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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13950#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 793 fasta sequence
[TGACTATGGGCACCAGGAAGCATCTAGTAAGTTTGGAAATGACCCAAGAACTTACGAAGTCCTGACCAAGCGTTTTATTGGTGATGAAAATGGAAACGTGAAGGCCCTTGAGGTGGTCCGGGTCAAGTGGGAGAAAGTCGATGGGAGATTCCAGTTCAAAGAAATTGAAGGCTCAAACGAGACCATTGAGGCTGATCTTGTCCTCCTAGCTATGGGGTT-CCTAGGCCCTGAAGCGACTATTG-CTGAGAAACTA-GGTTTGGAGAAAGACAACCGG-TCTAACTTCAAAGCTCAATTTGGAAACTTTG-CAACCAGTGT-GGATGGCATTTTTGCTGCCGGGGACTGCAGACGTGGACAATCACTTGTT-GTTTGGGCCATCACCGAGGGGCGGCAAGCTGCTGCAGCTGTCGACAAGTACTTGT-CAAGGAATGAACAAGATGCCGCAGAGGA-CATAA-CCCCCT-CGGGTGCAGGTTTTGTGCAGCCTGTTGCAG-CATAAATGAAACAGGCAAACTTTTCAAGACCAGTGCAATCTAAATTAGGATCAACGTTTTTAGTCTTTGATCACAGCAAGTTGTCTTTGAAAGATAAGGCCGGGCTCAATAGGGAAAAGAGAAGAGCCTTCTTATATTTTGGTAGATAAACAATTGGAAATTTTGGTGTGTTCTGC-TTGTTACTTTTCCAGTAAAATGATTTGCATGGTGAAATGC-CGTTTTGTAATCTGAATAATAATGTACAGTTGTTTTGGTTTAATTAATAGATGTAAATTTGTCTA--AAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CF311263 [TGACTATGGGCACCAGGAAGCATCTAGTAAGTTTGGAAATGACCCAAGAACTTACGAAGTCCTGACCAAGCGTTTTATTGGTGATGAAAATGGAAACGTGAAGGCCCTTGAGGTGGTCCGGGTCAAGTGGGAGAAAGTCGATGGGAGATTCCAGTTCAAAGAAATTGAAGGCTCAAACGAGACCATTGAGGCTGATCTTGTCCTCCTA CTATGGGGTT CCTAGGCCCTGAAGCGACTATTG CTGAGAAACTAGGGTTTGGAGAAAGACAACCGG TCTAACTTCAAAGCTCAATTTGGAAACTTTG CAACCAGTGTGGGATGGCATTTTTGCTGCCGGGGACTGCAGACGT ]
[-] EMBL CB642145 [ AAGCGTTTTATTGGTGATGAAAATGGAAACGTGAAGGCCCTTGAGGTGGTCCGGGTCAAGTGGGAGAAAGTCGATGGGAGATTCCAGTTCAAAGAAATTGAAGGCTCAAACGAGACCATTGAGGCTGATCTTGTCCTCCTAGCTATGGGGTT CCTAGGCCCTGAAGCGACTATTG CTGAGAAACTA GGTTTGGAGAAAGACAACCGG TCTAACTTCAAAGCTCAATTTGGAAACTTTG CAACCAGTGT GGATGGCATTTTTGCTGCCGGGGACTGCAGACGTGGACAATCACTTGTT GTTTGGGCCATCACCGAGGGGCGGCAAGCTGCTGCAGCTGTCGACAAGTACTTGT CAAGGAATGAACAAGATGCCGCAGAGGA CATAA CCCCCT CGGGTGCAGGTTTTGTGCAGCCTGTTGCAG CATAAATGAAACAGGCAAACTTTTCAAGACCAGTGCAATCTAAATTAGGATCAACGTTTTTAGTCTTTGATCACAGCAAGTTGTCTTTGAAAGATAAGGCCGGGCTCATTAGGGAAAAGAGAAGAGCCTTCTTATATTTTGGTAGATAAACAATTGGAAATTTTGGTGTGTTTTGCGTTGTTCCTTTTCCAGTAAAATGATTTGCATGGGGAGA GCTCGTTTagattt ]
[-] EMBL CA760007 [ aCAAGTGGGAGAAAGTCGATGGGAGATTCCAGTTCAAAGAAATTGAAGGCTCAAACGAGACCATTGAGGCTGATCTTGTCCTCCTAGCTATGGGGTT CCTAGGCCCTGAAGCGACTATTG CTGAGAAACTA GGTTTGGAGAAAGACAACCGGTTCTAACTTCAAAGCTCAATTTGGAAACTTTG CAACCAGTGT GGATGGCATTTTTGCTGCCGGGGACTGCAGACGTGGACAATCACTTGTT GTTTGGGCCATCACCGAGGGGCGGCAAGCTGCTGCAGCTGTCGACAAGTACTTGT CAAGGAATGAACAAGATGCCGCAGAGGA CATAA CCCCCT CGGGTGCAGGTTTTGTGCAGCCTGTTGCAG CATAAATGAAACAGGCAAACTTTTCAAGACCAG TAAATTAGGATCAACGTTTTTAGTCTTTGATCACAGCAAGTTGTCTTTGAAAGATAAGGCCGGGCTCAATAGGGAAAAGAGAAGAGCCTTCTTATATTTTGGTAGATAAACAATTGGAAATTTTGGTGTGTTCTGC CTGTTACTTTTACAGTAAAATGATTTGCATGGTGAAATGC CGTTTTGTAATCTGAATAATAATGCACAGTTGTTTTGGTTTAATTAATAGATGTAAATTTGTCTA AAAAAAAAA ]
[+] EMBL C98372 [ AAAGTCGATGGGAGATCCCAGTTCAAGGAAATTGAA GCTCANCCGGGCCCATTGAGNCTAATCTTGTCCCCCTAGCTATGGGGTTCCCTAGCCCCTGAAGCGACTATTGCCTGAGNAACTA GNTTTGGAGAAAGACAACCGN TCTAACTTCAAAGCTCAATTTGGAAACTTTG CAACCAGTGT GGATGGCATTTTTGCTCCCGGGGNCTGCAGCCNTGGACAATCACTTGTTGGTTTGGGCCATCACCGAGGGGCGGCAAGCTGCTGCAGCTGTCGACAAGTACTTGTCCAAGGAATGAACAAGATNCCGCAGAGGACCATAA CCCCCTCCGGGTGCAGGTTTTGTGCAGCCTGTTGCAG CATAAATGAAACAGGCAAACTTTTCAAGNCCAGTGCAATCTAAATTAGGATCAACGTTTTTAGTCTTTGATCACAGCAAGTTGTCTTTGAAAGATAAGGCCGGGCTCAATAGGGAAAAGAGAAGAGCCTTCTTATATTTTGGTAGATAAACAATTGGAAATTTTGGTGTGTTCTGC TTGTTACTTTTCCAGTAAAATGATTTGCATGGTGAAATGC CGTTTTGTAATCTGAATAATAATGTACAGTTGTTTTGGTTTAATTAATAGATGTAAATTTGTCTA AAAAAAAAAAAAAAAAAAAAAA ]
[+] EMBL CB096210 [ GAAATTGAAGGCTCAAACGAGACCATTGAGGCTGATCTTGTCCTCCTAGCTATGGGGTT CCTAGGCCCTGAAGCGACTATTG CTGAGAAACTA GGTTTGGAGAAAGACAACCGG TCTAACTTCAAAGCTCAATTTGGAAACTTTG CAACCAGTGT GGATGGCATTTTTGCTGCCGGGGACTGCAGACGTGGACAATCACTTGTT GTTTGGGCCATCACCGAGGGGCGGCAAGCTGCTGCAGCTGTCGACAAGTACTTGT CAAGGAATGAACAAGATGCCGCAGAGGA CATAA CCCCCT CGGGTGCAGGTTTTGTGCAGCCTGTTGCAG CATAAATGAAACAGGCAAACTTTTCAAGACCAG TAAATTAGGATCAACGTTTTTAGTCTTTGATCACAGC ]
[-] EMBL CF312101 [ CAATTTGGAAACTTCGCCAACCAGTGT GGATGGCATTTTTGCTGCCGGGGACTGCAGACGTGGACAATCACTTGTT GTTTGGGCCATCACCGAGGGGCGGCAAGCTGCTGCAGCTGTCGACAAGTACTTGT CAAGGAATGAACAAGATGCCGCAGAGGA CATAACCCCCCT CGGGTGCAGGTTTTGTGCAGCCTGTTGCAG CATAAATGAAACAGGCAAACTTTTCAAGACCAGTGCAATCTAAATTAGGATCAACGTTTTTAGTCTTTGATCACAGCAAGTTGTCTTTGAAAGATAAGGCCGGGCTCAATAGGGAAAAGAGAAGAGCCTTCTTATATTTTGGTAGATAAACAATTGGAAATTTTGGTGTGTTCTGC TTGTTACTTTTCCAGTAAAATGATTTGCATGGTGAAATGC TGTTTTGTAATCTGAATAATAATGTACAGTTGTTTTGGTTTAATTAATAGATGTAAATTTGTCTA TTAAAAAAAAAA ]
[+] EMBL BE040127 [ ATTTGGAAACTTTG CAACCAGTGT GGATGGCATTTTTGCTGCCGGGGACTGCAGACGTGGACAATCACTTGTT GTTTGGGCCATCACCGAGGGGCGGCAAGCTGCTGCAGCTGTCGACAAGTACTTGT CAAGGAATGAACAAGATGCCGCAGAGGA CATAA CCCCCT CGGGTGCAGGTTTTGTGCAGCCTGTTGCAG CATAAATGAAACAGGCAAACTTTTCAAGACCAG TAAATTAGGATCAACGTTTTTAGTCTTTGATCACAGCAAGTTGTCTTTGAAAGATAAGGCCGGGCTCAATAGGGAAAAGAGAAGAGCCTTCTTATATTTTGGTAGATAAACAATTGGAAATTTTGGTGTGTTCTGC TTGTTACTTTTACAGTAAAATGATTTGCATGGTGAAATGC CGTTTTGTAATCTGAATAATAATGTACAGTTGTTTTGGTTTAATTAATAGATGTAAATTTGTCTA TTAAAAAAAAAAAAAAAAAAAA ]
[+] EMBL OSS3205A [ AGTGT GGATGGCATTTTTGCTGCCGGGGACTGCAGACGTGGACAATCACTTGTT GTTTGGGCTATCACCGAGGGGCGGCAAGCTGCTGCAGCTGTCGACAAGTACTTGT CAAGGAATGAACAAGATGCCGCAGAGGA CATAA CCCCCT CGGGTGCAGGTTTTGTGCAGCCTGTTGCAG CATAAATGAAACAGGCAAACTTTTCAAGACCAGTGCAATCTAAATTAGGATCAACGTTTTTAGTCTTTGATCACAGCAAGTTGTCTTTGAAAGATAAGGCCGGGCTCAATA ]
[+] EMBL AU056626 [ GCTGCAGCTGTCGACAAGTACTTGT CAAGGAATGAACAAGATNCCGCAGAGGA CATAA CCCCCT CGGGTGCAGGTTTTGTGCAGCCTGTTGCAG CATAAATGAAACAGGCAAACTTTTCAAGACCAGTGCAATCTAAATTAGGATCAACGTTTTTAGTCTTTGATCACAGCAAGTTGTCTTTGAAAGATAAGGCCGGGCTCAATAGGGAAAAGAGAAGAGCCTTCTTATATTTTGGTAGATAAACAATTGGAAATTTTGGTGTGTTCTGC TTGTTACTTTTCCAGTAAAATGATTTGCATGGTGAAATGC CGTTTTGTAATCTGAATAATAATGTACAGTTGTTTTGGTTTAATTAATAGATGTAAATTTGTCTATTAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU097248 [ GTACTTGT CAAGGAATGAACAAGATGCCGCAGAGGA CATAA CCCCCT CGGGTGCAGGTTTTGTGCAGCCTGTTGCAGTCATAAATGAAACAGGCAAACTTTTCAAGACCAGTGCAATCTAAATTAGGATCAACGTTTTTAGTCTTTGATCACAGCAAGTTGTCTTTGAAAGATAAGGCCGGGCTCAATAGGGAAAAGAGAAGAGCCTTCTTATATTTTGGTAGATAAACAATTGGAAATTTTGGTGTGTTCTGC TTGTTACTTTTCCAGTAAAATGATTTGCATGGTGAAATGC CGTTTTGTAATCTGAATAATAATGTACAGTTGTTTTGGTTTAATTAATAGATGTAAATTTGTCTA AAAAAAA ]
[+] EMBL CB238489 [ ACTTGT CAAGGAATGAACAAGATGCCGCAGAGGA CATAA CCCCT CGGGTGCAGGTTTTGTGCAGCCTGTTGCAG CATAAATGAAACAGGCAAACTTTTCAAGACCAGTGCAATCTAAATTAGGATCAACG TTTTAGTCTTTGATCACAGCAAGTTGTCTTTGAAAGATAAGGCCGGGCTCAATAGGGAAAAGAGAAGAGCCTTCTTATATTTTGGTAGATAAACAATTGGAAATTTTGGTGTGTTCTGC TTGTTACTTTTCCAGTAAAATGATTTGCATGGTGAAATGC CGTTTTGTAATCTGAATAATAATGTACAGTTGT ]
[-] EMBL CB627672 [ GAATGAACAAGATGCCGCAGGGGA CATAA CCCCCT CGGGTGCAGGTTTTGTGCAGCCTGTTGCAG CATAAATGAAACAGGCAAACTTTTCAAGACCAGTGCAATCTAAATTAGGATCAACGTTTTTAGTCTTTGATCACAGCAAGTTGTCTTTGAAAGATAAGGCCGGGCTCAATAGGGAAAAGAGAAGAGCCTTCTTATATTTTGGTAGATAAACAATTGGAAATTTTGGTGTGTTCTGC TTGTTACTTTTACAGTAAAATGATTTGCATGGTGAAATGC CGTTTTGTAATCTGAATAATAATGTACAGTTGTTTTGGTTTAATTAATAGATGTA ]
[+] EMBL AU032385 [ cnCAGAGGA CATAA CCCCNT CGGGTGCAGGTTTTGTGCAGCCTGNTGCAG CATAAATGAAACAGGCAAACTTTTCAAGACCAGTGCAATCTAAATTAGGATCAACGTTTTTAGTCTTTGATCACAGCAAGTTGTCTTTGAAAGATAAGGCCGGGCTCAATAGGGAAAAGAGAAGNGCCTTCTTATATTTTGGTAGATAAACAATTGGAAATTTTGGTGTGTTNTGC TTGTTACTTTTCCAGTAAAATGATTTGCATGGTGAAATGC CGTTTTGTAATCTGAATAATAATGTACAGTTGTTTTGGTTTAATTAATAGATGTAAATTTGTCTA AAAAAAAAAAA ]
consensusID : consensus_13950#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 286 fasta sequence
[ACCCTGTTGCAGCATAAATTAAACAGGCAAACTTTTCAAGACCAGTGCAATTTAAATTAGGATCAACGTTTTAGTTTTTGATCACAGCAAGTTGTTTTTTAAAAATAAGGCCGGGCTCAATAGGGAAAAAAAAAGACCCTTTTTATATTTTGGTAAATAAACAATTGGAAATTTTGGGGTGTTCGGCTTGTTACTTTTCCAGTAAAATAATTTGCATGGTGAAAACCCGTTTTGTAATCTGAAAAAAAATGGACAGTTGTTTTGGTTTTAAAAAAAAAAAAAAAAA]
[-] EMBL CF311264 [ACCCTGTTGCAGCATAAATTAAACAGGCAAACTTTTCAAGACCAGTGCAATTTAAATTAGGATCAACGTTTTAGTTTTTGATCACAGCAAGTTGTTTTTTAAAAATAAGGCCGGGCTCAATAGGGAAAAAAAAAGACCCTTTTTATATTTTGGTAAATAAACAATTGGAAATTTTGGGGTGTTCGGCTTGTTACTTTTCCAGTAAAATAATTTGCATGGTGAAAACCCGTTTTGTAATCTGAAAAAAAATGGACAGTTGTTTTGGTTTTAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13950#0 TGACTATGGGCACCAGGAAGCATCTAGTAAGTTTGGAAATGACCCAAGAACTTACGAAGT 60
consensus_13950#1 ------------------------------------------------------------
consensus_13950#0 CCTGACCAAGCGTTTTATTGGTGATGAAAATGGAAACGTGAAGGCCCTTGAGGTGGTCCG 120
consensus_13950#1 ------------------------------------------------------------
consensus_13950#0 GGTCAAGTGGGAGAAAGTCGATGGGAGATTCCAGTTCAAAGAAATTGAAGGCTCAAACGA 180
consensus_13950#1 ------------------------------------------------------------
consensus_13950#0 GACCATTGAGGCTGATCTTGTCCTCCTAGCTATGGGGTTCCTAGGCCCTGAAGCGACTAT 240
consensus_13950#1 ------------------------------------------------------------
consensus_13950#0 TGCTGAGAAACTAGGTTTGGAGAAAGACAACCGGTCTAACTTCAAAGCTCAATTTGGAAA 300
consensus_13950#1 ------------------------------------------------------------
consensus_13950#0 CTTTGCAACCAGTGTGGATGGCATTTTTGCTGCCGGGGACTGCAGACGTGGACAATCACT 360
consensus_13950#1 ------------------------------------------------------------
consensus_13950#0 TGTTGTTTGGGCCATCACCGAGGGGCGGCAAGCTGCTGCAGCTGTCGACAAGTACTTGTC 420
consensus_13950#1 ------------------------------------------------------------
consensus_13950#0 AAGGAATGAACAAGATGCCGCAGAGGACATAACCCCCTCGGGTGCAGGTTTTGTGCAGCC 480
consensus_13950#1 --------------------------------------------------------ACCC 4
* **
consensus_13950#0 TGTTGCAGCATAAATGAAACAGGCAAACTTTTCAAGACCAGTGCAATCTAAATTAGGATC 540
consensus_13950#1 TGTTGCAGCATAAATTAAACAGGCAAACTTTTCAAGACCAGTGCAATTTAAATTAGGATC 64
*************** ******************************* ************
consensus_13950#0 AACGTTTTTAGTCTTTGATCACAGCAAGTTGTCTTTGAAAGATAAGGCCGGGCTCAATAG 600
consensus_13950#1 AACGTTTT-AGTTTTTGATCACAGCAAGTTGTTTTTTAAAAATAAGGCCGGGCTCAATAG 123
******** *** ******************* *** *** *******************
consensus_13950#0 GGAAAAGAGAAGAGCCTTCTTATATTTTGGTAGATAAACAATTGGAAATTTTGGTGTGTT 660
consensus_13950#1 GGAAAAAAAAAGACCCTTTTTATATTTTGGTAAATAAACAATTGGAAATTTTGGGGTGTT 183
****** * **** **** ************* ********************* *****
consensus_13950#0 CTGCTTGTTACTTTTCCAGTAAAATGATTTGCATGGTGAAATGCCGTTTTGTAATCTGAA 720
consensus_13950#1 CGGCTTGTTACTTTTCCAGTAAAATAATTTGCATGGTGAAAACCCGTTTTGTAATCTGAA 243
* *********************** *************** *****************
consensus_13950#0 TAATAATGTACAGTTGTTTTGGTTTAATTAATAGATGTAAATTTGTCTAAAAAAAAAAAA 780
consensus_13950#1 AAAAAATGGACAGTTGTTTTGGTTTTAAAAAAAAAAAAAAAAA----------------- 286
** **** **************** * ** * * ***
consensus_13950#0 AAAAAAAAAAAAA 793
consensus_13950#1 -------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||