These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13926#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 951 fasta sequence [TTTTTTTTCCAATGATTACATTTATACAGGAGATGATAATAATAACATGAGTAATAAGAGTAGAGGCTGAAAATTTGGGAGAATATATGTGCCAAACTGCTCAATTAAGCTAGCTATGAGATCTGAATTTGATAGCAGTGCCAACTGCCCATGCA-TATATAATACTAGTAGAAAACAGTAATAATTTAAAACAGTCTTGGTTTATGCATGGTTTGATGTGCTGAACATCAAGGAAGCACCATGTAGAT-AGTAGAATTAATATGAGGTAGGATATATATGGAGGAGGGGAGAAGA-CAGGATGAG-CAAGAAAGAAGAAGATAGAGATTACAGAGGGCAGGGCA-GAC-GAACTGCAG-AAATGAA-GAAACTAAAGAAG-AAGT-AAAAATTAATCGGTGGTGATGTGTACTCCGATGACGATGACAAAGAGGGTGATGAGGGCGAAGTAGATGATGGAGTGGACGACGATGGACATGGCGCTGGTGTGCAGGTTGCCGAACTCGACGAAGTGGTGCCTCCCGGGGAGCTGGATGAGCAGCCCCGGCGAGAGCAGCACGAACAGCACCACCGCGATCACCACCGGCCCCCAGTCTGACATCCTTCCTAATTTCCTTTAATTAATGCTTGCTTTGCTTTCCTTCCTTAATCCTTCTTCCTCCTATTTCTTTCCCGATAGAGCTTCCTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTAGGAGCAGGAGGGTAGTAAGTAAGCGAGGCGAGCAGTAGTAGGAGCAGGTAAGGTAGGGTATGCAGATGCAAATGACTCACTCACTGTACTAGTATTGGCAACGTACGTACAGTACAGAGAGAATGAAAGAGAAAGAAGGTGAGGTGCGGTTCGTGGGAGTGGATGGATGGAAAGCACAGCAGAGAAGAGAANAGAAGCGCAGGTTATTAGGCTCGAATTCGACCGGTGCCTGCTCTACACT] [-] EMBL AU056982 [TTTTTTTTCCAATGATTACATTTATACAGGAGATGATAATAATAACATGAGTAATAAGAGTAGAGGCTGAAAATTTGGGAGAATATATGTGCCAAACTGCTCAATTAAGCTAGCTATGAGATCTGAATTTGATAGCAGTGCCAACTGCCCATGCA TATATAATACTAGTAGAAAACAGTAATAATTTAAAACAGTCTTGGTTTATGCATGGTTTGATGTGCTGAACATCAAGGAAGCACCATGTAGAT AGTAGAATTAATATGAGGTAGGATATATATGGGGGAGGGGAGAAGA CAGGATGAG CAAGAAAGAAGAAGATAGAGGTTACAGAGGGCAGGGCA GAC GAACT ] [-] EMBL AU056981 [ GANTATATGTGCCAAACTGCTCAATTAAGCTAGCTATGAGATCTGAATTTGATAGCAGTGCCAACTGCCCATGCATTATATAATACTAGTAGAAAACAGTAATAATTTAAAACAGTCTTGGTTTATGCATGGTTTGATGTGCTGAACATCAAGGAAGCACCATGTAGATAAGTAGAATTAATATGAGGTAGGATATATATGGAGGAGGGGAGAAGACCAGGATGAGCCAAGAAAGAAGAAGATAGAGATTACAGAGGGCAGGGCA GAC GAACTGCAG AAATGAA GAAACTAAAGAAG AAGT AAAAATTAATCGGTGGTGATGTGTACTCCGATGACGATGACAAAGAGGGTGATGAGGGCGAAGTAGATGATGGAGTGGACGACGATGGACATGGCGCTGGTGTGCAGGTTGCCGAACTCGACGAAGTGGTGCCTCCCGGGGAGCTGGATGAGCAGCCCCGGCGAGAGCAGCACGAACAGCACCACCGCGATCACCACCGGCCCCCAGTCTGACATCCTTCCTAATTTCCTTTAATTAATGCTTGCTTTGCTTTCCTTCCTTAATCCTTCTTCCTCCTATTTCTTTCCCGATAGAGCTTCCTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTAGGAGCAGG ] [+] EMBL CB681779 [ TATATGTGCCAAACTGCTCCACTTAGCTAGCTATGAGATCTGAATTTGATAGCAGTGCCAACTGCCCATGCA TATATAATACTAGTAGAAAACAGTAATAATTTAAAACAGTCTTGGTTTATGCATGGTTTGATGTGCTGAACATCAAGGAAGCACCATGTAGAT AGTAGAATTAATATGAGGTAGGATATATATGGAGGAGGGGAGAAGA CAGGATGAG CAAGAAAGAAGAAGATAGAGATTACAGAGGGCAGGGCA GAC GAACTGCAG AAATGAA GAAACTAAAGAAG AAGT AAAAATTAATCGGTGGTGATGTGTACTCCGATGACGATGACAAAGAGGGTGATGAGGGCGAAGTAGATGATGGAGTGGACGACGATGGACATGGCGCTGGTGTGCAGGTTGCCGAACTCGACGAAGTGGTGCCTCCCGGGGAGCTGGATGAGCAGCCCCGGCGAGAGCAGCACGAACAGCACCACCGCGATCACCACCGGCCCCCAGTCTGACATCCTTCCTAATTTCCTTTAATTAATGCTTGCTTTGCTTTCCTTCCTTAATCCTTCTTCCTCCTATTTCTTTCCCGATAGAGCTTCCTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTAGGAGCAGGAGGGTAGTAAGTAAGCGAGGCGAGCAGTAGTAGGAGCAGGTAAGcctcgtgcc ] [-] EMBL CB681778 [ TATGTGCCAAACTGCTCAATTAAGCTAGCTATGAGATCTGAATTTGATAGCAGTGCCAACTGCCCATGCA TATATAATACTAGTAGAAAACAGTAATAATTTAAAACAGTCTTGGTTTATGCATGGTTTGATGTGCTGAACATCAAGGAAGCACCATGTAGAT AGTAGAATTAATATGAGGTAGGATATATATGGAGGAGGGGAGAAGA CAGGATGAG CAAGAAAGAAGAAGATAGAGATTACAGAGGGCAGGGCA GAC GAACTGCAG AAATGAA GAAACTAAAGAAG AAGT AAAAATTAATCGGTGGTGATGTGTACTCCGATGACGATGACAAAGAGGGTGATGAGGGCGAAGTAGATGATGGAGTGGACGACGATGGACATGGCGCTGGTGTGCAGGTTGCCGAACTCGACGAAGTGGTGCCTCCCGGGGAGCTGGATGAGCAGCCCCGGCGAGAGCAGCACGAACAGCACCACCGCGATCACCACCGGCCCCCAGTCTGACATCCTTCCTAATTTCCTTTAATTAATGCTTGCTTTGCTTTCCTTCCTTAATCCTTCTTCCTCCTATTTCTTTCCCGATAGAGCTTCCTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTAGGAGCAGGAGGGTAGTAAGTAAGCGAGGCGAGCAGTAGGAGGA ] [+] EMBL CF305381 [ ttttTGAATTTGATAGCAGTGCCAACTGCCCATGCA TATATAATACTAGTAGAAAACAGTAATAATTTAAAACAGTCTTGGTTTATGCATGGTTTGATGTGCTGAACATCAAGGAAGCACCATGTAGAT AGTAGAATTAATATGAGGTAGGATATATATGGAGGAGGGGAGAAGA CAGGATGAG CAAGAAAGAAGAAGATAGAGATTACAGAGGGCAGGGCA GAC GAACTGCAG AAATGAA GAAACTAAAGAAG AAGT AAAAATTAATCGGTGGTGATGTGTACTCCGATGACGATGACAAAGAGGGTGATGAGGGCGAAGTAGATGATGGAGTGGACGACGATGGACATGGCGCTGGTGTGCAGGTTGCCGAACTCGACGAAGTGGTGCCTCCCGGGGAGCTGGATGAGCAGCCCCGGCGAGAGCAGCACGAACAGCACCACCGCGATCACCACCGGCCCCCAGTCTGACATCCTTCCTAATTTCCTTTAATTAATGCTTGCTTTGCTTTCCTTCCTTAATCCTTCTTCCTCCTATTTCTTTCCCGATAGAGCTTCCTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTAGGAGCAGGAGGGTAGTAAGTAAGCGAGGCGAGCAGTAGTAGGAGCAGGTAAG ] [+] EMBL BU673732 [ TTTGATAGCAGTGCCAACTGCCCATGCA TATATAATACTAGTAGAAAACAGTAATAATTTAAAACAGTCTTGGTTTATGCATGGTTTGATGTGCTGAACATCAAGGAAGCACCATGTAGAT AGTAGAATTAATATGAGGTAGGATATATATGGAGGAGGGGAGAAGA CAGGATGAG CAAGAAAGAAGAAGATAGAGATTACAGAGGGCAGGGCA GAC GAACTGCAG AAATGAA GAAACTA AAG AAGT AAAAATTAATCGGTGGTGATGTGTACTCCGATGACGATGACAAAGAGGGTGATGAGGGCGAAGTAGATGATGGAGTGGACGACGATGGACATGGCGCTGGTGTGCAGGTTGCCGAACTCGACGAAGTGGTGCCTCCCGGGGAGCTGGATGAGCAGCCCCGGCGAGAGCAGCACGAACAGCACCACCGCGATCACCACCGGCCCCCAGTCTGACATCCTTCCTAATTTCCTTTAATTAATGCTTGCTTTGCTTTCCTTCCTTAATCCTTCTTCCTCCTATTTCTTTCCCGA ] [-] EMBL AK066339 [ ACTGCCCATGCA TACATAATACTAGTAGAAAACAGTAATAATTTAAAACAGTCTTGGTTTATGCATGGTTTGATGTGCTGAACATCAAGGAAGCACCATGTAGAT AGTAGAATTAATATGAGGTAGGATATATATGGAGGAGGGGAGAAGA CAGGATGAG CAAGAAAGAAGAAGATAGAGATTACAGAGGGCAGGGCA GAC GAACTGCAG AAATGAA GAAACTAAAGAAG AAGT AAAAATTAATCGGTGGTGATGTGTACTCCGATGACGATGACAAAGAGGGTGATGAGGGCGAAGTAGATGATGGAGTGGACGACGATGGACATGGCGCTGGTGTGCAGGTTGCCGAACTCGACGAAGTGGTGCCTCCCGGGGAGCTGGATGAGCAGCCCCGGCGAGAGCAGCACGAACAGCACCACCGCGATCACCACCGGCCCCCAGTCTGACATCCTTCCTAATTTCCTTTAATTAATGCTTGCTTTGCTTTCCTTCCTTAATCCTTCTTCCTCCTATTTCTTTCCCGATAGAGCTTCCTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTAGGAGCAGGAGGGTAGTAAGTAAGCGAGGCGAGCAGTAGTAGGAGCAGGTAAGGTA ] [-] EMBL AU096781 [ tttttttTAATTTAAAACAGTCTTGGTTTATGCATGGTTTGATGTGCTGAACATCAAGGAAGCACCATGTAGAT AGTAGAATTAATATGAGGTAGGATATATATGGAGGAGGGGAGAAGA CAGG GGGG GGGGNAAGAAGAAGATAGAGATTACAGAGGGCANGGCA GAC GAACTGCAG AAATGAA GAAACTAAAGAAG AAGT AAAAATTAATCGGTGGTGATGTGTACTCCGATGACGATGACAAAGAGGGTGATGAGGGCCAA ] [-] EMBL AU197522 [ tta AGTAGAATTAATAT AGGTAGGATATATATGGAGGAGGGAAGAAGA CAGGATGAG CAAGAAAGAAGAAGATAGAGATTACAGAGGGCAGGGCA GAC GAACTGCAG AAATGAA GAAACTAAAGAAGAAAGT AAAAATTAATCGGTGGTGATGTGTACTCCGATGACGATGACAAAGAGGGTGATGAGGGCGAAGTAGATGATGGAGTGGACGACGATGGACATGGCGCTGGTGTGCAGGTTGCCGAACTCGACGAAGTGGTG CTCCCGGGGAGCTGGATGAGCAGCCCCGGCGAGAGCAGCACGAACAGCACCACCGCGATCACCACCGGCCCCCAGTCTGACATCCTTCCTAATTTCCTTTAATTAATGCTTGCTTTGCTTTCCTTCCTTAATCCTTCTTCCTCCTATTTCTTTCCCGATA ] [-] EMBL OSS15476A [ ATTACAGAGGGCAGGGCAGGACGGAACTGCAGNAAATGAAGGAAACTANAGAAG AAGTAAAAAATTAATCGGTGGTGATGTGTACTCCGATGACGATGACAAAGAGGGTGATGAGGGCGAAGTAGATGATGGAGTGGACGACGATGGACATGGCGCTGGTGTGCAGGTTGCCGAACTCGACGAAGTGGTGCCTCCCGGGGAGCTGGATGAGCAGCCCCGGCGAGAGCAGCACGAACAGCACCACCGCGATCACCACCGGCCCCCAGTCTGACATCCTTCCTAATTTCCTTTAATTAATGCTTGCTTTGCTTTCCTTCCTTAATCCTTCTTCCTCCTATTTCTTTCCCGATAGAGCTTCCTTGTTGTTGTTGTTGT ] [-] EMBL AU174750 [ GAGTGGACGACGATGGACATGGCGCTGGTGTGCAGGTTGCCGAACTCGACGAAGTGGTGCCTCCCGGGGAGCTGGATGAGCAGCCCCGGCGAGAGCAGCACGAACAGCACCACCGCGATCACCACCGGCCCCCAGTCTGACATCCTTCCTAATTTCCTTTAATTAATGCTTGCTTTGCTTTCCTTCCTTAATCCTTCTTCCTCCTATTTCTTTCCCGATAGAGCTTCCTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTAGGAGCAGGAGGGTAGTAAGTAAGCGAGGCGAGCAGTAGTAGGAGCAGGTAAGGTAGGGTATGCAGATGCAAATGACTCACTCACTGTACTAGTATTGGCAACGTACGTACAGTACAGAGAGAATGAAAGAGAAAGAAGGT ] [-] EMBL C73176 [ GCACCACCNCGATCACCACCGGCCCCAAG CTGACATCCTTCCTAATTTCCTTTAATTAATGCTTGCTTTGCTTTCCTTCCTTAATCCTTCTTCCTCCTATTTCTTTCCCGATAGAGCTTCCTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTAGGAGCAGGAGGGTAGTAAGTAAGCGAGGCGAGCAGTAGTAGGAGCAGGTAAGGTAGGGTATGCAGATGCAAATGACTCACTCACTGTACTAGTATTGGCAACGTACGTACAGTACAGAGAGAATGAAAGAGAAAGAAGGTGAGGTGCGGTTCGTGGGAGTGGATGGATGGAAAGCACAGCAGAGAAGAGAANAGAAGCGCAGGTTATTAGGCTCGAATTCGACCGGTGCCTGCTCTACACT] [-] EMBL OSC0071 [ GGGTAGTAAGTAAGCGAGGCGAGCAGTAGTAGGAGCAGGTAAGGTAGGGTATGCAG ] consensusID : consensus_13926#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 326 fasta sequence [AAATTAANCGGTGGTAAATGTGTACNCCGATGACTATGANAAAGAGGGTGATGAGGCCGAAGTAGATGATGAAGTGGACGACGATGNACATGGCGNTGNTGTGNAGGTTGCCGAACTCGACGAAGTGGTGCCTCCCGGGNAGCTGGATNAGAAGCCCCGGCGAGAGNAGCACGAACAGNACCACCGCGATNACCACCGGCCCCNAGTCTGACATCCTTCCTAATTTCCTTTAATTAATGCTTGCTTTGCTTTCCTTCCTTAATCCTTCTTCCTCCTATTTCTTTCCCGATAGAGCTTCCTTGTTGTTGTTGCGGACGCGTGGGCGG] [-] EMBL OSS11519A [AAATTAANCGGTGGTAAATGTGTACNCCGATGACTATGANAAAGAGGGTGATGAGGCCGAAGTAGATGATGAAGTGGACGACGATGNACATGGCGNTGNTGTGNAGGTTGCCGAACTCGACGAAGTGGTGCCTCCCGGGNAGCTGGATNAGAAGCCCCGGCGAGAGNAGCACGAACAGNACCACCGCGATNACCACCGGCCCCNAGTCTGACATCCTTCCTAATTTCCTTTAATTAATGCTTGCTTTGCTTTCCTTCCTTAATCCTTCTTCCTCCTATTTCTTTCCCGATAGAGCTTCCTTGTTGTTGTTGCGGACGCGTGGGCGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13926#0 TTTTTTTTCCAATGATTACATTTATACAGGAGATGATAATAATAACATGAGTAATAAGAG 60 consensus_13926#1 ------------------------------------------------------------ consensus_13926#0 TAGAGGCTGAAAATTTGGGAGAATATATGTGCCAAACTGCTCAATTAAGCTAGCTATGAG 120 consensus_13926#1 ------------------------------------------------------------ consensus_13926#0 ATCTGAATTTGATAGCAGTGCCAACTGCCCATGCATATATAATACTAGTAGAAAACAGTA 180 consensus_13926#1 ------------------------------------------------------------ consensus_13926#0 ATAATTTAAAACAGTCTTGGTTTATGCATGGTTTGATGTGCTGAACATCAAGGAAGCACC 240 consensus_13926#1 ------------------------------------------------------------ consensus_13926#0 ATGTAGATAGTAGAATTAATATGAGGTAGGATATATATGGAGGAGGGGAGAAGACAGGAT 300 consensus_13926#1 ------------------------------------------------------------ consensus_13926#0 GAGCAAGAAAGAAGAAGATAGAGATTACAGAGGGCAGGGCAGACGAACTGCAGAAATGAA 360 consensus_13926#1 ------------------------------------------------------------ consensus_13926#0 GAAACTAAAGAAGAAGTAAAAATTAATCGGTGGTGA-TGTGTACTCCGATGACGATGACA 419 consensus_13926#1 -------------------AAATTAANCGGTGGTAAATGTGTACNCCGATGACTATGANA 41 ******* ******* * ******* ******** **** * consensus_13926#0 AAGAGGGTGATGAGGGCGAAGTAGATGATGGAGTGGACGACGATGGACATGGCGCTGGTG 479 consensus_13926#1 AAGAGGGTGATGAGGCCGAAGTAGATGATGAAGTGGACGACGATGNACATGGCGNTGNTG 101 *************** ************** ************** ******** ** ** consensus_13926#0 TGCAGGTTGCCGAACTCGACGAAGTGGTGCCTCCCGGGGAGCTGGATGAGCAGCCCCGGC 539 consensus_13926#1 TGNAGGTTGCCGAACTCGACGAAGTGGTGCCTCCCGGGNAGCTGGATNAGAAGCCCCGGC 161 ** *********************************** ******** ** ********* consensus_13926#0 GAGAGCAGCACGAACAGCACCACCGCGATCACCACCGGCCCCCAGTCTGACATCCTTCCT 599 consensus_13926#1 GAGAGNAGCACGAACAGNACCACCGCGATNACCACCGGCCCCNAGTCTGACATCCTTCCT 221 ***** *********** *********** ************ ***************** consensus_13926#0 AATTTCCTTTAATTAATGCTTGCTTTGCTTTCCTTCCTTAATCCTTCTTCCTCCTATTTC 659 consensus_13926#1 AATTTCCTTTAATTAATGCTTGCTTTGCTTTCCTTCCTTAATCCTTCTTCCTCCTATTTC 281 ************************************************************ consensus_13926#0 TTTCCCGATAGAGCTTCCTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTAGGAGCAGGA 719 consensus_13926#1 TTTCCCGATAGAGCTTCCTTGTTGTTGTTGCGGACGC-GTGGGCGG-------------- 326 ****************************** * * ** * * consensus_13926#0 GGGTAGTAAGTAAGCGAGGCGAGCAGTAGTAGGAGCAGGTAAGGTAGGGTATGCAGATGC 779 consensus_13926#1 ------------------------------------------------------------ consensus_13926#0 AAATGACTCACTCACTGTACTAGTATTGGCAACGTACGTACAGTACAGAGAGAATGAAAG 839 consensus_13926#1 ------------------------------------------------------------ consensus_13926#0 AGAAAGAAGGTGAGGTGCGGTTCGTGGGAGTGGATGGATGGAAAGCACAGCAGAGAAGAG 899 consensus_13926#1 ------------------------------------------------------------ consensus_13926#0 AANAGAAGCGCAGGTTATTAGGCTCGAATTCGACCGGTGCCTGCTCTACACT 951 consensus_13926#1 ---------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||