cluster # 13986

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Oryza sativa
cluster # 13986 cluster # 13986 Sequences # 14 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_13986#0 length = 2307 sequences # 13

consensus_13986#1 length = 520 sequences # 1

consensusID : consensus_13986#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 13
consensus length = 2307
fasta sequence

                              [GGAGGAGGAGGAGGAGGAGGAGCGGTGGGATTGGAGGAGAGGAGCGACGCGGCGGAGGACTCGCTGGTGTCGGTGCTCGCCGTGTACGACGGCTTCTGCAACCTCAAGCAGATTAATTTGGAGCTCAAGGTCTGTGGAGGATCATCTATCCGGAAAACTCTGGTGAAAGAAGCGGCTTCCTACGGCGCTGCGCATCTCATCCTTGGTGTTGCGAAGAATTCTCTATCTTTTAGTAGATCCTCCTCCATTTCTGTTGCCAAGTACTGTGCAAAGAGGGTTCCTACTGGATGCTCGGTTCTTGCAGTGAACAACGGCAAGATTCTTTTTCATAAAGATGCAGTACAGCAAGAACCATACCATAGTGCTAGCACAATGACAGAGACACCAAGGAGGAGTTACCGGAAGCTCCTGACTTCTGTGATTGGGGAGAAACTTCGGGATGAGTGTGAACAAGATAACAGGTCCATTTTCCGGGCTGTCACCATGCCACCAAGCTCTCCGGCACCAACGAGAGAAGTTTCATTGGCATTAGTCCCAATGAAGGTTCACCGTCGTGAATCACCAGAAGTGGCAACTGGCTGGTCCTTCCTTAGGAAGAAGTTCCTGCCTGACAGAAAACCTGCCTCGCATGACAGATCGAAGATGTCCGTGGTGCAGTGGGCAATGCGGCTACCTAGTAGGTATTCGTCAGCTTCACCAGTCTGTTCAGAGTACAGAACCACAACACCAGATGGCATCACAAGTGCTAGTCGTATTTTGCGTGACCGGGTGGCTGTCCCTTCGAGAAGCAATTCAGGAAAGTCTTCTGTGGTGATCGAGGAATTGGATAATTCCTCGGATAAAGAAATTCCAGAGGAGTTGATTGCACTCAGAGAAAAATTCCCTTCCGTTTATTCTACCTTCAGTCACAGCGAGCTTGCAAAGATCACTTCTGATTTCTCACCTGAGTGTATAGTTGGACAAGGTGGCACTAGCCAAGTTTACAAAGGTTGCTTAGAAAATGGCAAGGAATTGGCAGTAAAGATCTTGAAGTATTCCGATGAAGTGCTGAAGGAGTTCGTCTCAGAGATTGAGATTGTCAGCTCCCTCAGCCACAAGAACATTATATCGCTTGCCGGTTTCTGCTTCAAGGACACTGACCTTCTGTTGGTGTACGAGTAC-TTGCGAAGAGGCAGTCTGGAAGAGATACTGCATGGTGAGAAAGGATGTGACAACTTATTCGGATGGACCGAGAGGTTCAATGTGGCCCTTGGAGTTGCTCATGCACTAGATTATCTCCATGGTAGTGGCAACAATCGTCCAGTGATCCATAGGGATGTCAAGTCATCAAACATCCTCATCTCACAGGATTTTGAGCCAAAGTTATCAGATTTTGGCCTCGCGCTCTGGGACACTGATGCAACATCGCAGATCACATGCAACGATGTTGCTGGAACTTTCGGATACTTGGCTCCAGAATATTTCATGCATGGCAAGGTGAATGACAAAATTGATGTATACGCTTTTGGTGTCGTCCTTCTTGAACTCATTTCAGGCAAGAAACCGCTTTGCACTGGTTGTCCGAAAGGTCAGGAGAGCCTAGTGATGTGGGCAAACTCCATCATACAGGGAGGAAAACTCACACAACTTGTGGATCCTAACTTGCCTACAGAGGACCATGCCAACAAAGTGGAGAGGATGACCCTTGCTGCTTCCCTCTGCATCAGACCAACACCTCAACGCCGTCCTCACATTGCAGTTGTTCTGAAGCTACTTAACGGCGACAATGGTATTCTGAAGTGGGCTAGATCAGAAGTAGGATTGTCATACGAGAGCGATGGTGATGAACCTGTGGTTACACTGCCAGAGAATAACCGCAACA-TCCAGTCCTACATCAATCTTGCATTCGATGTCGATGACGATTCTGCCTCTGTCAGCAGCAACGATTTCATCGCTGCGAACACTT-CCCTGGAAGAGTATTTACGAGGAAGATGGAGCCGATCGTCGAGCTTTGATTGATCAGTCCATGGTATACTAGTCATTTTTGTATAGTAGGTATAGATCTTTTTTCCCCTTCTTCTTAAGTTAACTTCTTTTGTTCCTTGGATGAGAAGTGGCACATGCAAAATGCCCTCCTCCAAGTCTGTCCTTTAATCTGATGTCTTAGATCTTGTTCTCCCATAAGTTATGGGTCTGTTCTATCATCTCAGAAGGATGTAATTTCCTTGTTATAAACCAAAATTCTCTCATCCAAAGGATGAGAAAGTGGGAAATAAACTAGGAAGATTGTTATTGCAAAAAAAAAAAAAAAAACACTGTCATGCCGTT]

[+] EMBL AK072656             [GGAGGAGGAGGAGGAGGAGGAGCGGTGGGATTGGAGGAGAGGAGCGACGCGGCGGAGGACTCGCTGGTGTCGGTGCTCGCCGTGTACGACGGCTTCTGCAACCTCAAGCAGATTAATTTGGAGCTCAAGGTCTGTGGAGGATCATCTATCCGGAAAACTCTGGTGAAAGAAGCGGCTTCCTACGGCGCTGCGCATCTCATCCTTGGTGTTGCGAAGAATTCTCTATCTTTTAGTAGATCCTCCTCCATTTCTGTTGCCAAGTACTGTGCAAAGAGGGTTCCTACTGGATGCTCGGTTCTTGCAGTGAACAACGGCAAGATTCTTTTTCATAAAGATGCAGTACAGCAAGAACCATACCATAGTGCTAGCACAATGACAGAGACACCAAGGAGGAGTTACCGGAAGCTCCTGACTTCTGTGATTGGGGAGAAACTTCGGGATGAGTGTGAACAAGATAACAGGTCCATTTTCCGGGCTGTCACCATGCCACCAAGCTCTCCGGCACCAACGAGAGAAGTTTCATTGGCATTAGTCCCAATGAAGGTTCACCGTCGTGAATCACCAGAAGTGGCAACTGGCTGGTCCTTCCTTAGGAAGAAGTTCCTGCCTGACAGAAAACCTGCCTCGCATGACAGATCGAAGATGTCCGTGGTGCAGTGGGCAATGCGGCTACCTAGTAGGTATTCGTCAGCTTCACCAGTCTGTTCAGAGTACAGAACCACAACACCAGATGGCATCACAAGTGCTAGTCGTATTTTGCGTGACCGGGTGGCTGTCCCTTCGAGAAGCAATTCAGGAAAGTCTTCTGTGGTGATCGAGGAATTGGATAATTCCTCGGATAAAGAAATTCCAGAGGAGTTGATTGCACTCAGAGAAAAATTCCCTTCCGTTTATTCTACCTTCAGTCACAGCGAGCTTGCAAAGATCACTTCTGATTTCTCACCTGAGTGTATAGTTGGACAAGGTGGCACTAGCCAAGTTTACAAAGGTTGCTTAGAAAATGGCAAGGAATTGGCAGTAAAGATCTTGAAGTATTCCGATGAAGTGCTGAAGGAGTTCGTCTCAGAGATTGAGATTGTCAGCTCCCTCAGCCACAAGAACATTATATCGCTTGCCGGTTTCTGCTTCAAGGACACTGACCTTCTGTTGGTGTACGAGTAC TTGCGAAGAGGCAGTCTGGAAGAGATACTGCATGGTGAGAAAGGATGTGACAACTTATTCGGATGGACCGAGAGGTTCAATGTGGCCCTTGGAGTTGCTCATGCACTAGATTATCTCCATGGTAGTGGCAACAATCGTCCAGTGATCCATAGGGATGTCAAGTCATCAAACATCCTCATCTCACAGGATTTTGAGCCAAAGTTATCAGATTTTGGCCTCGCGCTCTGGGACACTGATGCAACATCGCAGATCACATGCAACGATGTTGCTGGAACTTTCGGATACTTGGCTCCAGAATATTTCATGCATGGCAAGGTGAATGACAAAATTGATGTATACGCTTTTGGTGTCGTCCTTCTTGAACTCATTTCAGGCAAGAAACCGCTTTGCACTGGTTGTCCGAAAGGTCAGGAGAGCCTAGTGATGTGGGCAAACTCCATCATACAGGGAGGAAAACTCACACAACTTGTGGATCCTAACTTGCCTACAGAGGACCATGCCAACAAAGTGGAGAGGATGACCCTTGCTGCTTCCCTCTGCATCAGACCAACACCTCAACGCCGTCCTCACATTGCAGTTGTTCTGAAGCTACTTAACGGCGACAATGGTATTCTGAAGTGGGCTAGATCAGAAGTAGGATTGTCATACGAGAGCGATGGTGATGAACCTGTGGTTACACTGCCAGAGAATAACCGCAACA TCCAGTCCTACATCAATCTTGCATTCGATGTCGATGACGATTCTGCCTCTGTCAGCAGCAACGATTTCATCGCTGCGAACACTT CCCTGGAAGAGTATTTACGAGGAAGATGGAGCCGATCGTCGAGCTTTGATTGATCAGTCCATGGTATACTAGTCATTTTTGTATAGTAGGTATAGATCTTTTTTCCCCTTCTTCTTAAGTTAACTTCTTTTGTTCCTTGGATGAGAAGTGGCACATGCAAAATGCCCTCCTCCAAGTCTGTCCTTTAATCTGATGTCTTAGATCTTGTTCTCCCATAAGTTATGGGTCTGTTCTATCATCTCAGAAGGATGTAATTTCCTTGTTATAAACCAAAATTCTCTCATCCAAAGGATGAGAAAGTGGGAAATAAACTAGGAAGA                                          ]
[+] EMBL CF303836             [                                                                                                                                     ggGGAGGATCATCTATCCGGAAAACTCTGGTGAAAGAAGCGGCTTCCTACGGCGCTGCGCATCTCATCCTTGGTGTTGCGAAGAATTCTCTATCTTTTAGTAGATCCTCCTCCATTTCTGTTGCCAAGTACTGTGCAAAGAGGGTTCCTACTGGATGCTCGGTTCTTGCAGTGAACAACGGCTAGATTCTTTTTCATAAAGATGCAGTACAGCAAGAACCATACCATAGTGCTAGCACAATGACAGAGACACCAAGGAGGAGTTACCGGAAGCTCCTGACTTCTGTGATTGGGGAGAAACTTCGGGATGAGTGTGAACAAGATAACAGGTCCATTTTCCGGGCTGTCACCATGCCACCAAGCTCTCCGGCACCAACGAGAGAAGTTTCATTGGCATTAGTCCCAATGAAGGTTCACCGTCGTGAAT ACCAGAAGTGGCAACTGGCTGGTCCTTCCTTAGNAAGAAGTTCCTGCCTGACAGAAAACCTGCCTCGCATGACAGATCGAAGATGTCCGTGGTGCAGTGGGCAATGCGGCTACCTAGTAGGTATTCGTCAGCTTCACCAGTCTGTTCAGAGTACAGAACC CAACACCAGATGGCATCACAAGTGCTAGTCGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CF304875             [                                                                                                                                        GAGGATCATCTATCCGGAAAACTCTGGTGAAAGAAGCGGCTTCCTACGGCGCTGCGCATCTCATCCTTGGTGTTGCGAAGAATTCTCTATCTTTTAGTAGATCCTCCTCCATTTCTGTTGCCAAGTACTGTGCAAAGAGGGTTCCTACTGGATGCTCGGTTCTTGCAGTGAACAACGGCAAGATTCTTTTTCATAAAGATGCAGTACAGCAAGAACCATACCATAGTGCTAGCACAATGACAGAGACACCAAGGAGGAGTTACCGGAAGCTCCTGACTTCTGTGATTGGGGAGAAACTTCGGGATGAGTGTGAACAAGATAACAGGTCCATTTTCCGGGCTGTCACCATGCCACCAAGCTCTCCGGCACCAACGAGAGAAGTTTCATTGGCATTAGTCCCAATGAAGGTTCACCGTCGTGAATCACCAGAAGTGGCAACTGGCTGGTCCTTCCTTAGGAAGAAGTTCCTGCCTGACAGAAAACCTGCCTCGCATGACAGATCGAAGATGTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CB672649             [                                                                                                                                                                                                                                                                                                                                                                                                                         TGACTTCTGTGATTGGGGAGAAACTTCGGGATGAGTGTGAACAAGATAACAGGTCCATTTTCCGGGCTGTCACCATGCCACCAAGCTCTCCGGCACCAACGAGAGAAGTTTCATTGGCATTAGTCCCAATGAAGGTTCACCGTCGTGAATCACCAGAAGTGGCAACTGGCTGGTCCTTCCTTAGGAAGAAGTTCCTGCCTGACAGAAAACCTGCCTCGCATGACAGATCGAAGATGTCCGTGGTGCAGTGGGCAATGCGGCTACCTAGTAGGTATTCGTCAGCTTCACCAGTCTGTTCAGAGTACAGAACCACAACACCAGATGGCATCACAAGTGCTAGTCGTATTTTGCGTGACCGGGTGGCTGTCCCTTCGAGAAGCAATTCAGGAAAGTCTTCTGTGGTGATCGAGGAATTGGATAATTCCTCGGATAAAGAAATTCCAGAGGAGTTGATTGCACTCAGAGAAAAATTCCCTTCCGTTTATTCTACCTTCAGTCACAGCGAGCTTGCAAAGATCACTTCTGATTTCTCACCTGAGTGTATAGTTGGACAAGGTGGCACTAGCCAAGTTTACAAAGGTTGCTTAGAAAATGGCAAGGAATTGGCAGTAAAGATCTTGAAGTATTCCGATGAAGTGCTGAAGGAGTTCGTCTCAGAGATTGAGATTGTCAGCTCCCTCAGCCACAAGAACATTATATCGCTTGCCGGTTTCTGCTTC AGGACACTGACCTTCTGTTGGTGTACGAGTACTTTGCG AGAAGCAGTCTGGGAGAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CF304763             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   CGGCACCAACGAGAGAAGTTTCATTGGCATTAGTCCCAATGAAGGTTCACCGTCGTGAATCACCAGAAGTGGCAACTGGCTGGTCCTTCCTTAGGAAGAAGTTCCTGCCTGACAGAAAACCTGCCTCGCATGACAGATCGAAGATGTCCGTGGTGCAGTGGGCAATGCGGCTACCTAGTAGGTATTCGTCAGCTTCACCAGTCTGTTCAGAGTACAGAACCACAACACCAGATGGCATCACAAGTGCTAGTCGTATTTTGCGTGACCGGGTGGCTGTCCCTTCGAGAAGCAATTCAGGAAAGTCTTCTGTGGTGATCGAGGAATTGGATAATTCCTCGGATA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CF304826             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   CGGCACCAACGAGAGAAGTTTCATTGGCATTAGTCCCAATGAAGGTTCACCGTCGTGAATCACCAGAAGTGGCAACTGGCTGGTCCTTCCTTAGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CF319772             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               CTGACCTTCTGTTGGTGTACGAGTAC TTGCGAAGAGGCAGTCTGGAAGAGATACTGCATGGTGAGAAAGGATGTGACAACTTATTCGGATGGACCGAGAGGTTCAATGTGGCCCTTGGAGTTGCTCATGCACTAGATTATCTCCATGGTAGTGGCAACAATCGTCCAGTGATCC TAGGGATGTCAAGTCATCAAACATCCTCATCTCACAGGATTTTGAGCCAAAGTTATCAGATTTTGGCCTCGCGCTCTGGGACACTGATGCAACATCGCAGATCACATGCAACGATGTTGCTGGAACTTTCGGATACTTGGCTCCAGAATATTTCATGCATGGCAAGGTGAATGACAAAATTGATGTATACGCTTTTGGTGTCGTCCTTCTTGAACTCATTTCAGGCAAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CA753618             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       GATGGACCGAGAGGTTCAATGTGGCCCTTGGAGTTGCTCATGCACTAGATTATCTCCATGGTAGTGGCAACAATCGTCCAGTGATCCATAGGGATGTCAAGTCATCAAACATCCTCATCTCACAGGATTTTGAGCCAAAGTTATCAGATTTTGGCCTCGCGCTCTGGGACACTGATGCAACATCGCAGATCACATGCAACGATGTTGCTGGAACTTTCGGATACTTGGCTCCAGAATATTTCATGCATGGCAAGGTGAATGACAAAATTGATGTATACGCTTTTGGTGTCGTCCTTCTTGAACTCATTTCAGGCAAGAAACCGCTTTGCACTGGTTGTCCGAAAGGTCAGGAGAGCCTAGTGATGTGGGCAAACTCCATCATACAGGGAGGGAAACTCACACAACTTGTGGATCCTAACTTGCCTACAGAGGACCATGCCAACAAAGTGGAGAGGATGACCCTTGCTGCTTCCCTCTGCATCAGACCAACACCTCAACGCCGTCCTCACATTGCAGTTGTTCTGAAGCTATCTAACGGCGACCATGGTATTCTGAGGTGGGCTAGATCAGAAGTAGGATTGTCAT CGAGAGCGATGGTGATG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[-] EMBL CB672650             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  AGAAACCGCTTTGCACTGGTTGTCCGAAAGGTCAGGAGAGCCTAGTGATGTGGGCAAACTCCATCATACAGGGAGGAAAACTCACACAACTTGTGGATCCTAACTTGCCTACAGAGGACCATGCCAACAAAGTGGAGAGGATGACCCTTGCTGCTTCCCTCTGCATCAGACCAACACCTCAACGCCGTCCTCACATTGCAGTTGTTCTGAAGCTACTTAACGGCGACAATGGTATTCTGAAGTGGGCTAGATCAGAAGTAGGATTGTCATACGAGAGCGATGGTGATGAACCTGTGGTTACACTGCCAGAGAATAACCGCAACA TCCAGTCCTACATCAATCTTGCATTCGATGTCGATGACGATTCTGCCTCTGTCAGCAGCAACGATTTCATCGCTGCGAACACTT CCCTGGAAGAGTATTTACGAGGAAGATGGAGCCGATCGTCGAGCTTTGATTGATCAGTCCATGGTATACTAGTCATTTTTGTATAGTAGGTATAGATCTTTTTTCCCCTTCTTCTTAAGTTAACTTCTTTTGTTCCTTGGATGAGAAGTGGCACATGCAAAATGCCCTCCTCCAAGTCTGTCCTTTAATCTGATGTCTTAGATCTTGTTCTCCCATAAGTTATGGGTCTGTTCTATCATCTCAGAAGGATGTAATTTCCTTGTTATAAACCAAAATTCTCTCATCCAAAGGATGAGAAAGAAGGGAATAAACTAGGAAGATTGT                                      ]
[+] EMBL CB096296             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               TGACCCTTGCTGCTTCCCTCTGCATCAGACCAACACCTCAACGCCGTCCTCACATTGCAGTTGTTCTGAAGCTACTTAACGGCGACAATGGCATTCTGAAGTGGGCTAGATCAGAAGTAGGATTGTCATACGAGAGCGATGGTGATGAACCTGTGGTTACACTGCCAGAGAATAACCGCAACA TCCAGTCCTACATCAATCTTGCATTCGATGTCGATGACGATTCTGCCTCTGTCAGCAGCAACGATTTCATCGCTGCGAACACTT CCCTGGAAGAGTATTTACGAGGAAGATGGAGCCGATCGTCGAGCTTTGATTGATCAGTCCATGGTATACTAGTCATTTTTGTATAGTAGGTATAGATCTTTTTTCCCCTTCTTCTTAAGTTAACTTCTTTTGTTCCTTGGATGAGAAGTGGCACATGCAAAATGCCCTCCTCCAAGTCTGTCCTTTAATCTGATGTCTTAGATCTTGTTCTCCCATAAGTTATGGGTCTGTTCTATCATCTCAGAAGGATGTAATTTCCTTGTTATAA                                                                                              ]
[-] EMBL CB638025             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           TTGTTCTGAAGCTACTTAACGGCGACAATGGTATTTTGAAGTGGGCTAGATCAGAAGTAGGATTGTCATACGAGAGCGATGGTGATGAACCTGTGGTTACACTGCCAGAGAATAACCGCAACA TCCAGTCCTACATCAATCTTGCATTCGATGTCGATGACGATTCTGCCTCTGTCAGCAGCAACGATTTCATCGCTGCGAACACTT CCCTGGAAGAGTATTTACGAGGAAGATGGAGCCGATCGTCGAGCTTTGATTGATCAGTCCATGGTATACTAGTCATTTTTGTATAGTAGGTATAGATCTTTTTTCCCCTTCTTCTTAAGTTAACTTCTTTTGTTCCTTGGATGAGAAGTGGCACATGCAAAATGCCCTCCTCCAAGTCTGTCCTTTAATCTGATGTCTTAGATCTTGTTCTCCCATAAGTTATGGGTCTGTTCTATCATCTCAGAAGGATGTAATTTCCTTGTTATAAACC AAATTCTCTCATCCAAAGGATGAGAAAGTGGGAAATAAACTAAAAAGATT                                        ]
[-] EMBL CF319773             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               TACGAGAGCGATGGTGATGAACCTGTGGTTACACTGCCAGAGAATAACCGCAANACTTCAGTCCTACATCAATCTTGCATTCGATGTCGATGACGATTCTGCCTCTGTCAGCAGCAACGATTTCATCGCTGCGAACACTT CCCCTGAAGAGTATTTACGAGGAAGATGGAGCCGATCGTCGAGCTTTGATTGATCAGTCCATGGTATACTAGTCATTTTTGTATAGTAGGTATAGATCTTTTTTCCCCTTCTTCTTAAGTTAACTTCTTTTGTTCCTTGGATGAGAAGTGGCACATGCAAAATGCCCTCCTCCAAGTCTGTCCTTTAATCTGATGTCTTAGATCTTGTTCTCCCATAAGTTATGGGTCTGTTCTATCATCTCAGAAGGATGTAATTTCCTTGTTATAAACCAAAATTCTCTCATCCAAAGGATGAGAAAGTGGGAAATAAACTAGGAAGATTGTTATTGCAAAAAAAAAAAAAAAAACACTGTCATGCCGTT]
[+] EMBL BI813035             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            AGCAGCAACGATTTCATCGCTGCGAACACTTCCCCTGGAAGAGTATTTACGAGGAAGATGGA CCGATCGTCGAGCTTTGATTGATCCGTCCCTGGTATACTAGTCATTTTTGTATAGTAGGTATAGATCTTTTTTCCCCTTCTTCTTAAGTTAACTTCTTTTGTTCCTTGGATGAGAAGTGGCACATGCCAAATGCCCTCCTCCAAGTCTGTCCTTTAATCTGATGTCTTAGATCTTGTTCTCCCATAAGTTATGGGTCTGTTCTATCATCTCAGAAGGATGTAATTTCCTTGTTATAAACCCAAATTCTTTCATCCCAAGGATTAGAAAGTGGGAAATAAACTAGGAAGATTGTTATTGCCAAAAAAAAAA                     ]




>consensus_13986#0
GGAGGAGGAGGAGGAGGAGGAGCGGTGGGATTGGAGGAGAGGAGCGACGCGGCGGAGGAC
TCGCTGGTGTCGGTGCTCGCCGTGTACGACGGCTTCTGCAACCTCAAGCAGATTAATTTG
GAGCTCAAGGTCTGTGGAGGATCATCTATCCGGAAAACTCTGGTGAAAGAAGCGGCTTCC
TACGGCGCTGCGCATCTCATCCTTGGTGTTGCGAAGAATTCTCTATCTTTTAGTAGATCC
TCCTCCATTTCTGTTGCCAAGTACTGTGCAAAGAGGGTTCCTACTGGATGCTCGGTTCTT
GCAGTGAACAACGGCAAGATTCTTTTTCATAAAGATGCAGTACAGCAAGAACCATACCAT
AGTGCTAGCACAATGACAGAGACACCAAGGAGGAGTTACCGGAAGCTCCTGACTTCTGTG
ATTGGGGAGAAACTTCGGGATGAGTGTGAACAAGATAACAGGTCCATTTTCCGGGCTGTC
ACCATGCCACCAAGCTCTCCGGCACCAACGAGAGAAGTTTCATTGGCATTAGTCCCAATG
AAGGTTCACCGTCGTGAATCACCAGAAGTGGCAACTGGCTGGTCCTTCCTTAGGAAGAAG
TTCCTGCCTGACAGAAAACCTGCCTCGCATGACAGATCGAAGATGTCCGTGGTGCAGTGG
GCAATGCGGCTACCTAGTAGGTATTCGTCAGCTTCACCAGTCTGTTCAGAGTACAGAACC
ACAACACCAGATGGCATCACAAGTGCTAGTCGTATTTTGCGTGACCGGGTGGCTGTCCCT
TCGAGAAGCAATTCAGGAAAGTCTTCTGTGGTGATCGAGGAATTGGATAATTCCTCGGAT
AAAGAAATTCCAGAGGAGTTGATTGCACTCAGAGAAAAATTCCCTTCCGTTTATTCTACC
TTCAGTCACAGCGAGCTTGCAAAGATCACTTCTGATTTCTCACCTGAGTGTATAGTTGGA
CAAGGTGGCACTAGCCAAGTTTACAAAGGTTGCTTAGAAAATGGCAAGGAATTGGCAGTA
AAGATCTTGAAGTATTCCGATGAAGTGCTGAAGGAGTTCGTCTCAGAGATTGAGATTGTC
AGCTCCCTCAGCCACAAGAACATTATATCGCTTGCCGGTTTCTGCTTCAAGGACACTGAC
CTTCTGTTGGTGTACGAGTACTTGCGAAGAGGCAGTCTGGAAGAGATACTGCATGGTGAG
AAAGGATGTGACAACTTATTCGGATGGACCGAGAGGTTCAATGTGGCCCTTGGAGTTGCT
CATGCACTAGATTATCTCCATGGTAGTGGCAACAATCGTCCAGTGATCCATAGGGATGTC
AAGTCATCAAACATCCTCATCTCACAGGATTTTGAGCCAAAGTTATCAGATTTTGGCCTC
GCGCTCTGGGACACTGATGCAACATCGCAGATCACATGCAACGATGTTGCTGGAACTTTC
GGATACTTGGCTCCAGAATATTTCATGCATGGCAAGGTGAATGACAAAATTGATGTATAC
GCTTTTGGTGTCGTCCTTCTTGAACTCATTTCAGGCAAGAAACCGCTTTGCACTGGTTGT
CCGAAAGGTCAGGAGAGCCTAGTGATGTGGGCAAACTCCATCATACAGGGAGGAAAACTC
ACACAACTTGTGGATCCTAACTTGCCTACAGAGGACCATGCCAACAAAGTGGAGAGGATG
ACCCTTGCTGCTTCCCTCTGCATCAGACCAACACCTCAACGCCGTCCTCACATTGCAGTT
GTTCTGAAGCTACTTAACGGCGACAATGGTATTCTGAAGTGGGCTAGATCAGAAGTAGGA
TTGTCATACGAGAGCGATGGTGATGAACCTGTGGTTACACTGCCAGAGAATAACCGCAAC
ATCCAGTCCTACATCAATCTTGCATTCGATGTCGATGACGATTCTGCCTCTGTCAGCAGC
AACGATTTCATCGCTGCGAACACTTCCCTGGAAGAGTATTTACGAGGAAGATGGAGCCGA
TCGTCGAGCTTTGATTGATCAGTCCATGGTATACTAGTCATTTTTGTATAGTAGGTATAG
ATCTTTTTTCCCCTTCTTCTTAAGTTAACTTCTTTTGTTCCTTGGATGAGAAGTGGCACA
TGCAAAATGCCCTCCTCCAAGTCTGTCCTTTAATCTGATGTCTTAGATCTTGTTCTCCCA
TAAGTTATGGGTCTGTTCTATCATCTCAGAAGGATGTAATTTCCTTGTTATAAACCAAAA
TTCTCTCATCCAAAGGATGAGAAAGTGGGAAATAAACTAGGAAGATTGTTATTGCAAAAA
AAAAAAAAAAAACACTGTCATGCCGTT

consensusID : consensus_13986#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 520
fasta sequence

                              [TCACAGCGAGCTTGCAAAGATCACTTCTGATTTCTCACCTGAGTGTATAGTTGGACAAGGTGGCACTAGCCAAGTTTACAAAGGTTGCTTAGAAAATGGCAAGGAATTGGCAGTAAAGATCTTGAAGTATTCCGATGAAGTGCTGAAGGAGTTCGTCTCAGAGATTGAGATTGTCAGCTCCCTCAGCCACAAGAACATTATATCGCTTGCCGGTTTCTGCTTCAAGGACACTGACCTTCTGTTGGTGTACGAGTACTTGCGAAGAGGCAGTCTGGAAGAGATACTGCATGGTATGTTATGTAACTTCTACCACCTGTTAGTTTTTCTCCCTTTAACATTGCCATTTATCAAGAAAACCATCTTATTCTGATGTCACACAGGTGAGAAAGGATGTGACAACTTATTCGGATGGACCGAGNNNTTCAATGTGGCCCTTGGAGTTGCTCATGCACTNNNTTATCTCCATGNTNNTGGCAACAATCGTCCAGTGATCCATNNNGATGTCAAGTCNNNNNNCATC]

[+] EMBL CF196228             [TCACAGCGAGCTTGCAAAGATCACTTCTGATTTCTCACCTGAGTGTATAGTTGGACAAGGTGGCACTAGCCAAGTTTACAAAGGTTGCTTAGAAAATGGCAAGGAATTGGCAGTAAAGATCTTGAAGTATTCCGATGAAGTGCTGAAGGAGTTCGTCTCAGAGATTGAGATTGTCAGCTCCCTCAGCCACAAGAACATTATATCGCTTGCCGGTTTCTGCTTCAAGGACACTGACCTTCTGTTGGTGTACGAGTACTTGCGAAGAGGCAGTCTGGAAGAGATACTGCATGGTATGTTATGTAACTTCTACCACCTGTTAGTTTTTCTCCCTTTAACATTGCCATTTATCAAGAAAACCATCTTATTCTGATGTCACACAGGTGAGAAAGGATGTGACAACTTATTCGGATGGACCGAGNNNTTCAATGTGGCCCTTGGAGTTGCTCATGCACTNNNTTATCTCCATGNTNNTGGCAACAATCGTCCAGTGATCCATNNNGATGTCAAGTCNNNNNNCATC]




>consensus_13986#1
TCACAGCGAGCTTGCAAAGATCACTTCTGATTTCTCACCTGAGTGTATAGTTGGACAAGG
TGGCACTAGCCAAGTTTACAAAGGTTGCTTAGAAAATGGCAAGGAATTGGCAGTAAAGAT
CTTGAAGTATTCCGATGAAGTGCTGAAGGAGTTCGTCTCAGAGATTGAGATTGTCAGCTC
CCTCAGCCACAAGAACATTATATCGCTTGCCGGTTTCTGCTTCAAGGACACTGACCTTCT
GTTGGTGTACGAGTACTTGCGAAGAGGCAGTCTGGAAGAGATACTGCATGGTATGTTATG
TAACTTCTACCACCTGTTAGTTTTTCTCCCTTTAACATTGCCATTTATCAAGAAAACCAT
CTTATTCTGATGTCACACAGGTGAGAAAGGATGTGACAACTTATTCGGATGGACCGAGNN
NTTCAATGTGGCCCTTGGAGTTGCTCATGCACTNNNTTATCTCCATGNTNNTGGCAACAA
TCGTCCAGTGATCCATNNNGATGTCAAGTCNNNNNNCATC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13986#0      GGAGGAGGAGGAGGAGGAGGAGCGGTGGGATTGGAGGAGAGGAGCGACGCGGCGGAGGAC 60
consensus_13986#1      ------------------------------------------------------------
                                                                                   

consensus_13986#0      TCGCTGGTGTCGGTGCTCGCCGTGTACGACGGCTTCTGCAACCTCAAGCAGATTAATTTG 120
consensus_13986#1      ------------------------------------------------------------
                                                                                   

consensus_13986#0      GAGCTCAAGGTCTGTGGAGGATCATCTATCCGGAAAACTCTGGTGAAAGAAGCGGCTTCC 180
consensus_13986#1      ------------------------------------------------------------
                                                                                   

consensus_13986#0      TACGGCGCTGCGCATCTCATCCTTGGTGTTGCGAAGAATTCTCTATCTTTTAGTAGATCC 240
consensus_13986#1      ------------------------------------------------------------
                                                                                   

consensus_13986#0      TCCTCCATTTCTGTTGCCAAGTACTGTGCAAAGAGGGTTCCTACTGGATGCTCGGTTCTT 300
consensus_13986#1      ------------------------------------------------------------
                                                                                   

consensus_13986#0      GCAGTGAACAACGGCAAGATTCTTTTTCATAAAGATGCAGTACAGCAAGAACCATACCAT 360
consensus_13986#1      ------------------------------------------------------------
                                                                                   

consensus_13986#0      AGTGCTAGCACAATGACAGAGACACCAAGGAGGAGTTACCGGAAGCTCCTGACTTCTGTG 420
consensus_13986#1      ------------------------------------------------------------
                                                                                   

consensus_13986#0      ATTGGGGAGAAACTTCGGGATGAGTGTGAACAAGATAACAGGTCCATTTTCCGGGCTGTC 480
consensus_13986#1      ------------------------------------------------------------
                                                                                   

consensus_13986#0      ACCATGCCACCAAGCTCTCCGGCACCAACGAGAGAAGTTTCATTGGCATTAGTCCCAATG 540
consensus_13986#1      ------------------------------------------------------------
                                                                                   

consensus_13986#0      AAGGTTCACCGTCGTGAATCACCAGAAGTGGCAACTGGCTGGTCCTTCCTTAGGAAGAAG 600
consensus_13986#1      ------------------------------------------------------------
                                                                                   

consensus_13986#0      TTCCTGCCTGACAGAAAACCTGCCTCGCATGACAGATCGAAGATGTCCGTGGTGCAGTGG 660
consensus_13986#1      ------------------------------------------------------------
                                                                                   

consensus_13986#0      GCAATGCGGCTACCTAGTAGGTATTCGTCAGCTTCACCAGTCTGTTCAGAGTACAGAACC 720
consensus_13986#1      ------------------------------------------------------------
                                                                                   

consensus_13986#0      ACAACACCAGATGGCATCACAAGTGCTAGTCGTATTTTGCGTGACCGGGTGGCTGTCCCT 780
consensus_13986#1      ------------------------------------------------------------
                                                                                   

consensus_13986#0      TCGAGAAGCAATTCAGGAAAGTCTTCTGTGGTGATCGAGGAATTGGATAATTCCTCGGAT 840
consensus_13986#1      ------------------------------------------------------------
                                                                                   

consensus_13986#0      AAAGAAATTCCAGAGGAGTTGATTGCACTCAGAGAAAAATTCCCTTCCGTTTATTCTACC 900
consensus_13986#1      ------------------------------------------------------------
                                                                                   

consensus_13986#0      TTCAGTCACAGCGAGCTTGCAAAGATCACTTCTGATTTCTCACCTGAGTGTATAGTTGGA 960
consensus_13986#1      -----TCACAGCGAGCTTGCAAAGATCACTTCTGATTTCTCACCTGAGTGTATAGTTGGA 55
                            *******************************************************

consensus_13986#0      CAAGGTGGCACTAGCCAAGTTTACAAAGGTTGCTTAGAAAATGGCAAGGAATTGGCAGTA 1020
consensus_13986#1      CAAGGTGGCACTAGCCAAGTTTACAAAGGTTGCTTAGAAAATGGCAAGGAATTGGCAGTA 115
                       ************************************************************

consensus_13986#0      AAGATCTTGAAGTATTCCGATGAAGTGCTGAAGGAGTTCGTCTCAGAGATTGAGATTGTC 1080
consensus_13986#1      AAGATCTTGAAGTATTCCGATGAAGTGCTGAAGGAGTTCGTCTCAGAGATTGAGATTGTC 175
                       ************************************************************

consensus_13986#0      AGCTCCCTCAGCCACAAGAACATTATATCGCTTGCCGGTTTCTGCTTCAAGGACACTGAC 1140
consensus_13986#1      AGCTCCCTCAGCCACAAGAACATTATATCGCTTGCCGGTTTCTGCTTCAAGGACACTGAC 235
                       ************************************************************

consensus_13986#0      CTTCTGTTGGTGTACGAGTACTTGCGAAGAGGCAGTCTGGAAGAGATACTGCATGGTGAG 1200
consensus_13986#1      CTTCTGTTGGTGTACGAGTACTTGCGAAGAGGCAGTCTGGAAGAGATACTGCATGGT--- 292
                       *********************************************************   

consensus_13986#0      AAAGGATGTGACAACTTATTCGGATGGACCGAGAGGTTCAATGTGGCCCTTGGAGTTGCT 1260
consensus_13986#1      --ATGTTATG-TAACTTCT----ACCACCTGTTAGTTTTTCTC---CCTTTAACATTGC- 341
                         * * * **  ***** *    *    * *  ** **   *    ** **    **** 

consensus_13986#0      CATGCACTAGATTATCTCCATGGTAGTGGCAACAATCGTCCAGTGATCCATAGGGATGTC 1320
consensus_13986#1      CATTTATCAAGAAAACCATCTTATTCTGATGTCA------CACAGGTGAGAAAGGATGTG 395
                       ***  *  *    * *    *  *  **    **      **  * *    * ****** 

consensus_13986#0      AAGTCATCAAACATCCTCATCTCACAGGATTTTGAGCCAAAGTTATCAGATTTTGGCCTC 1380
consensus_13986#1      ACAACTT-----ATTCGGATGGACCGAGNNNTTCAAT-GTGGCCCTTGGAGTT-GCTCAT 448
                       *   * *     ** *  **    *  *   ** *      *   *  ** ** *  *  

consensus_13986#0      GCGCTCTGGGACACTGATGCAACATCGCAGATCACATGCAACGATGTTGCTGGAACTTTC 1440
consensus_13986#1      GCACTNNNTTATCTCCATGNTNN-TGGCAACAATCGTCCAGTGAT-CCATNNNGATGTCA 506
                       ** **     *     ***     * ***     * * **  ***         *  *  

consensus_13986#0      GGATACTTGGCTCCAGAATATTTCATGCATGGCAAGGTGAATGACAAAATTGATGTATAC 1500
consensus_13986#1      AGTCNNNNNNCATC---------------------------------------------- 520
                        *        *  *                                              

consensus_13986#0      GCTTTTGGTGTCGTCCTTCTTGAACTCATTTCAGGCAAGAAACCGCTTTGCACTGGTTGT 1560
consensus_13986#1      ------------------------------------------------------------
                                                                                   

consensus_13986#0      CCGAAAGGTCAGGAGAGCCTAGTGATGTGGGCAAACTCCATCATACAGGGAGGAAAACTC 1620
consensus_13986#1      ------------------------------------------------------------
                                                                                   

consensus_13986#0      ACACAACTTGTGGATCCTAACTTGCCTACAGAGGACCATGCCAACAAAGTGGAGAGGATG 1680
consensus_13986#1      ------------------------------------------------------------
                                                                                   

consensus_13986#0      ACCCTTGCTGCTTCCCTCTGCATCAGACCAACACCTCAACGCCGTCCTCACATTGCAGTT 1740
consensus_13986#1      ------------------------------------------------------------
                                                                                   

consensus_13986#0      GTTCTGAAGCTACTTAACGGCGACAATGGTATTCTGAAGTGGGCTAGATCAGAAGTAGGA 1800
consensus_13986#1      ------------------------------------------------------------
                                                                                   

consensus_13986#0      TTGTCATACGAGAGCGATGGTGATGAACCTGTGGTTACACTGCCAGAGAATAACCGCAAC 1860
consensus_13986#1      ------------------------------------------------------------
                                                                                   

consensus_13986#0      ATCCAGTCCTACATCAATCTTGCATTCGATGTCGATGACGATTCTGCCTCTGTCAGCAGC 1920
consensus_13986#1      ------------------------------------------------------------
                                                                                   

consensus_13986#0      AACGATTTCATCGCTGCGAACACTTCCCTGGAAGAGTATTTACGAGGAAGATGGAGCCGA 1980
consensus_13986#1      ------------------------------------------------------------
                                                                                   

consensus_13986#0      TCGTCGAGCTTTGATTGATCAGTCCATGGTATACTAGTCATTTTTGTATAGTAGGTATAG 2040
consensus_13986#1      ------------------------------------------------------------
                                                                                   

consensus_13986#0      ATCTTTTTTCCCCTTCTTCTTAAGTTAACTTCTTTTGTTCCTTGGATGAGAAGTGGCACA 2100
consensus_13986#1      ------------------------------------------------------------
                                                                                   

consensus_13986#0      TGCAAAATGCCCTCCTCCAAGTCTGTCCTTTAATCTGATGTCTTAGATCTTGTTCTCCCA 2160
consensus_13986#1      ------------------------------------------------------------
                                                                                   

consensus_13986#0      TAAGTTATGGGTCTGTTCTATCATCTCAGAAGGATGTAATTTCCTTGTTATAAACCAAAA 2220
consensus_13986#1      ------------------------------------------------------------
                                                                                   

consensus_13986#0      TTCTCTCATCCAAAGGATGAGAAAGTGGGAAATAAACTAGGAAGATTGTTATTGCAAAAA 2280
consensus_13986#1      ------------------------------------------------------------
                                                                                   

consensus_13986#0      AAAAAAAAAAAACACTGTCATGCCGTT 2307
consensus_13986#1      ---------------------------