cluster # 13993

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Oryza sativa
cluster # 13993 cluster # 13993 Sequences # 14 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_13993#0 length = 1027 sequences # 11

consensus_13993#1 length = 499 sequences # 2
consensus_13993#2 length = 229 sequences # 1

consensusID : consensus_13993#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 11
consensus length = 1027
fasta sequence

                              [CCCTCGCAATTCTTCGACCTCCTAAACTCCCCCATCGCGATCCCTCTCCTCCTCCTCTTTCCCCAATCTCGCGCGACGCGGCGG-AACCCTAGCCCCCACCGCGATTCGCTCGCCGGAGAGGGAGAGGGAGGGAAGGGAGGCTAGGGGACCCCCTCGCCGGCGGCGGAG-A-TGGAGGTGAAGCTGTGGAACGACAAGCGGGAGCGGGAGCTCCT-GGA-GAGCCTCGCCGACCTGTACGCCATCATCAAGGCGACGGAGAAGCTGGAGCGCGCCTACGTCCGCGACCTCGTCTCCGCCGCCGACTACGAGGCCGAGTGCCTC-AAGCTCATCTCCCAGTTCAACTCCCTCTCCTCCTCGCTCGCCGGCGTCGTCACCATCCCCCGGTTCGTCGAGGCCTACCGCCTCGACTGCCCCGCCGCCC-TCAACCGCCTCG-TTCAG-TCCGGCGTCCCCG-CCACCG-TCGAGC-TCCGCGCCGCGGCGT--CC-TCG-TCCGCGCCGG-CCTCC-TCCGCGGCGTCCGCGGCCGCCATCGCCCAGTGCGTCCAGAGCTTTATTACCGCCATGGATGCCGTCAAGCTCAACATGCTCGCCAACGACCAGGT-CCG-CCCCTTGCTCCACGACCTCTCGACCT-CCATGGGGAAGCTGGGCCCCGTCCTGCCGCCGGACTTCGAAGGGAAGGTCAAGGTGAGCGAGTGGCT-CGCCAAGCTAAATAAGATGGGGGCCGGGGATGAGCTCACCGAGCAACAGGCAAGGCAGCTCAACTTCGATCTGGATTCGGCGTACAGTGCGTTCATGGCATCACTGCCCAGCACCGGCCTATGAGCAAGCCTCATCCTGGTTCTGAGTTGGTTTCTTCTTTTTATTTTTCTCATGTGTTTTTCTATGGATCACCGCTGCAGTGTTATAGCCTTATAGGTATGTGTAACTTGAATTGTGCTATATTATTTGTCAATAATAGTGCCAATTTTGTGGTAACACATGCTGTTATAATGAGTTCTGTGGCCTATTGGTTATAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AK059870             [CCCTCGCAATTCTTCGACCTCCTAAACTCCCCCATCGCGATCCCTCTCCTCCTCCTCTTTCCCCAATCTCGCGCGACGCGGCGG AACCCTAGCCCCCACCGCGATTCGCTCGCCGGAGAGGGAGAGGGAGGGAAGGGAGGCTAGGGGACCCCCTCGCCGGCGGCGGAG A TGGAGGTGAAGCTGTGGAACGACAAGCGGGAGCGGGAGCTCCT GGA GAGCCTCGCCGACCTGTACGCCATCATCAAGGCGACGGAGAAGCTGGAGCGCGCCTACGTCCGCGACCTCGTCTCCGCCGCCGACTACGAGGCCGAGTGCCTC AAGCTCATCTCCCAGTTCAACTCCCTCTCCTCCTCGCTCGCCGGCGTCGTCACCATCCCCCGGTTCGTCGAGGCCTACCGCCTCGACTGCCCCGCCGCCC TCAACCGCCTCG TTCAG TCCGGCGTCCCCG CCACCG TCGAGC TCCGCGCCGCGGCGT  CC TCG TCCGCGCCGG CCTCC TCCGCGGCGTCCGCGGCCGCCATCGCCCAGTGCGTCCAGAGCTTTATTACCGCCATGGATGCCGTCAAGCTCAACATGCTCGCCAACGACCAGGT CCG CCCCTTGCTCCACGACCTCTCGACCT CCATGGGGAAGCTGGGCCCCGTCCTGCCGCCGGACTTCGAAGGGAAGGTCAAGGTGAGCGAGTGGCT CGCCAAGCTAAATAAGATGGGGGCCGGGGATGAGCTCACCGAGCAACAGGCAAGGCAGCTCAACTTCGATCTGGATTCGGCGTACAGTGCGTTCATGGCATCACTGCCCAGCACCGGCCTATGAGCAAGCCTCATCCTGGTTCTGAGTTGGTTTCTTCTTTTTATTTTTCTCATGTGTTTTTCTATGGATCACCGCTGCAGTGTTATAGCCTTATAGGTATGTGTAACTTGAATTGTGCTATATTATTTGTCAATAATAGTGCCA                                                                            ]
[+] EMBL OSC799               [                                                      CTCTTTCCCCAATCTCGCGCGA  CGGCGGNAACCCTAGCCCCCACCGCGATTCGCTCGCCGGAGAGGGAGAGGGAGGGAAGGGAGGCTAGGGGACCCCCTCGCCGGCGG GANGNATTGGAGGTGAAGCTGTGGAACGACAAGCGGGAG AGNANNT TT GNANGAGCCTCGCCGACCTGTACGCCATCATCAAGGCGACGGAGAAGCTGGAGCGCGCCTACGTCCGCGACCTCGTCTCCGCCGCCGACTACGAGGCCGAGTG CTC AAGCTCATCTCCCAGTTCAACTNCCTCTNCTCCTCGCTCGCCGGCGTCGTCACCATCCCCCGGTTCGTCGAGGNCTACCGCttgattnc                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL AK099116             [                                                              CCAATCTCGCGCGACGCGGCGG AACCCTAGCCCCCACCGCGATTCGCTCGCCGGAGAGGGAGAGGGAGGGAAGGGAGGCTAGGGGACCCCCTCGCCGGCGGCGGAG A TGGAGGTGAAGCTGTGGAACGACAAGCGGGAGCGGGAGCTCCT GGA GAGCCTCGCCGACCTGTACGCCATCATCAAGGCGAAGGAGAAGCTGGAGCGCGCCTACGTCCGCGACCTCGTCTCCGCCGCCGACTACGAGGCCGAGTGCCTC AAGCTCATCTCCCAGTTCAACTCCCTCTCCTCCTCGCTCGCCGGCGTCGTCACCATCCCCCGGTTCGTCGAGGCCTACCGCCTCGACTGCCCCGCCGCCC TCAACCGCCTCG TTCAG TCCGGCGTCCCCG CCACCG TCGAGC TCCGCGCCGCGGCGT  CC TCG TCCGCGCCGG CCTCC TCCGCGGCGTCCGCGGCCGCCATCGCCCAGTGCGTCCAGAGCTTTATTACCGCCATGGATGCCGTCAAGCTCAACATGCTCGCCAACGACCAGGT CCG CCCCTTGCTCCACGACCTCTCGACCT CCATGGGGAAGCTGGGCCCCGTCCTGCCGCCGGACTTCGAAGGGAAGGTCAAGGTGAGCGAGTGGCT CGCCAAGCTAAATAAGATGGGGGCCGGGGATGAGCTCACCGAGCAACAGGCAAGGCAGCTCAACTTCGATCTGGATTCGGCGTACAGTGCGTTCATGGCATCACTGCCCAGCACCGGCCTATGAGCAAGCCTCATCCTGGTTCTGAGTTGGTTTCTTCTTTTTATTTTTCTCATGTGTTTTTCTATGGATCACCGCTGCAGTGTTATAGCCTTATAGGTATGTGTAACTTGAATTGTGCTATATTATTTGTCAATAATAGTGCCA                                                                            ]
[+] EMBL AK104274             [                                                                 ATCTCGCGCGACGCGGCGG AACCCTAGCCCCCACCGCGATTCGCTCGCCGGAGAGGGAGAGGGAGGGAAGGGAGGCTAGGGGACCCCCTCGCCGGCGGCGGAG A TGGAGGTGAAGCTGTGGAACGACAAGCGGGAGCGGGAGCTCCT GGA GAGCCTCGCCGACCTGTACGCCATCATCAAGGCGACGGAGAAGCTGGAGCGCGCCTACGTCCGCGACCTCGTCTCCGCCGCCGACTACGAGGCCGAGTGCCTC AAGCTCATCTCCCAGTTCAACTCCCTCTCCTCCTCGCTCGCCGGCGTCGTCACCATCCCCCGGTTCGTCGAGGCCTACCGCCTCGACTGCCCCGCCGCCC TCAACCGCCTCG TTCAG TCCGGCGTCCCCG CCACCG TCGAGC TCCGCGCCGCGGCGT  CC TCG TCCGCGCCGG CCTCC TCCGCGGCGTCCGCGGCCGCCATCGCCCAGTGCGTCCAGAGCTTTATTACCGCCATGGATGCCGTCAAGCTCAACATGCTCGCCAACGACCAGGT CCG CCCCTTGCTCCACGACCTCTCGACCT CCATGGGGAAGCTGGGCCCCGTCCTGCCGCCGGACTTCGAAGGGAAGGTCAAGGTGAGCGAGTGGCT CGCCAAGCTAAATAAGATGGGGGCCGGGGATGAGCTCACCGAGCAACAGGCAAGGCAGCTCAACTTCGATCTGGATTCGGCGTACAGTGCGTTCATGGCATCACTGCCCAGCACCGGCCTATGAGCAAGCCTCATCCTGGTTCTGAGTTGGTTTCTTCTTTTTATTTTTCTCATGTGTTTTTCTATGGATCACCGCTGCAGTGTTATAGCCTTATAGGTATGTGTAACTTGAATTGTGCTATATTATTTGTCAATAATAGTGCCA                                                                            ]
[+] EMBL OS1321747            [                                                                          GACG GGCGG AACCCTAGCCCCCACCGCGATTCGCTCGCCGGAGAGGGAGAGGGAGGGAAGGGAGGCTAGGGGACCCCCTCGCCGGCGG GGAG A TGGAGGTGAAGCTGTGGAACGACAAGCGGGAGCGAGAGCTCTN GGA GAGCCTCGCCGACCTGTACGCCATCATCAAGGCGACGGAGAAGCTGGAGCGCGCCTACGTCCGCAACCTCGTNTCCGCCGCCGACTACNAGGCCGAGTGCCTCAAAGCTCATCTNCCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL AU057403             [                                                                               GGCGG AACCCTAGCCCCCACCGCGATTCGCTCGCCGGAGAGGGAGAGGGAGGGAAGGGAGGCTAGGGGACCCCCTCGCCGGCGG GGAG A TGGAGGTGAAGCTGTGGAACGACAAGCGGGAGCGNGAGCTCCTGGGA GAGCCTCGCCGACCTGTACGCCATCATCAAGGCGACGGAGAAGCTGGAGCGCGCCTACGTCCGCGACCTCGTCTCCGCCGCCGACTACGAGGCCGAGTGCCTC AAGCTCATCTCCCAGTTCAACTCCCTCTCCTCCTCGCTCGCCGGCGTCGTCACCATCCCCCGGTTCGTCGAGGCCTACCGCCTCGACTGCCCCGCCGCCCTTCAACCGCCTCGTTTCAGTTCCGGCGTCCCCGCCCACCGATNGAGCTTCCGCGCCGCGGCGTTCCCTTCGTTCCGCGCCGGNCTTCCTTCCGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL AU095647             [                                                                                                                                                                                                                                                                                 CCTACGTCCGCGACCTCGTNTCCGCCGCCGACTACGAGGCCGAGTGCCTC AAGCTCATCTCCCAGTTCAACTCCCTCTCCTCCTCGCTCGCCGGCGTCGTCACCATCCCCCGGTTCGTCGAGGCCTACCGCCTCGACTGCCCCGCCGCCC TCAACCGCCTCG TTCAG TCCGGCGTCCCCG CCACCG TCGAGC TCCGCGCCGCGGCGT  CC TCG TCCGCGCCGG C                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[-] EMBL CF326636             [                                                                                                                                                                                                                                                                                                                                                                                         CATCCCCCGGTTCGTCGAGGCCTACCGCCTCGACTGCCCCGCCGCCC TCAACCGCCTCG TGCAG TCTGGCGTCCCCG CCACCG TCGAGC TCCGCGCTGCGGCGT  CA T G TCCGCGCCGG  CTCC TCGGCGGCGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[-] EMBL AU093344             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               TGCGTCCAGAGCTTTATTACCGCCATGGATGCCGTCAAGCTCAACATGCTCGCCAACGACCAGGT CCG CCCCTTGCTCCACGACCTCTCGACCT CCATGGGGAAGCTGGGCCCCGTCCTGCCGCCGGACTTCGAAGGGAAGGTCAAGGTGAGCGAGTGGCT CGCCAAGCTAAATAAGATGGGGGCCGGGGATGAGCTCACCGAGCAACAGGCAAGGCAGCTCAACTTCGATCTGGATTCGGCGTACAGTGCGTTCATGGCATCACTGCCCAGCACCGGCCTATGAGCAAGCCTCATCCTGGTTCTGAGTTGGTTTCTTCTTTTTATTTTTCTCATGTGTTTTTCTATGGATCACCGCTGCAGTGTTATAGCCTTATAGGTATGTGTAACTTGAATTGTGCTATATTATTTGTCAATAATAGTGCCAATTTTGTGGTAACACATGC                                                         ]
[-] EMBL C29144               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           aAGGTCCCGCCCCCTTGCTCCACGACCTCTCGACCTCCCATGGGAAANCTGGGCCCCGTCCTGCCGCCGGACCTCGAAGGNAAGGTCAAGNTGAACGAGTGGCTCCGCCAAGCTAAATAAGATGGGGGCCGGGGATGAGCTCACCGAGCAACAGGCAAGGCAGCTCAACTTCGATCTGGATTCGGCGTACAGTGCGTTCATGGCATCACTGCCCAGCACCGGCCTATGAGCAAGCCTCATCCTGGTTCTGAGTTGGTTTCTTCTTTTTATTTTTCTCATGTGTTTTTCTATGGATCACCGCTGCAGTGTTATAGCCTTATAGGTATGTGTAACTTGAATTGTGCTATATTATTTGTCAATAATAGTGCCAATTTTGTGGTAACACATGC                                                         ]
[+] EMBL AU070438             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              AATAAGATGGGGGCCGGGGATGAGCTCACCGAGCAACAGGCAAGGCAGCTCAACTTCGATCTGGATTCGGCGTACAGTGCGTTCATGGCATCACTGCCCAGCACCGGCCTATGAGCAAGCCTCATCCTGGTTCTGAGTTGGTTNCNNCTTTTTATTTTTCNCATGTGTTTTNCTATGGATCACCGCTGCAGTGTTATAGCCTTATAGGTATGTGTAACTTGAATTGTGCTATATTATTTGTCAATAATAGTGCCAATTTTGTGGTAANACATGCTGTTATAATGAGTTCTGTGGCCTATTGGTTATAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_13993#0
CCCTCGCAATTCTTCGACCTCCTAAACTCCCCCATCGCGATCCCTCTCCTCCTCCTCTTT
CCCCAATCTCGCGCGACGCGGCGGAACCCTAGCCCCCACCGCGATTCGCTCGCCGGAGAG
GGAGAGGGAGGGAAGGGAGGCTAGGGGACCCCCTCGCCGGCGGCGGAGATGGAGGTGAAG
CTGTGGAACGACAAGCGGGAGCGGGAGCTCCTGGAGAGCCTCGCCGACCTGTACGCCATC
ATCAAGGCGACGGAGAAGCTGGAGCGCGCCTACGTCCGCGACCTCGTCTCCGCCGCCGAC
TACGAGGCCGAGTGCCTCAAGCTCATCTCCCAGTTCAACTCCCTCTCCTCCTCGCTCGCC
GGCGTCGTCACCATCCCCCGGTTCGTCGAGGCCTACCGCCTCGACTGCCCCGCCGCCCTC
AACCGCCTCGTTCAGTCCGGCGTCCCCGCCACCGTCGAGCTCCGCGCCGCGGCGTCCTCG
TCCGCGCCGGCCTCCTCCGCGGCGTCCGCGGCCGCCATCGCCCAGTGCGTCCAGAGCTTT
ATTACCGCCATGGATGCCGTCAAGCTCAACATGCTCGCCAACGACCAGGTCCGCCCCTTG
CTCCACGACCTCTCGACCTCCATGGGGAAGCTGGGCCCCGTCCTGCCGCCGGACTTCGAA
GGGAAGGTCAAGGTGAGCGAGTGGCTCGCCAAGCTAAATAAGATGGGGGCCGGGGATGAG
CTCACCGAGCAACAGGCAAGGCAGCTCAACTTCGATCTGGATTCGGCGTACAGTGCGTTC
ATGGCATCACTGCCCAGCACCGGCCTATGAGCAAGCCTCATCCTGGTTCTGAGTTGGTTT
CTTCTTTTTATTTTTCTCATGTGTTTTTCTATGGATCACCGCTGCAGTGTTATAGCCTTA
TAGGTATGTGTAACTTGAATTGTGCTATATTATTTGTCAATAATAGTGCCAATTTTGTGG
TAACACATGCTGTTATAATGAGTTCTGTGGCCTATTGGTTATAAAAAAAAAAAAAAAAAA
AAAAAAA

consensusID : consensus_13993#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 499
fasta sequence

                              [TGCGGCGTCCTCGTCCGCGCTGGCCTCCTCGGCGGCGTCCGCGGCCGCCATCGCCCAGTGCGTCCAGAGCTTTATTACCGCCATGGATGCCGTCAAGCTCAACATGCTCGCCAACGACCAGTTCCGCCCCTTGCTCCACGACCTCTCGACCTCCATGGGGAAGCTGGGCCCCGTCCTGCCGCCGGACTTCGAGGGGAAGGTCAAGGTGAGCGAGTGGCTCGCCAAGCTAAATAAGATGGGGGCCGGGGATGAGCTCACCGAGCAACAGGCAAGGCAGCTCAACTTCGATCTGGATTCGGCGTACAGTGCGTTCATGGCCTCGCTGCCCAGTACTGGCCTATGAGCAAGGATTGTCCTGGTTCAGAGTTGGTTTCTTCTTTCTTTTTCTCTTTGTTATGCGATTGTCTACGGATCATTACTGCAGTGTTATAGGTCTGTGTAACTTGAATTGTGCTACTATATTGTTTGTCAATAATAGCGCCAATTTTGTGATAAAAAA]

[+] EMBL CF327523             [TGCGGCGTCCTCGTCCGCGCTGGCCTCCTCGGCGGCGTCCGCGGCCGCCATCGCCCAGTGCGTCCAGAGCTTTATTACCGCCATGGATGCCGTCAAGCTCAACATGCTCGCCAACGACCAGTTCCGCCCCTTGCTCCACGACCTCTCGACCTCCATGGGGAAGCTGGGCCCCGTCCTGCCGCCGGACTTCGAGGGGAAGGTCAAGGTGAGCGAGTGGCTCGCCAAGCTAAATAAGATGGGGGCCGGGGATGAGCTCACCGAGCAACAGGCAAGGCAGCTCAACTTCGATCTGGATTCGGCGTACAGTGCGTTCATGGCCTCGCTGCCCAGTACTGGCCTATGAGCAAGGATTGTCCTGGTTCAGAGTTGGTTTCTTCTTTCTTTTTCTCTTTGTTATGCGATTGTCTACGGATCATTACTGCAGTGTTATAGGTCTGTGTAACTTGAATTGTGCTACTATATTGTTTGTCAATAATAGCGCCAATTTTGTGATAAAAA ]
[-] EMBL CF327524             [ GCGGCGTCCTCGTCCGCGCTGGCCTCCTCGGCGGCGTCCGCGGCCGCCATCGCCCAGTGCGTCCAGAGCTTTATTACCGCCATGGATGCCGTCAAGCTCAACATGCTCGCCAACGACCAGTTCCGCCCCTTGCTCCACGACCTCTCGACCTCCATGGGGAAGCTGGGCCCCGTCCTGCCGCCGGACTTCGAGGGGAAGGTCAAGGTGAGCGAGTGGCTCGCCAAGCTAAATAAGATGGGGGCCGGGGATGAGCTCACCGAGCAACAGGCAAGGCAGCTCAACTTCGATCTGGATTCGGCGTACAGTGCGTTCATGGCCTCGCTGCCCAGTACTGGCCTATGAGCAAGGATTGTCCTGGTTCAGAGTTGGTTTCTTCTTTCTTTTTCTCTTTGTTATGCGATTGTCTACGGATCATTACTGCAGTGTTATAGGTCTGTGTAACTTGAATTGTGCTACTATATTGTTTGTCAATAATAGCGCCAATTTTGTGATAAAAAA]




>consensus_13993#1
TGCGGCGTCCTCGTCCGCGCTGGCCTCCTCGGCGGCGTCCGCGGCCGCCATCGCCCAGTG
CGTCCAGAGCTTTATTACCGCCATGGATGCCGTCAAGCTCAACATGCTCGCCAACGACCA
GTTCCGCCCCTTGCTCCACGACCTCTCGACCTCCATGGGGAAGCTGGGCCCCGTCCTGCC
GCCGGACTTCGAGGGGAAGGTCAAGGTGAGCGAGTGGCTCGCCAAGCTAAATAAGATGGG
GGCCGGGGATGAGCTCACCGAGCAACAGGCAAGGCAGCTCAACTTCGATCTGGATTCGGC
GTACAGTGCGTTCATGGCCTCGCTGCCCAGTACTGGCCTATGAGCAAGGATTGTCCTGGT
TCAGAGTTGGTTTCTTCTTTCTTTTTCTCTTTGTTATGCGATTGTCTACGGATCATTACT
GCAGTGTTATAGGTCTGTGTAACTTGAATTGTGCTACTATATTGTTTGTCAATAATAGCG
CCAATTTTGTGATAAAAAA

consensusID : consensus_13993#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 229
fasta sequence

                              [CGATCCCTCTCCTCCTCCTCTTTCCCCAATCTCGCGCGACGCGGCGGAACCCTAGCCCCCACCGCGATTCGCTCGCCGGAGAGGGAGAGGGAGGGAAGGGAGGCTAGGGGACCCCCTCGCCGCCGACTACGAGGCCGAGTGCCTNAAGCTCATCTCCCAGTTCAACTCCCTNTCCTCCTCGCTCGCCGGCGTNGTNACCATCCCCCGGTTCGTCGAGGCCTACCGNCTN]

[+] EMBL AU182736             [CGATCCCTCTCCTCCTCCTCTTTCCCCAATCTCGCGCGACGCGGCGGAACCCTAGCCCCCACCGCGATTCGCTCGCCGGAGAGGGAGAGGGAGGGAAGGGAGGCTAGGGGACCCCCTCGCCGCCGACTACGAGGCCGAGTGCCTNAAGCTCATCTCCCAGTTCAACTCCCTNTCCTCCTCGCTCGCCGGCGTNGTNACCATCCCCCGGTTCGTCGAGGCCTACCGNCTN]




>consensus_13993#2
CGATCCCTCTCCTCCTCCTCTTTCCCCAATCTCGCGCGACGCGGCGGAACCCTAGCCCCC
ACCGCGATTCGCTCGCCGGAGAGGGAGAGGGAGGGAAGGGAGGCTAGGGGACCCCCTCGC
CGCCGACTACGAGGCCGAGTGCCTNAAGCTCATCTCCCAGTTCAACTCCCTNTCCTCCTC
GCTCGCCGGCGTNGTNACCATCCCCCGGTTCGTCGAGGCCTACCGNCTN

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13993#0      CCCTCGCAATTCTTCGACCTCCTAAACTCCCCCATCGCGAT-CCCTCTCCTCCTCCTCTT 59
consensus_13993#2      -------------------------------------CGAT-CCCTCTCCTCCTCCTCTT 22
consensus_13993#1      -----------------------------------TGCGGCGTCCTCGTCCGCGCTGGCC 25
                                                            **    ****  *  * *     

consensus_13993#0      TCCCCAATCTCGCGCGACGCGGCGGAACCCTAGCCCCCACCGCGATTCGCT--CGCCGGA 117
consensus_13993#2      TCCCCAATCTCGCGCGACGCGGCGGAACCCTAGCCCCCACCGCGATTCGCT--CGCCGGA 80
consensus_13993#1      TCCTCGGCGGCGTCCGCGGCCGCCATCGCCCAGTGCGTCCAGAGCTTTATTACCGCCATG 85
                       *** *     **  **  ** **     ** **  *   * * * **   *  ****   

consensus_13993#0      GAGGGAG--AGGGAGGGAAGGGAGGCTAGGGGACCCCCTCGCCGGCGGCGGAGATGGAGG 175
consensus_13993#2      GAGGGAG--AGGGAGGGAAGGGAGGCTAGGGGACCCCCTCGCCG---------------- 122
consensus_13993#1      GATGCCGTCAAGCTCAACATGCTCGCCAACGACCAGTTCCGCCCCTTGCTCCACGACCTC 145
                       ** *  *  * *      * *   ** *  *  *     ****                 

consensus_13993#0      TGAAGCTGTGGAACGACAAGCGGGAGCGGGAGCTCCTGGAGAGCCTCGCCGACCTGTACG 235
consensus_13993#2      ------------------------------------------------------------
consensus_13993#1      TCGACCTCCATGGGGAAGCTGGGCCCCGTCCTGCCGCCGGACTTCGAGGGGAAGGTCAAG 205
                                                                                   

consensus_13993#0      CCATCATCAAGGCGACGGAGAAGCTGGAGCGCGCCTACGTCCGCGACCTCGTCTCCGCCG 295
consensus_13993#2      ------------------------------------------------------------
consensus_13993#1      GTGAGCGAGTGGCTCGCCAAGCTAAATAAGATGGGGGCCGGGGATGAGCTCACCGAGCAA 265
                                                                                   

consensus_13993#0      CCGACTACGAGGCCGAGTGCCTCAAGCTCATCTCCCAGTTCAACTCCCTCTCCTCCTCGC 355
consensus_13993#2      CCGACTACGAGGCCGAGTGCCTNAAGCTCATCTCCCAGTTCAACTCCCTNTCCTCCTCGC 182
consensus_13993#1      CAGGCAAGGCAGCTCAA--CTTCGATCTGGATTCGGCGTACAGTGCGTTCATGGCCTCGC 323
                       * * * * *  **  *   * *  * **    **   ** **   *  *     ******

consensus_13993#0      TCGCCGGCGTCGTCACCATCCCCCGGTTCGTCGAGGCCTACCGCCTCGACTGCCCCGCCG 415
consensus_13993#2      TCGCCGGCGTNGTNACCATCCCCCGGTTCGTCGAGGCCTACCGNCTN------------- 229
consensus_13993#1      TGCCCAGTACTGGCCTATGAGCAAGGATTGTCCTGGTTCAGAGTTGGTTTCTTCTTTCTT 383
                       *  ** *    *         *  ** * ***  **   *  *                 

consensus_13993#0      CCCTCAACCGCCTCGTTCAGTCCGGCGTCCCCGCCACCGTCGAGCTCCGCGCCGCGGCGT 475
consensus_13993#2      ------------------------------------------------------------
consensus_13993#1      TTTCTCTTTGTTATGCGATTGTCTACGGATCATTACTGCAGTGTTATAGGTCTGTGTAAC 443
                                                                                   

consensus_13993#0      CCTCGTCCGCGCCGGCCTCCTCCGCGGCGTCCGCGGCCGCCATCGCCCAGTGCGTCCAGA 535
consensus_13993#2      ------------------------------------------------------------
consensus_13993#1      TTGAATTGTGCTACTATATTGTTTGTCAATAATAGCGCCAATTTTGTGATAAAAAA---- 499
                                                                                   

consensus_13993#0      GCTTTATTACCGCCATGGATGCCGTCAAGCTCAACATGCTCGCCAACGACCAGGTCCGCC 595
consensus_13993#2      ------------------------------------------------------------
consensus_13993#1      ------------------------------------------------------------
                                                                                   

consensus_13993#0      CCTTGCTCCACGACCTCTCGACCTCCATGGGGAAGCTGGGCCCCGTCCTGCCGCCGGACT 655
consensus_13993#2      ------------------------------------------------------------
consensus_13993#1      ------------------------------------------------------------
                                                                                   

consensus_13993#0      TCGAAGGGAAGGTCAAGGTGAGCGAGTGGCTCGCCAAGCTAAATAAGATGGGGGCCGGGG 715
consensus_13993#2      ------------------------------------------------------------
consensus_13993#1      ------------------------------------------------------------
                                                                                   

consensus_13993#0      ATGAGCTCACCGAGCAACAGGCAAGGCAGCTCAACTTCGATCTGGATTCGGCGTACAGTG 775
consensus_13993#2      ------------------------------------------------------------
consensus_13993#1      ------------------------------------------------------------
                                                                                   

consensus_13993#0      CGTTCATGGCATCACTGCCCAGCACCGGCCTATGAGCAAGCCTCATCCTGGTTCTGAGTT 835
consensus_13993#2      ------------------------------------------------------------
consensus_13993#1      ------------------------------------------------------------
                                                                                   

consensus_13993#0      GGTTTCTTCTTTTTATTTTTCTCATGTGTTTTTCTATGGATCACCGCTGCAGTGTTATAG 895
consensus_13993#2      ------------------------------------------------------------
consensus_13993#1      ------------------------------------------------------------
                                                                                   

consensus_13993#0      CCTTATAGGTATGTGTAACTTGAATTGTGCTATATTATTTGTCAATAATAGTGCCAATTT 955
consensus_13993#2      ------------------------------------------------------------
consensus_13993#1      ------------------------------------------------------------
                                                                                   

consensus_13993#0      TGTGGTAACACATGCTGTTATAATGAGTTCTGTGGCCTATTGGTTATAAAAAAAAAAAAA 1015
consensus_13993#2      ------------------------------------------------------------
consensus_13993#1      ------------------------------------------------------------
                                                                                   

consensus_13993#0      AAAAAAAAAAAA 1027
consensus_13993#2      ------------
consensus_13993#1      ------------