|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13985#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 2002 fasta sequence
[CACTTGTCTGACGGGCCCTCGCCTTCCCTTCGCTTCCTCCCCATCTCCGCCTCCGCCTCCGCCGCCGCGCCGCCGCCGGCGACGACTCCGACGAGCGACCCCTCCGCGGGCACCGGGTCGCCATGTACCGCGCCGCCTCCGGCCTCGGGGCCATCAAGCGGCATGGACTGGATGGTCAAATGTTGAATGTTGCGATTAGGTGTGCTAGCACAAGTGTTGCACAGAGGTCATCAGGTGGCTTCTGGACCTGGCTGACAGGTGCACGGTCAAATGCATTACCTCCTCCAGATTTTACACTTCCAGGGGTCACCATTCCACCTCCGCTACCTGACCTTGTGGAGCCTGGCAAGACAAAAATCACAACACTTGCAAATGGTGTAAAAATTGCTTCTGAGACAACTCCAGGACCATCTTGTTCAGTTGGAGTATATGTTAATT-GTGGTTCTGTACATGAAGCACCTGAAACACTAGGTGCCACTCAGCTGTTGAAGAAGATGGCCTATACAACCACTACAAACAGGAGCCATTTGCGTGTTGTGCGTGAAATCGAGGCAGTAGGTGGCAATGTGAAAGCATCTGCTAACCGTGAGATGATGAGCTACAGTTATGCAGCCCTGAAAACTTACATGCCTGAAATGGTTGAGGTGCTTATTGATTGTGTACGCAATCCTGCTTTTCTTGATTGGGAAGTCAAGGAACAGATAATGAAACTGAAGGCAGAGCTTGCAGAAGCTTCAAGTAACCCTGAAACTTTTCTTTTGGAGGCTCTTCATTCTACTGGTTATTCTGGTGCTTTGGCAACCCCTCTGATTGCCTCAGAATCCTCAGTTAGCCGATTGAATACGAATGTCCTAGAATACTTCTTAGCTGAGAATTACACTGCTCCCCGAATTGTTCTAGCTGCAACAGGTGTTGATCATGATGAATTGGTATCTATTGCTGAACCACTTCTGTCTGACATGCCTGGTGTAACT-GGACCAGCAAAGCCAAAGTCTACCTATGTTGGTGGGGAATATAGAAGAACTGCTGATTCATCGAACACAGATGTTGCTTTGGCATTTGAGGTCCCTGGTGGGTGGCTCAAAGAAAAAGAATTTGTAACAGTATCAGTTCTTCAGACCCTTCTTGGTGGCGGTGGCACATATTCCTGGGGAAGGCATGGAAAAGGCTTGCATTCAAGTCTAAATCATCTCGCAAATGAATTCGACCAGATTAGATCGATAGCTGCTTTCAAGGATGTTCACAGTAACACTGGCATTTTTGGAATTCATACATCTACTGATGCAGCATTCGTTCCTAAGGCTATTGACTTGGCAACCAGAGAGCTCACTTCTCTTGCCACTCCTGGAAAAGTTGACCAAACTCAACTTGACCGTGCTAAAGCGACAGCTAAATCAGCAATCTTGATGAACCTGGAATCAAAGGCATCAGCAACTGAAGACATGGGACGGCAAATATTGGCCTTTGGTGAAAGGAAACCTGTTGAGCACCTTCTCAAGGCTGTTGATGGTGTTACTCTGAAAGACATTACAGCCCTTGCTGAGAAAATCATATCATCACCATTGACAATGGCATCTCATGGAAACGTTCTGAACGTGCCAACTTATGATTCAGTCAGTGGCAAGTTTCGCTCGAAATGAGTAGTAATGTGGTCATTGTTTTCCTCCTCCTGGACAAGTTTTAACTGTTGATAGTTTTTCCTCAGGCCATTCATTGGCAGGGTTTCAGAGAGAAAAATAAGGAGCTTCATACAATTTTGATCATTTAACTCTGGATGATTGAGAATACC-ATATTTTACCTTTTTCTGCAACATTTGTCCACTTGAGTTGGAATTTTTTATGCTGTTTTCATCAGTTTTATGGGCCTGTAAATTTTAGGGCCCTCTTTCGGTGGCGGCCAGGGCCTGTACAAAATACCGGTCTCCTTGCAAAATCTTTGACACGAATGCTGAAACACTTGAATAAATATTCTATCTATACTCTTGCATGACAGTAAAAAAAAA]
[+] EMBL AK101856 [CACTTGTCTGACGGGCCCTCGCCTTCCCTTCGCTTCCTCCCCATCTCCGCCTCCGCCTCCGCCGCCGCGCCGCCGCCGGCGACGACTCCGACGAGCGACCCCTCCGCGGGCACCGGGTCGCCATGTACCGCGCCGCCTCCGGCCTCGGGGCCATCAAGCGGCATGGACTGGATGGTCAAATGTTGAATGTTGCGATTAGGTGTGCTAGCACAAGTGTTGCACAGAGGTCATCAGGTGGCTTCTGGACCTGGCTGACAGGTGCACGGTCAAATGCATTACCTCCTCCAGATTTTACACTTCCAGGGGTCACCATTCCACCTCCGCTACCTGACCTTGTGGAGCCTGGCAAGACAAAAATCACAACACTTGCAAATGGTGTAAAAATTGCTTCTGAGACAACTCCAGGACCATCTTGTTCAGTTGGAGTATATGTTAATT GTGGTTCTGTACATGAAGCACCTGAAACACTAGGTGCCACTCAGCTGTTGAAGAAGATGGCCTATACAACCATTACAAACAGGAGCCATTTGCGTGTTGTGCGTGAAATCGAGGCAGTAGGTGGCAATGTGAAAGCATCTGCTAACCGTGAGATGATGAGCTACAGTTATGCAGCCCTGAAAACTTACATGCCTGAAATGGTTGAGGTGCTTATTGATTGTGTACGCAATCCTGCTTTTCTTGATTGGGAAGTCAAGGAACAGATAATGAAACTGAAGGCAGAGCTTGCAGAAGCTTCAAGTAACCCTGAAACTTTTCTTTTGGAGGCTCTTCATTCTACTGGTTATTCTGGTGCTTTGGCAACCCCTCTGATTGCCTCAGAATCCTCAGTTAGCCGATTGAATACGAATGTCCTAGAATACTTCTTAGCTGAGAATTACACTGCTCCCCGAATTGTTCTAGCTGCAACAGGTGTTGATCATGATGAATTGGTATCTATTGCTGAACCACTTCTGTCTGACATGCCTGGTGTAACT GGACCAGCAAAGCCAAAGTCTACCTATGTTGGTGGGGAATATAGAAGAACTGCTGATTCATCGAACACAGATGTTGCTTTGGCATTTGAGGTCCCTGGTGGGTGGCTCAAAGAAAAAGAATTTGTAACAGTATCAGTTCTTCAGACCCTTCTTGGTGGCGGTGGCACATATTCCTGGGGAAGGCATGGAAAAGGCTTGCATTCAAGTCTAAATCATCTCGCAAATGAATTCGACCAGATTAGATCGATAGCTGCTTTCAAGGATGTTCACAGTAACACTGGCATTTTTGGAATTCATACATCTACTGATGCAGCATTCGTTCCTAAGGCTATTGACTTGGCAACCAGAGAGCTCACTTCTCTTGCCACTCCTGGAAAAGTTGACCAAACTCAACTTGACCGTGCTAAAGCGACAGCTAAATCAGCAATCTTGATGAACCTGGAATCAAAGGCATCAGCAACTGAAGACATGGGACGGCAAATATTGGCCTTTGGTGAAAGGAAACCTGTTGAGCACCTTCTCAAGGCTGTTGATGGTGTTACTCTGAAAGACATTACAGCCCTTGCTGAGAAAATCATATCATCACCATTGACAATGGCATCTCATGGAAACGTTCTGAACGTGCCAACTTATGATTCAGTCAGTGGCAAGTTTCGCTCGAAATGAGTAGTAATGTGGTCATTGTTTTCCTCCTCCTGGACAAGTTTTAACTGTTGATAGTTTTTCCTCAGGCCATTCATTGGCAGGGTTTCAGAGAGAAAAATAAGGAGCTTCATACAATTTTGATCATTTAACTCTGGATGATTGAGAATACC ATATTTTACCTTTTTCTGCAACATTTGTCCACTTGAGTTGGAATTTTTTATGCTGTTTTCATCAGTTTTATGGGCCTGTAAATTTTAGGGCCCTCTTTCGGTGGCGGCCAGGGCCTGTACAAAATACCGGTCTCCTTGCAAAATCTTTGACACGAATGCTGAAACACTTGAATAAATATTCTATCTATACTCTTGCATGACAGT ]
[+] EMBL AK071930 [ TCTGACGGGCCCTCGCCTTCCCTTCGCTTCCTCCCCATCTCCGCCTCCGCCTCCGCCGCCGCGCCGCCGCCGGCGACGACTCCGACGAGCGACCCCTCCGCGGGCACCGGGTCGCCATGTACCGCGCCGCCTCCGGCCTCGGGGCCATCAAGCGGCATGGACTGGATGGTCAAATGTTGAATGTTGCGATTAGGTGTGCTAGCACAAGTGTTGCACAGAGGTCATCAGGTGGCTTCTGGACCTGGCTGACAGGTGCACGGTCAAATGCATTACCTCCTCCAGATTTTACACTTCCAGGGGTCACCATTCCACCTCCGCTACCTGACCTTGTGGAGCCTGGCAAGACAAAAATCACAACACTTGCAAATGGTGTAAAAATTGCTTCTGAGACAACTCCAGGACCATCTTGTTCAGTTGGAGTATATGTTAATT GTGGTTCTGTACATGAAGCACCTGAAACACTAGGTGCCACTCAGCTGTTGAAGAAGATGGCCTATACAACCACTACAAACAGGAGCCATTTGCGTGTTGTGCGTGAAATCGAGGCAGTAGGTGGCAATGTGAAAGCATCTGCTAACCGTGAGATGATGAGCTACAGTTATGCAGCCCTGAAAACTTACATGCCTGAAATGGTTGAGGTGCTTATTGATTGTGTACGCAATCCTGCTTTTCTTGATTGGGAAGTCAAGGAACAGATAATGAAACTGAAGGCAGAGCTTGCAGAAGCTTCAAGTAACCCTGAAACTTTTCTTTTGGAGGCTCTTCATTCTACTGGTTATTCTGGTGCTTTGGCAACCCCTCTGATTGCCTCAGAATCCTCAGTTAGCCGATTGAATACGAATGTCCTAGAATACTTCTTAGCTGAGAATTACACTGCTCCCCGAATTGTTCTAGCTGCAACAGGTGTTGATCATGATGAATTGGTATCTATTGCTGAACCACTTCTGTCTGACATGCCTGGTGTAACT GGACCAGCAAAGCCAAAGTCTACCTATGTTGGTGGGGAATATAGAAGAACTGCTGATTCATCGAACACAGATGTTGCTTTGGCATTTGAGGTCCCTGGTGGGTGGCTCAAAGAAAAAGAATTTGTAACAGTATCAGTTCTTCAGACCCTTCTTGGTGGCGGTGGCACATATTCCTGGGGAAGGCATGGAAAAGGCTTGCATTCAAGTCTAAATCATCTCGCAAATGAATTCGACCAGATTAGATCGATAGCTGCTTTCAAGGATGTTCACAGTAACACTGGCATTTTTGGAATTCATACATCTACTGATGCAGCATTCGTTCCTAAGGCTATTGACTTGGCAACCAGAGAGCTCACTTCTCTTGCCACTCCTGGAAAAGTTGACCAAACTCAACTTGACCGTGCTAAAGCGACAGCTAAATCAGCAATCTTGATGAACCTGGAATCAAAGGCATCAGCAACTGAAGACATGGGACGGCAAATATTGGCCTTTGGTGAAAGGAAACCTGTTGAGCACCTTCTCAAGGCTGTTGATGGTGTTACTCTGAAAGACATTACAGCCCTTGCTGAGAAAATCATATCATCACCATTGACAATGGCATCTCATGGAAACGTTCTGAACGTGCCAACTTATGATTCAGTCAGTGGCAAGTTTCGCTCGAAATGAGTAGTAATGTGGTCATTGTTTTCCTCCTCCTGGACAAGTTTTAACTGTTGATAGTTTTTCCTCAGGCCATTCATTGGCAGGGTTTCAGAGAGAAAAATAAGGAGCTTCATACAATTTTGATCATTTAACTCTGGATGATTGAGAATACC ATATTTTACCTTTTTCTGCAACATTTGTCCACTTGAGTTGGAATTTTTTATGCTGTTTTCATCAGTTTTATGGGCCTGTAAATTTTAGGGCCCTCTTTCGGTGGCGGCCAGGGCCTGTACAAAATACCGGTCTCCTTGCAAAATCTTTGACACGAATGCTGAAACACTTGAATAAATATTCTATCTATA ]
[+] EMBL CF322464 [ CGCCGCCGCCGGCGACGACTCCGACGAGCGACCCCTCCGCGGGCACCGGGTCGCCATGTACCGCGCCGCCTCCGGCCTCGGGGCCATCAAGCGGCATGGACTGGATGGTCAAATGTTGAATGTTGCGATTAGGTGTGCTAGCACAAGTGTTGCACAGAGGTCATCAGGTGGCTTCTGGACCTGGCTGACAGGTGCACGGTCAAATGCATTACCTCCTCCAGATTTTACACTTCCAGGGGTCACCATTCCACCTCCGCTACCTGACCTTGTGGAGCCTGGCAAGACAAAAATCACAACACTTGCAAATGGTGTAAAAATTGCTTCTGAGACAACTCCAGGACCATCTTGTTCAGTTGGAGTATATGTTAATTGGTGGTTCTGTACATGAAGCACCTGAAACACTAGGTGCCACTCAGCTGTTGAAGAAGATGGCCTATACAACCACTACAAACAGGAGCCATTTGCGTGTTGTGCGTGAAATCGAGGCAGTAGGTGGCAATGTGAAAGCATCTGCTAACCGTGAGATGATGAGCTACAGTTATGCAGCCCT ]
[+] EMBL CB661397 [ CTCCGACGAGCGACCCCTCCGCGGGCACCGGGTCGCCATGTACCGCGCCGCCTCCGGCCTCGGGGCCATCAAGCGGCATGGACTGGATGGTCAAATGTTGAATGTTGCGATTAGGTGTGCTAGCACAAGTGTTGCACAGAGGTCATCAGGTGGCTTCTGGACCTGGCTGACAGGTGCACGGTCAAATGCATTACCTCCTCCAGATTTTACACTTCCAGGGGTCACCATTCCACCTCCGCTACCTGACCTTGTGGAGCCTGGCAAGACAAAAATCACAACACTTGCAAATGGTGTAAAAATTGCTTCTGAGACAACTCCAGGACCATCTTGTTCAGTTGGAGTATATGTTAATT GTGGTTCTGTACATGAAGCACCTGAAACACTAGGTGCCACTCAGCTGTTGAAGAAGATGGCCTATACAACCACTACAAACAGGAGCCATTTGCGTGTTGTGCGTGAAATCGAGGCAGTAGGTGGCAATGTGAAAGCATCTGCTAACCGTGAGATGATGAGCTACAGTTATGCAGCCCTGAAAACTTACATGCCTGAAATGGTTGAGGTGCTTATTGATTGTGTACGCAATCCTGCTTTTCTTGATTGGGAAGTCAAGGAACAGATAATGAAACTGAAGGCAGAGCTTGCAGAAGCTTCAAGTAACCCTGAAACTTTTCTTTTGGAGGCTCTTCATTCTACTGGTTATTCTGGTGCTTTGGCAACCCCTCTGATTGCCTCAGAATCCTCAGTTAGCCGATTGAATACGAATGTCCTAGAATACTTCTTAGCTGAGAATTACACTGCTCCCCGAATTGTTCTAGCTGCAACAGGTGTTGATCATGATGAATTGGTATCTATTGCTGAACCA ]
[+] EMBL CF323634 [ TGAAATCGAGGCAGTAGGTGGCAATGTGAAAGCATCTGCTAACCGTGAGATGATGAGCTACAGTTATGCAGCCCTG AATTTTTTTGCCTGAAATGGTTGAGGTGCTTATTGATTGTGTACGCAATCCTGCTTTTCTTGATTGGGAAGTCAAGGAACAGATAATGAAACTGAAGGCAGAGCTTGCAGAAGCTTCAAGTAACCCTGAAACTTTTCTTTTGGAGGCTCTTCATTCTACTGGTTATTCTGGTGCTTTGGCAACCCCTCTGATTGCCTCAGAATCCTCAGTTAGCCGATTGAATACGAATGTCCTAGAATACTTCTTAGCTGAGAATTACACTGCTCCCCGAATTGTTCTAGCTGCAACAGGTGTTGATCATGATGAATTGGTATCTATTGCTGAACCACTTCTGTCTGACATGCCTGGTGTAACT GGACCAGCAAAGCCAAAGTCTACCTATGTTGGTGGGGAATATAGAAGAACTGCTGATTCATCGAACACAGATGTTGCTTTGGCATTTGAGGTCCCTGGTGGGTGGCTCAAAGAAAAAGAATTTGTAACAGTATCAGTTCTTCAGACCCTTCTTGGTGGCGGTGGCAC ]
[+] EMBL CA999664 [ CTTACATGCCTGAAATGGTTGAGGTGCTTATTGATTGTGTACGCAATCCTGCTTTTCTTGATTGGGAAGTCAAGGAACAGATAATGAAACTGAAGGCAGAGCTTGCAGAAGCTTCAAGTAACCCTGAAACTTTTCTTTTGGAGGCTCTTCATTCTACTGGTTATTCTGGTGCTTTGGCAACCCCTCTGATTGCCTCAGAATCCTCAGTTAGCCGATTGAATACGA ]
[+] EMBL AU065773 [ AGGCAGAGCTTGCAGAAGCTTCAAGTAACCCTGAAACTTTTCTTTTGGAGGCTCTTCATTCTACTGGTTATTCTGGTGCTTTGGCAACCCCTCTGATTGCCTCAGAATCCTCAGTTAGCCGATTGAATACGAATGTCCTAGAATACTTCTTAGCTGAGAATTACACTGCTCCCCGAATTGTTCTAGCTGCAACAGGTGTTGATCATGATGAATTGGTATCTATTGCTGAACCACTTCTGTCTGACATGCCTGGTGTAACT GGACCAGCAAAGCCAAAGTCTACCTATGTTGGTGGGGGATATAGAAGAACTNCTGATTCAT ]
[+] EMBL AU183215 [ TGCTCCCCGAATTGTTCTAGCTGCAACAGGTGTTGATCATGATGAATTGGTATCTATTGCTGAACCACTTCTGTCTGACATGCCTGGTGTAACTAGGACCAGCAAAGCCAAAGTCTACCTATGTTGGTGGGGAATATAGAAGAACTGCTGATTCATCGAACACAGATGTTGCTTTGGCATTTGAGGTCCCTGGTGGGTGGCTCAAAGAAAAAGAATTTGTAACAGTATCAGTTCTTCAGACCCTTCTTGGTGGCGGTGGCACATATTCCTGGGGAAGGCATGGAAAAGGCTTGCATTCAAGTCTAAATCATCTCGCAAATGAATTCGACCAGATTAGATCGATAGCTGCTTTCAAGGATGTTCACAGTAACACTGGCATTTTTGGAATTCATACATCTACTGATGCAGCATTCGTTCCTAAGGCTATT ]
[-] EMBL CB661398 [ TGCTGATTCATCGAACACAGATGTTGCTTTGGCATTTGAGGTCCCTGGTGGGTGGCTCAAAGAAAAAGAATTTGTAACAGTATCAGTTCTTCAGACCCTTCTTGGTGGCGGTGGCACATATTCCTGGGGAAGGCATGGAAAAGGCTTGCATTCAAGTCTAAATCATCTCGCAAATGAATTCGACCAGATTAGATCGATAGCTGCTTTCAAGGATGTTCACAGTAACACTGGCATTTTTGGAATTCATACATCTACTGATGCAGCATTCGTTCCTAAGGCTATTGACTTGGCAACCAGAGAGCTCACTTCTCTTGCCACTCCTGGAAAAGTTGACCAAACTCAACTTGACCGTGCTAAAGCGACAGCTAAATCAGCAATCTTGATGAACCTGGAATCAAAGGCATCAGCAACTGAAGACATGGGACGGCAAATATTGGCCTTTGGTGAAAGGAAACCTGTTGAGCACCTTCTCAAGGCTGTTGATGGTGTTACTCTGAAAGACATTACAGCCCTTGCTGAGAAAATCATATCATCACCATTGACAATGGCATCTCATGGAAACGTTCTGAACGTGCCAACTTATGATTCAGTCAGTGGCAAGTTTCGCTCGAAATGAGTAGTAATGTGGTCATTGTTTTCCTCCTCCTGGACAAGTTTTAACTGTTGATAGTTTTTCCTCAGGCCATTCATTGGCAGGGTTTCAGAGAGAAAAATAAGGAGCTTCATACAATTTTGATCATTTAACTCTGGATGATTGAGAATACC ATATTTTACC ]
[+] EMBL AU172947 [ AGGCATCAGCAACTGAAGACATGGGACGGCAAATATTGGCCTTTGGTGAAAGGAAACCTGTTGAGCACCTTNTCAAGGCTGTTGATGGTGTTACTCTGAAAGACATTACAGCCCTTGCTGAGAAAATCATATCATCACCATTGACAATGGCATCTCATGGAAACGTTCTGAACGTGCCAACTTATGATTCAGTCAGTGGCAAGTTTCGCTCGAAATGAGTAGTAATGTGGTCATTGTTTTCCTCCTCCTGGACAAGTTTTAACTGTTGATAGTTTTTCCTCAGNAAANTCATTGGCAGGGTTTCAGAGAGAAAAATAAGGAGCTTCATACAATTTTGATCATTTAACTCTGGATGATTGAGAATACCTATATTTTACCTTTTTCTGCAACATTTGTCCACTTGAGTTGGAATTTaaaaaaaa ]
[+] EMBL AU183216 [ GGAAACGTTCTGAACGTGCCAACTTATGATTCAGTCAGTGGCAAGTTTCGCTCGAAATGAGTAGTAATGTGGTCATTGTTTTCCTCCTCCTGGACAAGTTTTAACTGTTGATAGTTTTTCCTCAGGCCATTCATTGGCAGGGTTTCAGAGAGAAAAATAAGGAGCTTCATACAATTTTGATCATTTAACTCTGGATGATTGAGAATACC ATATTTTACCTTTTTCTGCAACATTTGTCCACTTGAGTTGGAATTTTTTATGCTGTTTTCATCAGTTTTATGGGCCTGTAAATTTTAGGGCCCTCTTTCGGTGGCGGCCAGGGCCTGTACAAAATACCGGTCTCCTTGCAAAATCTTTGACACGAATGCTGAAACACTTGAATAAATATTCTATCTATACTCTTGCATGCCAAAAAAAAAAAA]
consensusID : consensus_13985#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 937 fasta sequence
[TGGGTGGCTCAAAGAAAAAGAATTTGTAACAGTATCAGTTCTTCAGACCCTTCTTGGTGGCGGTGGCACATATTCCTGGGGAAGGCATGGAAAAGGCTTGCATTCAAGTCTAAATCATCTCGCAAATGAATTCGACCAGATTAGATCGATAGCTGCTTTCAAGGATGTTCACAGTAACACTGGCATTTTTGGAATTCATACATCTACTGATGCAGCATTCGTTCCTAAGGCTATTGACTTGGCAACCAGAGAGCTCACTTCTCTTGCCACTCCTGGAAAAGTTGACCAAACTCAACTTGACCGTGCTAAAGCGACAGCTAAATCAGCAATCTTGATGAACCTGGAATCAAAGGCATCAGCAACTGAAGACATGGGACGGCAAATATT-GGCCTTTGGTGAAAGGAAACCTGTTGAGCACCTT-CTCAAGGCTGTTGATGGTGTTACT-CTGAAAGACATTACAGCCCTTGCTGAGAAAATCATATCATCACCATTGACAATGGCATCTCATGGAAACGTTCTGAACGTGCCAACTTATGATTCAGTCAGTGGCAAGTTTCGCTCGAAATGAGTAGTAATGTGGTCATTGTTTTCCTCCTCCTGGACAAGTTTTACTGTTGATAGTTTTCCTCAGGCCATTCATTGGCAGGGTTCAGAAAGAAAATAGGAGCTCATACATTTTGACATTAACTCTGATGATGAGAACCCAATTTCCTTTTCTGAACATTGTCCATTGAGTGGGATTTTTTGCTGGTTATCAGTTATGGCCCGAAATTTAGGCCTCTTCGGGGGGGGGCCCGTCCAATCGCCTTGTGAGCTTTACCCCCTCTGCCGGTGTCACTGGACTGGAAACCTGGTGCCACTACCGCTCCCAAACCTATTCCTGACTAACAAAGCCCACTGCCCTTCCCCGTCCCTCTTTGTATGACCCCTTACATTA]
[+] EMBL BE039711 [TGGGTGGCTCAAAGAAAAAGAATTTGTAACAGTATCAGTTCTTCAGACCCTTCTTGGTGGCGGTGGCACATATTCCTGGGGAAGGCATGGAAAAGGCTTGCATTCAAGTCTAAATCATCTCGCAAATGAATTCGACCAGATTAGATCGATAGCTGCTTTCAAGGATGTTCACAGTAACACTGGCATTTTTGGAATTCATACATCTACTGATGCAGCATTCGTTCCTAAGGCTATTGACTTGGCAACCAGAGAGCTCACTTCTCTTGCCACTCCTGGAAAAGTTGACCAAACTCAACTTGACCGTGCTAAAGCGACAGCTAAATCAGCAATCTTGATGAACCTGGAATCAAAGGCATCAGCAACTGAAGACATGGGACGGCAAATATT GGCCTTTGGTGAAAGGAAACCTGTTGAGCACCTT CTCAAGGCTGTTGATGGTGTTACT CTGAAAGACATTACAGCCCTTGCTGAGAAAATCATATCATCACCATTGACAATGGCATCTCATGGAAACGTTCTGAACGTGCCAACTTATGATTCAGTCAGTGGCAAGTTTCGCTCGAAATGAGTAGTAATGTGGTCATTGTTTTCCTCCTCCTGGACAAGTTTTACTGTTGATAGTTTTCCTCAGGCCATTCATTGGCAGGGTTCAGAAAGAAAATAGGAGCTCATACATTTTGACATTAACTCTGATGATGAGAACCCAATTTCCTTTTCTGAACATTGTCCATTGAGTGGGATTTTTTGCTGGTTATCAGTTATGGCCCGAAATTTAGGCCTCTTCGGGGGGGGGCCCGTCCAATCGCCTTGTGAGCTTTACCCCCTCTGCCGGTGTCACTGGACTGGAAACCTGGTGCCACTACCGCTCCCAAACCTATTCCTGACTAACAAAGCCCACTGCCCTTCCCCGTCCCTCTTTGTATGACCCCTTACATTA]
[+] EMBL AU172946 [ GGTGGCTCAAAGAAAAAGAATTTGTAACAGTATCAGNTCTTCAGACCCTTCTTGGTGGCGGTGGCACATATTCCTGGGGAAGGCATGGAAAAGGCTTGCATTCAAGTCTAAATCATCTCGCAAATGAATTCGACCAGATTTTTTCGATAGCTGCTTTCAAGGATGTTCACAGTAACACTGGCATTTTTGGAATTCATACATCTACTGATGCANCATTCGTTCCTAAGGCTATTGACTTGGCAACCAGAGAGCTCACTTCTCTTGCCACTCCTGGAAAAGTTGACCAAACTCAACTTGACCGTGCTAAAGCGACAGCTAAATCAGCAATCTTGATGAACCTGGAATCAAAGGCATCAGCANCTGAAGACATGGGACGGCAAATATTAGGNCTTTGGTGAAAGGAAACCTGTTGAGCACCTTNCTCAAGGCTGTTGATGGTGTTACTCCTGA ]
consensusID : consensus_13985#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 317 fasta sequence
[ACAAGTTTTAANCTGGTTGANAANTTTTNCCCNNAGGCCATTCATTGGCAGGGTTTCNGAGAGAAAAATAAGGAGCNTCATACAANTTTGAACATTTAACNCNGGATGATTGAGAATACCATATTTTACCTTTTTCTGCAANATTTGTCCNCTTGAGTTGGAATTTTTTATGCTGTTTTCANCAGTTTTATGGGCCTGTAAATTTTNGGGCCCNCTTTCGGTGGCGGCCAGGGCCTGTACAAAATACNGGTCNCCTTNCAAAATCTTTGACNCGAATGCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU090574 [ACAAGTTTTAANCTGGTTGANAANTTTTNCCCNNAGGCCATTCATTGGCAGGGTTTCNGAGAGAAAAATAAGGAGCNTCATACAANTTTGAACATTTAACNCNGGATGATTGAGAATACCATATTTTACCTTTTTCTGCAANATTTGTCCNCTTGAGTTGGAATTTTTTATGCTGTTTTCANCAGTTTTATGGGCCTGTAAATTTTNGGGCCCNCTTTCGGTGGCGGCCAGGGCCTGTACAAAATACNGGTCNCCTTNCAAAATCTTTGACNCGAATGCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13985#0 CACTTGTCTGACGGGCCCTCGCCTTCCCTTCGCTTCCTCCCCATCTCCGCCTCCGCCTCC 60
consensus_13985#2 ------------------------------------------------------------
consensus_13985#1 ------------------------------------------------------------
consensus_13985#0 GCCGCCGCGCCGCCGCCGGCGACGACTCCGACGAGCGACCCCTCCGCGGGCACCGGGTCG 120
consensus_13985#2 ------------------------------------------------------------
consensus_13985#1 ------------------------------------------------------------
consensus_13985#0 CCATGTACCGCGCCGCCTCCGGCCTCGGGGCCATCAAGCGGCATGGACTGGATGGTCAAA 180
consensus_13985#2 ------------------------------------------------------------
consensus_13985#1 ------------------------------------------------------------
consensus_13985#0 TGTTGAATGTTGCGATTAGGTGTGCTAGCACAAGTGTTGCACAGAGGTCATCAGGTGGCT 240
consensus_13985#2 ------------------------------------------------------------
consensus_13985#1 ------------------------------------------------------------
consensus_13985#0 TCTGGACCTGGCTGACAGGTGCACGGTCAAATGCATTACCTCCTCCAGATTTTACACTTC 300
consensus_13985#2 ------------------------------------------------------------
consensus_13985#1 ------------------------------------------------------------
consensus_13985#0 CAGGGGTCACCATTCCACCTCCGCTACCTGACCTTGTGGAGCCTGGCAAGACAAAAATCA 360
consensus_13985#2 ------------------------------------------------------------
consensus_13985#1 ------------------------------------------------------------
consensus_13985#0 CAACACTTGCAAATGGTGTAAAAATTGCTTCTGAGACAACTCCAGGACCATCTTGTTCAG 420
consensus_13985#2 ------------------------------------------------------------
consensus_13985#1 ------------------------------------------------------------
consensus_13985#0 TTGGAGTATATGTTAATTGTGGTTCTGTACATGAAGCACCTGAAACACTAGGTGCCACTC 480
consensus_13985#2 ------------------------------------------------------------
consensus_13985#1 ------------------------------------------------------------
consensus_13985#0 AGCTGTTGAAGAAGATGGCCTATACAACCACTACAAACAGGAGCCATTTGCGTGTTGTGC 540
consensus_13985#2 ------------------------------------------------------------
consensus_13985#1 ------------------------------------------------------------
consensus_13985#0 GTGAAATCGAGGCAGTAGGTGGCAATGTGAAAGCATCTGCTAACCGTGAGATGATGAGCT 600
consensus_13985#2 ------------------------------------------------------------
consensus_13985#1 ------------------------------------------------------------
consensus_13985#0 ACAGTTATGCAGCCCTGAAAACTTACATGCCTGAAATGGTTGAGGTGCTTATTGATTGTG 660
consensus_13985#2 ------------------------------------------------------------
consensus_13985#1 ------------------------------------------------------------
consensus_13985#0 TACGCAATCCTGCTTTTCTTGATTGGGAAGTCAAGGAACAGATAATGAAACTGAAGGCAG 720
consensus_13985#2 ------------------------------------------------------------
consensus_13985#1 ------------------------------------------------------------
consensus_13985#0 AGCTTGCAGAAGCTTCAAGTAACCCTGAAACTTTTCTTTTGGAGGCTCTTCATTCTACTG 780
consensus_13985#2 ------------------------------------------------------------
consensus_13985#1 ------------------------------------------------------------
consensus_13985#0 GTTATTCTGGTGCTTTGGCAACCCCTCTGATTGCCTCAGAATCCTCAGTTAGCCGATTGA 840
consensus_13985#2 ------------------------------------------------------------
consensus_13985#1 ------------------------------------------------------------
consensus_13985#0 ATACGAATGTCCTAGAATACTTCTTAGCTGAGAATTACACTGCTCCCCGAATTGTTCTAG 900
consensus_13985#2 ------------------------------------------------------------
consensus_13985#1 ------------------------------------------------------------
consensus_13985#0 CTGCAACAGGTGTTGATCATGATGAATTGGTATCTATTGCTGAACCACTTCTGTCTGACA 960
consensus_13985#2 ------------------------------------------------------------
consensus_13985#1 ------------------------------------------------------------
consensus_13985#0 TGCCTGGTGTAACTGGACCAGCAAAGCCAAAGTCTACCTATGTTGGTGGGGAATATAGAA 1020
consensus_13985#2 ------------------------------------------------------------
consensus_13985#1 ------------------------------------------------------------
consensus_13985#0 GAACTGCTGATTCATCGAACACAGATGTTGCTTTGGCATTTGAGGTCCCTGGTGGGTGGC 1080
consensus_13985#2 ------------------------------------------------------------
consensus_13985#1 ----------------------------------------------------TGGGTGGC 8
consensus_13985#0 TCAAAGAAAAAGAATTTGTAACAGTATCAGTTCTTCAGACCCTTCTTGGTGGCGGTGGCA 1140
consensus_13985#2 ------------------------------------------------------------
consensus_13985#1 TCAAAGAAAAAGAATTTGTAACAGTATCAGTTCTTCAGACCCTTCTTGGTGGCGGTGGCA 68
consensus_13985#0 CATATTCCTGGGGAAGGCATGGAAAAGGCTTGCATTCAAGTCTAAATCATCTCGCAAATG 1200
consensus_13985#2 ------------------------------------------------------------
consensus_13985#1 CATATTCCTGGGGAAGGCATGGAAAAGGCTTGCATTCAAGTCTAAATCATCTCGCAAATG 128
consensus_13985#0 AATTCGACCAGATTAGATCGATAGCTGCTTTCAAGGATGTTCACAGTAACACTGGCATTT 1260
consensus_13985#2 ------------------------------------------------------------
consensus_13985#1 AATTCGACCAGATTAGATCGATAGCTGCTTTCAAGGATGTTCACAGTAACACTGGCATTT 188
consensus_13985#0 TTGGAATTCATACATCTACTGATGCAGCATTCGTTCCTAAGGCTATTGACTTGGCAACCA 1320
consensus_13985#2 ------------------------------------------------------------
consensus_13985#1 TTGGAATTCATACATCTACTGATGCAGCATTCGTTCCTAAGGCTATTGACTTGGCAACCA 248
consensus_13985#0 GAGAGCTCACTTCTCTTGCCACTCCTGGAAAAGTTGACCAAACTCAACTTGACCGTGCTA 1380
consensus_13985#2 ------------------------------------------------------------
consensus_13985#1 GAGAGCTCACTTCTCTTGCCACTCCTGGAAAAGTTGACCAAACTCAACTTGACCGTGCTA 308
consensus_13985#0 AAGCGACAGCTAAATCAGCAATCTTGATGAACCTGGAATCAAAGGCATCAGCAACTGAAG 1440
consensus_13985#2 ------------------------------------------------------------
consensus_13985#1 AAGCGACAGCTAAATCAGCAATCTTGATGAACCTGGAATCAAAGGCATCAGCAACTGAAG 368
consensus_13985#0 ACATGGGACGGCAAATATTGGCCTTTGGTGAAAGGAAACCTGTTGAGCACCTTCTCAAGG 1500
consensus_13985#2 ------------------------------------------------------------
consensus_13985#1 ACATGGGACGGCAAATATTGGCCTTTGGTGAAAGGAAACCTGTTGAGCACCTTCTCAAGG 428
consensus_13985#0 CTGTTGATGGTGTTACTCTGAAAGACATTACAGCCCTTGCTGAGAAAATCATATCATCAC 1560
consensus_13985#2 ------------------------------------------------------------
consensus_13985#1 CTGTTGATGGTGTTACTCTGAAAGACATTACAGCCCTTGCTGAGAAAATCATATCATCAC 488
consensus_13985#0 CATTGACAATGGCATCTCATGGAAACGTTCTGAACGTGCCAACTTATGATTCAGTCAGTG 1620
consensus_13985#2 ------------------------------------------------------------
consensus_13985#1 CATTGACAATGGCATCTCATGGAAACGTTCTGAACGTGCCAACTTATGATTCAGTCAGTG 548
consensus_13985#0 GCAAGTTTCGCTCGAAATGAGTAGTAATGTGGTCATTGTTTTCCTCCTCCTGGACAAGTT 1680
consensus_13985#2 -----------------------------------------------------ACAAGTT 7
consensus_13985#1 GCAAGTTTCGCTCGAAATGAGTAGTAATGTGGTCATTGTTTTCCTCCTCCTGGACAAGTT 608
*******
consensus_13985#0 TTAACT--GTTGATAGTTTTTCC--TCAGGCCATTCATTGGCAGGGTTTCAGAGAGAAAA 1736
consensus_13985#2 TTAANCTGGTTGANAANTTTTNCCCNNAGGCCATTCATTGGCAGGGTTTCNGAGAGAAAA 67
consensus_13985#1 TTACT---GTTGATAGTTTTCC---TCAGGCCATTCATTGGCAGGGTT-CAGAAAGAAAA 661
*** ***** * *** ********************* * ** ******
consensus_13985#0 ATAAGGAGCTTCATACAATTTTGATCATTTAACTCTGGATGATTGAGAATACCATATTTT 1796
consensus_13985#2 ATAAGGAGCNTCATACAANTTTGAACATTTAACNCNGGATGATTGAGAATACCATATTTT 127
consensus_13985#1 T--AGGAGCT-CATACA--TTTTGACATT-AACTCTG-ATGAT---GAGAACCCAATTT- 710
****** ****** *** **** *** * * ***** ** *** ****
consensus_13985#0 ACCTTTTTCTGCAACATTTGTCCACTTGAGTTGGAATTTTTTATGCTGTTTTCATCAGTT 1856
consensus_13985#2 ACCTTTTTCTGCAANATTTGTCCNCTTGAGTTGGAATTTTTTATGCTGTTTTCANCAGTT 187
consensus_13985#1 --CCTTTTCTG-AACATT-GTCCA-TTGAGTGGGATTTTTT---GCTGGTT--ATCAGTT 760
* ******* ** *** **** ****** *** ***** **** ** * *****
consensus_13985#0 TTATGGGCCTGTAAATTTTAGGGCCCTCTTTCGGTGGC--GGCCAGGGCCTGTACAAAAT 1914
consensus_13985#2 TTATGGGCCTGTAAATTTTNGGGCCCNCTTTCGGTGGC--GGCCAGGGCCTGTACAAAAT 245
consensus_13985#1 AT---GGCCCG-AAATTTAGGCCTCTTCGGGGGGGGGCCCGTCCAATCGCCTTGTGAGCT 816
* **** * ****** * * * ** *** * *** * * * *
consensus_13985#0 ACCGGTCTCCTTGCAAAATCTTTG-ACACGAATGCTGAAACACTTGAATAAATATTCTAT 1973
consensus_13985#2 ACNGGTCNCCTTNCAAAATCTTTG-ACNCGAATGCTGAAAAAAAAAAAAAAAAA------ 298
consensus_13985#1 TTACCCCCTCTGCCGGTGTCACTGGACTGGAAACCTGGTGCCACTACCGCTCCCAAACCT 876
* ** * ** ** ** *** ***
consensus_13985#0 CTATACTCTTGCATGACAGTAAAAAAAAA------------------------------- 2002
consensus_13985#2 ----------AAAAAAAAAAAAAAAAAAA------------------------------- 317
consensus_13985#1 ATTCCTGACTAACAAAGCCCACTGCCCTTCCCCGTCCCTCTTTGTATGACCCCTTACATT 936
* *
consensus_13985#0 -
consensus_13985#2 -
consensus_13985#1 A 937
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||