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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13973#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 697 fasta sequence
[CCACACAATCAAGGCCCCCGCCGCACCTCCTCCCGTACTCCGGCGGCCTCGACCTCCTCACGGAGGCACTTGGGGCCGAGAGCTTCGATCCGGACGACGACGACGACGCCACCGCCGCCTCCCCCGCCATGGAGGACGTCGGCGCCGCCGTCGCCGCGGTCGACTTTCTGGCCCCGCCGTGCAAGAGGCCGCACCACGTCCTCCTCAGCAGCAGCAGCGAAGGCGTAGGCCACGACGACGACGACAACCAGCACGCCGTGATGGTGCTGAGGAGGACGAGGAGCGGGAGGGCGTTCCCGCCGCCGATATCGGTGATCGGCAAGGGCGGGCGGCCGTGGCTGAGCCTCCGGGCGCACCGGGAGGCCGGCCGGCTCGTGCTGCGGGAGATGCGGCTGCCGTCGCAGGAGTTGCTGCAGCCGTGCAAGGAGGACGGCAGGTTCAAGCTGCTCATCCACCCGGAGGCCGGCCGCCGTAGTGGCGGCGCCGGCG-CGGGGCCACGCGTAGGATCAGGAAGGGAAGGACACGGCGCCCTCGAGTCTTGATCAGTAGATCAGACAGAATTTTCCTTTTCTTTGGTCTTTAGAGCAC-CGTAAATTCTTCCTCTCCTTCCTGCGATAATGTGCATGATC-TTGCCGTTAATCAATACATGCATTGGC-TTGCAGCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AK120745 [CCACACAATCAAGGCCCCCGCCGCACCTCCTCCCGTACTCCGGCGGCCTCGACCTCCTCACGGAGGCACTTGGGGCCGAGAGCTTCGATCCGGACGACGACGACGACGCCACCGCCGCCTCCCCCGCCATGGAGGACGTCGGCGCCGCCGTCGCCGCGGTCGACTTTCTGGCCCCGCCGTGCAAGAGGCCGCACCACGTCCTCCTCAGCAGCAGCAGCGAAGGCGTAGGCCACGACGACGACGACAACCAGCACGCCGTGATGGTGCTGAGGAGGACGAGGAGCGGGAGGGCGTTCCCGCCGCCGATATCGGTGATCGGCAAGGGCGGGCGGCCGTGGCTGAGCCTCCGGGCGCACCGGGAGGCCGGCCGGCTCGTGCTGCGGGAGATGCGGCTGCCGTCGCAGGAGTTGCTGCAGCCGTGCAAGGAGGACGGCAGGTTCAAGCTGCTCATCCACCCGGAGGCCGGCCGCCGTAGTGGCGGCGCCGGCG CGGGGCCACGCGTAGGATCAGGAAGGGAAGGACACGGCGCCCTCGAGTCTTGATCAGTAGATCAGACAGAATTTTCCTTTTCTTTGGTCTTTAGAGCAC CGTAAATTCTTCCTCTCCTTCCTGCGATAATGTGCATGATC TTGCCGTTAATCAATACATGCATTGGC TTGCA ]
[+] EMBL BE230593 [ AGGCCCCCGCCGCACCTCCTCCCGTACTCCGGCGGCCTCGACCTCCTCACGGAGGCACTTGGGGCCGAGAGCTTCGATCCGGACGACGACGACGACGCCACCGCCGCCTCCCCCGCCATGGAGGACGTCGGCGCCGCCGTCGCCGCGGTCGACTTTCTGGCCCCGCCGTGCAAGAGGCCGCACCACGTCCTCCTCAGCAGCAGCAGCGAAGGCGTAGGCCACGACGACGACGACAACCAGCACGCCGTGATGGTGCTGAGGAGGACGAGGAGCGGGAGGGCGTTCCCGCCGCCGATATCGGTGATCGGCAAGGGCGGGCGGCCGTGGCTGAGCCTCCGGGCGCACCGGGAGGCCGG CGGCTCGTGCTGCGGGAGATGCGGCTGCCGTCGCAGGAGTTGCTGCAGCCGTGCAAGGAGGACGGCAGGTTCAAGCTGCTCATCCACCCGGAGGCCGGCCGCCGTAGTGGCGGCGCCGGCGCCGGGGCCACGCGTAGGATCAGGAAGGGAAGGACACGGCGCCCTCGAGTCTTGATCAGTAGATCAGACAGAATTTTCCTTTTCTTTGGTCTTTA AACAC CGTAAATTCTTCCT TTCTTCTTGCGATAATGTGCATGATCTTTGCCGTTAATCAATACATGCATTGGC TT ]
[+] EMBL BE230590 [ AGGCCCCCGCCGCACCTCCTCCCGTACTCCGGCGGCCTCGACCTCCTCACGGAGGCACTTGGGGCCGAGAGCTTCGATCCGGACGACGACGACGACGCCACCGCCGCCTCCCCCGCCATGGAGGACGTCGGCGCCGCCGTCGCCGCGGTCGACTTTCTGGCCCCGCCGTGCAAGAGGCCGCACCACGTCCTCCTCAGCAGCAGCAGCGAAGGCGTAGGCCACGACGACGACGACAACCAGCACGCCGTGATGGTGCTGAGGAGGACGAGGAGCGGGAGGGCGTTCCCGCCGCCGATATCGGTGATCGGCAAGGGCGGGCGGCCGTGGCTGAGCCTCCGGGCGCACCGGGAGGCCGG CGGCTCGTGCTGCGGGAGATGCGGCTGCCGTCGCAGGAGTTGCTGCAGCCGTGCAAGGAGGACGGCAGGTTCAAGCTGCTCATCCACCCGGAGGCCGGCCGCCGTAGTGGCGGCGCCGGCG C GGGCCACGCGTAGGATCAGGAAGGGAAGGACACGGCGCCCTCGAGTCTTGATCAGTAGATCAGACAGAATTTTCCTTTTCTTTGGTCTTTAGAGCAC CGTAAATTCTTCCTCT CTT CTGCGATAATGNGCATGATC TTGCCGNTAATCAATACATGCATTGGC ]
[+] EMBL BE230582 [ AGGCCCCCGCCGCACCTCCTCCCGTACTCCGGCGGCCTCGACCTCCTCACGGAGGCACTTGGGGCCGAGAGCTTCGATCCGGACGACGACGACGACGCCACCGCCGCCTCCCCCGCCATGGAGGACGTCGGCGCCGCCGTCGCCGCGGTCGACTTTCTGGCCCCGCCGTGCAAGAGGCCGCACCACGTCCTCCTCAGCAGCAGCAGCGAAGGCGTAGGCCACGACGACGACGACAACCAGCACGCCGTGATGGTGCTGAGGAGGACGAGGAGCGGGAGGGCGTTCCCGCCGCCGATATCGGTGATCGGCAAGGGCGGGCGGCCGTGGCTGAGCCTCCGGGCGCACCGGGAGGCCGGCCGGCTCGTGCTGCGGGAGATGCGGCTGCCGTCGCAGGAGTTGCTGCAGCCGTGCAAGGAGGACGGCAGGTTCAAGCTGCTCATCCACCCGGA GCCGG CGCCGTAGTGGCGGCGCCGGCT CG ]
[+] EMBL BE229925 [ AGGCCCCCGCCGCACCTCCTCCCGTACTCCGGCGGCCTCGACCTCCTCACGGAGGCACTTGGGGCCGAGAGCTTCGATCCGGACGACGACGACGACGCCACCGCCGCCTCCCCCGCCATGGAGGACGTCGGCGCCGCCGTCGCCGCGGTCGACTTTCTGGCCCCGCCGTGCAAGAGGCCGCACCACGTCCTCCTCAGCAGCAGCAGCGAAGGCGTAGGCCACGACGACGACGACAACCAGCACGCCGTGATGGTGCTGAGGAGGACGAGGAGCGGGAGGGCGTTCCCGCCGCCGATATCGGTGATCGGCAAGGGCGGGCGGCCGTGGCTGAGCCTCCGGGCGCACC ]
[+] EMBL AU101233 [ CGCACCTCCTCCCGTACTCCGGCGGCCTCGACCTCCTCACGGAGGCACTTGGGGCCGAGAGCTTCGATCCGGACGACGACGACGACGCCACCGCCGCCTCCCCCGCCATGGAGGACGTCGGCGCCGCCGTCGCCGCGGTCNANTTTTTGGCCCCGCCGTGCAAGAGGNCGCACCANGTCCTCCTCAGCAGCAGCAGCGAAGGCNTAGGCCACGACGACGACGACAACCAGCACGCCGTGATGGTGCTGAGGAGNACGAGGAGCGGGAGGNCGTTCCCGCCGNCGATATCGGTGATCGGt ]
[+] EMBL C73398 [ GCCGTGCAAGAGGNCGCACCANGTCCTNCTCAGCAGCAGCAGCGAAGGCGTAGGCCACGACGACGACGACAACCAGCACGCCGTGATGGTGCTGAGGAGGACGAGGAGCGGGAGGGCGTTCCCGCCGCCGATATCGGTNATCGGCAAGGGCGGGCGGCCGTGGCTGANCCTCCGGNCGCACCGGNAGGCCGGCCGGNTCGTNCTGCGGGANATGCGGCTGCCGTCGCA ]
[+] EMBL AU069858 [ GCGTTCCCGCCGCCGATATCGGTGATCGGCAAGGGCGGGCGGCCGTGGCTGAGCCTCCGGGCGCACCGGGAGGCCGGCCGGCTCGTGCTGCGGGAGATGCGGCTGCCGTCGCAGGAGTTGCTGCAGCCGTGCAAGGAGGACGGCAGGTTCAAGCTGCTCATCCACCCGGAGGCCGGCCGCCGTAGTGGCGGCGCCGGCG CGGGGCCACGCGTAGGATCAGGAAGGGAAGGACACGGCGCCCTCGAGTCTTGATCAGTAGATCAGACAGAATTTTCCTTTTCTTTGGTCTTTAGAGCAC CGTAAATTCTTCCTCTCCTTCCTGCGATAATGTGCATGATC TTGCCGTTAATCAATACATGCATTGGCTTTGCAGCTTAAAAAAAAAAAAAAAA ]
[+] EMBL AU165616 [ TCGGTGATCGGCAAGGGCGGGCGGCCGTGGCTGAGCCTCCGGGCGCACCGGGAGGCCGGCCGGNTCGTGCTGCGGGANATGCGGCTGCCGTCGCAGGANTTGCTGCAGCCGTGCAAGGAGGACGGCAGGTTCAAGCTGCTCATCCACCCGGAGGCCGGCCGCCGTAGTGGC GCGCCGGCG CGGGGCCACGCTTAGGATCAGGAAGGGAAGGACACGGCGCCCTCNAGTTTTGATCAGTAGATCANACAGAATTTTCCTTTTNTTTGGTCTTTAGAGCAC CGTAAATTCTTCCTCTCCTTCCTGCGATAATGTGCATGATC TTGCCGTTAATCAATACATGCATTGGC TTGCAaaaaa ]
[+] EMBL AU172655 [ CGGCAAGGGCGGGCGGCCGTGGTTNAGCCTCCGGGCGCACCGGGAGGCCGGCCGGCTNGTGCTGCGGGANATGCGGCTGCCGTCGCAGGAGTTGCTGCACCCGTGCAAGGAGGACGGCAGGTTCAAGCTGCTCATCCACCCGGAGGCCGGCCCCCGTAGTGGCGGCGCCGGCG CGGGGCCACGCGTAGGATCAGGAAGGGAAGGACNCGGCGCCCNCGAGTNTTGATCAGTAGATCAGACAGAATTTTCCTTTTCTTTGGTCTTTANAGCNCNGGTAAATTNTTCCTCTCCTTCCTGCGATAATGNGCATGATC TTGCCGTTAATCAANACATGCATTGGC TTGCAGCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA ]
[+] EMBL AU165613 [ CGTCGCAGGAGTTGCTGNAGCCGTGCAAGGAGGACGGCAGGTTCAAGCTGCTCATCCACCCGGAGGNCGGCCGCCGTAGTGGC GCGCCGGCG CGGGGCCACGCTTAGGNTCAGGAAGGGAAGGACACGGCGCCCTCGAGTNTTGATCAGTAGATCAGACAGANTTTNCCTTTTNTTTGGTCTTTAGAGCAC CGTAAATTCTTCCTCTCCTTCCTGCGATAATGTGCATGATC TTGCCGTTAATCAATACATGNATTGGC TTGCAGCTTAAAAAAA ]
[+] EMBL AU163682 [ CGTCGCAGGAGTTGCTGCAGCCGTGCAAGGAGGACGGCAGGTTCAAGCTGCTCATCCACCCGGAGGCCGGCCNCCGTAGTGGCGGCGCCGGCG CGGGGCCACGCGTAGGATCAGGAAGGGAAGGACNCGGCGCCCTCGAGTCTTGATCAGTAGATCAGACAGAATTTTCCTTTTCTTTGGTCTTTANAGCCC CGTAAATTCTTCCTCTCCTTCCTGCGATAATGTGCATGATC TTGCCGTTAATCAATACATGCATTGGC TTGCAGCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_13973#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 468 fasta sequence
[AGGCCCCCGCCGCACCTCCTCCCGTACTCCGGCGGCCTCGACCTCCTCACGGAGGCACTTGGGGCCGANAGCTTCGATCCGGACGACGACGACGACGCCACCGCCGCCTCCCCCGCCATGGACAGACCATCGGCGCCGCCGTCGCCGCGGTCGACTTTCTGGCCCCGCCGTGCAAGAGGCCGCACCACGTCCTCCTCAGCAGCAGCAGCGAAGGCGTAGGCCACGACGACGACGACAACCAGCACGCCGTGATGGTGCTGAGGAGGACGAGGAGCGGGAGGGCGTTCCCGCGCCGATATCGGTGATCGGCAAGGGCGGGCGGNCGAGGTTGAACCTTCGGTCGCACCAGCAGGCAAACATTTCATTGCTGAGTATGAGGCAGCTGCAGCCTACATGATTGTCAAGCCGTGCAAGGAGGACGGCAGGTTCAAGCTGCTCATCCACCCCGAGGCCGGCCGNCGTATTGGC]
[+] EMBL BE230354 [AGGCCCCCGCCGCACCTCCTCCCGTACTCCGGCGGCCTCGACCTCCTCACGGAGGCACTTGGGGCCGANAGCTTCGATCCGGACGACGACGACGACGCCACCGCCGCCTCCCCCGCCATGGACAGACCATCGGCGCCGCCGTCGCCGCGGTCGACTTTCTGGCCCCGCCGTGCAAGAGGCCGCACCACGTCCTCCTCAGCAGCAGCAGCGAAGGCGTAGGCCACGACGACGACGACAACCAGCACGCCGTGATGGTGCTGAGGAGGACGAGGAGCGGGAGGGCGTTCCCGCGCCGATATCGGTGATCGGCAAGGGCGGGCGGNCGAGGTTGAACCTTCGGTCGCACCAGCAGGCAAACATTTCATTGCTGAGTATGAGGCAGCTGCAGCCTACATGATTGTCAAGCCGTGCAAGGAGGACGGCAGGTTCAAGCTGCTCATCCACCCCGAGGCCGGCCGNCGTATTGGC]
consensusID : consensus_13973#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 369 fasta sequence
[CGCACCTNCTCCCGCACCACGTCCTCCTCAGCAGCAGCAGCGAAGGCGTAGGCCACGACGACGACGACAACCAGCACGCCGTGATGGTGCTGAGGAGGACGAGGAGCGGGAGGGCGTTCCCGCCGCCGATATCGGTGATCGGCAAGGGCGGGCGGCCGTGGCTGAGCCTCCGGGCGCACCGGGAGGCCGGCCGGCTCGTGCTGCGGGAGATGCGGCTGCCGTCGCAGGAGTTGCTGCAGNCGTGCAAGGAGGACGGCAGGTTCAAGCTGCTCATNCACCCGGAGTCNGCCGCCGTAGTGGCGCGNCGGCGTGGGGCCACGTGTAGGATCAGGAAGGGAAGGACACGGCGCCCTCGAGTCTTGATCAGTA]
[+] EMBL C93672 [CGCACCTNCTCCCGCACCACGTCCTCCTCAGCAGCAGCAGCGAAGGCGTAGGCCACGACGACGACGACAACCAGCACGCCGTGATGGTGCTGAGGAGGACGAGGAGCGGGAGGGCGTTCCCGCCGCCGATATCGGTGATCGGCAAGGGCGGGCGGCCGTGGCTGAGCCTCCGGGCGCACCGGGAGGCCGGCCGGCTCGTGCTGCGGGAGATGCGGCTGCCGTCGCAGGAGTTGCTGCAGNCGTGCAAGGAGGACGGCAGGTTCAAGCTGCTCATNCACCCGGAGTCNGCCGCCGTAGTGGCGCGNCGGCGTGGGGCCACGTGTAGGATCAGGAAGGGAAGGACACGGCGCCCTCGAGTCTTGATCAGTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13973#0 CCACACAATCAAGGCCCCCGCCGCACCTCCTCCCGTACTCCGGCGGCCTCGACCTCCTCA 60
consensus_13973#2 ------------------------------------------------------------
consensus_13973#1 ---------AGGCCCCCGCCGCACCTCCTCCCGTACTCCGGCGGCCTCGACCTCCTCACG 51
consensus_13973#0 CGGAGGCACTTGGGGCCGAGAGCTTCGATCCGGACGACGACGACGACGCCACCGCCGCCT 120
consensus_13973#2 ------------------------------------------------------------
consensus_13973#1 GAGGCACTTGGGGCCGANAGCTTCGATCCGGACGACGACGACGACGCCACCGCCGCCTCC 111
consensus_13973#0 CCCCCGCCATGGAGGACGTCGGCGCCGCCGTCGCCGCGGTCGACTTTCTGGCCCCGCCGT 180
consensus_13973#2 ---------------------------------------------------------CGC 3
consensus_13973#1 CCCGCCATGGACAGACCATCGGCGCCGCCGTCGCCGCGGTCGACTTTCTGGCCCCGCCGT 171
**
consensus_13973#0 GCAAGAGGCCGCACCACGTCCTCCTCAGCAGCAGCAGCGAAGGCGTAGGCCACGACGACG 240
consensus_13973#2 ACCTNCTCCCGCACCACGTCCTCCTCAGCAGCAGCAGCGAAGGCGTAGGCCACGACGACG 63
consensus_13973#1 GCAAGAGGCCGCACCACGTCCTCCTCAGCAGCAGCAGCGAAGGCGTAGGCCACGACGACG 231
* ****************************************************
consensus_13973#0 ACGACAACCAGCACGCCGTGATGGTGCTGAGGAGGACGAGGAGCGGGAGGGCGTTCCCGC 300
consensus_13973#2 ACGACAACCAGCACGCCGTGATGGTGCTGAGGAGGACGAGGAGCGGGAGGGCGTTCCCGC 123
consensus_13973#1 ACGACAACCAGCACGCCGTGATGGTGCTGAGGAGGACGAGGAGCGGGAGGGCGTTCCCGC 291
************************************************************
consensus_13973#0 CGCCGATATCGGTGATCGGCAAGGGCGGGCGGCCGTGGCTGAGCCTCCGGGCGCACCGGG 360
consensus_13973#2 CGCCGATATCGGTGATCGGCAAGGGCGGGCGGCCGTGGCTGAGCCTCCGGGCGCACCGGG 183
consensus_13973#1 -GCCGATATCGGTGATCGGCAAGGGCGGGCGGNCGAGGTTGAACCTTCGGTCGCACCAGC 350
******************************* ** ** *** *** *** ****** *
consensus_13973#0 AGGCCGGCCGGCTCGTGCTGCGGGAGATGCGGCTGCCGTCGCAGGAGTTGCTGCAGCCGT 420
consensus_13973#2 AGGCCGGCCGGCTCGTGCTGCGGGAGATGCGGCTGCCGTCGCAGGAGTTGCTGCAGNCGT 243
consensus_13973#1 AGGCAAACATTTCATTGCTGAGTATGAGGCAGCTGCAGCCTACATGATTGTCA-AGCCGT 409
**** * ***** * ** ** ***** * * *** ** ***
consensus_13973#0 GCAAGGAGGACGGCAGGTTCAAGCTGCTCATCCACCCGGAGGCCGGCCGCCGTAGTGGCG 480
consensus_13973#2 GCAAGGAGGACGGCAGGTTCAAGCTGCTCATNCACCCGGAG-TCNGCCGCCGTAGTGGCG 302
consensus_13973#1 GCAAGGAGGACGGCAGGTTCAAGCTGCTCATCCACCCCGAGGCCGGCCGNCGTATTGGC- 468
******************************* ***** *** * **** **** ****
consensus_13973#0 GCGCCGGCGCGGGGCCACGCGTAGGATCAGGAAGGGAAGGACACGGCGCCCTCGAGTCTT 540
consensus_13973#2 -CGNCGGCGTGGGGCCACGTGTAGGATCAGGAAGGGAAGGACACGGCGCCCTCGAGTCTT 361
consensus_13973#1 ------------------------------------------------------------
consensus_13973#0 GATCAGTAGATCAGACAGAATTTTCCTTTTCTTTGGTCTTTAGAGCACCGTAAATTCTTC 600
consensus_13973#2 GATCAGTA---------------------------------------------------- 369
consensus_13973#1 ------------------------------------------------------------
consensus_13973#0 CTCTCCTTCCTGCGATAATGTGCATGATCTTGCCGTTAATCAATACATGCATTGGCTTGC 660
consensus_13973#2 ------------------------------------------------------------
consensus_13973#1 ------------------------------------------------------------
consensus_13973#0 AGCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 697
consensus_13973#2 -------------------------------------
consensus_13973#1 -------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||