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Oryza sativa
cluster # 14023 cluster # 14023       Sequences # 14       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_14023#0 length = 1329 sequences # 7  
consensus_14023#1 length = 741 sequences # 6  
consensus_14023#2 length = 256 sequences # 1  

consensusID : consensus_14023#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 1329
fasta sequence
                              [CCTTTCTCTCTCTGACTTCTCTCCCCACATTCGCCAGCCGCCGCTTCCCTTCCGCGAGGAGCGCGACACCTTCGGCCCCATCCGAGTCCCCAACGACAAGCTGTGGGGCGCGCAGACGCAGAGGTCGCTGCAGAACTTCGACATCGGCGGCGAGCGCGAGGGNATGCCGGTGCCCATCATCCGCGCCTTTGGGGTGCTCAAAAAGTGCGCCGCTAAGGTGAATATGGAGTATGGCCTTGATCCAACAATCGGGAAGGCAATAATGCAGGCTGCTCAGGAGGTTGCTGAAGGACAGTTAGATGACCACTTTCCACTTGTTATCTGGCAAACTGGGAGTGGCACACAAAGCAACATGAACGCCAATGAGGTTATT-GCAAATA-GGGCCGCTGAGATTCTTGGACATAAGCGT-GGCGAGAAGTTTGTACACCCTAATGATCATGTGAACAGATCACAGTCCTCAAATGATACATTTCCCACTGTCATGCACATAGCAGCAGCCACAGAGATCAATTCAAGGTTTGTCCCAAGCTTGCAACAGTTGCATAAGTCACTTGATTCAAAGTCTGTTGAATTTCAAGACATAATTAAAATTGGGCGTACACATACCCAAGATGCCACCCCATTGACCCTTGGCCAAGAGTTCAGCGGTTACGCCACACAAGTGAAATATGGAATTGATAGAATTGTTTGTACCTTACCACGGATGTATCAGCTTGCTCAAGGTGGAACTGCAGTTGGAACGGGCTTGAACACTAAGAAAGGATTTGATGTCAAAATTGCTGCTGCAGTAGCTGAGGAAACGGAACTACCTTTCGTGACAGCTGAGAACAAGTTCGAAGCTTTGGCAGCGCATGATGCTTTTGTTGAGAGCAGTGGTGCTGTAAACACAATTTCTGCATCTCTTATGAAGATAGCAAATGACATACGCTTGTTAGGAAGCGGCCCCCGATGTGGACTTGGTGAACTTATCCTACCTGAAAATGAGCCTGGGAGCAGCATTATGCCTGGAAAAGTAACCCTACCCAGTGTGAGGCCTTGACCATGGTTTGTGCTCAGGTTATGGGTAATCATGTTGGTGTCACAGTAGGTGGTTCGAATGACATTTTGAGTTGAATGCTTTAAGCCATGATTGCAGCTGATTCTTAGATACTGAGATTGCTGGGGTGCCTCTGTGTCTTGAGAAAACTGTGCAGGGGATTCAGCAACCTTAAGATTCACATATTGCACAGCTTTGTGTGGAACTCTTACCTAAATTGTTTGCATCTCACTGTGTTAAACCCCAAGAGAGCATGAGGAGCGCTGACTGGATTTACAAAAAATCTGCTGTGT]

[+] EMBL AU166239             [CCTTTCTCTCTCTGACTTCTCTCCCCACATTCGCCAGCCGCCGCTTCCCTTCCGCGAGGAGCGCGACACCTTCGGCCCCATCCGAGTCCCCAACGACAAGCTGTGGGGCGCGCAGACGCAGAGGTCGCTGCAGAACTTCGACATCGGCGGCGAGCGCGAGGGNATGCCGGTGCCCATCATCCGCGCCTTTGGGGTGCTCAAAAAGTGCGCCGCTAAGGTGAATATGGAGTATGGCCTTGATCCAACAATCGGGAAGGCAATAATGCAGGCTGCTCAGGAGGTTGCTGAAGGACAGTTAGATGACCACTTTCCACTTGTTATCTGGCAAACTGGGAGTGGCACACAAAGCAACATGAACGCCAATGAGGTTATTGGCAAATAGGGGCCGCTGAGATTCTTGGACATAAGCGTGGGCGAGAAGTTTGTACACCCTAATGATCATGTGAACAGATCACAGTCCTCAAATGATACATTTCCCACTGTCATGCACATAGCAGCAGCCACAGAGATCAATTCAAGGTTTGTCCCAAGCTTGCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CF323743             [                                                                                                                                                                       CGGTGCCCATCATCCGCGCCTTTGGGGTGCTCAAAAAGTGCGCCGCTAAGGTGAATATGGAGTATGGCCTTGATCCAACAATCGGGAAGGCAATAATGCAGGCTGCTCAGGAGGTTGCTGAAGGACAGTTAGATGACCACTTTCCACTTGTTATCTGGCAAACTGGGAGTGGCACACAAAGCAACATGAACGCCAATGAGGTTATT GCAAATA GGGCCGCTGAGATTCTTGGACATAAGCGT GGCGAGAAGTTTGTACACCCTAATGATCATGTGAACAGATCACAGTCCTCAAATGATACATTTCCCACTGTCATGCACATAGCAGCAGCCACAGAGATCAATTCAAGGTTTGTCCCAAGCTTGCAACAGTTGCATAAGTCACTTGATTCAAAGTCTGTTGAATTTCAAGACATAATTAAAATTGGGCGTACACATACCCAAGATGCCACCCCATTGACCCTTGGCCAAGAGTNCAGCGGTTACGCCACACAAGTGAAATATGGAATTGATAGAATTGTTTGTACCTTACCACGGATGTATCAGCTTGCTCAAGGTGGAACTGCAGTTGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CF303149             [                                                                                                                                                                         ggGCCCATCATCCGCGCCTTTGGGGTGCTCAAAAAGTGCGCCGCTAAGGTGAATATGGAGTATGGCCTTGATCCAACAATCGGGAAGGCAATAATGCAGGCTGCTCAGGAGGTTGCTGAAGGACAGTTAGATGACCACTTTCCACTTGTTATCTGGCAAACTGGGAGTGGCACACAAAGCAACATGAACGCCAATGAGGTTATT GCAAATA GGGCCGCTGAGATTCTTGGACATAAGCGT GGCGAGAAGTTTGTACACCCTAATGATCATGTGAACAGATCACAGTCCTCAAATGATACATTTCCCACTGTCATGCACATAGCAGCAGCCACAGAGATCAATTCAAGGTTTGTCCCAAGCTTGCAACAGTTGCATAAGTCACTTGATTCAAAGTCTGTTGAATTTCAAGACATAATTAAAATTGGGCGTACACATACCCAAGATGCCACCCCATTGACCCTTGGCCAAGAGTTCAGCGGTTACGCCACACAAGTGAAATATGGAATTGATAGAATTGTTTGTACCTTACCACGGATGTATCAGCTTGCTCAAGGTGGAACTGCAGTTGGAACGGGCTTGAACACTAAGAAAGGATTTGATGTCAAAATTGCTGCTGCAGTAGCTGAGGAAACGGAACTACCTTTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL OSS0996A             [                                                                                                                                                                                                                GCCGCTAAGGTGAATATGGAGTATGGCCTTGATCCAACAATCGGGAAGGCAATAATGCAGGCTGCTCAGGAGGTTGCTGAAGGACAGTTAGATGACCACTTTCCACTTGTTATCTGGCAAACTGGGAGTGGCACACAAAGCAACATGAACGCCAATGAGGTTATT GCAAATA GGGCCGCTGAGATTCTTGGNCATAAGCGT GGCGAGAAGTTTGTACACCCTAATGATCATGTGAACAGATCACAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CF304800             [                                                                                                                                                                                                                                                                                               AAGGACAGTTAGATGACCACTTTCCACTTGTTATCTGGCAAACTGGGAGTGGCACACAAAGCAACATGAACGCCAATGAGGTTATT GCAAATA GGGCCGCTGAGATTCTTGGACATAAGCGT GGCGAGAAGTTTGTACACCCTAATGATCATGTGAACAGATCACAGTCCTCAAATGATACATTTCCCACTGTCATGCACATAGCAGCAGCCACAGAGATCAATTCAAGGTTTGTCCCAAGCTTGCAACAGTTGCATAAGTCACTTGATTCAAAGTCTGTTGAATTTCAAGACATAATTAAAATTGGGCGTACACATACCCAAGATGCCACCCCATTGACCCTTGGCCAAGAGTTCAGCGGTTACGCCACACAAGTGAAATATGGAATTGATAGAATTGTTTGTACCTTACCACGGATGTATCAGCTTGCTCAAGGTGGAACTGCAGTTGGAACGGGCTTGAACAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CF304881             [                                                                                                                                                                                                                                                                                               AAGGACAGTTAGATGACCACTTTCCACTTGTTATCTGGCAAACTGGGAGTGGCACACAAAGCAACATGAACGCCAATGAGGTTATT GCAAATA GGGCCGCTGAGATTCTTGGACATAAGCGT GGCGAGAAGTTTGTACACCCTAATGATCATGTGAACAGATCACAGTCCTCAAATGATACATTTCCCACTGTCATGCACATAGCAGCAGCCACAGAGATCAATTCAAGGTTTGTCCCAAGCTTGCAACAGTTGCATAAGTCACTTGATTCAAAGTCTGTTGAATTTCAAGACATAATTAAAATTGGGCGTACACATACCCAAGATGCCACCCCATTGACCCTTGGCCAAGAGTTCAACGGTTACGCCACACAAGTGAAATA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL BE039617             [                                                                                                                                                                                                                                                                                                                                                 GGCACACAAAGCAACATGAACGCCAATGAGGTTATT GCAAATA GGGCCGCTGAGATTCTTGGACATAAGCGT GGCGAGAAGTTTGTACACCCTAATGATCATGTGAACAGATCACAGTCCTCAAATGATACATTTCCCACTGTCATGTTCATAGCAGCAGCCACAGAGATCAATTCAAGGTTTGTCCCAAGCTTGCAACAGTTGCATAAGTCACTTGATTCAAAGTCTGTTGAATTTCAAGACATAATTAAAATTGGGCGTACACATACCCAAGATGCCACCCCATTGACCCTTGGCCAAGAGTTCAGCGGTTACGCCACACAAGTGAAATATGGAATTGATAGAATTGTTTGTACCTTACCACGGATGTATCAGCTTGCTCAAGGTGGAACTGCAGTTGGAACGGGCTTGAACACTAAGAAAGGATTTGATGTCAAAATTGCTGCTGCAGTAGCTGAGGAAATGGAACTACCTTTCGTGACAGCTGAGAACAAGTTCGAAGCTTTGGCAGCGCATGATGCTTTTGTTGAGAGCAGTGGTGCTGTAAACACAATTTCTGCATCTCTTATGAAGATAGCAAATGACATACGCTTGTTAGGAAGCGGCCCCCGATGTGGACTTGGTGAACTTATCCTACCTGAAAATGAGCCTGGGAGCAGCATTATGCCTGGAAAAGTAACCCTACCCAGTGTGAGGCCTTGACCATGGTTTGTGCTCAGGTTATGGGTAATCATGTTGGTGTCACAGTAGGTGGTTCGAATGACATTTTGAGTTGAATGCTTTAAGCCATGATTGCAGCTGATTCTTAGATACTGAGATTGCTGGGGTGCCTCTGTGTCTTGAGAAAACTGTGCAGGGGATTCAGCAACCTTAAGATTCACATATTGCACAGCTTTGTGTGGAACTCTTACCTAAATTGTTTGCATCTCACTGTGTTAAACCCCAAGAGAGCATGAGGAGCGCTGACTGGATTTACAAAAAATCTGCTGTGT]


>consensus_14023#0 CCTTTCTCTCTCTGACTTCTCTCCCCACATTCGCCAGCCGCCGCTTCCCTTCCGCGAGGA GCGCGACACCTTCGGCCCCATCCGAGTCCCCAACGACAAGCTGTGGGGCGCGCAGACGCA GAGGTCGCTGCAGAACTTCGACATCGGCGGCGAGCGCGAGGGNATGCCGGTGCCCATCAT CCGCGCCTTTGGGGTGCTCAAAAAGTGCGCCGCTAAGGTGAATATGGAGTATGGCCTTGA TCCAACAATCGGGAAGGCAATAATGCAGGCTGCTCAGGAGGTTGCTGAAGGACAGTTAGA TGACCACTTTCCACTTGTTATCTGGCAAACTGGGAGTGGCACACAAAGCAACATGAACGC CAATGAGGTTATTGCAAATAGGGCCGCTGAGATTCTTGGACATAAGCGTGGCGAGAAGTT TGTACACCCTAATGATCATGTGAACAGATCACAGTCCTCAAATGATACATTTCCCACTGT CATGCACATAGCAGCAGCCACAGAGATCAATTCAAGGTTTGTCCCAAGCTTGCAACAGTT GCATAAGTCACTTGATTCAAAGTCTGTTGAATTTCAAGACATAATTAAAATTGGGCGTAC ACATACCCAAGATGCCACCCCATTGACCCTTGGCCAAGAGTTCAGCGGTTACGCCACACA AGTGAAATATGGAATTGATAGAATTGTTTGTACCTTACCACGGATGTATCAGCTTGCTCA AGGTGGAACTGCAGTTGGAACGGGCTTGAACACTAAGAAAGGATTTGATGTCAAAATTGC TGCTGCAGTAGCTGAGGAAACGGAACTACCTTTCGTGACAGCTGAGAACAAGTTCGAAGC TTTGGCAGCGCATGATGCTTTTGTTGAGAGCAGTGGTGCTGTAAACACAATTTCTGCATC TCTTATGAAGATAGCAAATGACATACGCTTGTTAGGAAGCGGCCCCCGATGTGGACTTGG TGAACTTATCCTACCTGAAAATGAGCCTGGGAGCAGCATTATGCCTGGAAAAGTAACCCT ACCCAGTGTGAGGCCTTGACCATGGTTTGTGCTCAGGTTATGGGTAATCATGTTGGTGTC ACAGTAGGTGGTTCGAATGACATTTTGAGTTGAATGCTTTAAGCCATGATTGCAGCTGAT TCTTAGATACTGAGATTGCTGGGGTGCCTCTGTGTCTTGAGAAAACTGTGCAGGGGATTC AGCAACCTTAAGATTCACATATTGCACAGCTTTGTGTGGAACTCTTACCTAAATTGTTTG CATCTCACTGTGTTAAACCCCAAGAGAGCATGAGGAGCGCTGACTGGATTTACAAAAAAT CTGCTGTGT



consensusID : consensus_14023#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 741
fasta sequence
                              [AAGGGGGGGTAATCNTGTTGGTGTCACAGTAGGTGGTTCGAATGGACATTTTGAGTTGAATGTCTTTAAGCCAATGATTGCAGCTGGATTACTTAGATCACTGAGATTGCTAGGGGATGCCTCTGTGTCCTTTGAGAAAAACTGTGTCAGGGGAATTCAAGCAAACCATAAGAGAATTTCACAATTATTGCACGAGTCTTTGATGTTGGTGACATCTTTGAACCCTAAAATTGGCTATGACAATGCTGCAGCTGTTGCTAAGAAAGCACACAAAGAAGGAAGCACATTGAAGGAAGCTGCTCTAGACCTCGGAGTATTGACAGAATCAGAATTCCATGAGCTTGTTGTTCCAGAGAAAATGATTGGTCCTTCTGATTGATAGCGACTAATGTATTCCTGTCCTGTGGATTTCCTAGCTCTAGCTCACCCGTAAATAAAGCAAGCCAGACATTTACATCTTCAGTTCCTTATCGTATTGAAGAGTTTGTTTTTGCACTGCAAAT-GGT-GCCGGAGAAAACAAGATTCCATTCCTGTTACTGAAATAGTAAACAGTATATTTTGATTCATTGAAGTAGATGCTTTTTATTTCTAGGGCATGCCATCCTTTTCCCAATGGCGAATCTGCATGTAATAAGTTAATGTAGCAACCATGCCCGT-GGAAATATTATCACATTTGACTTGAGAACAAATGAATG-AAATATATTTGGATTAAATTTATTTTTTAAGAAAATAGATTAAAAA]

[+] EMBL CA767533             [AAGGGGGGGTAATCNTGTTGGTGTCACAGTAGGTGGTTCGAATGGACATTTTGAGTTGAATGTCTTTAAGCCAATGATTGCAGCTGGATTACTTAGATCACTGAGATTGCTAGGGGATGCCTCTGTGTCCTTTGAGAAAAACTGTGTCAGGGGAATTCAAGCAAACCATAAGAGAATTTCACAATTATTGCACGAGTCTTTGATGTTGGTGACATCTTTGAACCCTAAAATTGGCTATGACAATGCTGCAGCTGTTGCTAAGAAAGCACACAAAGAAGGAAGCACATTGAAGGAAGCTGCTCTAGACCTCGGAGTATTGACAGAATCAGAATTCCATGAGCTTGTTGTTCCAGAGAAAATGATTGGTCCTTCTGATTGATAGCGACTAATGTATTCCTGTCCTGTGGATTTCCTAGCTCTAGCTCATCCGTAAATAAAGCAAGCCAGACATTTACATCTTCAGTTCCTTATCGTATTGGAGAGTTTGTTTTTGCACTGCAAAT GGT GCCGGAGAAAACAAGATTCCATTCCTGTTACTGAAATAGTAAACAGTATATTTTGATTCATTGAAGTAGATGCTTTTTATTTCTAGGGCATGCCATCCTTTTNCCAATGGCGAATCTGCATGTAATAAGTTAATGTAGCAACCATGCCCGTGGGAAATATTATCACATTTGACTTGAGAACAAATGAATGAAAATATATTTGGA                                 ]
[-] EMBL CF322587             [                                                                           GATTGCAGCTGGATTACTTAGATCACTGAGATTGCTAGGGGATGCCTCTGTGTCCTNTGAGAAAAACTGTGTCAGGGGAATTCAAGCAAACCATAAGAGAATTTCACAATTATTGCACGAGTCTTTGATGTTGGTGACATCTTTGAACCCTAAAATTGGCTATGACAATGCTGCAGCTGTTGCTAAGAAAGCACACAAAGAAGGAAGCACATTGAAGGAAGCTGCTCTAGACCTCGGAGTATTGACAGAATCAGAATTCCATGAGCTTGTTGTTCCAGAGAAAATGATTGGTCCTTCTGATTGATAGCGACTAATGTATTCCTGTCCTGTGGATTTCCTAGCTCTAGCTCACCCGTAAATAAAGCAAGCCAGACATTTACATCTTCAGTTCCTTATCGTATTGAAGAGTTTGTTTTTGCACTGCAAAT GGT GCCGGAGAAAACAAGATTCCATTCCTGTTACTGAAATAGTAAACAGTATATTTTGATTCATTGAAGTAGATGCTTTTTATTTCTAGGGCATGCCATCCTTTTCCCAATGGCGAATCTGCATGTAATAAGTTAATGTAGCAACCATGCCCGT GGAAATATTATCACATTTGACTTGAGAACAAATGAATG AAATATATTTGGATTAAA                            ]
[+] EMBL C98549               [                                                                                                                                                                                          ATTNCACGAGTCTTTGATGTTGGTGACATCTTTGANCCCTAAAATTGGCTATGACAATNCTGCAGCTGTTGCTAAGAAANCACACAAAGAAGGAANCACATTGAAGGAAGCTGCTCTAGACCTCGGAGTATTGACAGAATCAGAATTCCATGAGCTTGTTGTTCCAGAGAAAATGATTGGTCCTTCTGATTGATAGCGACTAATGTATTCCTGTCCTGTGGATTTCCTAGCTCTAGCTCACCCGTAAATAAAGCAAGCCAGACATTTACATCTTCAGTTCCTTATCGTATTGAAGAGTTTGTTTTTGCACTGCAAAT GGT GCCGGAGAAAACAAGATTCCATTCCTGTTACTGAAATAGTAAACAGTATATTTTGATTCATTGAAGTAGATGCTTTTTATTTCTAGGGCATGCCATCCTTTTCCCAATGGCGAATCTGCATGTAATAAGTTAATGTAGCAACCATGCCCGT GGAAATATTATCACATTTGACTTGAGAACAAATGAATG AAATATATTTGGATTAAAaa                          ]
[+] EMBL AU222838             [                                                                                                                                                                                                                                                                                                                  CCTCGGAGTATTGACAGAATCAGAATTCCATGAGCTTGTTGTTCCAGAGAAAATGATTGGTCCTTCTGATTGATAGCGACTAATGTATTCCTGTCCTGTGGATTTCCTAGCTCTAGCTCACCCGTAAATAAAGCAAGCCAGACATTTACATCTTCAGTTCCTTATCGTATTGAAGAGTTTGTTTTTGCACTGCAAAT GGT GCCGGAGAAAACAAGATTCCATTCCTGTTACTGAAATAGTAAACAGTATATTTTGATTCATTGAAGTAGATGCTTTTTATTTCTAGGGCATGCCATCCTTTTCCCAATGGCGAATCTGCATGTAATAAGTTAATGTAGCAACCATGCCCGT GGAAATATTATCACATTTGACTTGAGAACAAATGAATG AAATATATTTGGATTATGTTTATTTTTTAAGAAAATAGATTAAAAA]
[+] EMBL AA751269             [                                                                                                                                                                                                                                                                                                                                                            TCCAGAGAAAATGATTGGTCCTTCTGATTGATAGCGACTAATGTATTCCTGTCCTGTGGATTTCCTAGCTCTAGCTCACCCGTAAATAAAGCAAGCCAGACATTTACATCTTCAGTTCCTTATCGTATTGAAGAGTTTSTTTTTCSACTGCAAATCGGTCSCGGGAGAAAACAAGATTCCATTCCTGTTACTGAAATAGTAAA                                                                                                                                                                                                  ]
[+] EMBL AU161584             [                                                                                                                                                                                                                                                                                                                                                                                                               cCCTGTGGATTTCCTAGCTCTAGCTCACCCGTAAATAAAGCAAGCCAGACATTTACATCTTCAGTTCCTTATCGTATTGAAGAGTTTGTTTTTGCACTGCAAAT GGT GCCGGAGAAAACAAGATTCCATTCCTGTTACTGAAATAGTAAACAGTATATTTTGATTCATTGAAGTAGATGCTTTTTATTTCTAGGGCATGCCATCCTTTTCCCAATGGCGAATCTGCATGTAATAAGTTAATGTAGCAACCATGCCCGT GGAAATATTATCACATTTGACTTGAGAACAAATGAATG AAATATATTTGGATTATGTTTATTTTTTAAGAAAATAGATTAAAAA]


>consensus_14023#1 AAGGGGGGGTAATCNTGTTGGTGTCACAGTAGGTGGTTCGAATGGACATTTTGAGTTGAA TGTCTTTAAGCCAATGATTGCAGCTGGATTACTTAGATCACTGAGATTGCTAGGGGATGC CTCTGTGTCCTTTGAGAAAAACTGTGTCAGGGGAATTCAAGCAAACCATAAGAGAATTTC ACAATTATTGCACGAGTCTTTGATGTTGGTGACATCTTTGAACCCTAAAATTGGCTATGA CAATGCTGCAGCTGTTGCTAAGAAAGCACACAAAGAAGGAAGCACATTGAAGGAAGCTGC TCTAGACCTCGGAGTATTGACAGAATCAGAATTCCATGAGCTTGTTGTTCCAGAGAAAAT GATTGGTCCTTCTGATTGATAGCGACTAATGTATTCCTGTCCTGTGGATTTCCTAGCTCT AGCTCACCCGTAAATAAAGCAAGCCAGACATTTACATCTTCAGTTCCTTATCGTATTGAA GAGTTTGTTTTTGCACTGCAAATGGTGCCGGAGAAAACAAGATTCCATTCCTGTTACTGA AATAGTAAACAGTATATTTTGATTCATTGAAGTAGATGCTTTTTATTTCTAGGGCATGCC ATCCTTTTCCCAATGGCGAATCTGCATGTAATAAGTTAATGTAGCAACCATGCCCGTGGA AATATTATCACATTTGACTTGAGAACAAATGAATGAAATATATTTGGATTAAATTTATTT TTTAAGAAAATAGATTAAAAA



consensusID : consensus_14023#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 256
fasta sequence
                              [GCCGCTAAGGTGAATATGGAGTATGGNCTTGATCCCACAAANGGGGAGGNAATAATNCANGNTTNTNANGNGGNTTCTTNAGGGCCANTNGGTNGCCCNNTTNCCNTTTGTAATCTGGAAANNTGGGGGTGGCACACAAAGCAACATGAACGCCAATGAGGTTATTGCAAATAGGGCCGCTGAGATTCTTGGACATAAGCGTGGCGAGAAGTTTGTACACCCTAATGATCATGTGAACAGATCACAGTCCTCAAAT]

[+] EMBL OSS0948A             [GCCGCTAAGGTGAATATGGAGTATGGNCTTGATCCCACAAANGGGGAGGNAATAATNCANGNTTNTNANGNGGNTTCTTNAGGGCCANTNGGTNGCCCNNTTNCCNTTTGTAATCTGGAAANNTGGGGGTGGCACACAAAGCAACATGAACGCCAATGAGGTTATTGCAAATAGGGCCGCTGAGATTCTTGGACATAAGCGTGGCGAGAAGTTTGTACACCCTAATGATCATGTGAACAGATCACAGTCCTCAAAT]


>consensus_14023#2 GCCGCTAAGGTGAATATGGAGTATGGNCTTGATCCCACAAANGGGGAGGNAATAATNCAN GNTTNTNANGNGGNTTCTTNAGGGCCANTNGGTNGCCCNNTTNCCNTTTGTAATCTGGAA ANNTGGGGGTGGCACACAAAGCAACATGAACGCCAATGAGGTTATTGCAAATAGGGCCGC TGAGATTCTTGGACATAAGCGTGGCGAGAAGTTTGTACACCCTAATGATCATGTGAACAG ATCACAGTCCTCAAAT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_14023#0      CCTTTCTCTCTCTGACTTCTCTCCCCACATTCGCCAGCCGCCGCTTCCCTTCCGCGAGGA 60
consensus_14023#2      ------------------------------------------------------------
consensus_14023#1      ------------------------------------------------------------
                                                                                   

consensus_14023#0      GCGCGACACCTTCGGCCCCATCCGAGTCCCCAACGACAAGCTGTGGGGCGCGCAGACGCA 120
consensus_14023#2      ------------------------------------------------------------
consensus_14023#1      ---------------------------AAGGGGGGGTAATCNTGTTGGTGTCACAGTAGG 33
                                                                                   

consensus_14023#0      GAGGTCGCTGCAGAACTTCGACATCGGCGGCGAGCGCGAGGGNATGCCGGTGCCCATCAT 180
consensus_14023#2      ------------------------------------------------------------
consensus_14023#1      TGGTTCGAATGGACATTTTGAGTTGAATGTCTTTAAGCCAATGATTGCAGCTGGATTACT 93
                                                                                   

consensus_14023#0      CCGCGCCTTTGGGGTGCTCAAAAAGTGCGCCGCTAAGGTGAATATGGAGTATGGCCTTGA 240
consensus_14023#2      ----------------------------GCCGCTAAGGTGAATATGGAGTATGGNCTTGA 32
consensus_14023#1      TAGATCACTGAGATTGCTAGGGGATGCCTCTGTGTCCTTTGAGAAAAACTGTGTCAGGGG 153
                                                    * *      *  * *   * * **     * 

consensus_14023#0      ---TCCAACAATCGGGAAGGCAATAATGCAGGCTGCTCAGGAGGTTGCTGAAGGACAGTT 297
consensus_14023#2      ---TCCCACAAANGGGGAGGNAATAATNCANGNTTNTNANGNGGNTTCTTNAGGGCCANT 89
consensus_14023#1      AATTCAAGCAAACCATAAGAGAAT--TTCACAATTATTGCACGAGTCTTTGATGTTGGTG 211
                          **   ***      **  ***  * **   *  *     *  *  *  * *      

consensus_14023#0      AGATGACC-ACTTTCCACTTGTTATCTGGCAAACTGGGAGTGGCACACAAAGCAACATGA 356
consensus_14023#2      NGGTNGCCCNNTTNCCNTTTGTAATCTGGAAANNTGGGGGTGGCACACAAAGCAACATGA 149
consensus_14023#1      ACATCTTTGAACCCTAAAATTGGCTATGACAATGCTGCAGCTGTTGCTAAGAAAGCACAC 271
                          *               *    * **  **    *  *  *     **   * **   

consensus_14023#0      ACGCCAATGAGGTTATTGCAAATAGGGCCGCTGAGATTCTTGGACATAAGCGTGGCGAGA 416
consensus_14023#2      ACGCCAATGAGGTTATTGCAAATAGGGCCGCTGAGATTCTTGGACATAAGCGTGGCGAGA 209
consensus_14023#1      AAAGAAGGAAGCACATTGAAGGAAGCTGCTCT-AGACCTCGGAGTATTGACAGAATCAGA 330
                       *    *   **   **** *   **   * ** ***     *   **   *      ***

consensus_14023#0      AGTTTGTACACCCTAATGATCATGTGAACAGATCACAGTCCTCAAATGATACATTTCCCA 476
consensus_14023#2      AGTTTGTACACCCTAATGATCATGTGAACAGATCACAGTCCTCAAAT------------- 256
consensus_14023#1      ATTCCATG-AGCTTGTTGTTCCAGAGAAAATGATTGGTCCTTCTGATTG-ATAGCGACTA 388
                       * *   *  * * *  ** **  * *** *         * **  **             

consensus_14023#0      CTGTCATGCACATAGCAGCAGCCACAGAGATCAATTCAAGGTTTGTCCCAAGCTTGCAAC 536
consensus_14023#2      ------------------------------------------------------------
consensus_14023#1      ATGT-ATTCCTGTCCTGTGGATTTCCTAGCTCTAGCTCACCCGTAAATAAAGCAAGCCAG 447
                                                                                   

consensus_14023#0      AGTTGCATAAGTCACTTGATTCAAAGTCTGTTGAATTTCAAGACATAATTAAAATTGGGC 596
consensus_14023#2      ------------------------------------------------------------
consensus_14023#1      ACATTTACATCTTCAGTTCCTTATCGTATTGAAGAGTTTGTTTTTGCACTGCAAATGGTG 507
                                                                                   

consensus_14023#0      GTACACATACCCAAGATGCCACCCCATTGACCCTTGGCCAAGAGTTCAGCGGTTACGCCA 656
consensus_14023#2      ------------------------------------------------------------
consensus_14023#1      CCGGAGAAAACAAGATTCCATTCCTGTTACTGAAATAGTAAACAGTATATTTTGATTCAT 567
                                                                                   

consensus_14023#0      CACAAGTGAAATATGGAATTGATAGAAT-TGTTTGTACCTTACCACGGATGTATCAGCTT 715
consensus_14023#2      ------------------------------------------------------------
consensus_14023#1      TGAAGTAGATGCTTTTTATTTCTAGGGCATGCCATCCTTTTCCCAATGGCGAATCTGCAT 627
                                                                                   

consensus_14023#0      GCTCAAGGTGGAACTGCAGTTGGAACGGGCTTGAACACTAAGAAAGGATTTGATGTCAAA 775
consensus_14023#2      ------------------------------------------------------------
consensus_14023#1      GTAATAAGTTAA--TGTAGCAACCATGCCCGTGGAAA-TATTATCACATTTGACTTGAGA 684
                                                                                   

consensus_14023#0      ATTGCTGCTGCAGTAGCTGAGGAAACGGAACTACCTTTCGTGACAGCTGAGAACAAGTTC 835
consensus_14023#2      ------------------------------------------------------------
consensus_14023#1      ACAAATGAATGAAATATATTTGGATTAAATTTATTTTTTAAGAAAATAGATTAAAAA--- 741
                                                                                   

consensus_14023#0      GAAGCTTTGGCAGCGCATGATGCTTTTGTTGAGAGCAGTGGTGCTGTAAACACAATTTCT 895
consensus_14023#2      ------------------------------------------------------------
consensus_14023#1      ------------------------------------------------------------
                                                                                   

consensus_14023#0      GCATCTCTTATGAAGATAGCAAATGACATACGCTTGTTAGGAAGCGGCCCCCGATGTGGA 955
consensus_14023#2      ------------------------------------------------------------
consensus_14023#1      ------------------------------------------------------------
                                                                                   

consensus_14023#0      CTTGGTGAACTTATCCTACCTGAAAATGAGCCTGGGAGCAGCATTATGCCTGGAAAAGTA 1015
consensus_14023#2      ------------------------------------------------------------
consensus_14023#1      ------------------------------------------------------------
                                                                                   

consensus_14023#0      ACCCTACCCAGTGTGAGGCCTTGACCATGGTTTGTGCTCAGGTTATGGGTAATCATGTTG 1075
consensus_14023#2      ------------------------------------------------------------
consensus_14023#1      ------------------------------------------------------------
                                                                                   

consensus_14023#0      GTGTCACAGTAGGTGGTTCGAATGACATTTTGAGTTGAATGCTTTAAGCCATGATTGCAG 1135
consensus_14023#2      ------------------------------------------------------------
consensus_14023#1      ------------------------------------------------------------
                                                                                   

consensus_14023#0      CTGATTCTTAGATACTGAGATTGCTGGGGTGCCTCTGTGTCTTGAGAAAACTGTGCAGGG 1195
consensus_14023#2      ------------------------------------------------------------
consensus_14023#1      ------------------------------------------------------------
                                                                                   

consensus_14023#0      GATTCAGCAACCTTAAGATTCACATATTGCACAGCTTTGTGTGGAACTCTTACCTAAATT 1255
consensus_14023#2      ------------------------------------------------------------
consensus_14023#1      ------------------------------------------------------------
                                                                                   

consensus_14023#0      GTTTGCATCTCACTGTGTTAAACCCCAAGAGAGCATGAGGAGCGCTGACTGGATTTACAA 1315
consensus_14023#2      ------------------------------------------------------------
consensus_14023#1      ------------------------------------------------------------
                                                                                   

consensus_14023#0      AAAATCTGCTGTGT 1329
consensus_14023#2      --------------
consensus_14023#1      --------------
                                     




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)