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Oryza sativa
cluster # 1396 cluster # 1396       Sequences # 2       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1396#0 length = 1550 sequences # 2  

consensusID : consensus_1396#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1550
fasta sequence
                              [CTTCATTCTTGTTCTCCTCCCCCTCTCCTAACCCCTGCTTCAGCAAGGAGATGCTCACCTTCTCCACTTCATCCTCATCACAGCCACATTGCATTCGCAACCACTCCACCATCTCTCGCCGATGGAGCAGGCACGCGTTGGCTCAGCCATGATCTTCCTACTCCTCGCTTTCCTGTCAGAGGTTTCTGCATCCATATCGCAGCAGCAGCAGCAGCAATGCGGTGGTGCATCGTCTGCAGGAGTGAGAGCTGGCTTCTGGCTGCCATCCTCGAGCCACTACTCGCCTCTCGGCAGCATCGACACCTCGCTGTACAGCCATCTCTACTACAGCTCGCTCTCCATCGACGAGACCCGCTGCGCCGTCGCGCCGCCGTCCTCCGGTGAAGAGAGCTCCATTCTTTCCAATTTCTCGAGCAGCATCAAGTCCTCCGGTGGGGGTTTTCGCTGTCAAGACCATCTTGTCCATTGGCACGGATGAGTTCAGGGAGGATGTGTCCAATGCCGCCTTCTCCAGGATGGCCTCGGAGAAGAACCTTCGGAGAGCGTTCATCAACTCGTCGATCGAATTGGCTCGTGCCAATGGCTTCGATGGCCTCGACTTGGCGTGGAGGTTTCCCGCAACGCAGCTGGACATGGAGAACCTCGGAGATCTTCTCGCGGAATGGCGAGCCGAGATCATGGAGGATTCGACGACCAGATCGACCGAGCCTCTCCTGCTGACGGCTACTGTTTACTTCTCGAACCACCTGTTCGGCATGGCCGACACTAACCTCAACTACCCGATAGACGACATGTCGAGCAGCCTCGATTGGGTGAACATTATCACGTTCAGCCTGCACAAGAACAGCAACGTCACCACGGCTGACGCGCCTCTCTACGACAAGGATTCTCACTTCTCGGCTAGCTATGGTGTCATCTCGTGGCTGGATGCAGGGCTCCCTCCATGCAAGCTTGTGATGGGGATACCTCTGTTTGGAAGGTCTTGGTTCCTCAGAAACAAGGACAAGAACGGGCTAGGAGCACCAACTGCAGCTGCTGGAACAAAGCAGAGAAAGAGCAACCAGATCGGCGTAATCGCGTACGCAGAGATCGAAGAGTACCTGAAGTCTCAGAGTGTTTTTGTTACTCATGACAACCAGTCAGTGGCAGACTACTTCTACAGCGGTGATCTCTGGGTCAGCTTCGACAGTGCCGTGGTTGTGCAGGAGAAGGTGGAGTTTGTGGCGAAGTCTCAGTTGCTTGGGTACTTCCTCTCGACCATCAGCTTTGTTGACTCAAACTACACATTGTCCAAGCAAGCATCACAGTCCTGGAATCAATATCATGTTTCTTCATATGCGCAAGGTAGTTTTGGAATTATGCAAGAAGGAGCTATAATCCAAGATCTGCATGCATCAACAGGGTCACCAAGTAGTTGGTATTCAAAAACTCTCAGCTACTTGTTATTGTCAATAATACTTGTATTGGAGGTTCTATAATACCAAGAACAGCCGTAATTTGTAAACAGGCCAGATTGCACAAATAGTTTCAGATGATAAGGCTTATAACAC]

[+] EMBL AK102820             [CTTCATTCTTGTTCTCCTCCCCCTCTCCTAACCCCTGCTTCAGCAAGGAGATGCTCACCTTCTCCACTTCATCCTCATCACAGCCACATTGCATTCGCAACCACTCCACCATCTCTCGCCGATGGAGCAGGCACGCGTTGGCTCAGCCATGATCTTCCTACTCCTCGCTTTCCTGTCAGAGGTTTCTGCATCCATATCGCAGCAGCAGCAGCAGCAATGCGGTGGTGCATCGTCTGCAGGAGTGAGAGCTGGCTTCTGGCTGCCATCCTCGAGCCACTACTCGCCTCTCGGCAGCATCGACACCTCGCTGTACAGCCATCTCTACTACAGCTCGCTCTCCATCGACGAGACCCGCTGCGCCGTCGCGCCGCCGTCCTCCGGTGAAGAGAGCTCCATTCTTTCCAATTTCTCGAGCAGCATCAAGTCCTCCGGTGGGGGTTTTCGCTGTCAAGACCATCTTGTCCATTGGCACGGATGAGTTCAGGGAGGATGTGTCCAATGCCGCCTTCTCCAGGATGGCCTCGGAGAAGAACCTTCGGAGAGCGTTCATCAACTCGTCGATCGAATTGGCTCGTGCCAATGGCTTCGATGGCCTCGACTTGGCGTGGAGGTTTCCCGCAACGCAGCTGGACATGGAGAACCTCGGAGATCTTCTCGCGGAATGGCGAGCCGAGATCATGGAGGATTCGACGACCAGATCGACCGAGCCTCTCCTGCTGACGGCTACTGTTTACTTCTCGAACCACCTGTTCGGCATGGCCGACACTAACCTCAACTACCCGATAGACGACATGTCGAGCAGCCTCGATTGGGTGAACATTATCACGTTCAGCCTGCACAAGAACAGCAACGTCACCACGGCTGACGCGCCTCTCTACGACAAGGATTCTCACTTCTCGGCTAGCTATGGTGTCATCTCGTGGCTGGATGCAGGGCTCCCTCCATGCAAGCTTGTGATGGGGATACCTCTGTTTGGAAGGTCTTGGTTCCTCAGAAACAAGGACAAGAACGGGCTAGGAGCACCAACTGCAGCTGCTGGAACAAAGCAGAGAAAGAGCAACCAGATCGGCGTAATCGCGTACGCAGAGATCGAAGAGTACCTGAAGTCTCAGAGTGTTTTTGTTACTCATGACAACCAGTCAGTGGCAGACTACTTCTACAGCGGTGATCTCTGGGTCAGCTTCGACAGTGCCGTGGTTGTGCAGGAGAAGGTGGAGTTTGTGGCGAAGTCTCAGTTGCTTGGGTACTTCCTCTCGACCATCAGCTTTGTTGACTCAAACTACACATTGTCCAAGCAAGCATCACAGTCCTGGAATCAATATCATGTTTCTTCATATGCGCAAGGTAGTTTTGGAATTATGCAAGAAGGAGCTATAATCCAAGATCTGCATGCATCAACAGGGTCACCAAGTAGTTGGTATTCAAAAACTCTCAGCTACTTGTTATTGTCAATAATACTTGTATTGGAGGTTCTATAATACCAAGAACAGCCGTAATTTGTAAACAGGCCAGATTGCACAAATAGTTTCAGATGATAAGGCTTATAACAC]
[+] EMBL AK060376             [                                                  ATGCTCACCTTCTCCACTTCATCCTCATCACAGCCACATTGCATTCGCAACCACTCCACCATCTCTCGCCGATGGAGCAGGCACGCGTTGGCTCAGCCATGATCTTCCTACTCCTCGCTTTCCTGTCAGAGGTTTCTGCATCCATATCGCAGCAGCAGCAGCAGCAATGCGGTGGTGCATCGTCTGCAGGAGTGAGAGCTGGCTTCTGGCTGCCATCCTCGAGCCACTACTCGCCTCTCGGCAGCATCGACACCTCGCTGTACAGCCATCTCTACTACAGCTCGCTCTCCATCGACGAGACCCGCTGCGCCGTCGCGCCGCCGTCCTCCGGTGAAGAGAGCTCCATTCTTTCCAATTTCTCGAGCAGCATCAAGTCCTCCGGTGGGGG TTTCGCTGTCAAGACCATCTTGTCCATTGGCACGGATGAGTTCAGGGAGGATGTGTCCAATGCCGCCTTCTCCAGGATGGCCTCGGAGAAGAACCTTCGGAGAGCGTTCATCAACTCGTCGATCGAATTGGCTCGTGCCAATGGCTTCGATGGCCTCGACTTGGCGTGGAGGTTTCCCGCAACGCAGCTGGACATGGAGAACCTCGGAGATCTTCTCGCGGAATGGCGAGCCGAGATCATGGAGGATTCGACGACCAGATCGACCGAGCCTCTCCTGCTGACGGCTACTGTTTACTTCTCGAACCACCTGTTCGGCATGGCCGACACTAACCTCAACTACCCGATAGACGACATGTCGAGCAGCCTCGATTGGGTGAACATTATCACGTTCAGCCTGCACAAGAACAGCAACGTCACCACGGCTGACGCGCCTCTCTACGACAAGGATTCTCACTTCTCGGCTAGCTATGGTGTCATCTCGTGGCTGGATGCAGGGCTCCCTCCATGCAAGCTTGTGATGGGGATACCTCTGTTTGGAAGGTCTTGGTTCCTCAGAAACAAGGACAAGAACGGGCTAGGAGCACCAACTGCAGCTGCTGGAACAAAGCAGAGAAAGAGCAACCAGATCGGCGTAATCGCGTACGCAGAGATCGAAGAGTACCTGAAGTCTCAGAGTGTTTTTGTTACTCATGACAACCAGTCAGTGGCAGACTACTTCTACAGCGGTGATCTCTGGGTCAGCTTCGACAGTGCCGTGGTTGTGCAGGAGAAGGTGGAGTTTGTGGCGAAGTCTCAGTTGCTTGGGTACTTCCTCTCGACCATCAGCTTTGATGACTCAAACTACACATTGTCCAAGCAAGCATCACAGTCCTGGAATCAATATCATGTTTCTTCATATGCGCAAGGTAGTTTTGGAATTATGCAAGAAGGAGCTATAATCCAAGATCTGCATGCATCAACAGGGTCACCAAGTAGTTGGTATTCAAAAACTCTCAGCTACTTGTTATTGTCAATAATACTTGTATTGGAGGTTCTATAATACCAAGAACAGC                                                           ]


>consensus_1396#0 CTTCATTCTTGTTCTCCTCCCCCTCTCCTAACCCCTGCTTCAGCAAGGAGATGCTCACCT TCTCCACTTCATCCTCATCACAGCCACATTGCATTCGCAACCACTCCACCATCTCTCGCC GATGGAGCAGGCACGCGTTGGCTCAGCCATGATCTTCCTACTCCTCGCTTTCCTGTCAGA GGTTTCTGCATCCATATCGCAGCAGCAGCAGCAGCAATGCGGTGGTGCATCGTCTGCAGG AGTGAGAGCTGGCTTCTGGCTGCCATCCTCGAGCCACTACTCGCCTCTCGGCAGCATCGA CACCTCGCTGTACAGCCATCTCTACTACAGCTCGCTCTCCATCGACGAGACCCGCTGCGC CGTCGCGCCGCCGTCCTCCGGTGAAGAGAGCTCCATTCTTTCCAATTTCTCGAGCAGCAT CAAGTCCTCCGGTGGGGGTTTTCGCTGTCAAGACCATCTTGTCCATTGGCACGGATGAGT TCAGGGAGGATGTGTCCAATGCCGCCTTCTCCAGGATGGCCTCGGAGAAGAACCTTCGGA GAGCGTTCATCAACTCGTCGATCGAATTGGCTCGTGCCAATGGCTTCGATGGCCTCGACT TGGCGTGGAGGTTTCCCGCAACGCAGCTGGACATGGAGAACCTCGGAGATCTTCTCGCGG AATGGCGAGCCGAGATCATGGAGGATTCGACGACCAGATCGACCGAGCCTCTCCTGCTGA CGGCTACTGTTTACTTCTCGAACCACCTGTTCGGCATGGCCGACACTAACCTCAACTACC CGATAGACGACATGTCGAGCAGCCTCGATTGGGTGAACATTATCACGTTCAGCCTGCACA AGAACAGCAACGTCACCACGGCTGACGCGCCTCTCTACGACAAGGATTCTCACTTCTCGG CTAGCTATGGTGTCATCTCGTGGCTGGATGCAGGGCTCCCTCCATGCAAGCTTGTGATGG GGATACCTCTGTTTGGAAGGTCTTGGTTCCTCAGAAACAAGGACAAGAACGGGCTAGGAG CACCAACTGCAGCTGCTGGAACAAAGCAGAGAAAGAGCAACCAGATCGGCGTAATCGCGT ACGCAGAGATCGAAGAGTACCTGAAGTCTCAGAGTGTTTTTGTTACTCATGACAACCAGT CAGTGGCAGACTACTTCTACAGCGGTGATCTCTGGGTCAGCTTCGACAGTGCCGTGGTTG TGCAGGAGAAGGTGGAGTTTGTGGCGAAGTCTCAGTTGCTTGGGTACTTCCTCTCGACCA TCAGCTTTGTTGACTCAAACTACACATTGTCCAAGCAAGCATCACAGTCCTGGAATCAAT ATCATGTTTCTTCATATGCGCAAGGTAGTTTTGGAATTATGCAAGAAGGAGCTATAATCC AAGATCTGCATGCATCAACAGGGTCACCAAGTAGTTGGTATTCAAAAACTCTCAGCTACT TGTTATTGTCAATAATACTTGTATTGGAGGTTCTATAATACCAAGAACAGCCGTAATTTG TAAACAGGCCAGATTGCACAAATAGTTTCAGATGATAAGGCTTATAACAC



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)