These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13983#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 960 fasta sequence [TTCCACGGGTGGAGAGGCAGCCAAGG-ATACGATAGCAAGGAAGAGAGAGCGTTGAAGATGCTGCTGACCACCCCGTTCGTGTCGTCCCCTGTGAGGG--TCCAGGGCAATGGGGG-CAGCGGCGCCTCGCCGTGGGCGGGCGCGGCGACGGCGCTGAGGATCCAGGCGGCGAAGCAGCTGACGGGGC-GTGTGGTGACGACGAAGGCGGACAAGACGGTGGGGGTGGAGGTGGTGCGGCTGGCTCCTCACCCAAAGTACAAGCGGCGGGAGCGCATCAAGAAGAAGTACCAGGCGCACGACCCGGACAACCAGTTCAAGGTCGGCGACGTCGTCGAGCTCCGCCGCTCCCGCCCCATCTCCAAGACCAAGCACTTCCTCGCCGTCCCCCTCCCCCCGCGCGACACCCGCCGCAAGTCCCAGCTCCTCCCGCCTCTCCAGTCCCAGTCCCAGTCCCAAGACCAGGACCAGCCACCCACGCCTCCTCCTTCCTCCGATTGATGGATTTTTCTTCTCCCGTAATCGTAAATTCGTAATGTAATAATCTGTGCTGTACTATGTACTCCATTGATTTTTATTTGCTCTGGATTTCGAACTTCCCCAGCAGCAATGCTATGTTCCCTTTTCATTTCATCTGCTCATATGCATGTTGTTACTCAGTGAAACCATACTACCAATATAATGCTACTAGAGTAGAATGTGCTTGTGTAATTCTGTTATCCTAGCCCCCATCCCATCGAAGAAATTATTTAGGGCTTCTATAGCATCGAAAGACTAAAAGAACTCAATAACCTTCGACTAGTGATACAACACCTCCGAACTACGTTCCCGGTCTTCAGCAAGCTTCCCGGTTTCATTGTGATGGTTCCTAATATGATTCGAGAATTTCAATTTGATATTTGTTTTAAACCATCCGGGAAACTTGTTTATACATGATACTGGTAGAATTCTACTAAAAAAAAAAAA] [+] EMBL AK059422 [TTCCACGGGTGGAGAGGCAGCCAAGG ATACGATAGCAAGGAAGAGAGAGCGTTGAAGATGCTGCTGACCACCCCGTTCGTGTCGTCCCCTGTGAGGG TCCAGGGCAATGGGGG CAGCGGCGCCTCGCCGTGGGCGGGCGCGGCGACGGCGCTGAGGATCCAGGCGGCGAAGCAGCTGACGGGGC GTGTGGTGACGACGAAGGCGGACAAGACGGTGGGGGTGGAGGTGGTGCGGCTGGCTCCTCACCCAAAGTACAAGCGGCGGGAGCGCATCAAGAAGAAGTACCAGGCGCACGACCCGGACAACCAGTTCAAGGTCGGCGACGTCGTCGAGCTCCGCCGCTCCCGCCCCATCTCCAAGACCAAGCACTTCCTCGCCGTCCCCCTCCCCCCGCGCGACACCCGCCGCAAGTCCCAGCTCCTCCCGCCTCTCCAGTCCCAGTCCCAGTCCCAAGACCAGGACCAGCCACCCACGCCTCCTCCTTCCTCCGATTGATGGATTTTTCTTCTCCCGTAATCGTAAATTCGTAATGTAATAATCTGTGCTGTACTATGTACTCCATTGATTTTTATTTGCT ] [+] EMBL BE229454 [ CGAGTGGAGAGGCAGCCAAGG ATACGATAGCAAGGAAGAGAGAGCGTTGAAGATGCTGCTGACCACCCCGTTCGTGTCGTCCCCTGTGAGGG TCCAGGGCAATGGGGG CAGCGGCGCCTCG CGTGGGCGGGCGCGGCGACGGCGCTGAGGATCCAGACGGCGAAG AGCTGACGGGGC GTGTGGTGACGACGAAGGCGGACAAGACGGTGGGGTTGGAGTTGGTGCGGCTGGCTCCTMACCCAAAGTACAGGSGGCGGGGGSMCATC ARNAGAAGTAC ] [+] EMBL AU222644 [ AGAGGCAGCCAAGGTATACGATAGCAAGGAAGAGAGAGCGTTGAAGATGCTGCTGACCACCCCGTTCGTGTCGTCCCCTGTGAGGG TCCAGGGCAATGGGGG CAGCGGCGCCTCGCCGTGGGCGGGCGCGGCGACGGCGCTGAGGATCCAGGCGGCGAAGCAGCTGACGGGGC GTGTGGTGACGACGAAGGCGGACAAGACGGTG ] [+] EMBL AF095707 [ GAGGCAGCCAAGG ATACGATAGCAAGGAAGAGAGAGCGTTGAAGATGCTGCTGACCACCCCGTTCGTGTCGTCCCCTGTGAGGG TCCAGGGCAATGGGGG CAGCGGCGCCTCGCCGTGGGCGGGCGCGGCGACGGCGCTGAGGATCCAGGCGGCGAAGCAGCTGACGGGGC GTGTGGTGACGACGAAGGCGGACAAGACGGTGGGGGTGGAGGTGGTGCGGCTGGCTCCTCACCCAAAGTACAAGCGGCGGGAGCGCATCAAGAAGAAGTACCAGGCGCACGACCCGGACAACCAGTTCAAGGTCGGCGACGTCGTCGAGCTCCGCCGCTCCCGCCCCATCTCCAAGACCAAGCACTTCCTCGCCGTCCCCCTCCCCCCGCGCGACACCCGCCGCAAGTCCCAGCTCCTCCCGCCTCTCCAGTCCCAGTCCCAGTCCCAAGACCAGGACCAGCCACCCACGCCTCCTCCTTCCTCCGATTGATGGATTTTTCTTCTCCCGTAATCGTAAATTCGTAATGTAATAATCTGTGCTGTACTATGTACTCCATTGATTTTTATTTGCTCTGGATTTCGAACTTCCCCAGCAGCAATGCTATGTTCCCTTTTCATTTCATCTGCTCATATGCATGTTGTTACTCAGTGAAACCATACTACCAATATAATGCTACTAGAGTAGAATGTGCTTGTGTAATTCTGTTATCCTAGCCCCCATCCCATCGAAGAAATTATTTAGGGCTTCTATAGCATCGAAAGACTAAAAGAACTCAATAACCTTCGACTAGTGATACAACACCTCCGAACTACGTTCCCGGTCTTCAGCAAGCTTCCCGGTTTCATTGTGATGGTTCCTAATATGATTCGAGAATTTCAATTTGATATTTGTTTTAAACCATCCGGGAAACTTGTTTATACATGATACTGGTAGAATTCTACTAAAAAAAAAAAA] [+] EMBL AK099298 [ GCAAGGAAGAGAGAGCGTTGAAGATGCTGCTGACCACCCCGTTCGTGTCGTCCCCTGTGAGGG TCCAGGGCAATGGGGG CAGCGGCGCCTCGCCGTGGGCGGGCGCGGCGACGGCGCTGAGGATCCAGGCGGCGAAGCAGCTGACGGGGC GTGTGGTGACGACGAAGGCGGACAAGACGGTGGGGGTGGAGGTGGTGCGGCTGGCTCCTCACCCAAAGTACAAGCGGCGGGAGCGCATCAAGAAGAAGTACCAGGCGCACGACCCGGACAACCAGTTCAAGGTCGGCGACGTCGTCGAGCTCCGCCGCTCCCGCCCCATCTCCAAGACCAAGCACTTCCTCGCCGTCCCCCTCCCCCCGCGCGACACCCGCCGCAAGTCCCAGCTCCTCCCGCCTCTCCAGTCCCAGTCCCAGTCCCAAGACCAGGACCAGCCACCCACGCCTCCTCCTTCCTCCGATTGATGGATTTTTCTTCTCCCGTAATCGTAAATTCGTAATGTAATAATCTGTGCTGTACTATGTACTCCATTGATTTTTATTTGCTCTGGATTTCGAACTTCCCCAGCAGCAATGCTATGTTCCCTTTTCATTTCATCTGCTCATATGCATGTTG ] [+] EMBL OSS16471A [ GAGCGTTGAAGATGCTGCTGACCACCCCGTTCGTGTCGTCCCCTGTGAGGG TCCAGGGCAATGGGGG CAGCGGCGCCTCGCCGTGGGCGGGCGCGGCGACGGCGCTGAGGATCCAGGCGGCGAAG AGCTGACGGGGC GTGTGGTGACGACGAAGGCGGACAAGACGGTGGGGGTGGAGGTGGTGCGGCTGGCTCCTCACCCAAAGTACAAGCGGCGGGAGCGCATCAAGAAGAAGTACCAGGCGCACGACCCGGACAACCAGTTCAAGGTCGGCGACGTCGTCGAGCTCCGCCGNTCCCGCCCCATCTNCAAGACCAAGNACTTCTTCGCCG ] [+] EMBL OSS13817A [ AGCGTTGAAGATGCTGCTGACCACCCCGTTCGTGTCGTCCCCTGTNAGGG TCCAGGGCAATGGGGG CAGCGGNGCCTCGCCGTGGGCGGGCGCGGCGACGGCGCTGAGGATCCAGGCGGCGAAG AGCTGACGGGGC GTNTGGTGACGACGAAGGCGGACAANACGGTGGGGGTGGAGGTGGTGCGGCTGGCTCCTCACCCAAAGTACAAGCGGCGGGAGCGCATCAAGAAGAAGTACCAGGCGCACGACCCGGACAACCAGTTCAAGGTCGGCGACGTCNTCGAGCTCCGCNGCTCCCGCCCCATCTCCAAGACCAAGCACTTCCTCGCCGTCCCCCTTCCCCCGNGCGACAACCGCng ] [+] EMBL OSS15386A [ TGAAGATGCTGCTGACCACCCCGTTCGTNTCGTCCCCTGTNAGGG TCCAGGGCAATGGGGG CAGCGGCGCCTCGCCGTGGGCGGGCGCGGCGACGGCGCTGAGGATCCAGGCGGCGAAG AGCTGACGGGGC GTNTGGTNACGACGAAGGCGGACAAGACGGTGGGGGTGGAGGTGGTGCNGCTGGCTCCTCACCCAAAGTACAAGCGGCGGGAGCTCATCAAGAAGAAGTACCANGCGCACGACCCGNACAACCANTTCAAGGTCGGCGACGTCNTCG ] [-] EMBL CB966539 [ ACCCCGTTCGTGTCGTCCCCTGTGAGGG TCCAGGCCAATGGGGC CAGCGGCGCCTCGCCGTGGCCGGGCCCGGCGACGGCGCTGAGGATCCAGGCGGCGAAGCAGCTGACGGGGC GTGTGGTGACGACGAAGGCGGACAAGACGGTGGGGGTGGAGGTGGTGCGGCTGGCTCCTCACCCAAAGTACAAGCGGCGGGAGCGCATCAAGAAGAAGTACCAGGCGCACGACCCGGACAACCAGTTCAAGGTCGGCGACGTCGTCGAGCTCCGCCGCTCCCGCCCCATCTCCAAGACCAAGCACTTCCTCGCCGTCCCCCTCCCCCCGCGCGACACCCGCCGCAAGTCCCAGCTCCTCCCGCCTCTCCAGTCCCAGTCCCAGTCCCAAGACCAGGACCAGCCACCCACGCCTCCTCCTTCCTCCGATTGATGGATTTTTCTTCTCC TAATCGT AATTC TAA GTAATAATCTGTGCTGTACTATGTACTC TTGA TTTTA TTGCTCTGG TTTCGA ] [+] EMBL BM037941 [ gtgGAGGGGTTCCAGGGGCATGGGGGTCAGCGGCGCCTC CCGT GGCGGGCGC GCGACGGC CTGAGGATCCAGGCGGCGAAGCAGCTGTCGGGGCTGTGTGGTGACGACGAAGGCGGACAAGACGGTGGGGGTGGAGGTGGTGCGGCTGGCTCCTCACCCAAAGTACAAGCGGCGGGAGCGCATCAAGAAGAAGTACCAGGCGCACGACCCGGACAACCAGTTCAAGGTCGGCGACGTCGTCGAGCTCCGCCGCTCCCGCCCCATCTCCAAGACCAAGCACTTCCTC CCGTCCCCCTCCCCCCGCGCGACACCCGCCGCAAGTCCCAGCTCCTCCCGCCTCTCCAGTCCCAGTCCCAGTCCCAAGACCAGGACCAGCCACCCACGCCTCCTCCTTCCTCCGATTGATGGATTTTTCTTCTCCCGTAATCGTAAATTCGTAATGTAATAATCTGTGCTGTACTATGTACTCCATTGATTTTTATTTGCTCTGGATTTCGAACTTCCCCAGCAGC ATGCTATGTTCCCTTTTCAaaaaaa ] [-] EMBL CB966417 [ CCCAAAGTACAAGCGGCGGGAGCGCATCAAGAAGAAGTACCAGGCGCACGACCCGGACAACCAGTTCAAGGTCGGCGACGTCGTCGAGCTCCGCCGCTCCCGCCCCATCTCCAAGACCAAGCACTTCCTCGCCGTCCCCCTCCCCCCGCGCGACACCCGCCGCAAGCCCCAGCTCCTCCCGCCTCTCCAGTCCCAGTCCCAGTCCCAAGACCAGGACCAGCCACCCACGCCTCCTCCTTCCTCCGATTGATGGATTTTTCTTCTCCCGTAATCGTAAATTCGTAATGTAATAATCTGTGCTGTACTATGTACTCCATTGATTTTTATTTGCTCTGGATTTCGAACTTCC ] [-] EMBL CB967257 [ CCCAAAGTACAAGCGGCGGGAGCGCATCAAGAAGAAGTACCAGGCGCACGACCCGGACAACCAGTTCAAGGTCGGCGACGTCGTCGAGCTCCGCCGCTCCCGCCCCATCTCCAAGACCAAGCACTTCCTCGCCGTCCCCCTCCCCCCGCGCGACACCCGCCGCAAGCCCCAGCTCCTCCCGCCTCTCCAGTCCCAGTCCCAGTCCCAAGACCAGGACCAGCCACCCACGCCTCCTCCTTCCTCCGATTGATGGATTTTTCTTCTCCCGTAATCGTAAATTCGTAATGTAATAATCTGTGCTGTACTATGTACTCCATTGATTTTTATTTGCTCTGGATTTCGAACTTC ] [+] EMBL AU031227 [ GCGACACCCGCCGCAAGTCCCAGCTCCTCCCGCCTCTCCAGTCCCAGTCCCAGTCCCAAGACCNGGNCCAGCCACCCACGCCTCCTCCTTCCTCCGATTGATGGATTTTTCTTCTCCCGTAATCGTAAATTCGTAATGTAATAATCTGTGCTGTACTATGTANTCCATTGATTTTTATTTGCTCTGGATTTCGAACTTCCCCNGCAGCAATGCTATGTTCCCTTTTCATTTCATCTGCTCATATGCATGTTGTTACTCAGTGAAACCATACTACCAATATAATNNTNNTNGNGTAAAAaaaaa ] consensusID : consensus_13983#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 567 fasta sequence [GGNANAGNNNGNGGNCGAAGGGGNAAGAGGGGNNGGGGAGANGAAGAAGGGGGAGGAGAGAGGGGGGNANGAGGAGGGAGGNAGAAAAGANGNAAGGGGGGNNNNAGAANNANGNGAGGGGGGGNGNNNNANNNAGGAGANAANNNNAGAGAGGGGGAGAGGTAANAGAGACNANCGGAAGNNGNGAAANGGGCNAANGGGAGNAGGAGGGGGANGGNNNGAGGGNAGAGNANATCCCCCCCNGGGGGNCGCCGCAAGTCCCAGCTCCTCCCGCNTCTCCAGTCCCAGTCCCAGTCCCAAGACCAGGACCAGCCACCCACGCNTCCTCCTTCCTCCNGTTGATGGATTTTTCTTCTCCCGTAATCGTAAATTCGTAATGTAATAATCTGTGCTGTACTATGTACTCCATTGATTTTTATTTGCTCTGGATTTCGAACTTCCCCAGCAGCAATGCTATGTTCCCTTTTCATTTCATCTGCTCATATGCATGTTGTTACTCAGTGAAACCATACTACCAATATAATGCTACTAGAGTAGAATGTGCTTGNGTAATTCTGTTATCCTAGC] [-] EMBL BE229155 [GGNANAGNNNGNGGNCGAAGGGGNAAGAGGGGNNGGGGAGANGAAGAAGGGGGAGGAGAGAGGGGGGNANGAGGAGGGAGGNAGAAAAGANGNAAGGGGGGNNNNAGAANNANGNGAGGGGGGGNGNNNNANNNAGGAGANAANNNNAGAGAGGGGGAGAGGTAANAGAGACNANCGGAAGNNGNGAAANGGGCNAANGGGAGNAGGAGGGGGANGGNNNGAGGGNAGAGNANATCCCCCCCNGGGGGNCGCCGCAAGTCCCAGCTCCTCCCGCNTCTCCAGTCCCAGTCCCAGTCCCAAGACCAGGACCAGCCACCCACGCNTCCTCCTTCCTCCNGTTGATGGATTTTTCTTCTCCCGTAATCGTAAATTCGTAATGTAATAATCTGTGCTGTACTATGTACTCCATTGATTTTTATTTGCTCTGGATTTCGAACTTCCCCAGCAGCAATGCTATGTTCCCTTTTCATTTCATCTGCTCATATGCATGTTGTTACTCAGTGAAACCATACTACCAATATAATGCTACTAGAGTAGAATGTGCTTGNGTAATTCTGTTATCCTAGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13983#0 TTCCACGGGTGGAGAGGCAGCCAAGGATACGATAGCAAGGAAGAGAGAGCGTTGAAGATG 60 consensus_13983#1 ------------------------------------------------------------ consensus_13983#0 CTGCTGACCACCCCGTTCGTGTCGTCCCCTGTGAGGGTCCAGGGCAATGGGGGCAGCGGC 120 consensus_13983#1 ------------------------------------------------------------ consensus_13983#0 GCCTCGCCGTGGGCGGGCGCGGCGACGGCGCTGAGGATCCAGGCGGCGAAGCAGCTGACG 180 consensus_13983#1 ---------------GGNANAGNNNGNGGNCGAAGGG----GNAAGAGGGGNNGGGGAGA 41 ** * * * *** * * * * * ** consensus_13983#0 GGGCGTGTGGTGACGACGAAGGCGGACAAGACGGTGGGGGTGGAGGTGGTGCGGCTGGCT 240 consensus_13983#1 NGAAGAAGGGGGAGGAGAGAGGGGGGNANGAGGAGGGAGGNAGAAAAGANGNAAGGGGGG 101 * * ** ** ** *** ** * ** * ** ** ** * * ** consensus_13983#0 CCTCACCCAAAGTACAAGCGGCGGGAGCGCATCAAGAAGAAGTACCAGGCGCACGACCCG 300 consensus_13983#1 NNNNA---GAANNANGNGAGG-GGGGGNGNNNNANNNAGGAG-ANAANNNNAGAGAGGGG 156 * ** * * ** *** * * * ** ** * * ** * consensus_13983#0 GACAACCAGTTCAAGGTCGGCGACGTCGTCGAGCTCCGCCGCTCCCGCCCCATCTCCAAG 360 consensus_13983#1 GAGAGGTAANA-GAGACNANCGGAAGNNGNGAAANGGGCNAANGGGAGNAGG------AG 209 ** * * ** ** ** ** ** consensus_13983#0 ACCAAGCACTTCCTCGCCGTCCCCCTCCCCCCGCGCGACACCCGCCGCAAGTCCCAGCTC 420 consensus_13983#1 GGGGANGGNNNGAGGGNAGAGNANATCCCCCCCNGGGGGNC--GCCGCAAGTCCCAGCTC 267 * * * ******* * * * ***************** consensus_13983#0 CTCCCGCCTCTCCAGTCCCAGTCCCAGTCCCAAGACCAGGACCAGCCACCCACGCCTCCT 480 consensus_13983#1 CTCCCGCNTCTCCAGTCCCAGTCCCAGTCCCAAGACCAGGACCAGCCACCCACGCNTCCT 327 ******* *********************************************** **** consensus_13983#0 CCTTCCTCCGATTGATGGATTTTTCTTCTCCCGTAATCGTAAATTCGTAATGTAATAATC 540 consensus_13983#1 CCTTCCTCCNGTTGATGGATTTTTCTTCTCCCGTAATCGTAAATTCGTAATGTAATAATC 387 ********* ************************************************* consensus_13983#0 TGTGCTGTACTATGTACTCCATTGATTTTTATTTGCTCTGGATTTCGAACTTCCCCAGCA 600 consensus_13983#1 TGTGCTGTACTATGTACTCCATTGATTTTTATTTGCTCTGGATTTCGAACTTCCCCAGCA 447 ************************************************************ consensus_13983#0 GCAATGCTATGTTCCCTTTTCATTTCATCTGCTCATATGCATGTTGTTACTCAGTGAAAC 660 consensus_13983#1 GCAATGCTATGTTCCCTTTTCATTTCATCTGCTCATATGCATGTTGTTACTCAGTGAAAC 507 ************************************************************ consensus_13983#0 CATACTACCAATATAATGCTACTAGAGTAGAATGTGCTTGTGTAATTCTGTTATCCTAGC 720 consensus_13983#1 CATACTACCAATATAATGCTACTAGAGTAGAATGTGCTTGNGTAATTCTGTTATCCTAGC 567 **************************************** ******************* consensus_13983#0 CCCCATCCCATCGAAGAAATTATTTAGGGCTTCTATAGCATCGAAAGACTAAAAGAACTC 780 consensus_13983#1 ------------------------------------------------------------ consensus_13983#0 AATAACCTTCGACTAGTGATACAACACCTCCGAACTACGTTCCCGGTCTTCAGCAAGCTT 840 consensus_13983#1 ------------------------------------------------------------ consensus_13983#0 CCCGGTTTCATTGTGATGGTTCCTAATATGATTCGAGAATTTCAATTTGATATTTGTTTT 900 consensus_13983#1 ------------------------------------------------------------ consensus_13983#0 AAACCATCCGGGAAACTTGTTTATACATGATACTGGTAGAATTCTACTAAAAAAAAAAAA 960 consensus_13983#1 ------------------------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||