cluster # 13946

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Oryza sativa
cluster # 13946 cluster # 13946 Sequences # 14 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_13946#0 length = 1406 sequences # 2
consensus_13946#1 length = 563 sequences # 10

consensus_13946#2 length = 559 sequences # 1
consensus_13946#3 length = 278 sequences # 1

consensusID : consensus_13946#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1406
fasta sequence

                              [TGGCGCCAAGGGAGCAGCCCAAGCTGAGTGAGCCATTCCTAGGGTTCACCAAGACTGCAGAGGTTTGGAACTCTAGGGCCTGCATGATTGGTCTCATTGGGGTTTTCATTGTGGAGCTGGTATGTATATATATGTAATTGTTGGTAATCCTTGTTTAAGTAATTAATATCAGGCTTGCTTTGCTTTTAAAAAGCACTTGTTAGGATGATTTGACTGTCTAATTAATTTCAGGTGCTGAGCAAGGGTGTTCTTCAGACAATTGGACTGGAAGTGGGGAAAGGACTCGATCTTCCACTGTAGTTCTTCAGGAATTTGTGGTTGATGTTCAGGGACTAGAGTGACCTGTTTTTCTCTTCAGAAAGATTGGATATGTCAATTAATGCTATGCACTAAATATGTACTCCTATATGCTAAGCCCCTTACATTCCGTTGTTATTTAGCATATTCTGTCGTTGCCACAGTAATCAACAAGATTTTCATCGCAAGATATTCCTAACGACGGTGAATTTGTGTTACAGATCAAACGGTTAGAACTTCTCGAGGTCATGTTCGATTAGCAATTTAGTAATTCAGATACTGCAGTTTCTTTGAGAAATTGTTTATCTGAAAATTCTTTATAAGTTTCTCAAGAATTGAACTGAATTTAATGTCTATTGTGTTCCTCCAAATTGAGATGAACTGCAGCAACTGAATTTTGGGATTTGCACCTGAACAAGCATTGTGCAGAATGACGGTACTCAACACTGTCGTGCAAATTGTTGTCGGTGCCGGTTGAGGGAAATGCCAATCATCAGTTGGCAGATGCACATAAAAGAATTCAGATTGACAAAGTTAAGCTCAATGTATCATGACAGCATAGGACTTGAGATAGATACCCTGGCACCATTTCAGAGCTACTGCAGGTACTTCCTTTTATCTTGTCGGAAGCCTTGTGCTTACTGGTAATAGCCTGTCTGTCATACAGTAGTAACTAGTAACTCATCTTGTCAAATCCAACAGTTGAATTGAGATAGTTGCTGAATAGCACTTTTGGGGCCACTGCATCAGTCATCAGTGTAATTCAGTAATTTGGTAACACATTGACTCATTGAGCTGCCATCTTTCTTTTCTTCACAGATAGAGAGAGATCTACAGAAATGCTCTACCCAGAGGACAGAATTAACTATGCAGTACCAGGATATGTGAAACTATGTTTTTCCTTTTGGAAACACACTTTTGGCCGTAGATTTTTCAGTTTTTCAAACTTATCTTGGGTCTCTGTATCTTCAATAGCATCAGTTTGTTGAACAATGTAGAGGTTGTTCTTTTGACTTTTGAGGCCTATAAGGAGGATTTCTTGATACCCAAATGGAATTTGCATAATCACAGCCAACCTGTCTCACTTCTACCTGCAAAAAAAAAAAAAG]

[+] EMBL CB630446             [TGGCGCCAAGGGAGCAGCCCAAGCTGAGTGAGCCATTCCTAGGGTTCACCAAGACTGCAGAGGTTTGGAACTCTAGGGCCTGCATGATTGGTCTCATTGGGGTTTTCATTGTGGAGCTGGTATGTATATATATGTAATTGTTGGTAATCCTTGTTTAAGTAATTAATATCAGGCTTGCTTTGCTTTTAAAAAGCACTTGTTAGGATGATTTGACTGTCTAATTAATTTCAGGTGCTGAGCAAGGGTGTTCTTCAGACAATTGGACTGGAAGTGGGGAAAGGACTCGATCTTCCACTGTAGTTCTTCAGGAATTTGTGGTTGATGTTCAGGGACTAGAGTGACCTGTTTTTCTCTTCAGAAAGATTGGATATGTCAATTAATGCTATGCACTAAATATGTACTCCTATATGCTAAGCCCCTTACATTCCGTTGTTATTTAGCATATTCTGTCGTTGCCACAGTAATCAACAAGATTTTCATCGCAAGATATTCCTAACGACGGTGAATTTGTGTTACAGATCAAACGGTTAGAACTTCTCGAGGTCATGTTCGATTAGCAATTTAGTAATTCAGATACTGCAGTTTCTTTGAGAAATTGTTTATCTGAAAATTCTTTATAAGTTTCTCAAGAATTGAACTGAATTTAATGTCTATTGTGTTCCTCCAAATTGAGATGAACTGCAGCAACTGAATTTTGGGATTTGCACCTGAACAAGCATTGTGCAGAATGACGGTACTCAACACTGTCGTGCAAATTGTTGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[-] EMBL CB630447             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GATGAACTGCAGCAACTGAATTTTGGGATTTGCACCTGAACAAGCATTGTGCAGAATGACGGTACTCAACACTGTCGTGCAAATTGTTGTCGGTGCCGGTTGAGGGAAATGCCAATCATCAGTTGGCAGATGCACATAAAAGAATTCAGATTGACAAAGTTAAGCTCAATGTATCATGACAGCATAGGACTTGAGATAGATACCCTGGCACCATTTCAGAGCTACTGCAGGTACTTCCTTTTATCTTGTCGGAAGCCTTGTGCTTACTGGTAATAGCCTGTCTGTCATACAGTAGTAACTAGTAACTCATCTTGTCAAATCCAACAGTTGAATTGAGATAGTTGCTGAATAGCACTTTTGGGGCCACTGCATCAGTCATCAGTGTAATTCAGTAATTTGGTAACACATTGACTCATTGAGCTGCCATCTTTCTTTTCTTCACAGATAGAGAGAGATCTACAGAAATGCTCTACCCAGAGGACAGAATTAACTATGCAGTACCAGGATATGTGAAACTATGTTTTTCCTTTTGGAAACACACTTTTGGCCGTAGATTTTTCAGTTTTTCAAACTTATCTTGGGTCTCTGTATCTTCAATAGCATCAGTTTGTTGAACAATGTAGAGGTTGTTCTTTTGACTTTTGAGGCCTATAAGGAGGATTTCTTGATACCCAAATGGAATTTGCATAATCACAGCCAACCTGTCTCACTTCTACCTGCAAAAAAAAAAAAAG]




>consensus_13946#0
TGGCGCCAAGGGAGCAGCCCAAGCTGAGTGAGCCATTCCTAGGGTTCACCAAGACTGCAG
AGGTTTGGAACTCTAGGGCCTGCATGATTGGTCTCATTGGGGTTTTCATTGTGGAGCTGG
TATGTATATATATGTAATTGTTGGTAATCCTTGTTTAAGTAATTAATATCAGGCTTGCTT
TGCTTTTAAAAAGCACTTGTTAGGATGATTTGACTGTCTAATTAATTTCAGGTGCTGAGC
AAGGGTGTTCTTCAGACAATTGGACTGGAAGTGGGGAAAGGACTCGATCTTCCACTGTAG
TTCTTCAGGAATTTGTGGTTGATGTTCAGGGACTAGAGTGACCTGTTTTTCTCTTCAGAA
AGATTGGATATGTCAATTAATGCTATGCACTAAATATGTACTCCTATATGCTAAGCCCCT
TACATTCCGTTGTTATTTAGCATATTCTGTCGTTGCCACAGTAATCAACAAGATTTTCAT
CGCAAGATATTCCTAACGACGGTGAATTTGTGTTACAGATCAAACGGTTAGAACTTCTCG
AGGTCATGTTCGATTAGCAATTTAGTAATTCAGATACTGCAGTTTCTTTGAGAAATTGTT
TATCTGAAAATTCTTTATAAGTTTCTCAAGAATTGAACTGAATTTAATGTCTATTGTGTT
CCTCCAAATTGAGATGAACTGCAGCAACTGAATTTTGGGATTTGCACCTGAACAAGCATT
GTGCAGAATGACGGTACTCAACACTGTCGTGCAAATTGTTGTCGGTGCCGGTTGAGGGAA
ATGCCAATCATCAGTTGGCAGATGCACATAAAAGAATTCAGATTGACAAAGTTAAGCTCA
ATGTATCATGACAGCATAGGACTTGAGATAGATACCCTGGCACCATTTCAGAGCTACTGC
AGGTACTTCCTTTTATCTTGTCGGAAGCCTTGTGCTTACTGGTAATAGCCTGTCTGTCAT
ACAGTAGTAACTAGTAACTCATCTTGTCAAATCCAACAGTTGAATTGAGATAGTTGCTGA
ATAGCACTTTTGGGGCCACTGCATCAGTCATCAGTGTAATTCAGTAATTTGGTAACACAT
TGACTCATTGAGCTGCCATCTTTCTTTTCTTCACAGATAGAGAGAGATCTACAGAAATGC
TCTACCCAGAGGACAGAATTAACTATGCAGTACCAGGATATGTGAAACTATGTTTTTCCT
TTTGGAAACACACTTTTGGCCGTAGATTTTTCAGTTTTTCAAACTTATCTTGGGTCTCTG
TATCTTCAATAGCATCAGTTTGTTGAACAATGTAGAGGTTGTTCTTTTGACTTTTGAGGC
CTATAAGGAGGATTTCTTGATACCCAAATGGAATTTGCATAATCACAGCCAACCTGTCTC
ACTTCTACCTGCAAAAAAAAAAAAAG

consensusID : consensus_13946#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 10
consensus length = 563
fasta sequence

                              [GCAGATTCAACCAAGCAATGACGTTATTAATCTCCATAGTTCAACCACCATCCCTCCTGGC-AATCCAATTCCAACCCCTCCAGAACAACAGATTCAAGAGGAATAATCCTGCCATCTCAGCAAGAGCAAGAACTGTCAGAGCTAGGGCAGCAGAGCTCCCAGCAGGAGTTGTGGTGCCAAGGGAGCAGCCCAAGCTGAGTGAGCCATTCCTAGGGTTCACCAAGACTGCAGAGGTTTGGAACTCTAGGGCCTGCATGATTGGTCTCATTGGGGTTTTCATTGTGGAGCTGGTGCTGAG-CAAGGGTGTTCTTCAGACAATTGGACTGGAAGTGGGGAAAGGACTCGATCTTCCACTGTAGTTCTTCAGGAATTTGTGGTTGATGTTCAGGGACTAGAGTGACCTGTTTTTCTCTTCAGAAAGATTGGATATGTCAATTAATGCTATGCACTAAATATGTACTCCTATATGCTAAGCCCCTTACATTCCGTTGTTATTTAGCATATTCTGTCGTTGCCACAGTAATCAACAAGATTTTCATCGCAAGATATTCCTAACGACGGTG]

[+] EMBL AK120556             [GCAGATTCAACCAAGCAATGACGTTATTAATCTCCATAGTTCAACCACCATCCCTCCTGGC AATCCAATTCCAACCCCTCCAGAACAACAGATTCAAGAGGAATAATCCTGCCATCTCAGCAAGAGCAAGAACTGTCAGAGCTAGGGCAGCAGAGCTCCCAGCAGGAGTTGTGGTGCCAAGGGAGCAGCCCAAGCTGAGTGAGCCATTCCTAGGGTTCACCAAGACTGCAGAGGTTTGGAACTCTAGGGCCTGCATGATTGGTCTCATTGGGGTTTTCATTGTGGAGCTGGTGCTGAG CAAGGGTGTTCTTCAGACAATTGGACTGGAAGTGGGGAAAGGACTCGATCTTCCACTGTAGTTCTTCAGGAATTTGTGGTTGATGTTCAGGGACTAGAGTGACCTGTTTTTCTCTTCAGAAAGATTGGATATGTCAATTAATGCTATGCACTAAATATGTACTCCTATATGCTAAGCCCCTTACATTCCGTTGTTATTTAGCATATTCTGTCGTTGCCACAGTAATCAACAAGATTTTCATCGCAAGATATTCCTAACGACGGTG]
[-] EMBL BU673760             [                     CGTTATTAATCTCCATAGTTCAACCACCATCCCTCCTGGC AATCCGATTCCAACCCCTCCAGAACAACAGATTCAAGAGGAATAATCCTGCCATCTCAGCAAGAGCAAGAACTGTCAGAGCTAGGGCAGCAGAGCTCCCAGCAGGAGTTGTGGTGCCAAGGGAGCAGCCCAAGCTGAGTGAGCCATTCCTAGGGTTCACCAAGACTGCAGAGGTTTGGAACTCTAGGGCCTGCATGATTGGTCTCATTGGGGTTTTCATTGTGGAGCTGGTGCTGAG CAAGGGTGTTCTTCAGACAATTGGACTGGAAGTGGGGAAAGGACTCGATCTTCCACTGTAGTTCTTCAGGAATTTGTGGTTGATGTTTAGGGACTAGAGTGACCTGTTTTTCTCTTCAGAAAGATTGGATATGTCAATTAATGCTATGCACTAAATATGTACTCCTATATGCTAAGCCCCTTACATTCCGTTGTTATTTAGCATATTCTGTCGTTGCCACAGTAATCAACAAGATTTTCATCGCAA                   ]
[-] EMBL BU673242             [                     CGTTATTAATCTCCATAGTTCAACCACCATCCCTCCTGGC AATCCAATTCCAACCCCTCCAGAACAACAGATTCAAGAGGAATAATCCTGCCATCTCAGCAAGAGCAAGAACTGTCAGAGCTAGGGCAGCAGAGCTCCCAGCAGGAGTTGTGGTGCCAAGGGAGCAGCCCAAGCTGAGTGAGCCATTCCTAGGGTTCACCAAGACTGCAGAGGTTTGGAACTCTAGGGCCTGCATGATTGGTCTCATTGGGGTTTTCATTGTGGAGCTGGTGCTGAG CAAGGGTGTTCTTCAGACAATTGGACTGGAAGTGGGGAAAGGACTCGATCTTCCACTGTAGTTCTTCAGGAATTTGTGGTTGATGTTCAGGGACTAGAGTGACCTGTTTTTCTCTTCAGAAAGATTGGATATGTCAATTAATGCTATGCACTAAATATGTACTCCTATATGCTAAGCCCCTTACATTCCGTTGTTATTTAGCATATTCTGTCGTTGCCACAGTAATCAACAAGATTTTCATCGCAA                   ]
[-] EMBL BU673329             [                     CGTTATTAATCTCCATAGTTCAACCACCATCCCTCCTGGC AATCCAATTCCAACCCCTCCAGAACAACAGATTCAAGAGGAATAATCCTGCCATCTCAGCAAGAGCAAGAACTGTCAGAGCTAGGGCAGCAGAGCTCCCAGCAGGAGTTGTGGTGCCAAGGGAGCAGCCCAAGCTGAGTGAGCCATTCCTAGGGTTCACCAAGACTGCAGAGGTTTGGAACTCTAGGGCCTGCATGATTGGTCTCATTGGGGTTTTCATTGTGGAGCTGGTGCTGAG CAAGGGTGTTCTTCAGACAATTGGACTGGAAGTGGGGAAAGGACTCGATCTTCCACTGTAGTTCTTCAGGAATTTGTGGTTGATGTTCAGGGACTAGAGTGACCTGTTTTTCTCTTCAGAAAGATTGGATATGTCAATTAATGCTATGCACTAAATATGTACTCCTATATGCTAAGCCCCTTACATTCCGTTGTTATTTAGCATATTCTGTCGTTGCCACAGTAATCAACAAGATTTTCATCGCAA                   ]
[-] EMBL CB966918             [                     CGTTATTAATCTCCATAGTTCAACCACCATCCCTCC GGCAAATCCAATTCCAACCCCTCCAGAACAACAGATTCAAGAGGAATAATCCTGCCATCTCAGCAAGAGCAAGAACTGTCAGAGCTAGGCCAGCAGAGCTCCCAGCAGGAGTTGTGGTGCCAAGGGAGCAGCCCAAGCTGAGTGAGCCATTCCTAGGGTTCACCAAGACTGCAGAGGTTTGGAACTCTAGGGCCTGCATGATTGGTCTCATTGGGGTTTTCATTGTGGAGCTGGTGCTGAGCCAAGGGTGTTCTTCAGACAATTGGACTGGAAGTGGGGAAAGGACTCGATCTTCCACTGTAGTTCTTCAGGAATTTGTGGTTGATGTTCAGGGACTAGAGTGACCTGTTTTTCTCTTCAGAAAGATTGGATATGTCAATTAATGCTATGCACTAAATATGTACTCCTATATGCTAAGCCCCTTACATTCCGTTGTTATTTAGCATATTCTGTCGTTGCCACAGTAATCAACAAGATTTTCATCGCA                    ]
[-] EMBL CB967092             [                     CGTTATTAATCTCCATAGTTCAACCACCATCCCTCCTGGC AATCCAATTCCAACCCCTCCAGAACAACAGATTCAAGAGGAATAATCCTGCCATCTCAGCAAGAGCAAGAACTGTCAGAGCTAGGGCAGCAGAGCTCCCAGCAGGAGTTGTGGTGCCAAGGGAGCAGCCCAAGCTGAGTGAGCCATTCCTAGGGTTCACCAAGACTGCAGAGGTTTGGAACTCTAGGGCCTGCATGATTGGTCTCATTGGGGTTTTCATTGTGGAGCTGGTGCTGAG CAAGGGTGTTCTTCAGACAATTGGACTGGAAGTGGGGAAAGGACTCGATCTTCCACTGTAGTTCTTCAGGAATTTGTGGTTGATGTTCAGGGACTAGAGTGACCTGTTTTTCTCTTCAGAAAGATTGGATATGTCAATTAATGCTATGCACTAAATATGTACTCCTATATGCTAAGCCCCTTACATTCCGTTGTTATTTAGCATATTCTGTCGTTGCCACAGTAATCAACAAGATTTTCATCGCA                    ]
[-] EMBL CB966917             [                     CGTTATTAATCTCCATAGTTCAACCACCATCCCTCCTGGC AATCCAATTCCAACCCCTCCAGAACAACAGATTCAAGAGGAATAATCCTGCCATCTCAGCAAGAGCAAGAACTGTCAGAGCTAGGGCAGCAGAGCTCCCAGCAGGAGTTGTGGTGCCAAGGGAGCAGCCCAAGCTGAGTGAGCCATTCCTAGGGTTCACCAAGACTGCAGAGGTTTGGAACTCTAGGGCCTGCATGATTGGTCTCATTGGGGTTTTCATTGTGGAGCTGGTGCTGAG CAAGGGTGTTCTTCAGACAATTGGACTGGAAGTGGGGAAAGGACTCGATCTTCCACTGTAGTTCTTCAGGAATTTGTGGTTGATGTTCAGGGACTAGAGTGACCTGTTTTTCTCTTCAGAAAGATTGGATATGTCAATTAATGCTATGCACTAAATATGTACTCCTATATGCTAAGCCCCTTACATTCCGTTGTTATTTAGCATATTCTGTCGTTGCCACAGTAATCAACAAGATTTTCATCGCA                    ]
[+] EMBL CB680168             [                                                                                           GATTCAACAGGAATAATCCTGCCATCTCAGCAAGAGCAAGAACTGTCAGAGCTAGGGCAGCAGAGCTCCCAGCAGGAGTTGTGGTGCCAAGGGAGCAGCCCAAGCTGAGTGAGCCATTCCTAGGGTTCACCAAGACTGCAGAGGTTTGGAACTCTAGGGCCTGCATGATTGGTCTCATTGGGGTTTTCATTGTGGAGCTGGTGCTGAG CAAGGGTGTTCTTCAGACAATTGGACTGGAAGTGGGGAAAGGACTCGATCTTCCACTGTAGTTCTTCAGGAATTTGTGGTTGATGTTCAGGGACTAGAGTGACCTGTTTTTCTCTTCAGAAAGATTGGATATGTCAATTAATGCTATGCACTAAAT                                                                                                             ]
[+] EMBL AW070069             [                                                                                                                                                                cggccgagGTTGTGGTGCCAAGGGAGCAGCCCAAGCTGAGTGAGCCATTCCTAGGGTCCACCAAGACTGCAGAGGTTTGGAGCTCTAGGGCCTGCATGATTGGTCTCATTGGGGTTTTCATTGTGGAGCTGGTGCTGAG CAAGGGTGTTCTTCAGACAATTGGACTGGAAGTGGGGAAAGGACTCGATCTTCCACTGTAGTTCTTCAGGAATTTGTGGTTGATGTTCAGGGACTAGAGTGACCTGTTTTTCTCTTCAGAAAGATNGGATATGTCAATTAATGCTATGCACTAAATATGTACctgc                                                                                                   ]
[+] EMBL AA751887             [                                                                                                                                                                                                                                                                                                                 agGTTCTTCCGACAATTGGACTGGAAGTGGGGAAAGGACTCGATCTTCCACTGTAGTTCTTCAGGAATTTGTGGTTGATGTTCAGGGACTAGAGTGACCTGTTTTTCTCTTCAGAAAGATTGGATATGTCAATTAATGCTATGCACTAAATAT                                                                                                           ]




>consensus_13946#1
GCAGATTCAACCAAGCAATGACGTTATTAATCTCCATAGTTCAACCACCATCCCTCCTGG
CAATCCAATTCCAACCCCTCCAGAACAACAGATTCAAGAGGAATAATCCTGCCATCTCAG
CAAGAGCAAGAACTGTCAGAGCTAGGGCAGCAGAGCTCCCAGCAGGAGTTGTGGTGCCAA
GGGAGCAGCCCAAGCTGAGTGAGCCATTCCTAGGGTTCACCAAGACTGCAGAGGTTTGGA
ACTCTAGGGCCTGCATGATTGGTCTCATTGGGGTTTTCATTGTGGAGCTGGTGCTGAGCA
AGGGTGTTCTTCAGACAATTGGACTGGAAGTGGGGAAAGGACTCGATCTTCCACTGTAGT
TCTTCAGGAATTTGTGGTTGATGTTCAGGGACTAGAGTGACCTGTTTTTCTCTTCAGAAA
GATTGGATATGTCAATTAATGCTATGCACTAAATATGTACTCCTATATGCTAAGCCCCTT
ACATTCCGTTGTTATTTAGCATATTCTGTCGTTGCCACAGTAATCAACAAGATTTTCATC
GCAAGATATTCCTAACGACGGTG

consensusID : consensus_13946#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 559
fasta sequence

                              [ATAGGCCCGAGGCAGAATCGGCACGAGGCAAGCAATGACGTATAAATCTCCATAGTTCAACCACCATCCCTCCTGGCAATCCAATTCCAACCCCTCCAGAACAACAGATTCAAGAGGAATAATCCTGCCATCTCAGCAAGAGCAAGAACGGTCAGAGCTAGGGCAGCAGAGCTCCCAGCAGGAGTTGTGGTGCCAAGGGAGCAGCCCAAGCTGAGTGAGCCATTCCTAGGGTTCACCAAGACTGCAGAGGTTTGGAACTCTAGGGCCTGCATGATGGGTCTCATGGGGGTTTTCATTGTGGAGCTGGTGCTGAGCAAGGGTGTTCTTCAGACAATGGGACTGGAAGTGGGGAAAGGACTCGATCTTCCACTGTAGTTCTTCAGGAATTGGTGGTTGATGTTCAGGGACTAGAGTGACCTGTTTTTCTCTTCAGAAAGATGGGATATGTCAATTAATGCTATGCACTAAATATGTACTCCTATATGCTAAGCCCCTTACATTCCGTTGTTATTTAGCATATTCTGTCGTTGCCACAGTAATCAACAAGATTTTCATCGCA]

[+] EMBL BU673915             [ATAGGCCCGAGGCAGAATCGGCACGAGGCAAGCAATGACGTATAAATCTCCATAGTTCAACCACCATCCCTCCTGGCAATCCAATTCCAACCCCTCCAGAACAACAGATTCAAGAGGAATAATCCTGCCATCTCAGCAAGAGCAAGAACGGTCAGAGCTAGGGCAGCAGAGCTCCCAGCAGGAGTTGTGGTGCCAAGGGAGCAGCCCAAGCTGAGTGAGCCATTCCTAGGGTTCACCAAGACTGCAGAGGTTTGGAACTCTAGGGCCTGCATGATGGGTCTCATGGGGGTTTTCATTGTGGAGCTGGTGCTGAGCAAGGGTGTTCTTCAGACAATGGGACTGGAAGTGGGGAAAGGACTCGATCTTCCACTGTAGTTCTTCAGGAATTGGTGGTTGATGTTCAGGGACTAGAGTGACCTGTTTTTCTCTTCAGAAAGATGGGATATGTCAATTAATGCTATGCACTAAATATGTACTCCTATATGCTAAGCCCCTTACATTCCGTTGTTATTTAGCATATTCTGTCGTTGCCACAGTAATCAACAAGATTTTCATCGCA]




>consensus_13946#2
ATAGGCCCGAGGCAGAATCGGCACGAGGCAAGCAATGACGTATAAATCTCCATAGTTCAA
CCACCATCCCTCCTGGCAATCCAATTCCAACCCCTCCAGAACAACAGATTCAAGAGGAAT
AATCCTGCCATCTCAGCAAGAGCAAGAACGGTCAGAGCTAGGGCAGCAGAGCTCCCAGCA
GGAGTTGTGGTGCCAAGGGAGCAGCCCAAGCTGAGTGAGCCATTCCTAGGGTTCACCAAG
ACTGCAGAGGTTTGGAACTCTAGGGCCTGCATGATGGGTCTCATGGGGGTTTTCATTGTG
GAGCTGGTGCTGAGCAAGGGTGTTCTTCAGACAATGGGACTGGAAGTGGGGAAAGGACTC
GATCTTCCACTGTAGTTCTTCAGGAATTGGTGGTTGATGTTCAGGGACTAGAGTGACCTG
TTTTTCTCTTCAGAAAGATGGGATATGTCAATTAATGCTATGCACTAAATATGTACTCCT
ATATGCTAAGCCCCTTACATTCCGTTGTTATTTAGCATATTCTGTCGTTGCCACAGTAAT
CAACAAGATTTTCATCGCA

consensusID : consensus_13946#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 278
fasta sequence

                              [AAGAGGAATAATCCTGCCATCTCAGCAAGAGCAAGAACTGTCAGAGCTAGGGCAGCAGAGCTCCCAGCAGGATAACCTCTGGTTTATGCCAAGGTTGTGGTGCCAAGGGAGCAGCCCAAGCTGAGTGAGCCATTCCTAGGGTTCACCAAGACTGCAGAGGTTTGGAACTCTAGGGCCTGCATGATTGGTCTCATTGGGGTTTTCATTGTGGAGCTGGTGCTGAGCAAGGGTGTTCTTCAGACAATTGGACTGGAAGTGGGGAAAGGACTCGATCTTCC]

[+] EMBL CA999448             [AAGAGGAATAATCCTGCCATCTCAGCAAGAGCAAGAACTGTCAGAGCTAGGGCAGCAGAGCTCCCAGCAGGATAACCTCTGGTTTATGCCAAGGTTGTGGTGCCAAGGGAGCAGCCCAAGCTGAGTGAGCCATTCCTAGGGTTCACCAAGACTGCAGAGGTTTGGAACTCTAGGGCCTGCATGATTGGTCTCATTGGGGTTTTCATTGTGGAGCTGGTGCTGAGCAAGGGTGTTCTTCAGACAATTGGACTGGAAGTGGGGAAAGGACTCGATCTTCC]




>consensus_13946#3
AAGAGGAATAATCCTGCCATCTCAGCAAGAGCAAGAACTGTCAGAGCTAGGGCAGCAGAG
CTCCCAGCAGGATAACCTCTGGTTTATGCCAAGGTTGTGGTGCCAAGGGAGCAGCCCAAG
CTGAGTGAGCCATTCCTAGGGTTCACCAAGACTGCAGAGGTTTGGAACTCTAGGGCCTGC
ATGATTGGTCTCATTGGGGTTTTCATTGTGGAGCTGGTGCTGAGCAAGGGTGTTCTTCAG
ACAATTGGACTGGAAGTGGGGAAAGGACTCGATCTTCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13946#2      ATAGGCCCGAGGCAGAATCGGCACGAGGCAAGCAATGACGT-ATAAATCTCCATAGTTCA 59
consensus_13946#3      ------------------------------------------------------------
consensus_13946#1      -----------------GCAGATTCAACCAAGCAATGACGTTATTAATCTCCATAGTTCA 43
consensus_13946#0      ------------------------------------------------------------
                                                                                   

consensus_13946#2      ACCACCATCCCTCCTGGCAATCCAATTCCAACCCCTCCAGAACAACAGATTCAAGAGGAA 119
consensus_13946#3      ----------------------------------------------------AAGAGGAA 8
consensus_13946#1      ACCACCATCCCTCCTGGCAATCCAATTCCAACCCCTCCAGAACAACAGATTCAAGAGGAA 103
consensus_13946#0      --------------------------------TGGCGCCAAGGGAGCAGCCCAAGCTGAG 28
                                                                           ***  ** 

consensus_13946#2      TAATCCTGCCATCTCAGCAAGAGCAAGAACGGTCAGAGCTAGGGCAGCAGAGCTCCCAGC 179
consensus_13946#3      TAATCCTGCCATCTCAGCAAGAGCAAGAACTGTCAGAGCTAGGGCAGCAGAGCTCCCAGC 68
consensus_13946#1      TAATCCTGCCATCTCAGCAAGAGCAAGAACTGTCAGAGCTAGGGCAGCAGAGCTCCCAGC 163
consensus_13946#0      TGAGCCATTC--CTAGGGTTCACCAAGACTGCAGAGGTTTGGAACTCTAGGGCCTGCATG 86
                       * * **   *  **  *    * *****      **   * *  *   ** **   **  

consensus_13946#2      AGGA---------------------GTTGTGGTGCCAAGGGAGCAGCCCAAGCTG--AGT 216
consensus_13946#3      AGGATAACCTCTGGTTTATGCCAAGGTTGTGGTGCCAAGGGAGCAGCCCAAGCTG--AGT 126
consensus_13946#1      AGGA---------------------GTTGTGGTGCCAAGGGAGCAGCCCAAGCTG--AGT 200
consensus_13946#0      ATTGGTCTCATTGGGGT-TTTCATTGTGGAGCTGGTATGTATATATATGTAATTGTTGGT 145
                       *                        ** * * **  * *     *     *  **   **

consensus_13946#2      GAGCCATTCCTAGGGTTCACCAAGACTGCAGAGGTTTGGAACTCTAGGGCCTGCATGATG 276
consensus_13946#3      GAGCCATTCCTAGGGTTCACCAAGACTGCAGAGGTTTGGAACTCTAGGGCCTGCATGATT 186
consensus_13946#1      GAGCCATTCCTAGGGTTCACCAAGACTGCAGAGGTTTGGAACTCTAGGGCCTGCATGATT 260
consensus_13946#0      AATCCTTGTTTAAG--TAATTAATATCAGGCTTGCTTTGC-TTTTAAAAAGCACTTG-TT 201
                        * ** *   ** *  * *  ** *        * ** *   * **       * ** * 

consensus_13946#2      GGTCTCATGGGGGTTTTCATTGTGGAGCTGGTGCTGAGCAAGGGTGTTCTTCAGACAATG 336
consensus_13946#3      GGTCTCATTGGGGTTTTCATTGTGGAGCTGGTGCTGAGCAAGGGTGTTCTTCAGACAATT 246
consensus_13946#1      GGTCTCATTGGGGTTTTCATTGTGGAGCTGGTGCTGAGCAAGGGTGTTCTTCAGACAATT 320
consensus_13946#0      AGGATGATTTGACTGTCTAATTAATTTCAGGTGCTGAGCAAGGGTGTTCTTCAGACAATT 261
                        *  * **  *  * *  * *      * ****************************** 

consensus_13946#2      GGACTGGAAGTGGGGAAAGGACTCGATCTTCCACTGTAGTTCTTCAGGAATTGGTGGTTG 396
consensus_13946#3      GGACTGGAAGTGGGGAAAGGACTCGATCTTCC---------------------------- 278
consensus_13946#1      GGACTGGAAGTGGGGAAAGGACTCGATCTTCCACTGTAGTTCTTCAGGAATTTGTGGTTG 380
consensus_13946#0      GGACTGGAAGTGGGGAAAGGACTCGATCTTCCACTGTAGTTCTTCAGGAATTTGTGGTTG 321
                       ********************************                            

consensus_13946#2      ATGTTCAGGGACTAGAGTGACCTGTTTTTCTCTTCAGAAAGATGGGATATGTCAATTAAT 456
consensus_13946#3      ------------------------------------------------------------
consensus_13946#1      ATGTTCAGGGACTAGAGTGACCTGTTTTTCTCTTCAGAAAGATTGGATATGTCAATTAAT 440
consensus_13946#0      ATGTTCAGGGACTAGAGTGACCTGTTTTTCTCTTCAGAAAGATTGGATATGTCAATTAAT 381
                                                                                   

consensus_13946#2      GCTATGCACTAAATATGTACTCCTATATGCTAAGCCCCTTACATTCCGTTGTTATTTAGC 516
consensus_13946#3      ------------------------------------------------------------
consensus_13946#1      GCTATGCACTAAATATGTACTCCTATATGCTAAGCCCCTTACATTCCGTTGTTATTTAGC 500
consensus_13946#0      GCTATGCACTAAATATGTACTCCTATATGCTAAGCCCCTTACATTCCGTTGTTATTTAGC 441
                                                                                   

consensus_13946#2      ATATTCTGTCGTTGCCACAGTAATCAACAAGATTTTCATCGCA----------------- 559
consensus_13946#3      ------------------------------------------------------------
consensus_13946#1      ATATTCTGTCGTTGCCACAGTAATCAACAAGATTTTCATCGCAAGATATTCCTAACGACG 560
consensus_13946#0      ATATTCTGTCGTTGCCACAGTAATCAACAAGATTTTCATCGCAAGATATTCCTAACGACG 501
                                                                                   

consensus_13946#2      ------------------------------------------------------------
consensus_13946#3      ------------------------------------------------------------
consensus_13946#1      GTG--------------------------------------------------------- 563
consensus_13946#0      GTGAATTTGTGTTACAGATCAAACGGTTAGAACTTCTCGAGGTCATGTTCGATTAGCAAT 561
                                                                                   

consensus_13946#2      ------------------------------------------------------------
consensus_13946#3      ------------------------------------------------------------
consensus_13946#1      ------------------------------------------------------------
consensus_13946#0      TTAGTAATTCAGATACTGCAGTTTCTTTGAGAAATTGTTTATCTGAAAATTCTTTATAAG 621
                                                                                   

consensus_13946#2      ------------------------------------------------------------
consensus_13946#3      ------------------------------------------------------------
consensus_13946#1      ------------------------------------------------------------
consensus_13946#0      TTTCTCAAGAATTGAACTGAATTTAATGTCTATTGTGTTCCTCCAAATTGAGATGAACTG 681
                                                                                   

consensus_13946#2      ------------------------------------------------------------
consensus_13946#3      ------------------------------------------------------------
consensus_13946#1      ------------------------------------------------------------
consensus_13946#0      CAGCAACTGAATTTTGGGATTTGCACCTGAACAAGCATTGTGCAGAATGACGGTACTCAA 741
                                                                                   

consensus_13946#2      ------------------------------------------------------------
consensus_13946#3      ------------------------------------------------------------
consensus_13946#1      ------------------------------------------------------------
consensus_13946#0      CACTGTCGTGCAAATTGTTGTCGGTGCCGGTTGAGGGAAATGCCAATCATCAGTTGGCAG 801
                                                                                   

consensus_13946#2      ------------------------------------------------------------
consensus_13946#3      ------------------------------------------------------------
consensus_13946#1      ------------------------------------------------------------
consensus_13946#0      ATGCACATAAAAGAATTCAGATTGACAAAGTTAAGCTCAATGTATCATGACAGCATAGGA 861
                                                                                   

consensus_13946#2      ------------------------------------------------------------
consensus_13946#3      ------------------------------------------------------------
consensus_13946#1      ------------------------------------------------------------
consensus_13946#0      CTTGAGATAGATACCCTGGCACCATTTCAGAGCTACTGCAGGTACTTCCTTTTATCTTGT 921
                                                                                   

consensus_13946#2      ------------------------------------------------------------
consensus_13946#3      ------------------------------------------------------------
consensus_13946#1      ------------------------------------------------------------
consensus_13946#0      CGGAAGCCTTGTGCTTACTGGTAATAGCCTGTCTGTCATACAGTAGTAACTAGTAACTCA 981
                                                                                   

consensus_13946#2      ------------------------------------------------------------
consensus_13946#3      ------------------------------------------------------------
consensus_13946#1      ------------------------------------------------------------
consensus_13946#0      TCTTGTCAAATCCAACAGTTGAATTGAGATAGTTGCTGAATAGCACTTTTGGGGCCACTG 1041
                                                                                   

consensus_13946#2      ------------------------------------------------------------
consensus_13946#3      ------------------------------------------------------------
consensus_13946#1      ------------------------------------------------------------
consensus_13946#0      CATCAGTCATCAGTGTAATTCAGTAATTTGGTAACACATTGACTCATTGAGCTGCCATCT 1101
                                                                                   

consensus_13946#2      ------------------------------------------------------------
consensus_13946#3      ------------------------------------------------------------
consensus_13946#1      ------------------------------------------------------------
consensus_13946#0      TTCTTTTCTTCACAGATAGAGAGAGATCTACAGAAATGCTCTACCCAGAGGACAGAATTA 1161
                                                                                   

consensus_13946#2      ------------------------------------------------------------
consensus_13946#3      ------------------------------------------------------------
consensus_13946#1      ------------------------------------------------------------
consensus_13946#0      ACTATGCAGTACCAGGATATGTGAAACTATGTTTTTCCTTTTGGAAACACACTTTTGGCC 1221
                                                                                   

consensus_13946#2      ------------------------------------------------------------
consensus_13946#3      ------------------------------------------------------------
consensus_13946#1      ------------------------------------------------------------
consensus_13946#0      GTAGATTTTTCAGTTTTTCAAACTTATCTTGGGTCTCTGTATCTTCAATAGCATCAGTTT 1281
                                                                                   

consensus_13946#2      ------------------------------------------------------------
consensus_13946#3      ------------------------------------------------------------
consensus_13946#1      ------------------------------------------------------------
consensus_13946#0      GTTGAACAATGTAGAGGTTGTTCTTTTGACTTTTGAGGCCTATAAGGAGGATTTCTTGAT 1341
                                                                                   

consensus_13946#2      ------------------------------------------------------------
consensus_13946#3      ------------------------------------------------------------
consensus_13946#1      ------------------------------------------------------------
consensus_13946#0      ACCCAAATGGAATTTGCATAATCACAGCCAACCTGTCTCACTTCTACCTGCAAAAAAAAA 1401
                                                                                   

consensus_13946#2      -----
consensus_13946#3      -----
consensus_13946#1      -----
consensus_13946#0      AAAAG 1406