These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13945#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 2028 fasta sequence [CTTAGCTTAGTGTTTACCTAGCTAGCTAGCAGCTGGCTGCAACAAACATTCTGCATGCACTTTGAATTCTAGAGATAGGAGAGTTAATTAGATAGCTTAGCTACCACAATGCATGCGTGCAACCTGATAGCTTAGCTACGCGTAGTTGCCAATTCAACCGGCCGACATATATATCGGCCTGAGGAAACTAGTGGAGGACTCCAAAGGGATCGCATTGATCTGGCTAGCTATCTCGATCGATCGCCTCATCGATCGACGACGACGTGCGTGATCGATCAGTGCAATCCCTTTGGAATTTTCCTCTTGCTTCCGCCTCCTCATCTTCCTTGATCGATCGATCCTTTGCCTGCTGGACGCGCTTGCCTGCCGGCTTGCTTCTTCCATCGCCGCCTTGATCAATCCGCAAGCTGCTCCAGATTCAGGAGTTAAATCGAAGCCCAACGCTAGCACACAGGTGTGTATCGTATACAATTACTGCATATGTATGCATGCTCCACATCAGTATATTGATCATCCCCGTATACAAGAAATGAACAACAGTAGGAGTAGTATTGAGTATTCTAGTGTTACTTTCTTTTACTTTGAGAACGAATTAATGGCATCTAATTTGTGTAAGCAAATTACTACTGGTTTCACTAGTCCTGAATTGTAGATGTAAGCTACTAGCTGTTAGACTATAAGAAGCCATTAATTAGTCGATAACAACATGCAATTGCATCTTGTCTTTATTTGACTATATATGTTGTTTTTTTCCAGTATGTATATGTTTAAAGCCCTATCGATCTAACTCTGAATATGCTAAGATAGAGTACAGAAAACATGATGCATATGCACCAGTACTGCTTGCAGGACTGTTCAGACATAATTTAATTTGTTATGCATCTGACCTGATCATCAAGTGGATTGATTGGTGATATATAAATGGTAACAAAAGTATAGTAGTGGAGAAGAAACGTGGAGAATTGGGTTTTACATTAAACTTTGCACGGTACAAGACATTAGACATCGATCGGTGCCTAAGCTAGTTGGAATTTTGCAATGATCTTCCCTTTTTCTGATCTTGCTTTTTGTGTGCATTAATTGTTCCGCTTGTTGCTTGAGAGTTGGAGTAGTACGCATCTCGATTGCAACTCATTTTGCGCGTGAATGAGTACCAATTTGGATTCGATCGTCATCGAGAAAGAGACAA-GATACATATTTTTTGCGAACGCGTAAAAAAATAGCACGTCAATATATTAGAAGAAACTGATACATACTCCGTAGCTATCTTAATTTTATCTCTCCATCGCATGCAACTAAACTAATGTACTACTATATTTTCTCTTATCAAGAGAAAAGGAACACAAACGATCATTGCACAATATTTCCGGAACCCAAATAAGCTAGCTCTGTCAATGCTTATAAACGTACTCCTATATAAAATATATAGTTGATGATATGCCATGATGCATTATTGAACACAGTGATGTCTGCTGAAAGTGCATATTTGGCAGTGCAAGAAGGTCTTTTGACAGACAGGGTAAAACATATAGAGTCCCGAGTCCCGACAAGTTCAGTTTATGA-CGATGGAATCAATCAAAGGAATATGGTTCGCACGGCTGAATCGCTGAACCACTCTGAAATCTG-AGGGCGTGTTTGCTTGCTGCCCTCAGATTCGCGCCCGGCTCATGCGTCGATCTCAGGCGTCCGATTTCGGTCGCCTGCGGTCGGATCGACCTGCCTGAGCAATGGTCTCCA-GGCGAGGGCAGCAACCAAACAG-CCCCTGAATACCTGGCTAGCTAAGGTTTCTGATCTATTCTGGCTGATCAGTGTCCA-TTTTCTTTCGTCCATAAGGCCGAGTGCAGAACAACTTGTATATATATATTTATGTGTTGATCTGGTAATTCAATGTAGTAG-CAAAGAGGCAATTGAGGATTCTGCACACACGCATCTACTGTAGCAGAATACTGATGTCTTTTATGTAATCCTGTCAAAGTTACTAGTAAAATTTTCTTTCAGAGAGGAAAA----AAAAAANAAAACTCGGCCGAA] [+] EMBL AK066367 [CTTAGCTTAGTGTTTACCTAGCTAGCTAGCAGCTGGCTGCAACAAACATTCTGCATGCACTTTGAATTCTAGAGATAGGAGAGTTAATTAGATAGCTTAGCTACCACAATGCATGCGTGCAACCTGATAGCTTAGCTACGCGTAGTTGCCAATTCAACCGGCCGACATATATATCGGCCTGAGGAAACTAGTGGAGGACTCCAAAGGGATCGCATTGATCTGGCTAGCTATCTCGATCGATCGCCTCATCGATCGACGACGACGTGCGTGATCGATCAGTGCAATCCCTTTGGAATTTTCCTCTTGCTTCCGCCTCCTCATCTTCCTTGATCGATCGATCCTTTGCCTGCTGGACGCGCTTGCCTGCCGGCTTGCTTCTTCCATCGCCGCCTTGATCAATCCGCAAGCTGCTCCAGATTCAGGAGTTAAATCGAAGCCCAACGCTAGCACACAGGTGTGTATCGTATACAATTACTGCATATGTATGCATGCTCCACATCAGTATATTGATCATCCCCGTATACAAGAAATGAACAACAGTAGGAGTAGTATTGAGTATTCTAGTGTTACTTTCTTTTACTTTGAGAACGAATTAATGGCATCTAATTTGTGTAAGCAAATTACTACTGGTTTCACTAGTCCTGAATTGTAGATGTAAGCTACTAGCTGTTAGACTATAAGAAGCCATTAATTAGTCGATAACAACATGCAATTGCATCTTGTCTTTATTTGACTATATATGTTGTTTTTTTCCAGTATGTATATGTTTAAAGCCCTATCGATCTAACTCTGAATATGCTAAGATAGAGTACAGAAAACATGATGCATATGCACCAGTACTGCTTGCAGGACTGTTCAGACATAATTTAATTTGTTATGCATCTGACCTGATCATCAAGTGGATTGATTGGTGATATATAAATGGTAACAAAAGTATAGTAGTGGAGAAGAAACGTGGAGAATTGGGTTTTACATTAAACTTTGCACGGTACAAGACATTAGACATCGATCGGTGCCTAAGCTAGTTGGAATTTTGCAATGATCTTCCCTTTTTCTGATCTTGCTTTTTGTGTGCATTAATTGTTCCGCTTGTTGCTTGAGAGTTGGAGTAGTACGCATCTCGATTGCAACTCATTTTGCGCGTGAATGAGTACCAATTTGGATTCGATCGTCATCGAGAAAGAGACAA GATACATATTTTTTGCGAACGCGTAAAAAAATAGCACGTCAATATATTAGAAGAAACTGATACATACTCCGTAGCTATCTTAATTTTATCTCTCCATCGCATGCAACTAAACTAATGTACTACTATATTTTCTCTTATCAAGAGAAAAGGAACACAAACGATCATTGCACAATATTTCCGGAACCCAAATAAGCTAGCTCTGTCAATGCTTATAAACGTACTCCTATATAAAATATATAGTTGATGATATGCCATGATGCATTATTGAACACAGTGATGTCTGCTGAAAGTGCATATTTGGCAGTGCAAGAAGGTCTTTTGACAGACAGGGTAAAACATATAGAGTCCCGAGTCCCGACAAGTTCAGTTTATGA CGATGGAATCAATCAAAGGAATATGGTTCGCACGGCTGAATCGCTGAACCACTCTGAAATCTG AGGGCGTGTTTGCTTGCTGCCCTCAGATTCGCGCCCGGCTCATGCGTCGATCTCAGGCGTCCGATTTCGGTCGCCTGCGGTCGGATCGACCTGCCTGAGCAATGGTCTCCA GGCGAGGGCAGCAACCAAACAG CCCCTGAATACCTGGCTAGCTAAGGTTTCTGATCTATTCTGGCTGATCAGTGTCCA TTTTCTTTCGTCCATAAGGCCGAGTGCAGAACAACTTGTATATATATATTTATGTGTTGATCTGGTAATTCAATGTAGTAG CAAAGAGGCAATTGAGGATTCTGCACACACGCATCTACTGTAGCAGAATACTGATGTCTTTTATGTAATCCTGTCAAAGTTACTAGTAAAATTTTCTTTCAGAGA ] [+] EMBL CB639509 [ GAGATACGAGAGGT ATGTGATAGCTTAGCTACCACAATGCATGCGTGCAACCTGATAGCTTAGCTACGCGTAGTTGCCAATTCAACCGGCCGACATATATATCGGCCTGAGGAAACTAGTGGAGGACTCCAAAGGGATCGCATTGATCTGGCTAGCTATCTCGATCGATCGCCTCATCGATCGACGACGACGTGCGTGATCGATCAGTGCAATCCCTTTGGAATTTTCCTCTTGCTTCCGCCTCCTCATCTTCCTTGATCGATCGATCCTTTGCCTGCTGGACGCGCTTGCCTGCCGGCTTGCTTCTTCCTTCGCCGCCTTGNTCGATCCG ] [-] EMBL CB668822 [ GAGAAAGAGACAAGGATCCATATTTTTTGCGAACGCGTAAAAAAATAGCACGTCAATATATTAGAAGAAACTGATACATACTCCGTAGCTATCTTAATTTTATCTCTCCATCGCATGCAACTAAACTAATGTACTACTATATTTTCTCTTATCAAGAGAAAAGGAACACAAACGATCATTGCACAATATTTCCGGAACCCAAATAAGCTAGCTCTGTCAATGCTTATAAACGTACTCCTATATAAAATATATAGTTGATGATATGCCATGATGCATTATTGAACACAGTGATGTCTGCTGAAAGTGCATATTTGGCAGTGCAAGAAGGTCTTTTGACAGACAGGGTAAAACATATAGAGTCCCGAGTCCCGACAAGTTCAGTTTATGA CGATGGAATCAATCAAAGGAATATGGTTCGCACGGCTGAATCGCTGAACCACTCTGAAATCTG AGGGCGTGTTTGCTTGCTGCCCTCAGATTCGCGCCCGGCTCATGCGTCGATCTCAGGCGTCCGATTTCGGTCGCCTGCGGTCGGATCGACCTGCCTGAGCAATGGTCTCCA GGCGAGGGCAGCAACCAAACAG CCCCTGAATACCTGGCTAGCTAAGGTTTCTGATCTATTCTGGCTGATCAGTGTCCA TTTTCTTTCGTCCATAAGGCCGAGTGCAGAACAACTTGTATATATATATTTATGTGTTGATCTGGTAATTCAATGTAGTAG CAAAGAGGCAATTGAG ] [+] EMBL BM038729 [ CCCGAGTCCCGACAAGTTCAGTTTATGACCGATGGAATCCATCCAAGGAATATGGTTCGCACGGCTGAATCGCTGAACCCCTCTGAAATCTGAAGGGCGTGTTTGCTTGCTGCCCTCGGATTCGCGCCTGGCTCAGGCGTCGATCTCAGGCGTCCGATTTCGGTCACCTGCGATCGGATCGACCTGCCTGAGCCATGGTCTCCACGGCGAGGGCAGCAACCCAACAGCCCCCTGAATACCTGGCTAGCTAAGGTTTCTGATCTCTTCTGGCTGATCAGTGTCCACTTTTCTTTCGTCCATAAGGCCGAGTGCAGAACAACTTG TATATATATTTATGTGTTGATCTGGTAATTCNATGTAGTAGCCCAAGAGGCCATTGAGGATTCTGCACACACGCATCTACTGTAGCAGAATACTGATGTCTTTTATGTAATCCTGTCCAAGTTACTAGTAAAATTTTCTTTCAGAGAGGAAAA AAAAAA ] [-] EMBL BE229637 [ TATTTANGTGTTGATCTGGTAATTCAATGTAGTAG CAAAGAGGCAATTGAGGATTCTGCACACACGCATCTACTGTAGCAGAATACTGATGTCTTTTATGTAATCCTGTCAAAGTTACTAGTAAAATTTTCTTTCAGAGAGGAAAATCTCAAAAAANAAAACTCGGCCGAA] consensusID : consensus_13945#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1088 fasta sequence [CACTTAGCTTAGTGTTTACCTAGCTAGCTAGCAGCTGGCTGCAACAAACATTCTGCATGCACTTTGAATTCTAGAGATAGGAGAGTTAATTAGATAGCTTAGCTACCACAATGCATGCGTGCAACCTGATAGCTTAGCTACGCGTAGTTGCCAATTCAACCGGCCGACATATATATCGGCCTGAGGAAACTAGTGGAGGACTCCAAAGGGATCGCATTGATCTGGCTAGCTATCTCGATCGATCGCCTCATCGATCGACGACGACGTGCATGATCGATCAGTGCAATCCCTTTGGAATTTTCCTCTTGCTTCCGCCTCCTCATCTTCCTTGATCGATCGATCCTTTGCCTGCTGGACGCGCTTGCCTGCCGGCTTGCTTCTTCCATCGCCGCCTTGATCAATCCGCAAGCTGCTCCAGATTCAGGAGTTAAATCGAAGCCCAACGCTAGCACACAGTGATGTCTGCTGAAAGTGCATATTTGGCAGTGCAAGAAGGTCTTTTGACAGACAGGGTAAAACATATAGAGTCCCGAGTCCCGACAAGTTCAGTTTATGACGATGGAATCAATCAAAGGAATATGGTTCGCACGGC-TGAATCGCTGAACCACTCTGAAATCTGAGGGCGTGTTTGCTTGCTGCCCTCAGATTCGCGCCCGGCTCATGCGTCGATCTCAGGCGTCCGATTTCGGTCGCCTGCGGTCGGATCGACCTGCCTGAGCAATGGTCTCCAGGCGAGGGCAGCAACCAAACAGCCCCTGAATACCTGGCTAGCTAAGGTTTCTGATCTATTCTGGCTGATCAGTGTCCATTTTCTTTCGTCCATAAGGCCGAGTGCAGAACAACTTGTATATATATATTTATGTGTTGATCTGGTAATTCAATGTAGTAGCAAAGAGGCAATTGAGGATTCTGCACACACGCATCTACTGTAGCAGAATACTGATGTCTTTTATGTAATCCTGTCAAAGTTACTAGTAAAATTTTCTTTCAGAGAGGAAAAACTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCACTGTCATGCCGTTACGTACCGTAT] [+] EMBL AK060126 [CACTTAGCTTAGTGTTTACCTAGCTAGCTAGCAGCTGGCTGCAACAAACATTCTGCATGCACTTTGAATTCTAGAGATAGGAGAGTTAATTAGATAGCTTAGCTACCACAATGCATGCGTGCAACCTGATAGCTTAGCTACGCGTAGTTGCCAATTCAACCGGCCGACATATATATCGGCCTGAGGAAACTAGTGGAGGACTCCAAAGGGATCGCATTGATCTGGCTAGCTATCTCGATCGATCGCCTCATCGATCGACGACGACGTGCATGATCGATCAGTGCAATCCCTTTGGAATTTTCCTCTTGCTTCCGCCTCCTCATCTTCCTTGATCGATCGATCCTTTGCCTGCTGGACGCGCTTGCCTGCCGGCTTGCTTCTTCCATCGCCGCCTTGATCAATCCGCAAGCTGCTCCAGATTCAGGAGTTAAATCGAAGCCCAACGCTAGCACACAGTGATGTCTGCTGAAAGTGCATATTTGGCAGTGCAAGAAGGTCTTTTGACAGACAGGGTAAAACATATAGAGTCCCGAGTCCCGACAAGTTCAGTTTATGACGATGGAATCAATCAAAGGAATATGGTTCGCACGGC TGAATCGCTGAACCACTCTGAAATCTGAGGGCGTGTTTGCTTGCTGCCCTCAGATTCGCGCCCGGCTCATGCGTCGATCTCAGGCGTCCGATTTCGGTCGCCTGCGGTCGGATCGACCTGCCTGAGCAATGGTCTCCAGGCGAGGGCAGCAACCAAACAGCCCCTGAATACCTGGCTAGCTAAGGTTTCTGATCTATTCTGGCTGATCAGTGTCCATTTTCTTTCGTCCATAAGGCCGAGTGCAGAACAACTTGTATATATATATTTATGTGTTGATCTGGTAATTCAATGTAGTAGCAAAGAGGCAATTGAGGATTCTGCACACACGCATCTACTGTAGCAGAATACTGATGTCTTTTATGTAATCCTGTCAAAGTTACTAGTAAAATTTTCT ] [+] EMBL CF280358 [ ATTC AGAGA AGGAGAGTTAATTAGAAAGCTTAGCTACCACAATGCATGCGTGCAACCTGATAGCTTA ] [+] EMBL C27765 [ TATCTCGATCGATCGCCTCATCGATCGACGACGACGTGCGTAATCGATCAGTGCAATCCCTTTGGAATTTTCCTCTTGCTTCCGCCTCCTCATCTTCCTTGATCGATCGATCCTTTGCCTGCTGGACGCGCTTGCCTGCCGGCTTGCTTCTTCCATCGCCGCCTTGATCAATCCGCAAGCTGCTCCAGATTCAGGAGTTAAATCGAAGCCCAACGCTAGCACACAGTGATGTCTGCTGAAAGTGCATATTTGGCAGTGCAAGAAGGTCTTTTGACAGACAGGGTAAAACATATAGAGTCCCGAGTCCCGACAAGTTCAGTTTATGACGATGGGATCAATCAAAGGAATATGGTTCG ACGGCTTGAATCGCTGAACCACTCTGAAATCTAGGGGCGTGTTT CTTTCNGCCCTNA ATTC ] [-] EMBL CF280357 [ CCTTGATCAATCCGCAAGCTGCTCCAGATTCAGGAGTTAAATCGAAGCCCAACGCTAGCACACAGTGATGTCTGCTGAAAGTGCATATTTGGCAGTGCAAGAAGGTCTTTTGACAGACAGGGTAAAACATATAGAGTCCCGAGTCCCGACAAGTTCAGTTTATGACGATGGAATCAATCAAAGGAATATGGTTCGCACGGC TGAATCGCTGAACCACTCTGAAATCTGAGGGCGTGTTTGCTTGCTGCCCTCAGATTCGCGCCCGGCTCATGCGTCGATCTCAGGCGTCCGATTTCGGTCGCCTGCGGTCGGATCGACCTGCCTGAGCAATGGTCTCCAGGCGAGGGCAGCAACCAAACAGCCCCTGAATACCTGGCTAGCTAAGGTTTCTGATCTATTCTGGCTGATCAGTGTCCATTTTCTTTCGTCCATAAGGCCGAGTGCAGAACAACTTGTATATATATATTTATGTGTTGATCTGGTAATTCAATGTAGTAGCAAAGAGGCAATTGAGGATTCTGCACACACGCATCTACTGTAGCAGAATACTGATGTCTTTTATGTAATCCTGTCAAAGTTACTAGTAAAATTTTCTTTCAGAGAGGAAAAA ] [+] EMBL CF332502 [ TGTAGCAGAATACTGATGTCTTTTATGTAATCCTGTC AAGTTACTAGTAAAATTTTCTTTCAGAGAGGAAAATCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCACTGTCATGCCGTTACGTACCGTAT] consensusID : consensus_13945#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 678 fasta sequence [CTTCCGCCTCCTCATGTTCCTTGATCGGATGACTCCTTTGCCTGCTGCACGCGCTTGCCTGCCGGCTTGCTTCTTCCATGCGCGCCTTGATCAATCCGCAAGCTGGCTCCAGATTCAGGAGTTAAATCGAAGCCCAACGCTAGCACACAGTGCAAGAAGGTCTTTTGACAGACAGGGTAAAACATATAGAGTCCCGAGTCCCGACAAGTTCAGTTTATGACGATGGAATCAATCAAAGGAATATGGTTCGCACGGCTGAATCGCTGAACCGCTCTGAAATCTGAGGGCGTGTTTGCTTGCTGCCCTCGGATTCGCGCCTGGCTCAGGGCGTCGATCTCAGACGTCCGATTCGGTCGCCTGCGGTCGGATCGACCTGCTTGAGCAATGGTCTCCAGGCGAGGGCAGCAACCAAAC-AGCCCCTGAATACCTGGCTAGCTAAGGTTTCTGATCTCTTCTGGCTGATCAGTGTCCATTTTCTTTCGTCCATAAGGCCGAGTGCAGAACAACTTGTATATATATTTATGTGTCGATCTGGTAATTCAATGTAGTAGCAAAGAGGCAATTGAGGATTCTGCACACACGCATCTACTGTAGCAGAATACTGATGTCTTTTATGTAATCCTGTCAAAGTTACTAGTAAAATTTTCTTTCAGAGAGGAAAATCTCAAAAAAAAAAAA] [-] EMBL CA760915 [CTTCCGCCTCCTCATGTTCCTTGATCGGATGACTCCTTTGCCTGCTGCACGCGCTTGCCTGCCGGCTTGCTTCTTCCATGCGCGCCTTGATCAATCCGCAAGCTGGCTCCAGATTCAGGAGTTAAATCGAAGCCCAACGCTAGCACACAGTGCAAGAAGGTCTTTTGACAGACAGGGTAAAACATATAGAGTCCCGAGTCCCGACAAGTTCAGTTTATGACGATGGAATCAATCAAAGGAATATGGTTCGCACGGCTGAATCGCTGAACCGCTCTGAAATCTGAGGGCGTGTTTGCTTGCTGCCCTCGGATTCGCGCCTGGCTCAGGGCGTCGATCTCAGACGTCCGATTCGGTCGCCTGCGGTCGGATCGACCTGCTTGAGCAATGGTCTCCAGGCGAGGGCAGCAACCAAAC AGCCCCTGAATACCTGGCTAGCTAAGGTTTCTGATCTCTTCTGGCTGATCAGTGTCCATTTTCTTTCGTCCATAAGGCCGAGTGCAGAACAACTTGTATATATATTTATGTGTCGATCTGGTAATTCAATGTAGTAGCAAAGAGGCAATTGAGGATTCTGCACACACGCATCTACTGTAGCAGAATACTGATGTCTTTTATGTAATCCTGTCAAAGTTACTAGTAAAATTTTCTTTCAGAGAGGAAAATCTCAAAAAAAAAAAA] [-] EMBL OSA309286 [ CGACCTGCCTGAGCAATGGTCTCCAGGCGAGAGCAGCAACCAAACAACCCCCTGAATACCTGGCTAGCTAAGGTTTCTGATCTCTTCTGGCTGATCAGTGTCCATTTTCTTT GTCCATAAGGCCGAGTGCAGAACAACTTGTATATATA TTA GTGTTGATCTGGTAATTCAATGTAGTAGCAAAGAGGCAATTGAGGATTCTGCACACACGCATCTACTGTAGCAGAATTCTGATGTCCTTTATGTAATCCTGTCAAAGTTACTAGTAAAATTTTCTTT ] consensusID : consensus_13945#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 625 fasta sequence [TGCGCCGCCCCGCGCGCTCCTCCCGGCCAGTCCCACCAGCGCGCGCCGCCCGCACGCCCATACGGCTCTCGTCGTCCCTCCGCCCGCCGCTCCATGTCGCCGTCCCCCTCATTGGCGCCGGCCTCTAGCGCGCGCCCGGGCTCACGCCCTATAGAGTGCGCCCCCCCGCGCCCGCGGCGCGCTTGCCCCCGCCCCCGCCCACCGACGCCGCTCCGGTGCCGCCCCGCCCTCCCGCCGACGCCCCTCCCCCAATCCGAGCGCGCGCCGCCCCCCGCCGGCCTCGCACTCGCCCCGTGGCCCAGCGCGTCGATTTCACCGCTCCCATTCGGTCGCCTCCGGTTGGATCGCCCTGCTTGAGCAATGGTCTCCAGGCGAGGGCAGCAACCAAACAGCCCCTGAATACCTGGCTAGCTAAGGTTTCTGATCTCTTCTGGCTGATCAGTGTCCATTTTCTTTGGTCCATAAGGCCGAGTGCAGAACAACTGGTATATATATTTATGTGTTGATCTGGTAATTCAATGTAGTAGCAAAGAGGCAATTGAGGATTCTGCACACACGCATCTACTGTAGCAGAATACTGATGTCTTTTATGTAATCCTGTCAAAGTTACTAGTAAAATTTTCTT] [-] EMBL CA761572 [TGCGCCGCCCCGCGCGCTCCTCCCGGCCAGTCCCACCAGCGCGCGCCGCCCGCACGCCCATACGGCTCTCGTCGTCCCTCCGCCCGCCGCTCCATGTCGCCGTCCCCCTCATTGGCGCCGGCCTCTAGCGCGCGCCCGGGCTCACGCCCTATAGAGTGCGCCCCCCCGCGCCCGCGGCGCGCTTGCCCCCGCCCCCGCCCACCGACGCCGCTCCGGTGCCGCCCCGCCCTCCCGCCGACGCCCCTCCCCCAATCCGAGCGCGCGCCGCCCCCCGCCGGCCTCGCACTCGCCCCGTGGCCCAGCGCGTCGATTTCACCGCTCCCATTCGGTCGCCTCCGGTTGGATCGCCCTGCTTGAGCAATGGTCTCCAGGCGAGGGCAGCAACCAAACAGCCCCTGAATACCTGGCTAGCTAAGGTTTCTGATCTCTTCTGGCTGATCAGTGTCCATTTTCTTTGGTCCATAAGGCCGAGTGCAGAACAACTGGTATATATATTTATGTGTTGATCTGGTAATTCAATGTAGTAGCAAAGAGGCAATTGAGGATTCTGCACACACGCATCTACTGTAGCAGAATACTGATGTCTTTTATGTAATCCTGTCAAAGTTACTAGTAAAATTTTCTT] consensusID : consensus_13945#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 581 fasta sequence [GGNAAANCCGGGGNAAATNNGAAAANAGGNNTTTNNGGGANGAAAAAATNGGCNANCNAGGGGGNTTTNTTAAAAAAAGGGGGAAAAAAANAGGGNTCCCGGATCCCAAAAAAATTAAGTTANGGGGGAGGGGANTCAAATCNAAGGGAAAAGGNTTCNNNNANGGGGGGGATTCGCAGGAGNCCNAAANNGGNATNGGGGGGGGGGGTTNGGTATGCNTNCCCTTNAGNNATCGNCNCCCGGGTTNANGGGTNGAAATNTCNGGGATTCGGATTTCGGTCCCCCTGCCGGTCGGATTNGGACTGCTNGACCAATGGTNTCCAGGNGGGGCAGCAAACCNAACAGCCCNNGAANACCTGGCTAGCTAAGGTTTCTGATCTATTCTGGCTGATCAGTGTCCATTTTCTTTCGTCCATAAGGCCGAGTGCAGAACAACTTGTATATATATATTTATGTGTTGATCTGGTAATTCAATGTAGTAGCAAAGAGGCAATTGAGGATTCTGCACACACGCATCTACTGTAGCAGAATACTGATGTCTTTTATGTAATCCTGTCAAAGTTACTAGTAAAATTTTCTTT] [-] EMBL BE229136 [GGNAAANCCGGGGNAAATNNGAAAANAGGNNTTTNNGGGANGAAAAAATNGGCNANCNAGGGGGNTTTNTTAAAAAAAGGGGGAAAAAAANAGGGNTCCCGGATCCCAAAAAAATTAAGTTANGGGGGAGGGGANTCAAATCNAAGGGAAAAGGNTTCNNNNANGGGGGGGATTCGCAGGAGNCCNAAANNGGNATNGGGGGGGGGGGTTNGGTATGCNTNCCCTTNAGNNATCGNCNCCCGGGTTNANGGGTNGAAATNTCNGGGATTCGGATTTCGGTCCCCCTGCCGGTCGGATTNGGACTGCTNGACCAATGGTNTCCAGGNGGGGCAGCAAACCNAACAGCCCNNGAANACCTGGCTAGCTAAGGTTTCTGATCTATTCTGGCTGATCAGTGTCCATTTTCTTTCGTCCATAAGGCCGAGTGCAGAACAACTTGTATATATATATTTATGTGTTGATCTGGTAATTCAATGTAGTAGCAAAGAGGCAATTGAGGATTCTGCACACACGCATCTACTGTAGCAGAATACTGATGTCTTTTATGTAATCCTGTCAAAGTTACTAGTAAAATTTTCTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13945#1 ------------------------------------------------------------ consensus_13945#2 ------------------------------------------------------------ consensus_13945#0 CTTAGCTTAGTGTTTACCTAGCTAGCTAGCAGCTGGCTGCAACAAACATTCTGCATGCAC 60 consensus_13945#4 ------------------------------------------------------------ consensus_13945#3 ------------------------------------------------------------ consensus_13945#1 ------------------------------------------------------------ consensus_13945#2 ------------------------------------------------------------ consensus_13945#0 TTTGAATTCTAGAGATAGGAGAGTTAATTAGATAGCTTAGCTACCACAATGCATGCGTGC 120 consensus_13945#4 ------------------------------------------------------------ consensus_13945#3 ------------------------------------------------------------ consensus_13945#1 ------------------------------------------------------------ consensus_13945#2 ------------------------------------------------------------ consensus_13945#0 AACCTGATAGCTTAGCTACGCGTAGTTGCCAATTCAACCGGCCGACATATATATCGGCCT 180 consensus_13945#4 ------------------------------------------------------------ consensus_13945#3 ------------------------------------------------------------ consensus_13945#1 ------------------------------------------------------------ consensus_13945#2 ------------------------------------------------------------ consensus_13945#0 GAGGAAACTAGTGGAGGACTCCAAAGGGATCGCATTGATCTGGCTAGCTATCTCGATCGA 240 consensus_13945#4 ------------------------------------------------------------ consensus_13945#3 ------------------------------------------------------------ consensus_13945#1 ------------------------------------------------------------ consensus_13945#2 ------------------------------------------------------------ consensus_13945#0 TCGCCTCATCGATCGACGACGACGTGCGTGATCGATCAGTGCAATCCCTTTGGAATTTTC 300 consensus_13945#4 ------------------------------------------------------------ consensus_13945#3 ------------------------------------------------------------ consensus_13945#1 ------------------------------------------------------------ consensus_13945#2 ------------------------------------------------------------ consensus_13945#0 CTCTTGCTTCCGCCTCCTCATCTTCCTTGATCGATCGATCCTTTGCCTGCTGGACGCGCT 360 consensus_13945#4 ------------------------------------------------------------ consensus_13945#3 ------------------------------------------------------------ consensus_13945#1 ------------------------------------------------------------ consensus_13945#2 ------------------------------------------------------------ consensus_13945#0 TGCCTGCCGGCTTGCTTCTTCCATCGCCGCCTTGATCAATCCGCAAGCTGCTCCAGATTC 420 consensus_13945#4 ------------------------------------------------------------ consensus_13945#3 ------------------------------------------------------------ consensus_13945#1 ------------------------------------------------------------ consensus_13945#2 ------------------------------------------------------------ consensus_13945#0 AGGAGTTAAATCGAAGCCCAACGCTAGCACACAGGTGTGTATCGTATACAATTACTGCAT 480 consensus_13945#4 ------------------------------------------------------------ consensus_13945#3 ------------------------------------------------------------ consensus_13945#1 ------------------------------------------------------------ consensus_13945#2 ------------------------------------------------------------ consensus_13945#0 ATGTATGCATGCTCCACATCAGTATATTGATCATCCCCGTATACAAGAAATGAACAACAG 540 consensus_13945#4 ------------------------------------------------------------ consensus_13945#3 ------------------------------------------------------------ consensus_13945#1 ------------------------------------------------------------ consensus_13945#2 ------------------------------------------------------------ consensus_13945#0 TAGGAGTAGTATTGAGTATTCTAGTGTTACTTTCTTTTACTTTGAGAACGAATTAATGGC 600 consensus_13945#4 ------------------------------------------------------------ consensus_13945#3 ------------------------------------------------------------ consensus_13945#1 ------------------------------------------------------------ consensus_13945#2 ------------------------------------------------------------ consensus_13945#0 ATCTAATTTGTGTAAGCAAATTACTACTGGTTTCACTAGTCCTGAATTGTAGATGTAAGC 660 consensus_13945#4 ------------------------------------------------------------ consensus_13945#3 ------------------------------------------------------------ consensus_13945#1 ------------------------------------------------------------ consensus_13945#2 ------------------------------------------------------------ consensus_13945#0 TACTAGCTGTTAGACTATAAGAAGCCATTAATTAGTCGATAACAACATGCAATTGCATCT 720 consensus_13945#4 ------------------------------------------------------------ consensus_13945#3 ------------------------------------------------------------ consensus_13945#1 ------------------------------------------------------------ consensus_13945#2 ------------------------------------------------------------ consensus_13945#0 TGTCTTTATTTGACTATATATGTTGTTTTTTTCCAGTATGTATATGTTTAAAGCCCTATC 780 consensus_13945#4 ------------------------------------------------------------ consensus_13945#3 ------------------------------------------------------------ consensus_13945#1 ------------------------------------------------------------ consensus_13945#2 ------------------------------------------------------------ consensus_13945#0 GATCTAACTCTGAATATGCTAAGATAGAGTACAGAAAACATGATGCATATGCACCAGTAC 840 consensus_13945#4 ------------------------------------------------------------ consensus_13945#3 ------------------------------------------------------------ consensus_13945#1 ------------------------------------------------------------ consensus_13945#2 ------------------------------------------------------------ consensus_13945#0 TGCTTGCAGGACTGTTCAGACATAATTTAATTTGTTATGCATCTGACCTGATCATCAAGT 900 consensus_13945#4 ------------------------------------------------------------ consensus_13945#3 ------------------------------------------------------------ consensus_13945#1 ------------------------------------------------------------ consensus_13945#2 ------------------------------------------------------------ consensus_13945#0 GGATTGATTGGTGATATATAAATGGTAACAAAAGTATAGTAGTGGAGAAGAAACGTGGAG 960 consensus_13945#4 ------------------------------------------------------------ consensus_13945#3 ------------------------------------------------------------ consensus_13945#1 --------------------------------------CACTTAGCTTAGTGTTTACCTA 22 consensus_13945#2 ------------------------------------------------------------ consensus_13945#0 AATTGGGTTTTACATTAAACTTTGCACGGTACAAGACATTAGACATCGATCGGTGCCTAA 1020 consensus_13945#4 ------------------------------------------------------------ consensus_13945#3 ------------------------------------------------------------ consensus_13945#1 GCTAGCTAGCAGCTGGCTGCAACAAACATTCTGCATGCACTTTGAATTCTAGAGATAGGA 82 consensus_13945#2 ------------------------------------------------------------ consensus_13945#0 GCTAGTTGGAATTTTGCAATGATCTTCCCTTTTTCTGATCTTGCTTTTTGTGTGCATTAA 1080 consensus_13945#4 ------------------------------------------------------------ consensus_13945#3 ------------------------------------------------------------ consensus_13945#1 GAGTTAATTAGATAGCTTAGCTACCACAAT-GCATGCGTGCAACCTGATAGCTTAGCTAC 141 consensus_13945#2 ------------------------------------------------------------ consensus_13945#0 TTGTTCCGCTTGTTGCTTGAGAGTTGGAGTAGTACGCATCTCGATTGCAACTCATTTTGC 1140 consensus_13945#4 ------------------------------------------------------------ consensus_13945#3 ------------------------------------------------------------ consensus_13945#1 GCGTAGTTGCCAATTCAACCGGCCGACATATATATCGGCCTGAGGAAACTAGTGGAGGAC 201 consensus_13945#2 ------------------------------------------------------------ consensus_13945#0 GCGTGAATGAGTACCAATTTGGATTCGATCGTCATCGAGAAAGAGACAAGATACATATTT 1200 consensus_13945#4 ------------------------------------------------------------ consensus_13945#3 ------------------------------------------------------------ consensus_13945#1 TCCAAAGGGATCGCATTGATCTGGCTAGCTATCTCGATCGATCGCCTCATCGATCGACGA 261 consensus_13945#2 ------------------------------------------------------------ consensus_13945#0 TTTGCGAACGCGTAAAAAAATAGCACGTCAATATATTAGAAGAAACTGATACATACTCCG 1260 consensus_13945#4 ------------------------------------------------------------ consensus_13945#3 ------------------------------------------------------------ consensus_13945#1 CGACGTGCATGATCGATCAGTGCAATCCCTTTGGAATTTTCCTCT-TGCTTCCGCCTCCT 320 consensus_13945#2 ------------------------------------------------CTTCCGCCTCCT 12 consensus_13945#0 TAGCTATCTTAATTTTATCTCTCCATCGCATGCAACTAAACTAATGTACTACTATATTTT 1320 consensus_13945#4 ------------------------------------------------------------ consensus_13945#3 ------------------------------------------------------------ consensus_13945#1 CATCTTCCTTGATCGATCGA--TCCTTTGCCTGCTGGACGCGCTTGCCTG----CCGGCT 374 consensus_13945#2 CATGTTCCTTGATCGGATGAC-TCCTTTGCCTGCTGCACGCGCTTGCCTG----CCGGCT 67 consensus_13945#0 CTCTTATCAAGAGAAAAGGAACACAAACGATCATTGCACAATATTTCCGGAACCCAAATA 1380 consensus_13945#4 ------------------------------------------------------------ consensus_13945#3 ----------------------------------------------TGCGCCGCCCCGCG 14 consensus_13945#1 TGCTTCTTCCATCGCCGCCTTGATCAATCCGCAAGCTG-CTCCAGATTCAGGAGTTAAAT 433 consensus_13945#2 TGCTTCTTCCATGCGCGCCTTGATCAATCCGCAAGCTGGCTCCAGATTCAGGAGTTAAAT 127 consensus_13945#0 AGCTAGCTCTGTCAATGCTTATAAACGTACTCCTATATAAAATATATAGTTGATGATATG 1440 consensus_13945#4 -----------------------------------------------------GGNAAAN 7 consensus_13945#3 CGCTCCTCCCGGCCAGTCCCACCAGCGCGCGCCGCCCGCACGCCCATACGGCTCTCGTCG 74 consensus_13945#1 CGAAGCCCAACGCTAGCACACAGTGATGTCTGCTGAAAGTGCATATTTGGCAGTGCAAGA 493 consensus_13945#2 CGAAGCCCAACGCTAGCACACAGTG------------------------------CAAGA 157 consensus_13945#0 CCATGATGCATTATTGAACACAGTGATGTCTGCTGAAAGTGCATATTTGGCAGTGCAAGA 1500 consensus_13945#4 CCGGGGNAAATNN--GAAAANAGGNNTTTN---NGGGANGAAAAAATNGGCNANCNAGGG 62 consensus_13945#3 TCCCTCCGCCCGCCGCTCCATGTCGCCGTCCCCCTCATTGGCG---CCGGC--CTCTAGC 129 * * consensus_13945#1 AGGTCTTTTGACAGACAGGGTAAAACATATAGAGTCCCGAGTCC-CGACAAGTTCAGTTT 552 consensus_13945#2 AGGTCTTTTGACAGACAGGGTAAAACATATAGAGTCCCGAGTCC-CGACAAGTTCAGTTT 216 consensus_13945#0 AGGTCTTTTGACAGACAGGGTAAAACATATAGAGTCCCGAGTCC-CGACAAGTTCAGTTT 1559 consensus_13945#4 GGNTTTNTTAAAAAAAGGGGGAAAAAAANAGGGNTCCCGGATCC-CAAAAAAATTAAGTT 121 consensus_13945#3 GCGCGCCCGGGCTCACGCCCTATAGAGTGCGCCCCCCCGCGCCCGCGGCGCGCTT-GCCC 188 * * * **** ** * * consensus_13945#1 ATGACGATGG--AATCAA--TCAAAGGAATATGGTTCGCAC----GGCTGAATCGCTGAA 604 consensus_13945#2 ATGACGATGG--AATCAA--TCAAAGGAATATGGTTCGCAC----GGCTGAATCGCTGAA 268 consensus_13945#0 ATGACGATGG--AATCAA--TCAAAGGAATATGGTTCGCAC----GGCTGAATCGCTGAA 1611 consensus_13945#4 ANGGGGGAGGGGANTCAAATCNAAGGGAAAAGGNTTCNNNNANGGGGGGGATTCGCAGGA 181 consensus_13945#3 CCGCCCCCGC----CCAC--CGACGCCGCTCCGGTGCCGCCC---CGCCCTCCCGCCGAC 239 * * ** * * * * * *** * consensus_13945#1 CCACT---CTGAAATCTGAGGG------CGTGTTTGCTTGCTGCCCTCAGATTCGCGCCC 655 consensus_13945#2 CCGCT---CTGAAATCTGAGGG------CGTGTTTGCTTGCTGCCCTCGGATTCGCGCCT 319 consensus_13945#0 CCACT---CTGAAATCTGAGGG------CGTGTTTGCTTGCTGCCCTCAGATTCGCGCCC 1662 consensus_13945#4 GNCCNAAANNGGNATNGGGGGGGGGGGTTNGGTATGCNTNCCCTTNAGNNATCGNCNCCC 241 consensus_13945#3 GCCCCTC-CCCCAATCCGAGCGCG----CGCCGCCCCCCGCCGGCCTCGCACTCGCCCCG 294 * ** * * * * * * * ** consensus_13945#1 GG-CTCATG-CGTCGA--TCTCAGGCGTCCG-ATTTCGGTCGCCTG--CGGTCGGAT-CG 707 consensus_13945#2 GG-CTCAGGGCGTCGA--TCTCAGACGTCCG-ATT-CGGTCGCCTG--CGGTCGGAT-CG 371 consensus_13945#0 GG-CTCATG-CGTCGA--TCTCAGGCGTCCG-ATTTCGGTCGCCTG--CGGTCGGAT-CG 1714 consensus_13945#4 GGGTTNANG-GGTNGAAATNTCNGGGATTCGGATTTCGGTCCCCCTGCCGGTCGGATTNG 300 consensus_13945#3 TGGCCCAGCGCGTCGA--TTTCACCGCTCCC-ATT-CGGTCGCCTC--CGGTTGGAT-CG 347 * * ** ** * ** * * *** ***** ** **** **** * consensus_13945#1 ACCTGCCTGAGCAATGGTCTCCAGGCGAGGGCAGCAA-CCAAACAGCCCCTGAATACCTG 766 consensus_13945#2 ACCTGCTTGAGCAATGGTCTCCAGGCGAGGGCAGCAA-CCAAACAGCCCCTGAATACCTG 430 consensus_13945#0 ACCTGCCTGAGCAATGGTCTCCAGGCGAGGGCAGCAA-CCAAACAGCCCCTGAATACCTG 1773 consensus_13945#4 GACTGCTNGACCAATGGTNTCCAGGNG-GGGCAGCAAACCNAACAGCCCNNGAANACCTG 359 consensus_13945#3 CCCTGCTTGAGCAATGGTCTCCAGGCGAGGGCAGCAA-CCAAACAGCCCCTGAATACCTG 406 **** ** ******* ****** * ********* ** ******** *** ***** consensus_13945#1 GCTAGCTAAGGTTTCTGATCTATTCTGGCTGATCAGTGTCCATTTTCTTTCGTCCATAAG 826 consensus_13945#2 GCTAGCTAAGGTTTCTGATCTCTTCTGGCTGATCAGTGTCCATTTTCTTTCGTCCATAAG 490 consensus_13945#0 GCTAGCTAAGGTTTCTGATCTATTCTGGCTGATCAGTGTCCATTTTCTTTCGTCCATAAG 1833 consensus_13945#4 GCTAGCTAAGGTTTCTGATCTATTCTGGCTGATCAGTGTCCATTTTCTTTCGTCCATAAG 419 consensus_13945#3 GCTAGCTAAGGTTTCTGATCTCTTCTGGCTGATCAGTGTCCATTTTCTTTGGTCCATAAG 466 ********************* **************************** ********* consensus_13945#1 GCCGAGTGCAGAACAACTTGTATATATATATTTATGTGTTGATCTGGTAATTCAATGTAG 886 consensus_13945#2 GCCGAGTGCAGAACAACTTGTATATATA--TTTATGTGTCGATCTGGTAATTCAATGTAG 548 consensus_13945#0 GCCGAGTGCAGAACAACTTGTATATATATATTTATGTGTTGATCTGGTAATTCAATGTAG 1893 consensus_13945#4 GCCGAGTGCAGAACAACTTGTATATATATATTTATGTGTTGATCTGGTAATTCAATGTAG 479 consensus_13945#3 GCCGAGTGCAGAACAACTGGTATATATA--TTTATGTGTTGATCTGGTAATTCAATGTAG 524 ****************** ********* ********* ******************** consensus_13945#1 TAGCAAAGAGGCAATTGAGGATTCTGCACACACGCATCTACTGTAGCAGAATACTGATGT 946 consensus_13945#2 TAGCAAAGAGGCAATTGAGGATTCTGCACACACGCATCTACTGTAGCAGAATACTGATGT 608 consensus_13945#0 TAGCAAAGAGGCAATTGAGGATTCTGCACACACGCATCTACTGTAGCAGAATACTGATGT 1953 consensus_13945#4 TAGCAAAGAGGCAATTGAGGATTCTGCACACACGCATCTACTGTAGCAGAATACTGATGT 539 consensus_13945#3 TAGCAAAGAGGCAATTGAGGATTCTGCACACACGCATCTACTGTAGCAGAATACTGATGT 584 ************************************************************ consensus_13945#1 CTTTTATGTAATCCTGTCAAAGTTACTAGTAAAATTTTCTTTCAGAGAGGAAAAACTCAA 1006 consensus_13945#2 CTTTTATGTAATCCTGTCAAAGTTACTAGTAAAATTTTCTTTCAGAGAGGAAAATCTCAA 668 consensus_13945#0 CTTTTATGTAATCCTGTCAAAGTTACTAGTAAAATTTTCTTTCAGAGAGGAAAAAAAAAA 2013 consensus_13945#4 CTTTTATGTAATCCTGTCAAAGTTACTAGTAAAATTTTCTTT------------------ 581 consensus_13945#3 CTTTTATGTAATCCTGTCAAAGTTACTAGTAAAATTTTCTT------------------- 625 ***************************************** consensus_13945#1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCACT 1066 consensus_13945#2 AAAAAAAAAA-------------------------------------------------- 678 consensus_13945#0 NAAAACTCGGCCGAA--------------------------------------------- 2028 consensus_13945#4 ------------------------------------------------------------ consensus_13945#3 ------------------------------------------------------------ consensus_13945#1 GTCATGCCGTTACGTACCGTAT 1088 consensus_13945#2 ---------------------- consensus_13945#0 ---------------------- consensus_13945#4 ---------------------- consensus_13945#3 ---------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||