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Oryza sativa
cluster # 13939 cluster # 13939       Sequences # 14       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_13939#0 length = 861 sequences # 11  
consensus_13939#1 length = 706 sequences # 2  
consensus_13939#2 length = 442 sequences # 1  

consensusID : consensus_13939#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 11
consensus length = 861
fasta sequence
                              [TGGACTGAAGGAGTAGAAACTCGGGAATTTCTTCTTCTCCGCTGCTGCTCCTCCCGTGCCGCCGCCGTCTCGCGCCAGTGCGTCTCTTCCTCGCGCGGCGATCATGGCGGAGCAGACTGAGAGGGCATTCTTGAAGCAGCCTAAGGTTTTTCTCTGTCCTAAGAAAACCACCAAGGGGAAGAAGCCTGGCAAGGGCGGGAATAGGTTCTGGAAGAACATTGGCCTTGGGTTCAAGACACCCAGGGAAGCCATCGAAGGAACCTACATTGACAAGAAATGCCCATTCACTGGTAC-TGTATCAATTAGGGGTCGTATCATAGCTGGAACATGTCATAGTGC-TAAGATGAACAGGACCATTA-TTGTTCGGAGGAATTATCTGCACTTTGTC-AAGAAGTA-CCAGAGGTACGA-GAAGAGGCACTCCAATA-TTCCTGCTCACATTTCACCGTGC-TTCCGTGTT-AA-GGAAGGAGATCACGTGATCATTGGCCAGTGCAGGCCACTGTCAAAGACCGTGA-GGTTCAATGTGCTGAAGGTCATTCCGGCAGGGTCAAAGAGTGGTG-CAGGGAAGAAGGTTTTCACAGCCGCTTAAGATGTATATGAGGAGATATTCAGGGTTCTGAAAGCTTTGATCATGAGATTTTGATGCCA-CCTAGATGTCTTTCTCGTGTCTACCATCTTGACTAGACAAGAGTTTACCTTTCTGTACTAGGAATTTGACTTGACTTTACTTGTCAAGCTTAAAATCTTAAGAAGTTTCTGCGCCCATGTCTGTCTGTGTACTGATCGTTTTCCCATTCAATCAACATATAGTTTGTAGAATGCTTGACGATGTGAAGATCTATCAAAAAAAAAAAAAGCTCGTCT]

[+] EMBL CF276125             [TGGACTGAAGGAGTAGAAACTCGGGAATTTCTTCTTCTCCGCTGCTGCTCCTCCCGTGCCGCCGCCGTCTCGCGCCAGTGCGTCTCTTCCTCGCGCGGCGATCATGGCGGAGCAGACTGAGAGGGCATTCTTGAAGCAGCCTAAGGTTTTTCTCTGTCCTAAGAAAACCACCAAGGGGAAGAAGCCTGGCAAGGGCGGGAATAGGTTCTGGAAGAACATTGGCCTTGGGTTCAAGACACCCAGGGAAGCCATCGAAGGAACCTACATTGACAAGAAATGCCCATTCACTGGTAC TGTATCAATTAGGGGTCGTATCATAGCTGGAACATGTCATAGTGC TAAGATGAACAGGACCATTA TTGTTCGGAGGAATTATCTGCACTTTGTC AAGAAGTA CCAGAGGTACGA GAAGAGGCACTCCAATA TTCCTGCTCACATTTCACCGTGC TTCCGTGTT AA GGAAGGAGATCACGTGATCATTGGCCAGTGCAGGCCACTGTCAAAGACCGTGAGGGCTCAATGTGCTGAAGGTC                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL AK120520             [                           TTTCTTCTTCTCCGCTGCTGCTCCTCCCGTGCCGCCGCCGTCTCGCGCCAGTGCGTCTCTTCCTCGCGCGGCGATCATGGCGGAGCAGACTGAGAGGGCATTCTTGAAGCAGCCTAAGGTTTTTCTCTGTCCTAAGAAAACCACCAAGGGGAAGAAGCCTGGCAAGGGCGGGAATAGGTTCTGGAAGAACATTGGCCTTGGGTTCAAGACACCCAGGGAAGCCATCGAAGGAACCTACATTGACAAGAAATGCCCATTCACTGGTAC TGTATCAATTAGGGGTCGTATCATAGCTGGAACATGTCATAGTGC TAAGATGAACAGGACCATTA TTGTTCGGAGGAATTATCTGCACTTTGTC AAGAAGTA CCAGAGGTACGA GAAGAGGCACTCCAATA TTCCTGCTCACATTTCACCGTGC TTCCGTGTT AA GGAAGGAGATCACGTGATCATTGGCCAGTGCAGGCCACTGTCAAAGACCGTGA GGTTCAATGTGCTGAAGGTCATTCCGGCAGGGTCAAAGAGTGGTG CAGGGAAGAGGGTTTTCACAGCCGCTTAAGATGTATATGAGGAGATATTCAGGGTTCTGAAAGCTTTGATCATGAGATTTTGATGCCA CCTAGATGTCTTTCTCGTGTCTACCATCTTGACTAGACAAGAGTTTACCTTTCTGTACTAGGAATTTGACTTGACTTTACTTGTCAAGCTTAAAATCTTAAGAAGTTTCTGCGCCCATGTCTGTCTGTGTACTGATCGTTTTCCCATTCAATCAACATATAGTTTGTAGAATGCTTGACGATGTG                               ]
[+] EMBL CF278213             [                           TTTCTTCTTCTCCGCTGCTGCTCCTCCCGTGCCGCCGCCGTCTCGCGCCAGTGCGTCTCTTCCTCGCGCGGCGATCATGGCGGAGCAGACTGAGAGGGCATTCTTGAAGCAGCCTAAGGTTTTTCTCTGTCCTAAGAAAACCACCAAGGGGAAGAAGCCTGGCAGGGGCGGGAATAGGTTCTGGAAGAACATTGGCCTTGGGTTCAAGACACCCAGGGAAGCCATCGAAGGAACCTACATTGACAAGAAATGCCCATTCACTGGTAC TGTATCAATTAGGGGTCGTATCATAGCTGGAACATGTCATAGTGC TAAGATGAACAGGACCATTA TTGTTCGGAGGAATTATCTGCACTTTGTC AAGAAGTA CCAGAGGTACGA GAAGAGGCACTCCAATA TTCCTGCTCACATTTCACCGTGC TTCCGTGTT AA GGAAGGAGATCACGTGATCATTGGCCAGTGCAGGCC                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL C73689               [                                       CGCTGCTGCTCCTCCCGTGCCGCCGCCGTCTCGCGCCAGTGCGTCTCTTCCTCGCGCGGCGATCATGGCGGAG AGACTGAGAGGGCATTCTTGAAGCAGCCTAAGGTTTTTCTCTGTCCTAAGAAAACCACCAAGGGGAAGAAGCCTGGCAAGGGCGGGAATAGGTTCTGGAAGAACATTGGCCTTGGGTTCAAGACACCCAGGGAAGCCATCGAAGGAACCTACATTGACAAGAAATGCCCATTCACTGGTACTTGTATCAATTAGGGGTCGTATCATAGCTGGAACATGTCATAGTGCTTAAGATGAACAGGACCATTATTTGTTCGGAGGAATTATCTGCACTTTGTCAAAGAAGTACCCAGAGGTACGAGGAAGAGGCACTNCAATATTTCCTGCTTACATTTCACCGTGCTTTCCGTGTTNAAGGGAAGGGGATCA                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CB678757             [                                             TGCTCCTCCCGTGCCGCCGCCGTCTCGCGCCAGTGCGTCTCTTCCTCGCGCGGCGATCATGGCGGAGCAGACTGAGAGGGCATTCTTGAAGCAGCCTAAGGTTTTTCTCTGTCCTAAGAAAACCACCAAGGGGAAGAAGCCTGGCAAGGGCGGGAATAGGTTCTGGAAGAACATTGGCCTTGGGTTCAAGACACCCAGGGAAGCCATCGAAGGAACCTACATTGACAAGAAATGCCCATTCACTGGTAC TGTATCAATTAGGGGTCGTATCATAGCTGGAACATGTCATAGTGC TAAGATGAACAGGACCATTA TTGTTCGGAGGAATTATCTGCACTTTGTC AAGAAGTA CCAGAGGTACGA GAAGAGGCACTCCAATA TTCCTGCTCACATTTCACCGTGC TTCCGTGTT AA GGAAGGAGATCACGTGATCATTGGCCAGTGCAGGCCACTGTCAAAGACCGTGA GGTTCAATGTGCTGAAGGTCATTCCGGCAGGGTCAAAGAGTGGTG CAGGGAAGAAGGTTTTCACAGCCGCTTAAGATGTATATGAGGAGATATTCAGGGTTCTGAAAGCTTTGATCATGAGATTTTGATGCCA CCTAGATGTCTTTCTCGTGTCTACCATCTTGACTAGACAAGAGTTTACCTTTCTGTACTAGGAATTTGACTTGACTTTACTTGTCAAGCTTAAAATCTTAAGAAGTTTCTGCGCCCATGTCTGTCTGTGTACTGATCGTTTTCCCATTCAATCAACATATAGTTTGTAGAATGCTTGACGATGTG                               ]
[+] EMBL CB634661             [                                             TGCTCCTCCCGCGCCGCCGCCGTCTCGCGCCAGTGCGTCTCTTCCTCGCGCGGCGATCATGGCGGAGCAGACTGAGAGGGCATTCTTGAAGCAGCCTAAGGTTTTTCTCTGTCCTAAGAAAACCACCAAGGGGAAGAAGCCTGGCAAGGGCGGGAATAGGTTCTGGAAGAACATTGGCCTTGGGTTCAAGACACCCAGGGAAGCCATCGAAGGAACCTACATTGACAAGAAATGCCCATTCACTGGTAC TGTATCAATTAGGGGTCGTATCATAGCTGGAACATGCCATAGTGC TAAGATGAACAGGACCATTA TTGTTCGGAGGAATTATCTGCACTTTGTC AAGAAGTA CCAGAGGTACGA GAAGAGGCACTCCAATA TTCCTGCTCACATTTCACCGTGC TTCCGTGTT AA GGAAGGAGATCACGTGATCATTGGCCAGTGCAGGCCACTGTCAAAGACCGTGA GGTTCAATGTGCTGAAGGTCATTCCGGCAGGGTCAAAGAGTGGTG CAGGGAAGAAGGTTTTCACAGCCGCTTAAGATGTATATGAGGAGATATTCAGGGTTCTGAAAGCTTTGATCATGAGATTTTGATGCCA CCTAGATGTCTTTCTCGTGTCTACCATCTTGACTAGACAAGAGTTTACCTTTCTGTACTAGGAATTTGACTTGACTTTACTTGTCAAGCTTAAAATCTTAAGAAGT                                                                                                              ]
[-] EMBL CB678758             [                                                                                                                                                                         ACCAAGGGGAAGAAGCCTGGCAAGGGCGGGAATAGGTTCTGGAAGAACATTGGCCTTGGGTTCAAGACACCCAGGGAAGCCATCGAAGGAACCTACATTGACAAGAAATGCCCATTCACTGGTAC TGTATCAATTAGGGGTCGTATCATAGCTGGAACATGTCATAGTGC TAAGATGAACAGGACCATTA TTGTTCGGAGGAATTATCTGCACTTTGTC AAGAAGTA CCAGAGGTACGA GAAGAGGCACTCCAATA TTCCTGCTCACATTTCACCGTGC TTCCGTGTT AA GGAAGGAGATCACGTGATCATTGGCCAGTGCAGGCCACTGTCAAAGACCGTGA GGTTCAATGTGCTGAAGGTCATTCCGGCAGGGTCAAAGAGTGGTG CAGGGAAGAAGGTTTTCACAGCCGCTTAAGATGTATATGAGGAGATATTCAGGGTTCTGAAAGCTTTGATCATGAGATTTTGATGCCA CCTAGATGTCTTTCTCGTGTCTACCATCTTGACTAGACAAGAGTTTACCTTTCTGTACTAGGAATTTGACTTGACTTTACTTGTCAAGCTTAAAATCTTAAGAAGTTTCTGCGCCCATGTCTGTCTGTGTACTGATCGTTTTCCCATTCAATCAACATATAGTTTGTAGAATGCTTGACGATGGGAAGATCTATCAAAAAAAAAAAAAGCTCGTCT]
[+] EMBL BI799571             [                                                                                                                                                                                                                                                                                                                                         TGCCATAGTGC TAAGATGAACAGGACCATTA TTGTTCGGAGGAATTATCTGCACTTTGTC AAGAAGTA CCAGAGGTACGA GAAGAGGCACTCCAATA TTCCTGCTCACATTTCACCGTGC TTCCGTGTT AA GGAAGGAGATCACGTGATCATTGGCCAGTGCAGGCCACTGTCAAAGACCGTGA GGTTCAATGTGCTGAAGGTCATTCCGGCAGGGTCAAAGAGTGGTG CAGGGAAGAAGGTTTTCACAGCCGCTTAAGATGTATATGAGGAGATATTCAGGGTTCTGAAAGCTTTGATCATGAGATTTTGATGCCA CCTAGATGTCTTTCTCGTGTCTACCATCTTGACTAGAC AGAGTTTACCTTTCTGTACTAGGAATTTGACTTGACTTTACTTGTCAAGCTTAAAATCTTAAGAAGTTTCTGCGCCCATGTCTGTCTGTGTACTGATCGTTTTCCCATTCAATCAACATATAGTTTGTAGAATGCTTGACGATGTGAAGATCTATCAAAAA                ]
[+] EMBL BI804151             [                                                                                                                                                                                                                                                                                                                                                                                                    GTC AAGAAGTA CCAGAGGTACGA GAAGAGGCACTCCAATA TTCCTGCTCACATTTCACCGTGC TTCCGTGTT AA GGAAGGAGATCACGTGATCATTGGCCAGTGCAGGCCACTGTCAAAGACCGTGA GGTTCAATGTGCTGAAGGTCATTCCGGCAGGGTCAAAGAGTGGTG CAGGGAAGAAGGTTTTCACAGCCGCTTAAGATGTATATGAGGAGATATTCAGGGTTCTGAAAGCTTTGATCATGAGATTTTGATGCCA CCTAGATGTCTTTCTCGTGTCTACCATCTTGACTAGACAAGAGTTTACCTTTCTGTACTAGGAATTTGACTTGACTTTACTTGTCAAGCTTAAAATCTTAAGAAGTTTCTGCGCCCAaaaaaaaaa                                                                                          ]
[+] EMBL BI803296             [                                                                                                                                                                                                                                                                                                                                                                                                    GTC AAGAAGTA CCAGAGGTACGA GAAGAGGCACTCC ATA TTCCTGCTCACATTTCACCGTGC TTCCGTGTT AA GGAAGGAGATCACGTGATCATTGGCCAGTGCAGGCCACTGTCAAAGACCGTGA GGTTCAATGTGCTGAAGGTCATTCCGGCAGGGTC AAGAGTGGTGCCAGGGAAGAAGGTTTTCACAGCCGCTTAAGATGTATATGAGGAGATATTCAGGGTTCTGAAAGCTTTGATCATGAGATTTTGATGCCACCCTAGATGTCTTTCTCGTGTCTACCATCTTGACTAGACAAGAGTTTACCTTTCTGTACTAGGAATTTGACTTGACTTTACTTGTCAAGCTTAAAATCTTAAGAAGTTTCTGCGCCCAaaaaaaaaa                                                                                          ]
[-] EMBL CF276126             [                                                                                                                                                                                                                                                                                                                                                                                                               A CCAGAGGTACGA GAAGAGGCACTCCAATA TTCCTGCTCACATTTCACCGTGC TTCCGTGTT AA GGAAGGAGATCACGTGATCATTGGCCAGTGCAGGCCACTGTCAAAGACCGTGA GGCTCAATGTGCTGAAGGTCATTCCGGCAGGGTCAAAGAGTGGTG CAGGGAAGAAGGTTTCTACAGCCGCTTAAGATGTATATGAGGAGATATTCAGGGTTCTGAAAGCTTTGATCATGAGATTTCGATGCCA CCTAGATGTCTTTCTCGTGTCTACCATCTTGACTAGACAAGAGTTTACCTTTCTGTACTAGGAATTTGACTTGACTTTACTTGTCAAGCTTAAAATCTTAAGAAGTTTCTGCGCCCGTGTCTGTCTGTGTACTGATCGTTTTCCCATTCAATCAACATATAGTTTGTAGAATGCTTGACAATGT AAGATC ATCAAAAA                ]


>consensus_13939#0 TGGACTGAAGGAGTAGAAACTCGGGAATTTCTTCTTCTCCGCTGCTGCTCCTCCCGTGCC GCCGCCGTCTCGCGCCAGTGCGTCTCTTCCTCGCGCGGCGATCATGGCGGAGCAGACTGA GAGGGCATTCTTGAAGCAGCCTAAGGTTTTTCTCTGTCCTAAGAAAACCACCAAGGGGAA GAAGCCTGGCAAGGGCGGGAATAGGTTCTGGAAGAACATTGGCCTTGGGTTCAAGACACC CAGGGAAGCCATCGAAGGAACCTACATTGACAAGAAATGCCCATTCACTGGTACTGTATC AATTAGGGGTCGTATCATAGCTGGAACATGTCATAGTGCTAAGATGAACAGGACCATTAT TGTTCGGAGGAATTATCTGCACTTTGTCAAGAAGTACCAGAGGTACGAGAAGAGGCACTC CAATATTCCTGCTCACATTTCACCGTGCTTCCGTGTTAAGGAAGGAGATCACGTGATCAT TGGCCAGTGCAGGCCACTGTCAAAGACCGTGAGGTTCAATGTGCTGAAGGTCATTCCGGC AGGGTCAAAGAGTGGTGCAGGGAAGAAGGTTTTCACAGCCGCTTAAGATGTATATGAGGA GATATTCAGGGTTCTGAAAGCTTTGATCATGAGATTTTGATGCCACCTAGATGTCTTTCT CGTGTCTACCATCTTGACTAGACAAGAGTTTACCTTTCTGTACTAGGAATTTGACTTGAC TTTACTTGTCAAGCTTAAAATCTTAAGAAGTTTCTGCGCCCATGTCTGTCTGTGTACTGA TCGTTTTCCCATTCAATCAACATATAGTTTGTAGAATGCTTGACGATGTGAAGATCTATC AAAAAAAAAAAAAGCTCGTCT



consensusID : consensus_13939#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 706
fasta sequence
                              [GTCTCGCGCCAGTGCGTCTCTTCCTCGCGCGGCGATCATGGCGGAGCAGACTGAGAGGGCATTCTTGAAGCAGCCTAAGGTTTTTCTCTGTCCTAAGAAAACCACCAAGGGGAAGAAGCCTGGCAAGGGCGGGAATAGGTTCTGGAAGAACATTGGCCTTGGGTTCAAGACACCCAGGGAAGCCATCGAAGGAACCTACATTGACAAGAAATGCCCATTCACTGGTACTGTATCAATTAGGGGTCGTATCATAGCTGGAACATGCCATAGTGCTAAGATGAACAGGACCATTATTGTTCGGAGGAATTATCTGCACTTTGTCAAGAAGTACCAGAGGTACGAGAAGAGGCACTCCAATATTCCTGCTCACATTTCACCGTGCTTCCGTGTTAAGGAAGGAGATCACGTGATCATTGGCCAGTGCAGGCCACTGTCAAAGACCGTGAGGTTCAATGTGCTGAAGGTCATTCCGGCAGGGTCAAAGAGTGGTGCAGGGAAGAAGGTTTTCACAGCCGCTTAAGATGTATATGAGGAGATATTCAGGGTTCTGAAAGCTTTGATCATGAGATTTTGATGCCACCTAGATGTCTTTGTGGTGTCTACCATCTTGACTAGACAAGAGTTTACCTTTCTGTACTAGGAATTTGACTTGACTTTACTTGAAGGGCTTAAAATCTTAAGAAGTTTCTGCGCCCAAAATATAAAG]

[-] EMBL CB634662             [GTCTCGCGCCAGTGCGTCTCTTCCTCGCGCGGCGATCATGGCGGAGCAGACTGAGAGGGCATTCTTGAAGCAGCCTAAGGTTTTTCTCTGTCCTAAGAAAACCACCAAGGGGAAGAAGCCTGGCAAGGGCGGGAATAGGTTCTGGAAGAACATTGGCCTTGGGTTCAAGACACCCAGGGAAGCCATCGAAGGAACCTACATTGACAAGAAATGCCCATTCACTGGTACTGTATCAATTAGGGGTCGTATCATAGCTGGAACATGCCATAGTGCTAAGATGAACAGGACCATTATTGTTCGGAGGAATTATCTGCACTTTGTCAAGAAGTACCAGAGGTACGAGAAGAGGCACTCCAATATTCCTGCTCACATTTCACCGTGCTTCCGTGTTAAGGAAGGAGATCACGTGATCATTGGCCAGTGCAGGCCACTGTCAAAGACCGTGAGGTTCAATGTGCTGAAGGTCATTCCGGCAGGGTCAAAGAGTGGTGCAGGGAAGAAGGTTTTCACAGCCGCTTAAGATGTATATGAGGAGATATTCAGGGTTCTGAAAGCTTTGATCATGAGATTTTGATGCCACCTAGATGTCTTTGTGGTGTCTACCATCTTGACTAGACAAGAGTTTACCTTTCTGTACTAGGAATTTGACTTGACTTTACTTGAAGGGCTTAAAATCTTAAGAAGTTTCTGCGCCCAAAATATAAAG]
[-] EMBL CA923255             [    CGCGCCAGTGCGTCTCTTCCTCGCGCGGCGATCATGGCGGAGCAGACTGAGAGGGCATTCTTGAAGCAGCCTAAGGTTTTTCTCTGTCCTAAGAAAACCACCAAGGGGAAGAAGCCTGGCAAGGGCGGGAATAGGTTCCGGAAGAACATTGGCCTTGGGTTCAAGACACCCAGGGAAGCCATCGAAGGAACCTACATTGACAAGAAATGCCCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]


>consensus_13939#1 GTCTCGCGCCAGTGCGTCTCTTCCTCGCGCGGCGATCATGGCGGAGCAGACTGAGAGGGC ATTCTTGAAGCAGCCTAAGGTTTTTCTCTGTCCTAAGAAAACCACCAAGGGGAAGAAGCC TGGCAAGGGCGGGAATAGGTTCTGGAAGAACATTGGCCTTGGGTTCAAGACACCCAGGGA AGCCATCGAAGGAACCTACATTGACAAGAAATGCCCATTCACTGGTACTGTATCAATTAG GGGTCGTATCATAGCTGGAACATGCCATAGTGCTAAGATGAACAGGACCATTATTGTTCG GAGGAATTATCTGCACTTTGTCAAGAAGTACCAGAGGTACGAGAAGAGGCACTCCAATAT TCCTGCTCACATTTCACCGTGCTTCCGTGTTAAGGAAGGAGATCACGTGATCATTGGCCA GTGCAGGCCACTGTCAAAGACCGTGAGGTTCAATGTGCTGAAGGTCATTCCGGCAGGGTC AAAGAGTGGTGCAGGGAAGAAGGTTTTCACAGCCGCTTAAGATGTATATGAGGAGATATT CAGGGTTCTGAAAGCTTTGATCATGAGATTTTGATGCCACCTAGATGTCTTTGTGGTGTC TACCATCTTGACTAGACAAGAGTTTACCTTTCTGTACTAGGAATTTGACTTGACTTTACT TGAAGGGCTTAAAATCTTAAGAAGTTTCTGCGCCCAAAATATAAAG



consensusID : consensus_13939#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 442
fasta sequence
                              [GTCTCGCGCCAGTNCGTCTCTTCCTCGCGCGGCGATCATGGCGGAGCAGACTGAGAGGGCATTCTTGAAGCAGCCCTAAGGTTTTTCTCTGTCCTAAGAAAACCACCAAGGGGAAGAAGCCTGGCAAGGGCGGGAATAGGTTCTGGAAGAACATTGGCCTTGGGTTCAAGACACCCAGGGAAGCCATCGAAGGAACCTACATTGACAAGAAATGCCCATTCACTGGTACTGTATCAATTAGGGGTCGTATCATAGCTGGAACATGTCATAGTGCTAAGATGAACAGGACCATTATTGTTCGGAGGAATTATCTGCACTTTGTCAAGAAGTACCAGAGGTACGAGAAGAGGCACTCCAATATTCCTGCTCACATTTCACCGTGCTTCCGTGTTAAGGAAGGAGATCACGTGATCATTGTGCTGTGAAAAAAAAAAAAAAAAAA]

[+] EMBL AU091919             [GTCTCGCGCCAGTNCGTCTCTTCCTCGCGCGGCGATCATGGCGGAGCAGACTGAGAGGGCATTCTTGAAGCAGCCCTAAGGTTTTTCTCTGTCCTAAGAAAACCACCAAGGGGAAGAAGCCTGGCAAGGGCGGGAATAGGTTCTGGAAGAACATTGGCCTTGGGTTCAAGACACCCAGGGAAGCCATCGAAGGAACCTACATTGACAAGAAATGCCCATTCACTGGTACTGTATCAATTAGGGGTCGTATCATAGCTGGAACATGTCATAGTGCTAAGATGAACAGGACCATTATTGTTCGGAGGAATTATCTGCACTTTGTCAAGAAGTACCAGAGGTACGAGAAGAGGCACTCCAATATTCCTGCTCACATTTCACCGTGCTTCCGTGTTAAGGAAGGAGATCACGTGATCATTGTGCTGTGAAAAAAAAAAAAAAAAAA]


>consensus_13939#2 GTCTCGCGCCAGTNCGTCTCTTCCTCGCGCGGCGATCATGGCGGAGCAGACTGAGAGGGC ATTCTTGAAGCAGCCCTAAGGTTTTTCTCTGTCCTAAGAAAACCACCAAGGGGAAGAAGC CTGGCAAGGGCGGGAATAGGTTCTGGAAGAACATTGGCCTTGGGTTCAAGACACCCAGGG AAGCCATCGAAGGAACCTACATTGACAAGAAATGCCCATTCACTGGTACTGTATCAATTA GGGGTCGTATCATAGCTGGAACATGTCATAGTGCTAAGATGAACAGGACCATTATTGTTC GGAGGAATTATCTGCACTTTGTCAAGAAGTACCAGAGGTACGAGAAGAGGCACTCCAATA TTCCTGCTCACATTTCACCGTGCTTCCGTGTTAAGGAAGGAGATCACGTGATCATTGTGC TGTGAAAAAAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13939#0      TGGACTGAAGGAGTAGAAACTCGGGAATTTCTTCTTCTCCGCTGCTGCTCCTCCCGTGCC 60
consensus_13939#1      ------------------------------------------------------------
consensus_13939#2      ------------------------------------------------------------
                                                                                   

consensus_13939#0      GCCGCCGTCTCGCGCCAGTGCGTCTCTTCCTCGCGCGGCGATCATGGCGGAGCAGACTGA 120
consensus_13939#1      ------GTCTCGCGCCAGTGCGTCTCTTCCTCGCGCGGCGATCATGGCGGAGCAGACTGA 54
consensus_13939#2      ------GTCTCGCGCCAGTNCGTCTCTTCCTCGCGCGGCGATCATGGCGGAGCAGACTGA 54
                             ************* ****************************************

consensus_13939#0      GAGGGCATTCTTGAAGCAGCC-TAAGGTTTTTCTCTGTCCTAAGAAAACCACCAAGGGGA 179
consensus_13939#1      GAGGGCATTCTTGAAGCAGCC-TAAGGTTTTTCTCTGTCCTAAGAAAACCACCAAGGGGA 113
consensus_13939#2      GAGGGCATTCTTGAAGCAGCCCTAAGGTTTTTCTCTGTCCTAAGAAAACCACCAAGGGGA 114
                       ********************* **************************************

consensus_13939#0      AGAAGCCTGGCAAGGGCGGGAATAGGTTCTGGAAGAACATTGGCCTTGGGTTCAAGACAC 239
consensus_13939#1      AGAAGCCTGGCAAGGGCGGGAATAGGTTCTGGAAGAACATTGGCCTTGGGTTCAAGACAC 173
consensus_13939#2      AGAAGCCTGGCAAGGGCGGGAATAGGTTCTGGAAGAACATTGGCCTTGGGTTCAAGACAC 174
                       ************************************************************

consensus_13939#0      CCAGGGAAGCCATCGAAGGAACCTACATTGACAAGAAATGCCCATTCACTGGTACTGTAT 299
consensus_13939#1      CCAGGGAAGCCATCGAAGGAACCTACATTGACAAGAAATGCCCATTCACTGGTACTGTAT 233
consensus_13939#2      CCAGGGAAGCCATCGAAGGAACCTACATTGACAAGAAATGCCCATTCACTGGTACTGTAT 234
                       ************************************************************

consensus_13939#0      CAATTAGGGGTCGTATCATAGCTGGAACATGTCATAGTGCTAAGATGAACAGGACCATTA 359
consensus_13939#1      CAATTAGGGGTCGTATCATAGCTGGAACATGCCATAGTGCTAAGATGAACAGGACCATTA 293
consensus_13939#2      CAATTAGGGGTCGTATCATAGCTGGAACATGTCATAGTGCTAAGATGAACAGGACCATTA 294
                       ******************************* ****************************

consensus_13939#0      TTGTTCGGAGGAATTATCTGCACTTTGTCAAGAAGTACCAGAGGTACGAGAAGAGGCACT 419
consensus_13939#1      TTGTTCGGAGGAATTATCTGCACTTTGTCAAGAAGTACCAGAGGTACGAGAAGAGGCACT 353
consensus_13939#2      TTGTTCGGAGGAATTATCTGCACTTTGTCAAGAAGTACCAGAGGTACGAGAAGAGGCACT 354
                       ************************************************************

consensus_13939#0      CCAATATTCCTGCTCACATTTCACCGTGCTTCCGTGTTAAGGAAGGAGATCACGTGATCA 479
consensus_13939#1      CCAATATTCCTGCTCACATTTCACCGTGCTTCCGTGTTAAGGAAGGAGATCACGTGATCA 413
consensus_13939#2      CCAATATTCCTGCTCACATTTCACCGTGCTTCCGTGTTAAGGAAGGAGATCACGTGATCA 414
                       ************************************************************

consensus_13939#0      TTGGCCAGTGCAGGCCACTGTCAAAGACCGTGAGGTTCAATGTGCTGAAGGTCATTCCGG 539
consensus_13939#1      TTGGCCAGTGCAGGCCACTGTCAAAGACCGTGAGGTTCAATGTGCTGAAGGTCATTCCGG 473
consensus_13939#2      TTGTGCTGTGAAAAAAAAAAAAAAAAAA-------------------------------- 442
                       ***  * *** *    *     *** *                                 

consensus_13939#0      CAGGGTCAAAGAGTGGTGCAGGGAAGAAGGTTTTCACAGCCGCTTAAGATGTATATGAGG 599
consensus_13939#1      CAGGGTCAAAGAGTGGTGCAGGGAAGAAGGTTTTCACAGCCGCTTAAGATGTATATGAGG 533
consensus_13939#2      ------------------------------------------------------------
                                                                                   

consensus_13939#0      AGATATTCAGGGTTCTGAAAGCTTTGATCATGAGATTTTGATGCCACCTAGATGTCTTTC 659
consensus_13939#1      AGATATTCAGGGTTCTGAAAGCTTTGATCATGAGATTTTGATGCCACCTAGATGTCTTTG 593
consensus_13939#2      ------------------------------------------------------------
                                                                                   

consensus_13939#0      TCGTGTCTACCATCTTGACTAGACAAGAGTTTACCTTTCTGTACTAGGAATTTGACTTGA 719
consensus_13939#1      TGGTGTCTACCATCTTGACTAGACAAGAGTTTACCTTTCTGTACTAGGAATTTGACTTGA 653
consensus_13939#2      ------------------------------------------------------------
                                                                                   

consensus_13939#0      CTTTACTTGTCAAGCTTAAAATCTTAAGAAGTTTCTGCGCCCATGTCTGTCTGTGTACTG 779
consensus_13939#1      CTTTACTTGAAGGGCTTAAAATCTTAAGAAGTTTCTGCGCCCAAAATATAAAG------- 706
consensus_13939#2      ------------------------------------------------------------
                                                                                   

consensus_13939#0      ATCGTTTTCCCATTCAATCAACATATAGTTTGTAGAATGCTTGACGATGTGAAGATCTAT 839
consensus_13939#1      ------------------------------------------------------------
consensus_13939#2      ------------------------------------------------------------
                                                                                   

consensus_13939#0      CAAAAAAAAAAAAAGCTCGTCT 861
consensus_13939#1      ----------------------
consensus_13939#2      ----------------------
                                             




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)