCGAGTCGTGGCACATCAAGCCGTACCCNCGCAAGGNC]

[+] EMBL AU070624             [GGCGACGTCCGCTTGGNGTCNCNANACGGCACCGTTTCCNTGGTGGCGCCGCGGGNCCCGNCGACGAGCGCACGTTCCGCGCCGAGTCGTGGCACATCAAGCCGTACCCNCGCAAGGNC]


>consensus_13922#4 GGCGACGTCCGCTTGGNGTCNCNANACGGCACCGTTTCCNTGGTGGCGCCGCGGGNCCCG NCGACGAGCGCACGTTCCGCGCCGAGTCGTGGCACATCAAGCCGTACCCNCGCAAGGNC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13922#0      CCCTTTTATTTTTTTTTTTTAAAAAAAAAACAAAGAGATGAATATAGTATTGCTGCTGAT 60
consensus_13922#2      ------------------------------------------------------------
consensus_13922#3      ------------------------------------------------------------
consensus_13922#1      ------------------------------------------------------------
consensus_13922#4      ------------------------------------------------------------
                                                                                   

consensus_13922#0      CTCCTCCTCTGAAATATCATACATTTGGTCGATCTGCTAGCTGCTACAGTCTACTTTTAC 120
consensus_13922#2      ------------------------------------------------------------
consensus_13922#3      ------------------------------------------------------------
consensus_13922#1      ------------------------------------------------------------
consensus_13922#4      ------------------------------------------------------------
                                                                                   

consensus_13922#0      TTACTAGTGAAAAGATAGTAAAAGAAGAAGAAAAGATTAAAAGATCAAGAAGATGGTGTA 180
consensus_13922#2      ------------------------------------------------------------
consensus_13922#3      ------------------------------------------------------------
consensus_13922#1      ------------------------------------------------------------
consensus_13922#4      ------------------------------------------------------------
                                                                                   

consensus_13922#0      CATTGATGCATCCATGGCGATCGATCGAAGAAAAATTCGAAATGGCTAGTTGTGTGTGGT 240
consensus_13922#2      ------------------------------------------------------------
consensus_13922#3      ------------------------------------------------------------
consensus_13922#1      ------------------------------------------------------------
consensus_13922#4      ------------------------------------------------------------
                                                                                   

consensus_13922#0      GTTATTGTTGCCGCTGTTCTTGCGGAGGTGAGCAATGGCCTTCTTGAGGATTGGTCGGAA 300
consensus_13922#2      ------------------------------------------------------------
consensus_13922#3      ------------------------------------------------------------
consensus_13922#1      ------------------------------------------------------------
consensus_13922#4      ------------------------------------------------------------
                                                                                   

consensus_13922#0      CCTCTTCATGTCGAGACGAACATCCTGCTTGTCGAGGTAGGCTTCCTTGAGAGAATTCCA 360
consensus_13922#2      ------------------------------------------------------------
consensus_13922#3      ------------------------------------------------------------
consensus_13922#1      ------------------------------------------------------------
consensus_13922#4      ------------------------------------------------------------
                                                                                   

consensus_13922#0      GCCTTTGGACTTGACGCCATCGGGGTCGGTGAAGATGGGGTGGTCTCGCGGGTACTGATC 420
consensus_13922#2      ------------------------------------------------------------
consensus_13922#3      ------------------------------------------------------------
consensus_13922#1      -----------------------------------------------------------T 1
consensus_13922#4      ------------------------------------------------------------
                                                                                   

consensus_13922#0      GATCAGCGTGCTCTCCTCCGGCGTGATCCGGTACTCCAGGTACCGGAGCCCCATGTCCCT 480
consensus_13922#2      ------------------------------------------------------------
consensus_13922#3      ------------------------------------------------------------
consensus_13922#1      CATGTAATTTATTAATAAAGTATCTTTTTTGACCGTACATAAATAATTCTATGCTGTACT 61
consensus_13922#4      ------------------------------------------------------------
                                                                                   

consensus_13922#0      GGACGGCCCGCGGAAGTAGCCGGCGACGAACTCCAGCCCGCCCAGCGGCACCACCTGGAT 540
consensus_13922#2      ------------------------------------------------------------
consensus_13922#3      ------------------------------------------------------------
consensus_13922#1      ATAAAAGAAAAAAAGAAGCAAAGAACAGTTGTTACATTATGAGATCTGGGGAAAAAACCA 121
consensus_13922#4      ------------------------------------------------------------
                                                                                   

consensus_13922#0      CACCACGCCGCCGGTGGGGAGGAACACCATGTTCGTCAGCCCCGCGCCGTGCACGCCCAC 600
consensus_13922#2      ------------------------------------------------------------
consensus_13922#3      ------------------------------------------------------------
consensus_13922#1      TAATCTAATTAAGCCTCGTACACTTTTTTGGGTTTTGGCTACTATAGGAGTATACATGAT 181
consensus_13922#4      ------------------------------------------------------------
                                                                                   

consensus_13922#0      CATGGCGTCGCACGTGTTGGCGAGCTCCGCGAACGGCGCCACCTCGTGCTCGCCCTCCGA 660
consensus_13922#2      ------------------------------------------------------------
consensus_13922#3      ------------------------------------------------------------
consensus_13922#1      CAACTCAACTACCACTCATGAATATAGTATTGCTGCTGATCTCCTCCTCTGAAATATCAT 241
consensus_13922#4      ------------------------------------------------------------
                                                                                   

consensus_13922#0      CACCACCACCTCGAACCCGGCGCGCTCCGCGCCTCGCACGATCTCGTCGGCGTTCACGAA 720
consensus_13922#2      ------------------------------------------------------------
consensus_13922#3      ------------------------------------------------------------
consensus_13922#1      ACATTTGGTCGATCTGCTAGCTGCTACAGTCTACTTTTACTTACTAGTAAAAAGATAGTA 301
consensus_13922#4      ------------------------------------------------------------
                                                                                   

consensus_13922#0      CCGCCGCGTGCGGGCGCGCGCGATCACCAGGAGACGCGGCCGCCATGGCCGCCGCGGCTG 780
consensus_13922#2      ------------------------------------------------------CGGCTG 6
consensus_13922#3      ------------------------------------------------------------
consensus_13922#1      AAAGAAGAAGAAAAGATTAAAAGATCAAGAAGATGGTGTACATTGATGCATCCATGGCGA 361
consensus_13922#4      ------------------------------------------------------------
                                                                                   

consensus_13922#0      CTGCTCGCCGGACGCCGGGAACGGCGCGTCGCGGGGCAG-GCGGTAG-GTGGC-GCGCAT 837
consensus_13922#2      CTGCTCGCCGGACGCCGGGAACGGCGCGTCGCGGGGCAGTGCGGTAGTGTGGCTGCGCAT 66
consensus_13922#3      -----------------------------------GCAG---GATNACGTCGTTGTACCC 22
consensus_13922#1      TCGATCGAAAAAAAATTCCAAATGGCTAGTTGTGTGTGG--TGTTATTGTTGCCGCTGTT 419
consensus_13922#4      ------------------------------------------------------------
                                                                                   

consensus_13922#0      GAAGCGGGTGAAGTCCACCATGGAGTAGCCGTTGGGC-GCGCGCGAC-GGGTC-GATGCT 894
consensus_13922#2      GAAGCGGGTGAAGTCCACCATGGAGTAGCCGTTGGGCTGCGCGCGACTGGGTCTGATGCT 126
consensus_13922#3      G---TGAAAGTAGTTGCCGGTGTACCCGCGGTCGGAGAAAACAAGCCCGGG---GACGTC 76
consensus_13922#1      CTTGCGGAGGTGAGCAATGGCCTTCTTGAGGATTGGTCGGAACCTCTTCATGTCGAGACG 479
consensus_13922#4      ------------------------------------------------------------
                                                                                   

consensus_13922#0      GAAGTC-GGCGTGGCATGTCAGGCCGACCTGGACGTGGCGGAAGCA---GTGGAC-GCGG 949
consensus_13922#2      GAAGTCTGGCGTGGCATGTCAGGCCGACCTGGACGTGGCTGGAATGCATGTGGACTGCGG 186
consensus_13922#3      GTGCCGCTNCGTG-CAAGNCGCGCCGCCGCGCTCGCCGCCGGGNCG------GGCATCGA 129
consensus_13922#1      AACATCCTGCTTGTCGAGGTAGGCTTCCTTGAAAGAATTCCAGCCTT-TGGACTTGACGC 538
consensus_13922#4      ------------------------------------------------------------
                                                                                   

consensus_13922#0      CGGT--CGTCGTCGAG-GTTGATGAG-GTCGTAGTTGGAGAC-GGCCTTGAACACC-GGC 1003
consensus_13922#2      CTGTGTCGTCGTCGAGTGTTGATGAGTGTCGTAGTTGGAGACTGGCCTTGAACACCTGGC 246
consensus_13922#3      CTGCACCGTCAGCAAGCGGACGTGGCGCATNGCGTTCGGGTC-GGCCTTGCGCG---GGT 185
consensus_13922#1      CATCGGGGTCGGTGAAGATGGGGTGGTCTCGCGGGTACTGATCGATCAGCGTGCTCTCCT 598
consensus_13922#4      ------------------------------------------------------------
                                                                                   

consensus_13922#0      AAGAACTTGCCGA--GCCACCACATCTGGAA-GTC-GGACACCAGCAGCTTC--ACC--T 1055
consensus_13922#2      AAGAACTTGCCTGATGCCACCACATCTGGAATGTCTGGACACCAGCAGCTTC--ACC--T 302
consensus_13922#3      ACGGCTTNATGTGCCACGACTCGGCGCGGAACGTGCGCTCGTCGGCGGGCCCCGGCN--G 243
consensus_13922#1      CCGGCGTGATCCGGTACTCCAGGTACCGGAGCCCCATGTCCCTGGACGGCCCGCGGAAGT 658
consensus_13922#4      --GGCGACGTCCGCTTGGNGTCNCNANACGGCACCGTTTCCNTGGTGGCGCCGCGGG--- 55
                         *                                    *    *  *   *        

consensus_13922#0      CGCCGG--AGTACT-GCCTCGCCGTCAGGAACAGCGGCAGGATGACGTCGGTGTACG--C 1110
consensus_13922#2      CGCCTGTGAGTACTTGCCTCGCCGTCAGGAACAGCGGCAGGATGACGTCGGTGTACTGCT 362
consensus_13922#3      CGCCACCAGGGAN--ACGGTGCCGTTTNGNGNNCCG-CAAGCGGACGTCGCCGTC----- 295
consensus_13922#1      AGCCGGCGACGAACTCCAGCCCGCCCAGCGGCACCACCTGGATCACCACGCCGCCGGTGG 718
consensus_13922#4      NCCCGNCGACGAGC----GCACGTTCCGCGCCGAGTCGTGGCACATCAAGCCGTACCCNC 111
                         **       *         *                  *   *    *  *       

consensus_13922#0      GTGGAAGTAGTTG--CCGGTGTACCCGCGGTCGGAGAACACAAGCCCGGGGACGTCGTGC 1168
consensus_13922#2      GTGGAAGTAGTTTGCCTGGTGTACCCGCGGTCGGAGAACACAAAGCCCTGGAGGAC-TGT 421
consensus_13922#3      ------------------------------------------------------------
consensus_13922#1      GGAGGAACACCATGTTCGT----------------------------------------- 737
consensus_13922#4      GCAAGGNC---------------------------------------------------- 119
                                                                                   

consensus_13922#0      CGCTCCGTGCACGCCGGCGCCGCCGCGCTCGCCGCCGGGGCGGGCAGCGACTGCACCGTC 1228
consensus_13922#2      CGTTGCCTGCTCCGT--------------------------------------------- 436
consensus_13922#3      ------------------------------------------------------------
consensus_13922#1      ------------------------------------------------------------
consensus_13922#4      ------------------------------------------------------------
                                                                                   

consensus_13922#0      AGCACGCGGACGTGGCGCATGGCGTTCGGGTCGGCCTTGCGCGGGTACGGCTTGATGTGC 1288
consensus_13922#2      ------------------------------------------------------------
consensus_13922#3      ------------------------------------------------------------
consensus_13922#1      ------------------------------------------------------------
consensus_13922#4      ------------------------------------------------------------
                                                                                   

consensus_13922#0      CACGACTCGGCGCGGAACGTGCGCTCGTCGGCGGGCCCCGGCGGCGCCACCAGGGAGACG 1348
consensus_13922#2      ------------------------------------------------------------
consensus_13922#3      ------------------------------------------------------------
consensus_13922#1      ------------------------------------------------------------
consensus_13922#4      ------------------------------------------------------------
                                                                                   

consensus_13922#0      GTGCCGTTGGCGCCGGCGACGCGGACGTCGCCGTCGAGCTCGCACCAGTCGATGCGGCGG 1408
consensus_13922#2      ------------------------------------------------------------
consensus_13922#3      ------------------------------------------------------------
consensus_13922#1      ------------------------------------------------------------
consensus_13922#4      ------------------------------------------------------------
                                                                                   

consensus_13922#0      TTCGACCAGAGATCGCACAGCGGCTTCCACTCCTTCCGCCGCGGCGCCGCCTCTGAATCT 1468
consensus_13922#2      ------------------------------------------------------------
consensus_13922#3      ------------------------------------------------------------
consensus_13922#1      ------------------------------------------------------------
consensus_13922#4      ------------------------------------------------------------
                                                                                   

consensus_13922#0      TGGGAGG 1475
consensus_13922#2      -------
consensus_13922#3      -------
consensus_13922#1      -------
consensus_13922#4      -------
                              




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)