These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13997#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 3007 fasta sequence [GACATGCATGCCATTCAAGAATCAGATAAAGTGATTGAAGATGCAGAAGAAAAACAAGGAATGCAAAATGAAGACAATGTTGTTCACCATGATGAATCTCTGGTCACAACTCAAAAGGAAGAGGCATCCCAAGTGCATACTGATGAACAATACAGTGCAGACACTAAAATGGATGATACCGCAATTTCCTATGCAGAAATGACACATGAAAATACAAGTACAGAGCCCAGAGAAGTTGAAGATACAAAGGAAAAGAAAGGATTCAATGACTTTCCAGAATTTGTTGTAGAAACATCCAAACAGGATGATGTTGACCAAGACTTTAGCATTCATCACCAGGTTGAAGATGAAAAGTCGGCAGAAACAGAGAACAATAGCGCAGAATCTGAAGCTGTGCAACCAAAACTTGATATAACGATTGCTGAGACAAATAATGACAATAATTTGTCTACAATCAATCCCTTGCCTGAGCATGAAACAGAAAATGCCTCAGATATAAATCAAAACAGACAATATCAGGAAGCAACCAATGAAGATGCTATCGACAACATTGAAACTGGTCGTGTCGAGAAAATGGAGACAAGCTATACTGCAACAACTGAAGTGGTCACACTCAATGAAGATATCTGCGATAAGGCTAGTGGAGCTGATGGAGTACCACCTGATGGAAGTCTTAAGACATCTGAGGACAACCTTGATGTTTCATCTGTAGTTACAGAATCAGAGGGAGAAAATATTAACAAGGAGACGGAAGATCACAAGCTTGCTCTTCCTGTGCATCCTACACAGGATGAAAACACAACTGAGCAGGGATTTGGTTTGGAAGATACAGAAAAAGAGTCCATGTCACCAGAGAAGGCACTGCCTGCTGAACCAGAGGAGCAAGAAGAGAATCAAGTAACCAAAGAACAAGATGAAGAAGACAGGCATGATGCAGAACTTGGTGATGCACATGAAGAAGATCACAAAGAAGCTGAACAAGATTATTTGCCTGTCTCTAGTTTCCTGATGAACCTAATATTGGGAAAAGACAATGATGATCCAAAGAAAGATTCAGAAACCGAGGTTGAAAAGGAGCAAGAAGAAACAACGAAGGATGGAAGTTGTTTGATCGCTTCTCAACAAGAAGAAAATTTGGTGGCATTTCCTATAGAAAAATCGGTGGATGAAAAACTCACCTTTGAACAAGAAAAAGAAAAGGTAGAAGGCTCTGAAGAAACAAAAGAACCAGTAAAAGAACAGAGTTATGATGTCGAGATGGACGTCCAAAAATCATTGGAAACTGATGAAGAGCTCAAAAGGAACACTTGTGATTTGGAAGCACCAGTATACCAAGATAATGCCCAGGATGAAATTTCTAGCAAACTGATATCAGCCAAGGCAGCTGATCCGATCAAAAAAATGGAAGCTAGAGACTTTGAATTGGATGAAGAGTCATTTGATACAGTTTGTCAGGAAAACGTGGAAGCAGCAACAGAAATTGAAGACGGAAGCTTGAATAGGGACCAAGATGACATAACAAGCCCAAAGGCTTCACAAGAGGATGCTTTGGAGGAAGTAGGAACAGAACTTCCGCATGAGTCTTTACATGAAAATAGACATGGTGCAAAGGATGAGCAAACACTCTCCTTGATAG-AACCCGATACAGGCAACGCTGAAAAATTGCCTAACGAGGCTGACAGTGTTCAAAGCCCTCCTTGCACAGAACAAGAAGAGTCCATTGAATCTTCCTATGTTGAAGTGAGAAGTACTACTGAGGGTCAAGTGGAGAGTGAAGTAATAGAAACGAATGAGGAGGACCAGCATACGACCGCAGGTGGACATACTGAAGAACAGATAGAAAATTTACATGATGATAAGTCGAAAGAAACATGTTCTGAAGAAATATCTGATGAGCAGGCACCTGAAATAACTGAACCAGTTAGCCACACTGATCGAAATTTTGCTTATGAAAAGGAAATTCCTGCAAGTTCGACATGCATGGACAAGAAAGAGAGTATGATCTCAAACAATGAAGTCAGCAACTTTGAAAAAGCCCTTGAGACACACTCAGATAGTCCAAATTTGCATGTTAACCAAGATAAGAAAGATGAAACAGCTGATAACCAAACT-GTGGTGGACCATAACACCGTGTTAGACAAGCTTGAAGATTCTAATCGGCAGGAGGAGCAGGAAACTGCTGCACAGAAGTTACCAAAAGAAACTGAAGGAAACCAGGAATTTATGGCAATAACAGAGCCTGTGATCAAAGAAGAGAATGTACATGAAACAGTTGAAGGTAACACTCAAGCAGTGAAGATAAAATCTAATGAAGAGAAAGAACTTTTTGATTCACAGGTTCAGGAACGTGGTCTCAATGTGGTTTCACCCAAAGCAACTTCTGAGGCCGACGAAAAATTTGTGGAGATAACAAAGCCAGAATTCAGCACAGATGAAGAACATAGTCCAAAGGCGGATGAATCAAATAAGCCAGACGAGAATACTTGTGATGAGAAAACAAAGGCTGAAGAGGAAACTAATAATATCACTGATGAAGCAACAGTG-AAAATAGAAGAACGAGGAGCAGAACAGAAGGTATCACATAAAAAACATAACATTTTGTCTGGTGTTGGATCAAAGGTGAAGCATCAACTAGCAAAAGTGAAGAAAGCCATCATAGGTAAACCTGGGCACACAAAGTCTGAATCACCAAAATCATAAAATTGATTCACCTTAGAGCATGTAATTCTTGTACAATATGTATTTTTGTAAGGAATTTATGTGAGGTGTAGGATATTGCAATGGGTTTAGTGAACCATCTGTAATTTTGTATGAACGATTCATTCAAAGGTTGTGTTCTTAAGGACGCTTGTAAATATAGGCAGGCAGTGTGTAGTTCAAGTTTCCATAAACTTTGTAATTGTTTCACCAACTTGGTGTGAGGTGAACAACATGTACATGGCATATTGTTTTTGTTACTTCCTCATTGATATGCATGTGTTGTTTTGTGGTAAAAAAGCAACAAAAA] [+] EMBL AK105854 [GACATGCATGCCATTCAAGAATCAGATAAAGTGATTGAAGATGCAGAAGAAAAACAAGGAATGCAAAATGAAGACAATGTTGTTCACCATGATGAATCTCTGGTCACAACTCAAAAGGAAGAGGCATCCCAAGTGCATACTGATGAACAATACAGTGCAGACACTAAAATGGATGATACCGCAATTTCCTATGCAGAAATGACACATGAAAATACAAGTACAGAGCCCAGAGAAGTTGAAGATACAAAGGAAAAGAAAGGATTCAATGACTTTCCAGAATTTGTTGTAGAAACATCCAAACAGGATGATGTTGACCAAGACTTTAGCATTCATCACCAGGTTGAAGATGAAAAGTCGGCAGAAACAGAGAACAATAGCGCAGAATCTGAAGCTGTGCAACCAAAACTTGATATAACGATTGCTGAGACAAATAATGACAATAATTTGTCTACAATCAATCCCTTGCCTGAGCATGAAACAGAAAATGCCTCAGATATAAATCAAAACAGACAATATCAGGAAGCAACCAATGAAGATGCTATCGACAACATTGAAACTGGTCGTGTCGAGAAAATGGAGACAAGCTATACTGCAACAACTGAAGTGGTCACACTCAATGAAGATATCTGCGATAAGGCTAGTGGAGCTGATGGAGTACCACCTGATGGAAGTCTTAAGACATCTGAGGACAACCTTGATGTTTCATCTGTAGTTACAGAATCAGAGGGAGAAAATATTAACAAGGAGACGGAAGATCACAAGCTTGCTCTTCCTGTGCATCCTACACAGGATGAAAACACAACTGAGCAGGGATTTGGTTTGGAAGATACAGAAAAAGAGTCCATGTCACCAGAGAAGGCACTGCCTGCTGAACCAGAGGAGCAAGAAGAGAATCAAGTAACCAAAGAACAAGATGAAGAAGACAGGCATGATGCAGAACTTGGTGATGCACATGAAGAAGATCACAAAGAAGCTGAACAAGATTATTTGCCTGTCTCTAGTTTCCTGATGAACCTAATATTGGGAAAAGACAATGATGATCCAAAGAAAGATTCAGAAACCGAGGTTGAAAAGGAGCAAGAAGAAACAACGAAGGATGGAAGTTGTTTGATCGCTTCTCAACAAGAAGAAAATTTGGTGGCATTTCCTATAGAAAAATCGGTGGATGAAAAACTCACCTTTGAACAAGAAAAAGAAAAGGTAGAAGGCTCTGAAGAAACAAAAGAACCAGTAAAAGAACAGAGTTATGATGTCGAGATGGACGTCCAAAAATCATTGGAAACTGATGAAGAGCTCAAAAGGAACACTTGTGATTTGGAAGCACCAGTATACCAAGATAATGCCCAGGATGAAATTTCTAGCAAACTGATATCAGCCAAGGCAGCTGATCCGATCAAAAAAATGGAAGCTAGAGACTTTGAATTGGATGAAGAGTCATTTGATACAGTTTGTCAGGAAAACGTGGAAGCAGCAACAGAAATTGAAGACGGAAGCTTGAATAGGGACCAAGATGACATAACAAGCCCAAAGGCTTCACAAGAGGATGCTTTGGAGGAAGTAGGAACAGAACTTCCGCATGAGTCTTTACATGAAAATAGACATGGTGCAAAGGATGAGCAAACACTCTCCTTGATAG AACCCGATACAGGCAACGCTGAAAAATTGCCTAACGAGGCTGACAGTGTTCAAAGCCCTCCTTGCACAGAACAAGAAGAGTCCATTGAATC ] [+] EMBL CB666042 [ ACTTGA CCAACGATTGCTGAAACAAATAATGACAATAATTTGTCTACAATCAATCCCTTGCCTGAGCATGAAACAGAAAATGCCTCATATATAAATCAAAACATACAATATCAAGAAGCAACCGATGAAGATGCTATCGACCACATTGAAACTGGTCGTGTCAAGAAAATGGAGACAAGCTATACTGCAACAACTGAAGTGGTCACACTCAATGAAGATATCTGCGATAAGGCTAGTGGAGCTGATGGAGTACCACCTGATGGAAGTCTTAAGACATCTGAGGACAACCTTGATGTTTCATCTGTAGTTACAGAATCAGAGGGAGAAAATATTAACAAGGAGACGGAAGATCACAAGCTTGCTCTTCCTGTGCATCCTACACAGGATGAAAACACAACTGACCACGGATTTGGTTTGGAAGATACAGAAAAAGAGTCCATGTCACCATAGAAGGCACTGCCTGCTGAACCACAGGAGCAAGAAGAGAATCTAGTAACCAAAGAACTAGATGAACAAGACAGGCATGATGCATAACTTGGTGATGCACATGAAGAAGATCACAAAGAAGCTGAACAAGATTATTTGCCTGTCTCTAGTTTCCTGATGAACCTAATATTGGGAAAAGACAATGATGATCCAAAGAAAGATTCAGAAACCGAGGTTGAAAAGGAGCAATAAGAAACAACGAAGGATGGAAGTTGTTTGATCGCT ] [+] EMBL CF197089 [ AAAGGAGCAAGAAGAAACAACGAAGGATGGAAGTTGTTNNNNCGCTTCTCAACAAGAAGAAAATTTGGTGGCATTTCCTATAGAAAAATCGGTGGATGAAAAACTCACCTTTGAACAAGAAAAAGAAAAGGTAGAAGGCTCTGAAGAAACAAAAGAACCAGTAAAAGAACAGAGTTATGATGTCGAGATGGACGTCCAAAAATCATTGGAAACTGATGAAGAGCTCNNAAGGAACACTTGTGATTTGGAAGCACCAGTATACCAAGATAATGCCCAGGATGAAATTTCTAGCAAACTGATATCAGCNNAGGCAGCTGATCNNNTCAAAAAAATGGANGNNNNNNNNTTTGAATTGGATGAAG ] [+] EMBL CB636773 [ AGTAAAAGAACACCATTATGATGTCGAGATGGACGTCCAAAAATCATTGGAAACTGATGAAGAGCTCAAAAGGAACACTTGTGATTTGGAAGCACCAGTATACCAAGATAATGCCCAGGATGAAATTTCTAGCAAACTGTTTTTATCCAAGGCAGCTGATCCGATCAAAAAAATGGAAGCTAGAGACTTTGAATTGGATGAAGAGTCATTTGATACAGTTTGTCAGGAAAACGTGGAAGCAGCAACAGAAATTGAAGACGGAAGCTTGAATAGGGACCAAGATGACATAACAAGCCCAAAGGCTTCACAAGAGGATGCTTTGGAGGAAGTAGGAACACAACTTCCGCATGAGTC ] [+] EMBL AK060381 [ GTTATGATGTCGAGATGGACGTCCAAAAATCATTGGAAACTGATGAAGAGCTCAAAAGGAACACTTGTGATTTGGAAGCACCAGTATACCAAGATAATGCCCAGGATGAAATTTCTAGCAAACTGATATCAGCCAAGGCAGCTGATCCGATCAAAAAAATGGAAGCTAGAGACTTTGAATTGGATGAAGAGTCATTTGATACAGTTTGTCAGGAAAACGTGGAAGCAGCAACAGAAATTGAAGACGGAAGCTTGAATAGGGACCAAGATGACATAACAAGCCCAAAGGCTTCACAAGAGGATGCTTTGGAGGAAGTAGGAACAGAACTTCCGCATGAGTCTTTACATGAAAATAGACATGGTGCAAAGGATGAGCAAACACTCTCCTTGATAG AACCCGATACAGGCAACGCTGAAAAATTGCCTAACGAGGCTGACAGTGTTCAAAGCCCTCCTTGCACAGAACAAGAAGAGTCCATTGAATCTTCCTATGTTGAAGTGAGAAGTACTACTGAGGGTCAAGTGGAGAGTGAAGTAATAGAAACGAATGAGGAGGACCAGCATACGACCGCAGGTGGACATACTGAAGAACAGATAGAAAATTTACATGATGATAAGTCGAAAGAAACATGTTCTGAAGAAATATCTGATGAGCAGGCACCTGAAATAACTGAACCAGTTAGCCACACTGATCGAAATTTTGCTTATGAAAAGGAAATTCCTGCAAGTTCGACATGCATGGACAAGAAAGAGAGTATGATCTCAAACAATGAAGTCAGCAACTTTGAAAAAGCCCTTGAGACACACTCAGATAGTCCAAATTTGCATGTTAACCAAGATAAGAAAGATGAAACAGCTGATAACCAAACT GTGGTGGACCATAACACCGTGTTAGACAAGCTTGAAGATTCTAATCGGCAGGAGGAGCAGGAAACTGCTGCACAGAAGTTACCAAAAGAAACTGAAGGAAACCAGGAATTTATGGCAATAACAGAGCCTGTGATCAAAGAAGAGAATGTACATGAAACAGTTGAAGGTAACACTCAAGCAGTGAAGATAAAATCTAATGAAGAGAAAGAACTTTTTGATTCACAGGTTCAGGAACGTGGTCTCAATGTGGTTTCACCCAAAGCAACTTCTGAGGCCGACGAAAAATTTGTGGAGATAACAAAGCCAGAATTCAGCACAGATGAAGAACATAGTCCAAAGGCGGATGAATCAAATAAGCCAGACGAGAATACTTGTGATGAGAAAACAAAGGCTGAAGAGGAAACTAATAATATCACTGATGAAGCAACAGTG AAAATAGAAGAACGAGGAGCAGAACAGAAGGTATCACATAAAAAACATAACATTTTGTCTGGTGTTGGATCAAAGGTGAAGCATCAACTAGCAAAAGTGAAGAAAGCCATCATAGGTAAACCTGGGCACACAAAGTCTGAATCACCAAAATCATAAAATTGATTCACCTTAGAGCATGTAATTCTTGTACAATATGTATTTTTGTAAGGAATTTATGTGAGGTGTAGGATATTGCAATGGGTTTAGTGAACCATCTGTAATTTTGTATGAACGATTCATTCAAAGGTTGTGTTCTTAAGGACGCTTGTAAATATAGGCAGGCAGTGTGTAGTTCAAGTTTCCATAAACTTTGTAATTGTTTCACCAACTTGGTGTGAGGTGAACAACATGTACATGGCATATTGTTTTTGTTACTT ] [+] EMBL CB672127 [ TACAGCCTGTCAGGAAAACGTGGAAGCAGCAACAGAAATTGAAGACGGAAGCTTGAATAGGGACCAAGATGACATAACAAGCCCAAAGGCTTCACAAGAGGATGCTTTGGAGGAAGTAGGAACAGAACTTCCGCATGAGTCTTTACATGAAAATAGACATGGTGCAAAGGATGAGCAAACACTCTCCTTGATAG AACCCGATACAGGCAACGCTGAAAAATTGCCTAACGAGGCTGACAGTGTTCAAAGCCCTCCTTGCACAGAACAAGAAGAGTCCATTGAATCTTCCTATGTTGAAGTGAGAAGTACTACTGAGGGTCAAGTGGAGAGTGAAGTAATAGAAACGAATGAGGAGGACCAGCATACGACCGCAGGTGGACATACTGAAGAACAGATAGAAAATTTACATGATGATAAGTCGAAAGAAACATGTTCTGAAGAAATATCTGATGAGCAGGCACCTGAAATAACTGAACCAGTTAGCCACACTGATCGAAATTTTGCTTATGAAAAGGAAATTCCTGCAAGTTCGACATGCATGGACAAGAAAGAGAGTATGATCTCAAACAATGAAGTCAGCAACTTTGAAAAAGCCCTTGAGACACACTCAGATAGTCCAAATTTGCATGTTAACCAAGATAAGAAAGATGAAACAGCTGATAACCAAACT GTGGTGGACCATAACACCGTGTTAGACAAGCTTGAAGATTCTAATCGGCAGGAGGAGCAGGAA ] [+] EMBL CF312945 [ gaaggagTAGAAACCCGATACAGGCAACGCTGAAAAATTGCCTAACGAGGCTGACAGTGTTCAAAGCCCTCCTTGCACAGAACAAGAAGAGTCCATTGAATCTTCCTATGTTGAAGTGAGAAGTACTACTGAGGGTCAAGTGGAGAGTGAAGTAATAGAAACGAATGAGGAGGACCAGCATACGACCGCAGGTGGACATACTGAAGAACAGATAGAAAATTTACATGATGATAAGTCGAAAGAAACATGTTCTGAAGAAATATTTGATGAGCAGGCACCTGAAATAACTGAACCAGTTAGCCACACTGATCGAAATTTTGCTTATGAAAAGGAAATTCCTGCAAGTTCGACATGCATGGACAAGAAAGAGAGTATGATCTCAAACAATGAAGTCAGCAACTTTGAAAAAGCCCTTGAGACACACTCAGATAGTCCAAATTTGCATGTTAACCAAGATAAGAAAGATGAAACAGCTGATAACCAAACTGGTGGTGGACCATAACACCGTGTTAGACAAGCTTGAAGATTCTAATCGGCAGGAGGAGC ] [-] EMBL CB666043 [ TCTAATCGGCAGGAGGAGCAGGAAACTGCTGCACAGAAGTTACCAAAAGAAACTGAAGGAAACCAGGAATTTATGGCAATAACAGAGCCTGTGATCAAAGAAGAGAATGTACATGAAACAGTTGAAGGTAACACTCAAGCAGTGAAGATAAAATCTAATGAAGAGAAAGAACTTTTTGATTCACAGGTTCAGGAACGTGGTCTCAATGTGGTTTCACCCAAAGCAACTTTTGAGGCCGACGAAAAATTTGTGGAGATAACAAAGCCAGAATTCAGCCCAGATGAAGAACATAGTCCAAAGGCGGATGAATCAAATAAGCCAGACGAGAATACTTGTGATGAGAAAACAAAGGCTGAAGAGGAAACTAATAATATCCCTGATGAAGCACCAGTG AAAATAGAAGAACGAGGAGCAGAACAGAAGGTATCACATAAAAAACATAACATTTTGTCTGGTGTTGGATCAAAGGTGAAGCATCAACTAGCAAAAGTGAAGAAAGCCATCATAGGTAAACCTGGGCACACAAAGTTTGAATCCCCAAAATCATAAAATTGATTCCCCTTAGAGCATGTAATTCTTGTACAATATGTATTTTTGTAAGGAATTTATGTGAGGTGTAGGATATTGCAATGGGTTTAGTGAACCATCTGTAATTTTGTATGAACGATTCATTCAAAGGTTGTGTTCTTAAGGACGCTTGTAAATATAGGCAGGCAGTGTGTAGTTCAAGTTTCCATAAACTTTGT ] [+] EMBL AF358772 [ AGTTGAAGGTAACACTCAAGCAGTGAAGATAAAATCTAATGAAGAGAAAGAACTTTTTGATTCACAGGTTCAGGAACGTGGTCTCAATGTGGTTTCACCCAAAGCAACTTCTGAGGCCGACGAAAAATTTGTGGAGATAACAAAGCCAGAATTCAGCACAGATGAAGAACATAGTCCAAAGGCGGATGAATCAAATAAGCCAGACGAGAATACTTGTGATGAGAAAACAAAGGCTGAAGAGGAAACTAATAATATCACTGATGAAGCAACAGTG AAAATAGAAGAACGAGGAGCAGAACAGAAGGTATCACATAAAAAACATAACATTTTGTCTGGTGTTGGATCAAAGGTGAAGCATCAACTAGCAAAAGTGAAGAAAGCCATCATAGGTAAACCTGGGCACACAAAGTCTGAATCACCAAAATCATAAAATTGATTCACCTTAGAGCATG ] [-] EMBL CF312946 [ TGTGGAGATAACAAAGCCAGAATTCAGCACAGATGAAGAACATAGTCCAAAGGCGGATGAATCAAATAAGCCAGACGAGAATACTTGTGATGAGAAAACAAAGGCTGAAGAGGAAACTAATAATATCACTGATGAAGCAACAGTG AAAATAGAAGAACGAGGAGCAGAACAGAAGGTATCACATAAAAAACATAACATTTTGTCTGGTGTTGGATCAAAGGTGAAGCATCAACTAGCAAAAGTGAAGAAAGCCATCATAGGTAAACCTGGGCACACAAAGTCTGAATCACCAAAATCATAAAATTGATTCACCTTAGAGCATGTAATTCTTGTACAATATGTATTTTTGTAAGGAATTTATGTGAGGTGTAGGATATTGCAATGGGTTTAGTGAACCATCTGTAATTTTGTATGAACGATTCATTCAAAGGTTGTGTTCTTAAGGACGCTTGTAAATATAGGCAGGCAGTGTGTAGTTCAAGTTTCCATAAACTTTGTAATTGTTTCACCAACTTGGTGTGAGGTGAACAACATGTACATGGCATATTGTTTTTGTTACTTCCTCATTGATATGCATGTGTTGTTTTGTGGTAAAAAA ] [+] EMBL BI811447 [ GATACCAA CCAGAATTCAGCACAGATGAAGAACATAGTCCAA GCGGATGAATC AATAA CCAGACGAGAATACTTGTGATGAGAAAAC AAGGCTGAAGAGGAAACTAATAATATCACTGATGAAGCCACAGTGAAAAATAGAAGAACGAGGA CAGAACAGAAGGTATCACATAAAAAACATAACATTTTGTCTGGTGTTGGATCAAAGGTGAAGCATCAACTA C AAAGTGAAGAAA CCATCATAGGTAAACCTGGGCACAC AAGTCTGAATCACC AAATCATAAAATTGATTCACCTTAGAGCATGTAATTCTTGTAC ATATGTATTTTTGTAAGGAATTTATGTGAGGTGTAGGATATTGC ATGGGTTTAGTGAACCATCTGTAATTTTGTATGAACGATTCATTCAAAGGTTGTGTTCTTAAGGACGCTTGTAAATATAGCCACGCCGTGTGTAGTTC ] [+] EMBL BP184817 [ ACAGATGAAGAACATAGTCCAAAGGCGGATGAATCAAATAAGCCAGACGAGAATACTTGTGATGAGAAAACAAAGGCTGAAGAGGAAACTAATAATATCACTGATGAAGCAACAGTG AAAATAGAAGAACGAGGAGCAGAACAGAAGGTATCACATAAAAAACATAACATTTTGTCTGGTGTTGGATCAAAGGTGAAGCATCAACTAGCAAAAGTGAAGAAAGCCATCATAGGTAAACCTGGGCACACAAAGTCTGAATCACCAAAATCATAAAATTGATTCACCTTAGAGCATGTAATTCTTGTACAATATGTATTTTTGTAAGGAATTTATGTGAGGTGTAGGATATTGCAATGGGTTTAGTGAACCATCTGTAATTTTGTATGAACGATTCATTCAAAGGTTGTGTTCTTAAGGACGCTTGTAAATATAGGCAGGCAGTGTGTAGTTCAAGTTTCCATAAACTTTGTAATTGTTTCACCAACTTGGTGTGAGGTGAACAACATGTACATGGCATATTGTTTTTGTTACTTCCTCATTGATATGCATGTGTTGTTTTGTGGTAATCATGCAACAAAAA] [+] EMBL BI812660 [ GTGTTGGATCAAAGGTGAAGCATCAACTAGCCAAAGTGAAGAAAGCCATCATAGGTAAACCTGGGCACACCAAGTCTGAATCACC AAATCATAAAATTGATTCACCTTAGAGCATGTAATTCTTGTAC ATATGTATTTTTGTAAGGAATTTATGTGAGGTGTAGGATATTGCAATGGGTTTAGTGAACCATCTGTAATTTTGTATGAACGATTCATTCAAAGGTTGTGTTCTTAAGGACGCTTGTAAATATAGGCAGGCAGTGTGTAGTTCAAGTTTCCATAAACTTTGTAATTGTTTCACCAACTTGGTGTGAGGTGAAC ACATGTACATGGCATATTGTTTTTGTTACTTCCTCATTGATATGCATGTGTTGTTTTGTGGTAAAAAAaa ] consensusID : consensus_13997#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 418 fasta sequence [ATAATATCGCTGATGAAGCAACAGTGAAAATAGAAGAACGAGGAGCAGAACAGAAGGTATCACATAAAGAACATAACATTTTGTCTGGTGTTGGATCAAAGGTGAAGCATCAACTAGCAAAAGTGAAGAAAGCCATCATAGGTAAACCTGGGCACACAAAGTCTGAATCACCAAAATCATAAAATTGATTCACCTTAGAGCATGTAATTCTTGTACAATATGTATTTTTGTAAGGAATTTATGTGAGGTGTAGGATATTGCAATGGGTTTAGTGAACCATCTGTAATTTTGTATGAACGATTCATTCAAAGGTTGTGTTCTTAAGGACGCTTGTAAATATAGGCAGGCAGTGTGTAGTTCAAGTTTCCATGAACTTTGTTATTGTTTCCCCGGCCTGCTATAAAGGTTTTTTAGTATT] [-] EMBL CB636772 [ATAATATCGCTGATGAAGCAACAGTGAAAATAGAAGAACGAGGAGCAGAACAGAAGGTATCACATAAAGAACATAACATTTTGTCTGGTGTTGGATCAAAGGTGAAGCATCAACTAGCAAAAGTGAAGAAAGCCATCATAGGTAAACCTGGGCACACAAAGTCTGAATCACCAAAATCATAAAATTGATTCACCTTAGAGCATGTAATTCTTGTACAATATGTATTTTTGTAAGGAATTTATGTGAGGTGTAGGATATTGCAATGGGTTTAGTGAACCATCTGTAATTTTGTATGAACGATTCATTCAAAGGTTGTGTTCTTAAGGACGCTTGTAAATATAGGCAGGCAGTGTGTAGTTCAAGTTTCCATGAACTTTGTTATTGTTTCCCCGGCCTGCTATAAAGGTTTTTTAGTATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13997#0 GACATGCATGCCATTCAAGAATCAGATAAAGTGATTGAAGATGCAGAAGAAAAACAAGGA 60 consensus_13997#1 ------------------------------------------------------------ consensus_13997#0 ATGCAAAATGAAGACAATGTTGTTCACCATGATGAATCTCTGGTCACAACTCAAAAGGAA 120 consensus_13997#1 ------------------------------------------------------------ consensus_13997#0 GAGGCATCCCAAGTGCATACTGATGAACAATACAGTGCAGACACTAAAATGGATGATACC 180 consensus_13997#1 ------------------------------------------------------------ consensus_13997#0 GCAATTTCCTATGCAGAAATGACACATGAAAATACAAGTACAGAGCCCAGAGAAGTTGAA 240 consensus_13997#1 ------------------------------------------------------------ consensus_13997#0 GATACAAAGGAAAAGAAAGGATTCAATGACTTTCCAGAATTTGTTGTAGAAACATCCAAA 300 consensus_13997#1 ------------------------------------------------------------ consensus_13997#0 CAGGATGATGTTGACCAAGACTTTAGCATTCATCACCAGGTTGAAGATGAAAAGTCGGCA 360 consensus_13997#1 ------------------------------------------------------------ consensus_13997#0 GAAACAGAGAACAATAGCGCAGAATCTGAAGCTGTGCAACCAAAACTTGATATAACGATT 420 consensus_13997#1 ------------------------------------------------------------ consensus_13997#0 GCTGAGACAAATAATGACAATAATTTGTCTACAATCAATCCCTTGCCTGAGCATGAAACA 480 consensus_13997#1 ------------------------------------------------------------ consensus_13997#0 GAAAATGCCTCAGATATAAATCAAAACAGACAATATCAGGAAGCAACCAATGAAGATGCT 540 consensus_13997#1 ------------------------------------------------------------ consensus_13997#0 ATCGACAACATTGAAACTGGTCGTGTCGAGAAAATGGAGACAAGCTATACTGCAACAACT 600 consensus_13997#1 ------------------------------------------------------------ consensus_13997#0 GAAGTGGTCACACTCAATGAAGATATCTGCGATAAGGCTAGTGGAGCTGATGGAGTACCA 660 consensus_13997#1 ------------------------------------------------------------ consensus_13997#0 CCTGATGGAAGTCTTAAGACATCTGAGGACAACCTTGATGTTTCATCTGTAGTTACAGAA 720 consensus_13997#1 ------------------------------------------------------------ consensus_13997#0 TCAGAGGGAGAAAATATTAACAAGGAGACGGAAGATCACAAGCTTGCTCTTCCTGTGCAT 780 consensus_13997#1 ------------------------------------------------------------ consensus_13997#0 CCTACACAGGATGAAAACACAACTGAGCAGGGATTTGGTTTGGAAGATACAGAAAAAGAG 840 consensus_13997#1 ------------------------------------------------------------ consensus_13997#0 TCCATGTCACCAGAGAAGGCACTGCCTGCTGAACCAGAGGAGCAAGAAGAGAATCAAGTA 900 consensus_13997#1 ------------------------------------------------------------ consensus_13997#0 ACCAAAGAACAAGATGAAGAAGACAGGCATGATGCAGAACTTGGTGATGCACATGAAGAA 960 consensus_13997#1 ------------------------------------------------------------ consensus_13997#0 GATCACAAAGAAGCTGAACAAGATTATTTGCCTGTCTCTAGTTTCCTGATGAACCTAATA 1020 consensus_13997#1 ------------------------------------------------------------ consensus_13997#0 TTGGGAAAAGACAATGATGATCCAAAGAAAGATTCAGAAACCGAGGTTGAAAAGGAGCAA 1080 consensus_13997#1 ------------------------------------------------------------ consensus_13997#0 GAAGAAACAACGAAGGATGGAAGTTGTTTGATCGCTTCTCAACAAGAAGAAAATTTGGTG 1140 consensus_13997#1 ------------------------------------------------------------ consensus_13997#0 GCATTTCCTATAGAAAAATCGGTGGATGAAAAACTCACCTTTGAACAAGAAAAAGAAAAG 1200 consensus_13997#1 ------------------------------------------------------------ consensus_13997#0 GTAGAAGGCTCTGAAGAAACAAAAGAACCAGTAAAAGAACAGAGTTATGATGTCGAGATG 1260 consensus_13997#1 ------------------------------------------------------------ consensus_13997#0 GACGTCCAAAAATCATTGGAAACTGATGAAGAGCTCAAAAGGAACACTTGTGATTTGGAA 1320 consensus_13997#1 ------------------------------------------------------------ consensus_13997#0 GCACCAGTATACCAAGATAATGCCCAGGATGAAATTTCTAGCAAACTGATATCAGCCAAG 1380 consensus_13997#1 ------------------------------------------------------------ consensus_13997#0 GCAGCTGATCCGATCAAAAAAATGGAAGCTAGAGACTTTGAATTGGATGAAGAGTCATTT 1440 consensus_13997#1 ------------------------------------------------------------ consensus_13997#0 GATACAGTTTGTCAGGAAAACGTGGAAGCAGCAACAGAAATTGAAGACGGAAGCTTGAAT 1500 consensus_13997#1 ------------------------------------------------------------ consensus_13997#0 AGGGACCAAGATGACATAACAAGCCCAAAGGCTTCACAAGAGGATGCTTTGGAGGAAGTA 1560 consensus_13997#1 ------------------------------------------------------------ consensus_13997#0 GGAACAGAACTTCCGCATGAGTCTTTACATGAAAATAGACATGGTGCAAAGGATGAGCAA 1620 consensus_13997#1 ------------------------------------------------------------ consensus_13997#0 ACACTCTCCTTGATAGAACCCGATACAGGCAACGCTGAAAAATTGCCTAACGAGGCTGAC 1680 consensus_13997#1 ------------------------------------------------------------ consensus_13997#0 AGTGTTCAAAGCCCTCCTTGCACAGAACAAGAAGAGTCCATTGAATCTTCCTATGTTGAA 1740 consensus_13997#1 ------------------------------------------------------------ consensus_13997#0 GTGAGAAGTACTACTGAGGGTCAAGTGGAGAGTGAAGTAATAGAAACGAATGAGGAGGAC 1800 consensus_13997#1 ------------------------------------------------------------ consensus_13997#0 CAGCATACGACCGCAGGTGGACATACTGAAGAACAGATAGAAAATTTACATGATGATAAG 1860 consensus_13997#1 ------------------------------------------------------------ consensus_13997#0 TCGAAAGAAACATGTTCTGAAGAAATATCTGATGAGCAGGCACCTGAAATAACTGAACCA 1920 consensus_13997#1 ------------------------------------------------------------ consensus_13997#0 GTTAGCCACACTGATCGAAATTTTGCTTATGAAAAGGAAATTCCTGCAAGTTCGACATGC 1980 consensus_13997#1 ------------------------------------------------------------ consensus_13997#0 ATGGACAAGAAAGAGAGTATGATCTCAAACAATGAAGTCAGCAACTTTGAAAAAGCCCTT 2040 consensus_13997#1 ------------------------------------------------------------ consensus_13997#0 GAGACACACTCAGATAGTCCAAATTTGCATGTTAACCAAGATAAGAAAGATGAAACAGCT 2100 consensus_13997#1 ------------------------------------------------------------ consensus_13997#0 GATAACCAAACTGTGGTGGACCATAACACCGTGTTAGACAAGCTTGAAGATTCTAATCGG 2160 consensus_13997#1 ------------------------------------------------------------ consensus_13997#0 CAGGAGGAGCAGGAAACTGCTGCACAGAAGTTACCAAAAGAAACTGAAGGAAACCAGGAA 2220 consensus_13997#1 ------------------------------------------------------------ consensus_13997#0 TTTATGGCAATAACAGAGCCTGTGATCAAAGAAGAGAATGTACATGAAACAGTTGAAGGT 2280 consensus_13997#1 ------------------------------------------------------------ consensus_13997#0 AACACTCAAGCAGTGAAGATAAAATCTAATGAAGAGAAAGAACTTTTTGATTCACAGGTT 2340 consensus_13997#1 ------------------------------------------------------------ consensus_13997#0 CAGGAACGTGGTCTCAATGTGGTTTCACCCAAAGCAACTTCTGAGGCCGACGAAAAATTT 2400 consensus_13997#1 ------------------------------------------------------------ consensus_13997#0 GTGGAGATAACAAAGCCAGAATTCAGCACAGATGAAGAACATAGTCCAAAGGCGGATGAA 2460 consensus_13997#1 ------------------------------------------------------------ consensus_13997#0 TCAAATAAGCCAGACGAGAATACTTGTGATGAGAAAACAAAGGCTGAAGAGGAAACTAAT 2520 consensus_13997#1 ----------------------------------------------------------AT 2 ** consensus_13997#0 AATATCACTGATGAAGCAACAGTGAAAATAGAAGAACGAGGAGCAGAACAGAAGGTATCA 2580 consensus_13997#1 AATATCGCTGATGAAGCAACAGTGAAAATAGAAGAACGAGGAGCAGAACAGAAGGTATCA 62 ****** ***************************************************** consensus_13997#0 CATAAAAAACATAACATTTTGTCTGGTGTTGGATCAAAGGTGAAGCATCAACTAGCAAAA 2640 consensus_13997#1 CATAAAGAACATAACATTTTGTCTGGTGTTGGATCAAAGGTGAAGCATCAACTAGCAAAA 122 ****** ***************************************************** consensus_13997#0 GTGAAGAAAGCCATCATAGGTAAACCTGGGCACACAAAGTCTGAATCACCAAAATCATAA 2700 consensus_13997#1 GTGAAGAAAGCCATCATAGGTAAACCTGGGCACACAAAGTCTGAATCACCAAAATCATAA 182 ************************************************************ consensus_13997#0 AATTGATTCACCTTAGAGCATGTAATTCTTGTACAATATGTATTTTTGTAAGGAATTTAT 2760 consensus_13997#1 AATTGATTCACCTTAGAGCATGTAATTCTTGTACAATATGTATTTTTGTAAGGAATTTAT 242 ************************************************************ consensus_13997#0 GTGAGGTGTAGGATATTGCAATGGGTTTAGTGAACCATCTGTAATTTTGTATGAACGATT 2820 consensus_13997#1 GTGAGGTGTAGGATATTGCAATGGGTTTAGTGAACCATCTGTAATTTTGTATGAACGATT 302 ************************************************************ consensus_13997#0 CATTCAAAGGTTGTGTTCTTAAGGACGCTTGTAAATATAGGCAGGCAGTGTGTAGTTCAA 2880 consensus_13997#1 CATTCAAAGGTTGTGTTCTTAAGGACGCTTGTAAATATAGGCAGGCAGTGTGTAGTTCAA 362 ************************************************************ consensus_13997#0 GTTTCCATAAACTTTGTAATTGTTTCACCAACTTGGTGTGAGGTGAACAACATGTACATG 2940 consensus_13997#1 GTTTCCATGAACTTTGTTATTGTTTCCCCGGCCTGCTATAAAGGTTTTTTAGTATT---- 418 ******** ******** ******** ** * ** * * * * * * consensus_13997#0 GCATATTGTTTTTGTTACTTCCTCATTGATATGCATGTGTTGTTTTGTGGTAAAAAAGCA 3000 consensus_13997#1 ------------------------------------------------------------ consensus_13997#0 ACAAAAA 3007 consensus_13997#1 ------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||