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Oryza sativa
cluster # 13923 cluster # 13923       Sequences # 14       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_13923#0 length = 907 sequences # 9  
consensus_13923#1 length = 877 sequences # 3  
consensus_13923#2 length = 288 sequences # 1  
consensus_13923#3 length = 257 sequences # 1  

consensusID : consensus_13923#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 9
consensus length = 907
fasta sequence
                              [AAAATTAAAAAGAAGTGGTTGGTGACAGCAACTCGCCTCCTTCCTCCTCACTCCTCTCCTACTTCTTGCCTGCCTCGCACCTCACTCTTCTTCCTCCCCGGCCGAGGCAACAGTAACACCGCTGCAGCAGCGAGGAATTGTGTCGGCGAGAATGGATTCCAGGATCTCCCTCGTCTGCTTCCTCGTCCTCGCTTCCTCCTTGCTGCATTGCGCCAGATCTGATGGAAGTGATTCACAGCTTCTCAAGGGCATCAACAGCTACAGAGCTTCCC-TCAAAGTCCCTGCGCTATCCGAGAACAAGAATGCTGCC-TGCTTGGCTGAGCAGCT-AGCACAGCAATTC-AAAGACCAACC-TTGCACCAACACCACC-GGAGCAAACACTGTCCCTGGCACCGAG-CAGCAGTTCCCCGACTACCCAAAGTACCTCGACCATTGCCATCTCAACGCGTCGGTGACCGGAGACGGTCAGGTGATGCCGGCCTGCGTTCCCGGACTTGTACCTGATGTGGTTCTGACCAACTACACCAAGTCACAGTACAACCAGTATCTGAATGACACCAAGTTCTCTGGTGTTGGGATCGCGAATGAGGGAGATTGGGTGGTCGTTGTCCTCAGCACGAGCTCGGGTTCAGGTGATTACTCCCCTGCTCCCCCTGGCTCCAACTGGGCTCCTTCAGTTCATCCCTTCAATCAAC--TGATTCTTTTGTTGGTAGGCATTGTATGTTTGCTGATGATTTGAGAGATTTGATCATACTGCAGAGAGTGTACCTTACTTTTGATGTAATCCTTTTTTGGATCGT-CCATATTTGAATTGAACTTTGTCTCATTGACAAAAAAAAAGTTTTTGCTATGAAGATTTGGATCCGAACGTTNNNNNNNAANNNNNNNNNNNNNNNNNNNNNNNNNNTTN]

[+] EMBL C73651               [AAAATTAAAAAGAAGTGGTTGGTGACAGCAACTCGCCTCCTTCCTCCTCACTCCTCTCCTACTTCTTGCCTGCCTCGCACCTCACTCTTCTTCCTCCCCGGCCGAGGCAACAGTAACACCGCTGCAGCAGCGAGGAATTGTGTCGGCGAGAATGGATTCCAGGATCTCCCTCGTCTGCTTCCTCGTCCTCGCTTCCTCCTTGCTGCATTGCGCCAGATCTGATGGAAGTGATTCACAGCTTCTCAAGGGCATCAACAGCTACAGAGCTTCCC TCAAAGTCCCTGGGCTATCCGAGAANAAGAATGCTGCC TGCTTGGCTGAGCAGCTAAGCACAGCAATTN AAAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL BE039922             [                                                                   GCCTGCCTCGCACCTCACTCTTCTTCCTCCCCGGCCGAGGCAACAGTAACACCGCTGCAGCAGCGAGGAATTGTGTCGGCGAGAATGGATTCCAGGATCTCCCTCGTCTGCTTCCTCGTCCTCGCTTCCTCCTTGCTGCATTGCGCCAGATCTGATGGAAGTGATTCACAGCTTCTTAAGGGCATCAACAGCTACAGAGCTTCCC TCAAAGTCCCTGCGCTATCCGAGAACAAGAATGCTGCC TGCTTGGCTGAGCAGCT AGCACAGCAATTC AAAGACCAACC TTGCACCAACACCACC GGAGCAAACACTGTCCCTGGCACCGAG CAGCAGTTCCCCGACTACCCAAAGTACCTCGACCATTGCCATCTCAACGCGTCGGTGACCGGAGACGGTCAGGTGATGCCGGCCTGCGTTCCCGGACTTGTACCTGATGTGGTTCTGACCAACTACACCAAGTCACAGTACAACCAGTATCTGAATGACACCAAGTTCTCTGGTGTTGGGATCGCGAATGAGGGAGATTGGGTGGTCGTGGTCCTCAGCACGAGCTCGGGTTCAGGTGATTACTCCCCTGCTCCCCCTGGCTCCAACTGGGCTCCTTCAGTTCATCCCTTCAACCAACNNTGA TC TTTG TGGTAGGCATTGTATGTTTGCTGATGAATTGAGAGAATTGATCATACTGCAGAGAGTGTACCTTACTTTTGATGTAATCCCTTTTTGGATCGTCCCATA TTGAAATGAACTTTGTTTCATTGACAACTTGCTAGTTTTTGCTATGAAGATTTGGATCCGAACGTTNNNNNNNAANNNNNNNNNNNNNNNNNNNNNNNNNNTTN]
[+] EMBL CF281804             [                                                                                    gagtagaaaCTCCTTGGCCGAGGCAACAGTAACACCGCTGCAGCAGCGAGGAATTGTGTCGGCGAGAATGGATTCCAGGATCTCCCTCGTCTGCTTCCTCGTCCTCGCTTCCTCCTTGCTGCATTGCGCCAGATCTGATGGAAGTGATTCACAGCTTCTCAAGGGCATCAACAGCTACAGAGCTTCCC TCAAAGTCCCTGCGCTATCCGAGAACAAGAATGCTGCC TGCTTGGCTGAGCAGCT AGCACAGCAATTC AAAGACCAACC TTGCACCAACACCACC GGAGCAAACACTGTCCCTGGCACCGAG CAGCAGTTCCCCGACTACCCAAAGTACCTCGACCATTGCCATCTCAACGCGTCGGTGACCGGAGACGGTCAGGTGATGCCGGCCTGCGTTCCCGGACTTGTACCTGATGTGGTTCTGACCAACTACACCAAGTCACAGTACAACCAGTATCTGAATGACACCAAGTTCTCTGGTGTTGGGATCGCGAATGAGGGAGATTGGGTGGTCGTTGTCCTCAGCACGAGCTCGGGTTCAGGTGATTACTCCCCTGCTCCCC                                                                                                                                                                                                                                                                    ]
[+] EMBL CF305501             [                                                                                                  CGGCCGAGGCAACAGTAACACCGCTGCAGCAGCGAGGAATTGTGTCGGCGAGAATGGATTCCAGGATCTCCCTCGTCTGCTTCCTCGTCCTCGCTTCCTCCTTGCTGCATTGCGCCAGATCTGATGGAAGTGATTCACAGCTTCTCAAGGGCATCAACAGCTACAGAGCTTCCC TCAAAGTCCCTGCGCTATCCGAGAACAAGAATGCTGCC TGCTTGGCTGAGCAGCT AGCACAGCAATTC AAAGACCAACC TTGCACCAACACCACC GGAGCAAACACTGTCCCTGGCACCGAG CAGCAGTTCCCCGACTACCCAAAGTACCTCGACCATTGCCATCTCAACGCGTCGGTGACCGGAGACGGTCAGGTGATGCCGGCCTGCGTTCCCGGACTTGTACCTGATGTGGTTCTGACCAACTACACCAAGTCACAGTACAACCAGTATCTGAATGACACCAAGTTCTCTGGTGTTGGGA                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL C73561               [                                                                                                      CGAGGCAACAGTNACACTGCTGCAGCAGCGAGGAATTGTGTCGGCGAGAATGGATTCCAGGATCTCCCTCGTCTGCTTCCTCGTCCTCGCTTCCTCCTTGCTGCATTGCGCCAGATCTGATGGAAGTGATTTACAGCTTCTCAAGGGCATCAACAGCTACAGAGCTTCCC TCAAAGTCCCTGCGCTATCCGAGAACAAGAATGCTGCCTTGCTTGGCTGAGCAGCT AGCACAGCAATTCAAAAGACCAACCTTTGCACCAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL OSR25641A            [                                                                                                                       CGCTGCAGCAGCGAGGAATTGTGTCGGCGAGAATGGATTCCAGGATCTCCCTCGTCTGCTTCCTCGTCCTCGCTTCCTCCTTGCTGCATTGCGCCAGATCTGATGGAAGTGATTCACAGCTTCTCAAGGGCATCAACAGCTACAGAGCTTCCC TCAAAGTCCCTGCGCTATCCGAGAACAAGAATGCTGCC TGCTTGGCTGAGCAGCT AGCACAGCAATTC AAAGACCAACC TTGCACCAACACCACC GGAGCAAACACTGTCCCTGGCACCGAG CAGCAGTTCCCCGACTACCCAAAGTACCTCGn                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL AU095472             [                                                                                                                                                                                                                                                   aAAGGGCATCAACAGCTACAGAGCTTCCCTTCAAAGT CCTGCGCTATCCGAGAACAAGAATGCTGCC TGCTTGGCTGAGCAGCT AGCACAGCAATTCGAAAGACCAACC TTGCACCAACACCACCGGGAGCAAACACTGTCCCTGGCACCGAGTCAGCAGTTCCCCGACTACCCAAAGTACCTCGACCATTGCCATCTCAACGCGTCGGTGACCGGAGACGGTCAGGTGATGCCGGCCTGCGTTCCCGGACTTGTACCTGATGTGGTTCTGACCAACTACACCAAGTCACAGTACAACCAGTATCTGAATGACACCAAGTTCTCTGGTGTTGGGATCGCGAATGAGGGAGATTGGGTGGTCGTTGTCCTCAGCACGAGCTCGGGTTCAGGTGATTACTCCCCTGCTCCCCCTGGCTCCAACTGGGCTCCTTCAGTTCATCCCTTCAATCAAC  TGATTCTTTTGTTGGTAGGCATTGTATGTTTGCTGATGATTTGAGAGATTTGATCATACTGCAGAGAGTGTACCTTACTTTTGATGTAATCCTTTTTTGGATCGT CCATATTTGAATTGAACTTTGTCTCATTGACAAAA                                                                           ]
[-] EMBL CF281803             [                                                                                                                                                                                                                                                                                                                                                                                                  TCCCTGGCACCGAG CAGCAGTTCCCCGACTACCCAAAGTACCTCGACCATTGCCATCTCAACGCGTCGGTGACCGGAGACGGTCAGGTGATGCCGGCCTGCGTTCCCGGACTTGTACCTGATGTGGTTCTGACCAACTACACCAAGTCACAGTACAACCAGTATTTGAATGACACCAAGTTCTCTGGTGTTGGGATCGCGAATGAGGGAGATTGGGTGGTCGTTGTCCTCAGCACGAGCTCGGGTTCAGGTGATTACTCCCCTGCTCCCCCTGGCTCCAACTGGGCTCCTTCAGTTCATCCCTTCAATCAAC  TGATTCTTTTGTTGGTAGGCATTGTATGTTTGCTGATGATTTGAGAGATTTGATCATACTGCAGAGAGTGTACCTTACTTTTGATGTAATCCTTTTTTGGATCGT CCATATTTGAATTGAACTTTGTCTCATTGACAAAAAAAAA                                                                      ]
[+] EMBL AU166045             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              GAGGGAGATTGGGTGGTCGTTGTCCTCAGCACGAGCTCGGGTTCAGGTGATTACTCCCCTGCTCCCCCTGGCTCCAACTGGGCTCCTTCAGTTCATCCCTTCAATCAAC  TGATTCTTTTGTTGGTAGGCATTGTATGTTTGCTGATGATTTGAGAGATTTGATCATACTGCAGAGAGTGTACCTTACTTTTGATGTAATCCTTTTTTGGATCGT CCATATTTGAATTGAACTTTGTCTCATTGACAAAAAAAAAaaa                                                                   ]


>consensus_13923#0 AAAATTAAAAAGAAGTGGTTGGTGACAGCAACTCGCCTCCTTCCTCCTCACTCCTCTCCT ACTTCTTGCCTGCCTCGCACCTCACTCTTCTTCCTCCCCGGCCGAGGCAACAGTAACACC GCTGCAGCAGCGAGGAATTGTGTCGGCGAGAATGGATTCCAGGATCTCCCTCGTCTGCTT CCTCGTCCTCGCTTCCTCCTTGCTGCATTGCGCCAGATCTGATGGAAGTGATTCACAGCT TCTCAAGGGCATCAACAGCTACAGAGCTTCCCTCAAAGTCCCTGCGCTATCCGAGAACAA GAATGCTGCCTGCTTGGCTGAGCAGCTAGCACAGCAATTCAAAGACCAACCTTGCACCAA CACCACCGGAGCAAACACTGTCCCTGGCACCGAGCAGCAGTTCCCCGACTACCCAAAGTA CCTCGACCATTGCCATCTCAACGCGTCGGTGACCGGAGACGGTCAGGTGATGCCGGCCTG CGTTCCCGGACTTGTACCTGATGTGGTTCTGACCAACTACACCAAGTCACAGTACAACCA GTATCTGAATGACACCAAGTTCTCTGGTGTTGGGATCGCGAATGAGGGAGATTGGGTGGT CGTTGTCCTCAGCACGAGCTCGGGTTCAGGTGATTACTCCCCTGCTCCCCCTGGCTCCAA CTGGGCTCCTTCAGTTCATCCCTTCAATCAACTGATTCTTTTGTTGGTAGGCATTGTATG TTTGCTGATGATTTGAGAGATTTGATCATACTGCAGAGAGTGTACCTTACTTTTGATGTA ATCCTTTTTTGGATCGTCCATATTTGAATTGAACTTTGTCTCATTGACAAAAAAAAAGTT TTTGCTATGAAGATTTGGATCCGAACGTTNNNNNNNAANNNNNNNNNNNNNNNNNNNNNN NNNNTTN



consensusID : consensus_13923#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 877
fasta sequence
                              [GCCTGCCTCGCACCTCACTCTTCTTCCTCCCCGGCCGAGGCAACAGTAACACCGCTGCAGCAGCGAGGAATTGTGTCGGCGAGAATGGATTCCAGGATCTCCCTCGTCTGCTTCCTCGTCCTCGCTTCCTCCTTGCTGCATTGCGCCAGATCTGATGGAAGTGATTCACAGCTTCTTAAGGGCATCAACAGCTACAGAGCTTCCCTCAAAGTCCCTGCGCTATCCGAGAACAAGAATGCTGCCTGCTTGGCTGAGCAGCTAGCACAGCAATTCAAAGACCAACCTTGCACCAACACCACCGGAGCAAACACTGTCCCTGGCACCGAGCAGCAGTTCCCCGACTACCCA-AAGTACCTCGACCATTGCCATCTCAACGCGTCGGTGACCGGAGACGGTCAGGTGATGCCGGCCTGCGTTCCCGGACTTGTACCTGATGTGGTTCTGACCAACTACACCAAGTCACAGTACAACC-AGTATCTGAATGACACCAAGTTCTCTGGTGTTGGGATCGCGAATGAGGGAGATTGGGTGGTCGTGGTCCTCAGCACGAGCTCGGGTTCAGGTGATTACTCCCCTGCTCCCCCTGGCTCCAACTGGGCTCCTTCAGTTCATCCCTTCAACCAACTGATTCTTTTGTTGGTAGGCATTGTATGTTTGCTGATGATTTGAGAGATTTGATCATACTGCAGAGAGTGTACCTTACTTTTGATGTAATCCTTTTTTGGATCGTCCATATTTGAATTGAACTTTGTCTCATTGACAACTTGCTAGTATTTGCTATGAGGATATGGATCGGAACGTATTCTTTTGACTGTTTTTTCTTAAACCTTTGACTACAATATATAATGGTCCTTACCCATGTGTTCAAAAGAAAAAA]

[+] EMBL CA757041             [GCCTGCCTCGCACCTCACTCTTCTTCCTCCCCGGCCGAGGCAACAGTAACACCGCTGCAGCAGCGAGGAATTGTGTCGGCGAGAATGGATTCCAGGATCTCCCTCGTCTGCTTCCTCGTCCTCGCTTCCTCCTTGCTGCATTGCGCCAGATCTGATGGAAGTGATTCACAGCTTCTTAAGGGCATCAACAGCTACAGAGCTTCCCTCAAAGTCCCTGCGCTATCCGAGAACAAGAATGCTGCCTGCTTGGCTGAGCAGCTAGCACAGCAATTCAAAGACCAACCTTGCACCAACACCACCGGAGCAAACACTGTCCCTGGCACCGAGCAGCAGTTCCCCGACTACCCA AAGTACCTCGACCATTGCCATCTCAACGCGTCGGTGACCGGAGACGGTCAGGTGATGCCGGCCTGCGTTCCCGGACTTGTACCTGATGTGGTTCTGACCAACTACACCAAGTCACAGTACAACC AGTATCTGAATGACACCAAGTTCTCTGGTGTTGGGATCGCGAATGAGGGAGATTGGGTGGTCGTGGTCCTCAGCACGAGCTCGGGTTCAGGTGATTACTCCCCTGCTCCCCCTGGCTCCAACTGGGCTCCTTCAGTTCATCCCTTCAACCAACTGATTCTTTTGTTGGTAGGCATTGTATGTTTGCTGATGATTTGAGAGATTTGATCATACTGCAGAGAGTGTACCTTACTTTTGATGTAATCCTTTTTTTGATCGTCCATATTTGAATTGAACTTTGTCTCATTGACAACTTGCTAGTTTTTGCTATGAAGATATGGATCGGAACGTATTCTTTTGACTGTTTTTTCTTAAAaaaa                                               ]
[+] EMBL BI802078             [                                                                                                                                                                                                                                                                                               CACCAACACCCCCGGACCAAACACTGT CCTGGCACCGA CA CAGTTCCCCGACTACCCATAAGTACCTCGACCATT CCATCTCAACGCGTCGGTGACCGGAGACGGTCAGGTGATGCCGGCCTGCGTTCCCGGACTTGTACCTGATGTGGTTCTGACCAACTACACCAAGTCACAGTACAACCAAGTATCTGAATGACACCAAGTTCTCT GT TTGGGATCGCGAATGAGGGAGATTGGGTGTTCGTGGTCCTCAGCACGAGCTCGGGTTCAGGTGATTACTCCCCTGCTCCCCCTGGCTCCAACTGGGCTCCTTCAGTTCATCCCTTCAACC ACTGATTCTTTTGTTGGTAGGCATTGTATGTTTGCTGATGATTTGAGAGATTTGATCATACTGCAGAGAGTGTACCTTACTTTTGATGTAATCCTTTTTTGGATCGTCCATATTTGAATTGAACTTTGTCTCATTGACAACTTGCTAGTATTTGCTATGAGGATATGGATCGGAACGTATTCTTTTGACTGTTTTTTCTTAAACCTTTGACTACAATATATAATGGTCCTTACCCATGTGTTCAAAAGAAAAAA]
[+] EMBL AU163784             [                                                                                                                                                                                                                                                                                                                                                       ACCCA AAGTNCCTCGACCATTGCCANCTCAACGCGTCGGTGACCGGAGACGGTCAGGTGATGCCGGCCTGCGTTCCCGGACTTGTACCTGATGTGGTTCTGACCAACTACACCAAGTCACAGTACAACC AGTATCTGAATGACACCAAGTTCTCTGGTGTTGGGATCGCGAATGAGGGAGATTGGGTGGTCGTTGCCCTCAGCACGAGCTCGGGTTCAGGTGATTACTCCCCTGCTCCCCCTGGCTCCAACTGGGCTCCTTCAGTTCATCCCTTCAATCAACTGATTCTTTTGTTGGTAGGCATTGTATGTTTGCTGATGATTTGAGAGATTTGATCATACTGCAGAGAGTGTACCTTACTTTTGATGTAATCCTTTTTTGGATCGTCCATATTTGAATTGAACTTTGTCTCATTGACAACTTGCTAGTATTTGCTACGAGGATATGGATCGGAACGTATTCTTTTGACTGTTTTTTCTTAAACCTTTGACTACAATATATAATGGTCCTTACGCAaaaaa             ]


>consensus_13923#1 GCCTGCCTCGCACCTCACTCTTCTTCCTCCCCGGCCGAGGCAACAGTAACACCGCTGCAG CAGCGAGGAATTGTGTCGGCGAGAATGGATTCCAGGATCTCCCTCGTCTGCTTCCTCGTC CTCGCTTCCTCCTTGCTGCATTGCGCCAGATCTGATGGAAGTGATTCACAGCTTCTTAAG GGCATCAACAGCTACAGAGCTTCCCTCAAAGTCCCTGCGCTATCCGAGAACAAGAATGCT GCCTGCTTGGCTGAGCAGCTAGCACAGCAATTCAAAGACCAACCTTGCACCAACACCACC GGAGCAAACACTGTCCCTGGCACCGAGCAGCAGTTCCCCGACTACCCAAAGTACCTCGAC CATTGCCATCTCAACGCGTCGGTGACCGGAGACGGTCAGGTGATGCCGGCCTGCGTTCCC GGACTTGTACCTGATGTGGTTCTGACCAACTACACCAAGTCACAGTACAACCAGTATCTG AATGACACCAAGTTCTCTGGTGTTGGGATCGCGAATGAGGGAGATTGGGTGGTCGTGGTC CTCAGCACGAGCTCGGGTTCAGGTGATTACTCCCCTGCTCCCCCTGGCTCCAACTGGGCT CCTTCAGTTCATCCCTTCAACCAACTGATTCTTTTGTTGGTAGGCATTGTATGTTTGCTG ATGATTTGAGAGATTTGATCATACTGCAGAGAGTGTACCTTACTTTTGATGTAATCCTTT TTTGGATCGTCCATATTTGAATTGAACTTTGTCTCATTGACAACTTGCTAGTATTTGCTA TGAGGATATGGATCGGAACGTATTCTTTTGACTGTTTTTTCTTAAACCTTTGACTACAAT ATATAATGGTCCTTACCCATGTGTTCAAAAGAAAAAA



consensusID : consensus_13923#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 288
fasta sequence
                              [CTGGTGTTGGGATCGCGAATAAGGGANATTGGGTGGTCGTTGTCCTCAGCACGAGCTCGGGTTCAGGTGATTACTCCCCTGCTCCCCCTGGCTCCAACTGGGCTCCTTCAGTTCATCCCTTCAATCAACTGATTNTTTTGTTGGTAGGCATTGTATGTTTGCTGATGATTTGANANATTTGATCATACTGCAAANAGTGTACCTTACTTTTGATGTAATCCTTTTTTGGATCGGTCCATATTTGAATTGAACTTTGTNTCATTGNCCAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU174132             [CTGGTGTTGGGATCGCGAATAAGGGANATTGGGTGGTCGTTGTCCTCAGCACGAGCTCGGGTTCAGGTGATTACTCCCCTGCTCCCCCTGGCTCCAACTGGGCTCCTTCAGTTCATCCCTTCAATCAACTGATTNTTTTGTTGGTAGGCATTGTATGTTTGCTGATGATTTGANANATTTGATCATACTGCAAANAGTGTACCTTACTTTTGATGTAATCCTTTTTTGGATCGGTCCATATTTGAATTGAACTTTGTNTCATTGNCCAAAAAAAAAAAAAAAAAAAAA]


>consensus_13923#2 CTGGTGTTGGGATCGCGAATAAGGGANATTGGGTGGTCGTTGTCCTCAGCACGAGCTCGG GTTCAGGTGATTACTCCCCTGCTCCCCCTGGCTCCAACTGGGCTCCTTCAGTTCATCCCT TCAATCAACTGATTNTTTTGTTGGTAGGCATTGTATGTTTGCTGATGATTTGANANATTT GATCATACTGCAAANAGTGTACCTTACTTTTGATGTAATCCTTTTTTGGATCGGTCCATA TTTGAATTGAACTTTGTNTCATTGNCCAAAAAAAAAAAAAAAAAAAAA



consensusID : consensus_13923#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 257
fasta sequence
                              [CTCTGGTGTTGGGATCGCGAATGAGGGAGATTGGGTGGTCGTTGTCCTCAGCACGAGCTCGGGTTCAGGTGATTACTCCCCTGCTCCCCCTGGCTCCAACTGGGCTCCTTCAGTTCATCCCTTCAATCAACTGATTCTTTTGTTGGTAGGCATTGTATGTTTGCTGATGATTTGAGAGATTTGATCATACTGCAGAGAGTGTACCTTACTTTTGATGTAATCCTTTTTTGGATCGTNCAAAAAAAAAAAAANAAAAA]

[+] EMBL AU197333             [CTCTGGTGTTGGGATCGCGAATGAGGGAGATTGGGTGGTCGTTGTCCTCAGCACGAGCTCGGGTTCAGGTGATTACTCCCCTGCTCCCCCTGGCTCCAACTGGGCTCCTTCAGTTCATCCCTTCAATCAACTGATTCTTTTGTTGGTAGGCATTGTATGTTTGCTGATGATTTGAGAGATTTGATCATACTGCAGAGAGTGTACCTTACTTTTGATGTAATCCTTTTTTGGATCGTNCAAAAAAAAAAAAANAAAAA]


>consensus_13923#3 CTCTGGTGTTGGGATCGCGAATGAGGGAGATTGGGTGGTCGTTGTCCTCAGCACGAGCTC GGGTTCAGGTGATTACTCCCCTGCTCCCCCTGGCTCCAACTGGGCTCCTTCAGTTCATCC CTTCAATCAACTGATTCTTTTGTTGGTAGGCATTGTATGTTTGCTGATGATTTGAGAGAT TTGATCATACTGCAGAGAGTGTACCTTACTTTTGATGTAATCCTTTTTTGGATCGTNCAA AAAAAAAAAAANAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13923#1      ------------------------------------------------------------
consensus_13923#3      ------------------------------------------------------------
consensus_13923#0      AAAATTAAAAAGAAGTGGTTGGTGACAGCAACTCGCCTCCTTCCTCCTCACTCCTCTCCT 60
consensus_13923#2      ------------------------------------------------------------
                                                                                   

consensus_13923#1      -------GCCTGCCTCGCACCTCACTCTTCTTCCTCCCCGGCCGAGGCAACAGTAACACC 53
consensus_13923#3      ------------------------------------------------------------
consensus_13923#0      ACTTCTTGCCTGCCTCGCACCTCACTCTTCTTCCTCCCCGGCCGAGGCAACAGTAACACC 120
consensus_13923#2      ------------------------------------------------------------
                                                                                   

consensus_13923#1      GCTGCAGCAGCGAGGAATTGTGTCGGCGAGAATGGATTCCAGGATCTCCCTCGTCTGCTT 113
consensus_13923#3      ------------------------------------------------------------
consensus_13923#0      GCTGCAGCAGCGAGGAATTGTGTCGGCGAGAATGGATTCCAGGATCTCCCTCGTCTGCTT 180
consensus_13923#2      ------------------------------------------------------------
                                                                                   

consensus_13923#1      CCTCGTCCTCGCTTCCTCCTTGCTGCATTGCGCCAGATCTGATGGAAGTGATTCACAGCT 173
consensus_13923#3      ------------------------------------------------------------
consensus_13923#0      CCTCGTCCTCGCTTCCTCCTTGCTGCATTGCGCCAGATCTGATGGAAGTGATTCACAGCT 240
consensus_13923#2      ------------------------------------------------------------
                                                                                   

consensus_13923#1      TCTTAAGGGCATCAACAGCTACAGAGCTTCCCTCAAAGTCCCTGCGCTATCCGAGAACAA 233
consensus_13923#3      ------------------------------------------------------------
consensus_13923#0      TCTCAAGGGCATCAACAGCTACAGAGCTTCCCTCAAAGTCCCTGCGCTATCCGAGAACAA 300
consensus_13923#2      ------------------------------------------------------------
                                                                                   

consensus_13923#1      GAATGCTGCCTGCTTGGCTGAGCAGCTAGCACAGCAATTCAAAGACCAACCTTGCACCAA 293
consensus_13923#3      ------------------------------------------------------------
consensus_13923#0      GAATGCTGCCTGCTTGGCTGAGCAGCTAGCACAGCAATTCAAAGACCAACCTTGCACCAA 360
consensus_13923#2      ------------------------------------------------------------
                                                                                   

consensus_13923#1      CACCACCGGAGCAAACACTGTCCCTGGCACCGAGCAGCAGTTCCCCGACTACCCAAAGTA 353
consensus_13923#3      ------------------------------------------------------------
consensus_13923#0      CACCACCGGAGCAAACACTGTCCCTGGCACCGAGCAGCAGTTCCCCGACTACCCAAAGTA 420
consensus_13923#2      ------------------------------------------------------------
                                                                                   

consensus_13923#1      CCTCGACCATTGCCATCTCAACGCGTCGGTGACCGGAGACGGTCAGGTGATGCCGGCCTG 413
consensus_13923#3      ------------------------------------------------------------
consensus_13923#0      CCTCGACCATTGCCATCTCAACGCGTCGGTGACCGGAGACGGTCAGGTGATGCCGGCCTG 480
consensus_13923#2      ------------------------------------------------------------
                                                                                   

consensus_13923#1      CGTTCCCGGACTTGTACCTGATGTGGTTCTGACCAACTACACCAAGTCACAGTACAACCA 473
consensus_13923#3      ------------------------------------------------------------
consensus_13923#0      CGTTCCCGGACTTGTACCTGATGTGGTTCTGACCAACTACACCAAGTCACAGTACAACCA 540
consensus_13923#2      ------------------------------------------------------------
                                                                                   

consensus_13923#1      GTATCTGAATGACACCAAGTTCTCTGGTGTTGGGATCGCGAATGAGGGAGATTGGGTGGT 533
consensus_13923#3      ---------------------CTCTGGTGTTGGGATCGCGAATGAGGGAGATTGGGTGGT 39
consensus_13923#0      GTATCTGAATGACACCAAGTTCTCTGGTGTTGGGATCGCGAATGAGGGAGATTGGGTGGT 600
consensus_13923#2      -----------------------CTGGTGTTGGGATCGCGAATAAGGGANATTGGGTGGT 37
                                              ******************** ***** **********

consensus_13923#1      CGTGGTCCTCAGCACGAGCTCGGGTTCAGGTGATTACTCCCCTGCTCCCCCTGGCTCCAA 593
consensus_13923#3      CGTTGTCCTCAGCACGAGCTCGGGTTCAGGTGATTACTCCCCTGCTCCCCCTGGCTCCAA 99
consensus_13923#0      CGTTGTCCTCAGCACGAGCTCGGGTTCAGGTGATTACTCCCCTGCTCCCCCTGGCTCCAA 660
consensus_13923#2      CGTTGTCCTCAGCACGAGCTCGGGTTCAGGTGATTACTCCCCTGCTCCCCCTGGCTCCAA 97
                       *** ********************************************************

consensus_13923#1      CTGGGCTCCTTCAGTTCATCCCTTCAACCAACTGATTCTTTTGTTGGTAGGCATTGTATG 653
consensus_13923#3      CTGGGCTCCTTCAGTTCATCCCTTCAATCAACTGATTCTTTTGTTGGTAGGCATTGTATG 159
consensus_13923#0      CTGGGCTCCTTCAGTTCATCCCTTCAATCAACTGATTCTTTTGTTGGTAGGCATTGTATG 720
consensus_13923#2      CTGGGCTCCTTCAGTTCATCCCTTCAATCAACTGATTNTTTTGTTGGTAGGCATTGTATG 157
                       *************************** ********* **********************

consensus_13923#1      TTTGCTGATGATTTGAGAGATTTGATCATACTGCAGAGAGTGTACCTTACTTTTGATGTA 713
consensus_13923#3      TTTGCTGATGATTTGAGAGATTTGATCATACTGCAGAGAGTGTACCTTACTTTTGATGTA 219
consensus_13923#0      TTTGCTGATGATTTGAGAGATTTGATCATACTGCAGAGAGTGTACCTTACTTTTGATGTA 780
consensus_13923#2      TTTGCTGATGATTTGANANATTTGATCATACTGCAAANAGTGTACCTTACTTTTGATGTA 217
                       **************** * **************** * **********************

consensus_13923#1      ATCCTTTTTTGGATCG-TCCATATTTGAATTGAACTTTGTCTCATTGACAACTTGCTAGT 772
consensus_13923#3      ATCCTTTTTTGGATCG-TNCAAAAAAAAAAAAANAAAAA--------------------- 257
consensus_13923#0      ATCCTTTTTTGGATCG-TCCATATTTGAATTGAACTTTGTCTCATTGACAAAAAAAAAGT 839
consensus_13923#2      ATCCTTTTTTGGATCGGTCCATATTTGAATTGAACTTTGTNTCATTGNCCAAAAAAAAAA 277
                       **************** * ** *    **   *                           

consensus_13923#1      ATTTGCTATGAGGATATGGATCGGAACGTATTCTTTTGACTGTTTTTTCTTAAACCTTTG 832
consensus_13923#3      ------------------------------------------------------------
consensus_13923#0      TTTTGCTATGAAGATTTGGATCCGAACGTTNNNNNNNAANNNNNNNNNNNNNNNNNNNNN 899
consensus_13923#2      AAAAAAAAAAA------------------------------------------------- 288
                                                                                   

consensus_13923#1      ACTACAATATATAATGGTCCTTACCCATGTGTTCAAAAGAAAAAA 877
consensus_13923#3      ---------------------------------------------
consensus_13923#0      NNNNNTTN------------------------------------- 907
consensus_13923#2      ---------------------------------------------
                                                                    




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)