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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14032#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 1523 fasta sequence
[ATACATCCCGCGCCTTCTTCCTCCTCAGCTTTGCCGAGACCTCGTTGCCTCAAGCCGTGTTGCGTGCTGCATGCTCTGAATTGAAGAACTCTCTTGAGCCTGACCAGGTATATCAGAAGTGGAGAAGAAGATTGGAAGCATGAGGGAAATGGGAGAGAAGAGGAGGCGTGGACACCTTAACCCTGCTGGTTTTGCAGGAGGGTTGCATGATCATGAGGAGAAGAAGAACGAGGAGCATAAGCTAGACATGAGTGGCATGTCCATGGATGCCCTCCCACACCTCACCATGTCTCTTGGTCAAGTCACCATCTTGGATCTCTCTAACAACAATCTTGAGAGCATCCCGGAGTCAATAATCGCTCGGCTGCTGAACGTG-GT-GGTGCT-GGACGTGCGGTCCAACCAGCTGAAATCGCTGCCCAACTCCATCGGCTGCCTCTCCAAGCTCAAGGTCCTCAACGTCTCCGGCAACCTGCTCGAGTCCCTCCCCAACACCATCGAGGAGTGCCGTGCGCTGGAGGAGCTGCACGCCAACTTCAACGAG-CTGACGAAGCTGCCGGACACGCTGGGGTTCGAGCTGCACAGCCTCCGGAAGCTGTCGGTGAACTCCAACAAGCTGGCGCAGCTCCCCTCCTCGACGTCGCACATGACGGCGCTCAGGGCGCTGGACGCCCGGCTCAACTGCCTCCGCGCGCTCCCCGACGGGCTCGAGAACCTCGCCAACCTCGAGGCGCTCA-ACGTCAGCCAGAACTTCCAGTTCCTCCGGGAGCTCCCCTACGCCGTCGGCCTCCTCGCCTCGCTCCGGGAGCTCGAC-GTCAGCTACAACTCCATCGCCGCGCTCCCGGACTCCATGGGCTGCCTCACCAAGCTCGCCAGGTTCAGCGCCGTCGGCAACCCGCTGGTGTCCCCGCCCATGGACGTCGTGGAGCAGGGCCTGGACGCCATGCGCGCCTACCTCACCGCGAGGATGAACGGCGGCGACGGCAAGAGGAAGAAGAAGGCGTGGCTGCCCAAGCTGGTCAAGTACAGCACCTTCACGGCGAGGATGACGCCCGGGCGCACCAGGGTGCACGAGAACACGGAGGGCCTCCTCATGTCGGACTACCGGTCGCTCAACGGCATCGCCTCGCCGAGGTT-CCTCACCATGCT-CTC-GCC-GCGCCGCCTCTTCTCGCCGCGGAGGAATTCGCCCA-AGCA-TTGTTGATATGGCCGATCCGATCCGCCTCTGCCTACTCTGTGTACTGGTTGCCTGTTTGCTTCAGGGGTGTACTTCAGATGATGTCATGCTCTCGTACTTAATTAGGATAGATATGATGATGCTGCTGCTGCTAGCTGCTACCGCTGCTGCAAGGTGTGTATATGTTCTCATGAAGAGGTTTGTAGCTTCGCATACAGTATATAGCTCTACAATTTTTGTTTGACGTAAAAAATG-CTGTAGTACAATCTAGAGCATT-GATGTACATAACAA-GGGTAATTTTCTTCCATGTCTGTTTGTTAAGCACCAAAAAAAAAAAGGNGGGGGTAAAAAA]
[+] EMBL CF337739 [ATACATCCCGCGCCTTCTTCCTCCTCAGCTTTGCCGAGACCTCGTTGCCTCAAGCCGTGTTGCATGCTGCATGCTCTGAATTGAAGAACTCTCTTGAGCCTGACCAGGTATATCAGAAGTGGAGAAGAAGATTGGAAGCATGAGGGAAATGGGAGAGAAGAGGAGGCGTGGACACCTTAACCCTGCTGGTTTTGCAGGAGGGTTGCATGATCATGAGGAGAAGAAGAACGAGGAGCATAAGCTAGACATGAGTGGCATGTCCATGGATGCCCTCCCACACCTCACCATGTCTCTTGGTCAAGTCACCATCTTGGATCTCTCTAACAACAATCTTGAGAGCATCCCGGAGTCAATAATCGCTCGGCTGCTGAACGTG GTGGGTGCT GGACGTGCGGTCCAACCAGCTGAAATCGCTGCCCAACTCCATCGGCTGCCTCTCCAAGCTCAAGGTCCTCAACGTCTCCGGCAACCTGCTCGAGTCCCTCCCCAACACCATCGAGGAGTGCCGTGCGCTGGAGGAGCTGCACGCCAACTTCAACGAG CTGACGAAGCTGCCGGACACGCTTGGGTTCG ]
[+] EMBL CF296844 [ATACATCCCGCGCCTTCTTCCTCCTCAGCTTTGCCGAGACCTCGTTGCCTCAAGCCGTGTTGCGTGCTGCATGCTCTGAATTGAAGAACTCTCTTGAGCCTGACCAGGTATATCAGAAGTGGAGAAGAAGATTGGAAGCATGAGGGAAATGGGAGAGAAGAGGAGGCGTGGACACCTTAACCCTGCTGGTTTTGCAGGAGGGTTGCATGATCATGAGGAGAAGAAGAACGAGGAGCATAAGCTAGACATGAGTGGCATGTCCATGGATGCCCTCCCACACCTCACCATGTCTCTTGGTCAAGTCACCATCTTGGATCTCTCTAACAACAATCTTGAGAGCATCCCGGAGTCAATAATCGCTCGGCTGCTGAACGTGNGT GGTGCTGGGACGTGCGGTCCAACCAGCTGAAATCGCTGCCCAACTCCATCGGCTGCCTCTCCAAGCTCAAGGTCCTCAACGTCTCCGGCAACCTGCTCGAGTCCCTC ]
[+] EMBL AK066546 [ CATCCCGCGCCTTCTTCCTCCTCAGCTTTGCCGAGACCTCGTTGCCTCAAGCCGTGTTGCGTGCTGCATGCTCTGAATTGAAGAACTCTCTTGGGCCTGACCAGGTATATCAGAAGTGGAGAAGAAGATTGGAAGCATGAGGGAAATGGGAGAGAAGAGGAGGCGTGGACACCTTAACCCTGCTGGTTTTGCAGGAGGGTTGCATGATCATGAGGAGAAGAAGAACGAGGAGCATAAGCTAGACATGAGTGGCATGTCCATGGATGCCCTCCCACACCTCACCATGTCTCTTGGTCAAGTCACCATCTTGGATCTCTCTAACAACAATCTTGAGAGCATCCCGGAGTCAATAATCGCTCGGCTGCTGAACGTG GT GGTGCT GGACGTGCGGTCCAACCAGCTGAAATCGCTGCCCAACTCCATCGGCTGCCTCTCCAAGCTCAAGGTCCTCAACGTCTCCGGCAACCTGCTCGAGTCCCTCCCCAACACCATCGAGGAGTGCCGTGCGCTGGAGGAGCTGCACGCCAACTTCAACGAG CTGACGAAGCTGCCGGACACGCTGGGGTTCGAGCTGCACAGCCTCCGGAAGCTGTCGGTGAACTCCAACAAGCTGGCGCAGCTCCCCTCCTCGACGTCGCACATGACGGCGCTCAGGGCGCTGGACGCCCGGCTCAACTGCCTCCGCGCGCTCCCCGACGGGCTCGAGAACCTCGCCAACCTCGAGGCGCTCA ACGTCAGCCAGAACTTCCAGTTCCTCCGGGAGCTCCCCTACGCCGTCGGCCTCCTCGCCTCGCTCCGGGAGCTCGAC GTCAGCTACAACTCCATCGCCGCGCTCCCGGACTCCATGGGCTGCCTCACCAAGCTCGCCAGGTTCAGCGCCGTCGGCAACCCGCTGGTGTCCCCGCCCATGGACGTCGTGGAGCAGGGCCTGGACGCCATGCGCGCCTACCTCACCGCGAGGATGAACGGCGGCGACGGCAAGAGGAAGAAGAAGGCGTGGCTGCCCAAGCTGGTCAAGTACAGCACCTTCACGGCGAGGATGACGCCCGGGCGCACCAGGGTGCACGAGAACACGGAGGGCCTCCTCATGTCGGACTACCGGTCGCTCAACGGCATCGCCTCGCCGAGGTT CCTCACCATGCT CTC GCC GCGCCGCCTCTTCTCGCCGCGGAGGAATTCGCCCA AGCA TTGTTGATATGGCCGATCCGATCCGCCTCTGCCTACTCTGTGTACTGGTTGCCTGTTTGCTTCAGGGGTGTACTTCAGATGATGTCATGCTCTCGTACTTAATTAGGATAGATATGATGATGCTGCTGCTGCTAGCTGCTACCGCTGCTGCAAGGTGTGTATATGTTCTCATGAAGAGGTTTGTAGCTTCGCATACAGTATATAGCTCTACAATTTTTGTTTGACGTAAAAAATG CTGTAGTACAATCTAGAGCATT GATGTACATAACAA GGGTAATTTTCTTCCATGTCTGTTT ]
[+] EMBL CB657244 [ CGTTGCCTCAAGCCGTGTTGCGTGCTGCATGCTCTGAATTGAAGAACTCTCTTGAGCCTGACCAGGTATATCAGAAGTGGAGAAGAAGATTGGAAGCATGAGGGAAATGGGAGAGAAGAGGAGGCGTGGACACCTTAACCCTGCTGGTTTTGCAGGAGGGTTGCATGATCATGAGGAGAAGAAGAACGAGGAGCATAAGCTAGACATGAGTGGCATGTCCATGGATGCCCTCCCACACCTCACCATGTCTCTTGGTCAAGTCACCATCTTGGATCTCTCTAACAACAATCTTGAGAGCATCCCGGAGTCAATAATCGCTCGGCTGCTGAACGTG GT GGTGCT GGACGTGCGGTCCAACCAGCTGAAATCGCTGCCCAACTCCATCGGCTGCCTCTCCAAGCTCAAGGTCCTCAACGTCTCCGGCAACCTGCTCGAGTCCCTCCCCAACACCATCGAGGAGTGCCGTGCGCTGGAGGAGCTGCACGCCAACTTCAACGAG CTGACGAAGCTGCCGGACACGCTGGGGTTCGAGCTGCACAGCCTCCGGAAGCTGTCGGTGAACTCCAACAAGCTGGCGCAGCTCCCCTCCTCGACGTCGCACATGACGGCGCTCAGGGCGCTGGACGCCCGGCTCAACTGCCTCCGCGCGCTCCCCGACGGGCTCGAGAACCTCGCCAACCTCGAGGCGCTCA ACGTCAGCCAGAACTTCCAGTTCCTCCGGGAGCTCCCCTACGCCGTCGGCCTCCTCGCCTCGCTCCGGGAGCTCGAC GTCAGCTACAACTCCATCGCCGCGCTCCCGGACTCCAT ]
[+] EMBL AK104574 [ ATGGGAGAGAAGAGGAGGCGTGGACACCTTAACCCTGCTGGTTTTGCAGGAGGGTTGCATGATCATGAGGAGAAGAAGAACGAGGAGCATAAGCTAGACATGAGTGGCATGTCCATGGATGCCCTCCCACACCTCACCATGTCTCTTGGTCAAGTCACCATCTTGGATCTCTCTAACAACAATCTTGAGAGCATCCCGGAGTCAATAATCGCTCGGCTGCTGAACGTG GT GGTGCT GGACGTGCGGTCCAACCAGCTGAAATCGCTGCCCAACTCCATCGGCTGCCTCTCCAAGCTCAAGGTCCTCAACGTCTCCGGCAACCTGCTCGAGTCCCTCCCCAACACCATCGAGGAGTGCCGTGCGCTGGAGGAGCTGCACGCCAACTTCAACGAG CTGACGAAGCTGCCGGACACGCTGGGGTTCGAGCTGCACAGCCTCCGGAAGCTGTCGGTGAACTCCAACAAGCTGGCGCAGCTCCCCTCCTCGACGTCGCACATGACGGCGCTCAGGGCGCTGGACGCCCGGCTCAACTGCCTCCGCGCGCTCCCCGACGGGCTCGAGAACCTCGCCAACCTCGAGGCGCTCA ACGTCAGCCAGAACTTCCAGTTCCTCCGGGAGCTCCCCTACGCCGTCGGCCTCCTCGCCTCGCTCCGGGAGCTCGAC GTCAGCTACAACTCCATCGCCGCGCTCCCGGACTCCATGGGCTGCCTCACCAAGCTCGCCAGGTTCAGCGCCGTCGGCAACCCGCTGGTGTCCCCGCCCATGGACGTCGTGGAGCAGGGCCTGGACGCCATGCGCGCCTACCTCACCGCGAGGATGAACGGCGGCGACGGCAAGAGGAAGAAGAAGGCGTGGCTGCCCAAGCTGGTCAAGTACAGCACCTTCACGGCGAGGATGACGCCCGGGCGCACCAGGGTGCACGAGAACACGGAGGGCCTCCTCATGTCGGACTACCGGTCGCTCAACGGCATCGCCTCGCCGAGGTT CCTCACCATGCT CTC GCC GCGCCGCCTCTTCTCGCCGCGGAGGAATTCGCCCA AGCA TTGTTGATATGGCCGATCCGATCCGCCTCTGCCTACTCTGTGTACTGGTTGCCTGTTTGCTTCAGGGGTGTACTTCAGATGATGTCATGCTCTCGTACTTAATTAGGATAGATATGATGATGCTGCTGCTGCTAGCTGCTACCGCTGCTGCAAGGTGTGTATATGTTCTCATGAAGAGGTTTGTAGCTTCGCATACAGTATATAGCTCTACAATTTTTGTTTGACGTAAAAAATG CTGTAGTACAATCTAGAGCATT GATGTACATAACAA GGGTA ]
[+] EMBL AK061732 [ ATGGGAGAGAAGAGGAGGCGTGGACACCTTAACCCTGCTGGTTTTGCAGGAGGGTTGCATGATCATGAGGAGAAGAAGAACGAGGAGCATAAGCTAGACATGAGTGGCATGTCCATGGATGCCCTCCCACACCTCACCATGTCTCTTGGTCAAGTCACCATCTTGGATCTCTCTAACAACAATCTTGAGAGCATCCCGGAGTCAATAATCGCTCGGCTGCTGAACGTG GT GGTGCT GGACGTGCGGTCCAACCAGCTGAAATCGCTGCCCAACTCCATCGGCTGCCTCTCCAAGCTCAAGGTCCTCAACGTCTCCGGCAACCTGCTCGAGTCCCTCCCCAACACCATCGAGGAGTGCCGTGCGCTGGAGGAGCTGCACGCCAACTTCAACGAG CTGACGAAGCTGCCGGACACGCTGGGGTTCGAGCTGCACAGCCTCCGGAAGCTGTCGGTGAACTCCAACAAGCTGGCGCAGCTCCCCTCCTCGACGTCGCACATGACGGCGCTCAGGGCGCTGGACGCCCGGCTCAACTGCCTCCGCGCGCTCCCCGACGGGCTCGAGAACCTCGCCAACCTCGAGGCGCTCA ACGTCAGCCAGAACTTCCAGTTCCTCCGGGAGCTCCCCTACGCCGTCGGCCTCCTCGCCTCGCTCCGGGAGCTCGAC GTCAGCTACAACTCCATCGCCGCGCTCCCGGACTCCATGGGCTGCCTCACCAAGCTCGCCAGGTTCAGCGCCGTCGGCAACCCGCTGGTGTCCCCGCCCATGGACGTCGTGGAGCAGGGCCTGGACGCCATGCGCGCCTACCTCACCGCGAGGATGAACGGCGGCGACGGCAAGAGGAAGAAGAAGGCGTGGCTGCCCAAGCTGGTCAAGTACAGCACCTTCACGGCGAGGATGACGCCCGGGCGCACCAGGGTGCACGAGAACACGGAGGGCCTCCTCATGTCGGACTACCGGTCGCTCAACGGCATCGCCTCGCCGAGGTT CCTCACCATGCT CTC GCC GCGCCGCCTCTTCTCGCCGCGGAGGAATTCGCCCA AGCA TTGTTGATATGGCCGATCCGATCCGCCTCTGCCTACTCTGTGTACTGGTTGCCTGTTTGCTTCAGGGGTGTACTTCAGATGATGTCATGCTCTCGTACTTAATTAGGATAGATATGATGATGCTGCTGCTGCTAGCTGCTACCGCTGCTGCAAGGTGTGTATATGTTCTCATGAAGAGGTTTGTAGCTTCGCATACAGTATATAGCTCTACAATTTTTGTTTGACGTAAAAAATG CTGTAGTACAATCTAGAGCATT GATGTACATAACAA GGGTA ]
[+] EMBL AA754386 [ cgagGTGGCATGTCCATNNCCNBCCTCCCACAACTCACCATGTCTCTTGGNCAAGTCACCATCTTGGATCTCTCTAACAACAATCTTGAGAGCATCCCGGAGTCAATAATCGCTCGGCTGCTGAACGTG GT GGTGCT GGACGTGCGGTCCAACCAGCTGAAATCGCTGCCCAACTCCATCGGCTGCCTCTCCAAGCTCAAGGTCCTCAACGTCTCCGGCAACCTGCTCGAGTCCCTCCCCAACACCATCGAGGAGTGCCGTGCGCTGGAGGAGCTGCACGCCAACTT AACGGGSCTTACGgargy ]
[-] EMBL CB657245 [ CAACCTCGAGGCGCTCA ACGTCAGCCAGAACTTCCAGTTCCTCCGGGAGCTCCCCTACGCCGTCGGCCTCCTCGCCTCGCTCCGGGAGCTTGAC GTCAGCTACAACTCCATCGCCGCGCTCCCGGACTCCATGGGCTGCCTCACCAAGCTCGCCAGGTTCAGCGCCGTCGGCAACCCGCTGGTGTCCCCGCCCATGGACGTCGTGGAGCAGGGCCTGGACGCCATGCGCGCCTACCTCACCGCGAGGATGAACGGCGGCGACGGCAAGAGGAAGAAGAAGGCGTGGCTGCCCAAGCTGGTCAAGTACAGCACCTTCACGGCGAGGATGACGCCCGGGCGCACCAGGGTGCACGAGAACACGGAGGGCCTCCTCATGTCGGACTACCGGTCGCTCAACGGCATCGCCTCGCCGAGGTT CCTCACCATGCT CTC GCC GCGCCGCCTCTTTTCGCCGCGGAGGAATTCGCCCA AGCA TTGTTGATATGGCCGATCCGATCCGCCTCTGCCTACTCTGTGTACTGGTTGCCTGTTTGCTTCAGGGGTGTACTTCAGATGATGTCATGCTCTCGTACTTAATTAGGATAGATATGATGATGCTGCTGCTGCTAGCTGCTACCGCTGCTGCAAGGTGTGTATATGTTCTCATGAAGAGGTTTGTAGCTTCGCATCCAGTATATAGCTCTACAATTTTTGTTTGACGTAAAAAATG CTGTAGTACAATCTAGAGC ]
[+] EMBL BE040866 [ CTCACACGTCAGCCAGAACTTCCAGTTCCTCCGGGAGCTCCCCTACGCCGTCGGCCTCCTCGCCTCGCTCCGGGAGCTCGACTGTCAGCTACAACTCCATCGCCGCGCTCCCGGACTCCATGGGCTGCCTCACCAAGCGCGTCAGGTTCAGCGCCGTCGGCAACCCGCTGGTGTCCCCGCCCATGGACGTCGTGGAGCAGGGCCTGGACGCCATGCGCGCCTACCTCACCGCGAGGATGAACGGCGGCGACGGCAAGAGGAAGAAGAAGGCGTGGCTGCCCAAGCTGGTCAAGTACAGCACCTTCACGGCGAGGATGACGCCCGGGCGCACCAGGGTGCACGAGAACACGGAGGGCCTCCTCATGTCGGACTACCGGTCGCTCAACGGCATCGCCTCGCCGAGGTT CCTCACCATGCT CTC GCC GCGCCGCCTCTTCTCGCCGCGGAGGAATTCGCCCA AGCA TTGTTGATATGGCCGATCCGATCCGCCTCTGCCTACTCTGTGTACTGGTTGCCTGTTTGCTTCAGGGGTGGACTTCAGATGATGTCATGCTCTCGTACTTAATTAGGATAGATATGATGATGCTGGTGCTGCTAGCTGCTACCGCTGCTGCAAGGTGTGTATATGTTCTCATGAAGAGGTTTGTAGCTTCGCATACAGGATATAGCTCTACAATTTTTGGTTGACGGAAAAAATGCCTGTAG ACAATCTAGAGCATTGGATG ACCTAACAAGGGGTAATTTTCTT CATGGCTGGTTGGTAAGCACCAAAAAAAAAAAGGNGG ]
[-] EMBL CB658730 [ CGCCGCGCTCCCGGACTCCATGGGCTGCCTCACCAAGCTCGCCAGGTTCAGCGCCGTCGGCAACCCGCTGGTGTCCCCGCCCATGGACGTCGTGGAGCAGGGCCTGGACGCCATGCGCGCCTACCTCACCGCGAGGATGAACGGCGGCGACGGCAAGAGGAAGAAGAAGGCGTGGCTGCCCAAGCTGGTCAAGTACAGCACCTTCACGGCGAGGATGACGCCCGGGCGCACCAGGGTGCACGAGAACACGGAGGGCCTCCTCATGTCGGACTACCGGTCGCTCAACGGCATCGCCTCGCCGAGGTT CCTCACCATGCT CTC GCC GCGCCGCCTCTTTTCGCCGCGGAGGAATTCGCCCA AGCA TTGTTGATATGGCCGATCCGATCCGCCTCTGCCTACTCTGTGTACTGGTTGCCTGTTTGCTTCAGGGGTGTACTTCAGATGATGTCATGCTCTCGTACTTAATTAGGATAGATATGATGATGCTGCTGCTGCTAGCTGCTACCGCTGCTGCAAGGTGTGTATATGTTCTCATGAAGAGGTTTGTAGCTTCGCATCCAGTATATAGCTCTACAATTTTTGTTTGACGTAAAAAATG CTGTAGTACAATCTAGAGCATT GATGTACATAACAA GGGTAA ]
[-] EMBL CF337740 [ AAGAAGGCGTGGCTGCCCAAGCTGGTCAAGTACAGCACCTTCACGGCGAGGATGACGCCCGGGCGCACCAGGGTGCACGAGAACACGGAGGGCCTCCTCATGTCGGACTACCGGTCGCTCAACGGCATCGCCTCGCCGAGGTT CCTCACCATGCT CTC GCC GCGCCGCCTCTTCTCGCCGCGGAGGAATTCGCCCA AGCA TTGTTGATATGGCCGATCCGATCCGCCTCTGCCTACTCTGTGTACTGGTTGCCTGTTTGCTTCAGGGGTGTACTTCAGATGATGTCATGCTCTCGTACTTAATTAGGATAGATATGATGATGCTGCTGCTGCTAGCTGCTACCGCTGCTGCAAGGTGTGTATATGTTCTCATGAAGAGGTTTGTAGCTTCGCATACAGTATATAGCTCTACAATTTTTGTTTGACGTAAAAAATG CTGTAGTACAATCTAGAGCATT GATGTACATAACAA GGGTAATTTTCTTCCATGTCTGTTTGTTAAGCACCAAAAAA ]
[+] EMBL BI809168 [ CTCATGTCGGACTACCCGTCGCTCAACGGCATCGCCTCCCCGAGGTTCCCTCACCATGCT CTC GCC GCGCCGCCTCTTCTCGCC CGGAGGAATTCGCCCACAGCACTTGTTGATAT GCCGATCCGATCCGCCTCTGCCTACTCTGTGTACTGGTTGCCTGTTTGCTTCAGGGGTGTACTTCAGATGATGTCATGCTCTCGTACTTAATTAGGATAGATATGATGATGCTGCTGCTGCTAGCTGCTACCGCTGCTGCAAGGTGTGTATATGTTCTCATGAAGAGGTTTGTAGCTTCGCATACAGTATATAGCTCTAC ATTTTTGTTTGACGTAAAAAATG CTGTAGTAC ATCTAGAGCCTT GATGTACATAACCA GGGTAATTTTCTTCaaaaaaaa ]
[+] EMBL BI810826 [ T CCTCACCATGCTGCTCAGCCAGCGCCGCCTCTTCTCGCCGCGGAGGAATTCGCCCA AGCA TTGTTGATAT GCCGATCCGATCCGCCTCTGCCTACTCTGTGTACTGGTTGCCTGTTTGCTTCAGGGGTGTACTTCAGATGATGTCATGCTCTCGTACTTAATTAGGATAGATATGATGATGCTGCTGCTGCTAGCTGCTACCGCTGCTGCAAGGTGTGTATATGTTCTCATGAAGAGGTTTGTAGCTTCGCATACAGTATATAGCTCTACAATTTTTGTTTGACGTAAAAAATG CTGTAGTACAATCTAGAGCATT GATGTACATAACAA GGGTAATTTTCTTCCATGTCTGTTTGTTAAGCACCACTGATGCAGTGTTCTGGGTAAAAAA]
consensusID : consensus_14032#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 597 fasta sequence
[CGGCGAGGATGACGCCCGGGCGCACCAGGGTGCACGAGAACCCGGAGGCCCTCCTCATGTCGGACTACCGGTCGCTCAACGGCATCGCCTCCCGAGGTTCCATCACCATGCTCTCCCGCGCCGCTTCTTCTCCCGCGGAGGAATTCGCCCAAGCATTTGTTGATATGCCCGATCCGATCCGCCCTCGGCCTACTCTGTGTACTGGTTGCCTGTTTGCTTCAGGGGTGTACATTTCCAAGAATGGAATTGGTCCAATGGCTTCCTCCGGTTACCATTGTAAAATTTTTAGGGGGAATTAAGAATTATTGGGAATGGAATTGGCTTGCCTTGGCCTGGCTTAAGCCATTGGCCTTACCCCGGCTGGCCTTGCCCAAAGGTTGTTTGGTATAATTAAATGGTTTTCCTTCCAAGTAAAAGGAAGGTTCTTTGGTTAAGGCCTTTTTTCCCGCCCAAATTCACCACAGGTTAATTTAATTAACGGCCATTCCCTCAACCCACAAATGTTTTTCTGGTTTCTTTCGAACCCGTTTAAAAAATCTTAGTACAATCTAGACCATTGATGTACATAACAAGGGTAATTTTCTTCCAAAAAAAAAA]
[+] EMBL BI811657 [CGGCGAGGATGACGCCCGGGCGCACCAGGGTGCACGAGAACCCGGAGGCCCTCCTCATGTCGGACTACCGGTCGCTCAACGGCATCGCCTCCCGAGGTTCCATCACCATGCTCTCCCGCGCCGCTTCTTCTCCCGCGGAGGAATTCGCCCAAGCATTTGTTGATATGCCCGATCCGATCCGCCCTCGGCCTACTCTGTGTACTGGTTGCCTGTTTGCTTCAGGGGTGTACATTTCCAAGAATGGAATTGGTCCAATGGCTTCCTCCGGTTACCATTGTAAAATTTTTAGGGGGAATTAAGAATTATTGGGAATGGAATTGGCTTGCCTTGGCCTGGCTTAAGCCATTGGCCTTACCCCGGCTGGCCTTGCCCAAAGGTTGTTTGGTATAATTAAATGGTTTTCCTTCCAAGTAAAAGGAAGGTTCTTTGGTTAAGGCCTTTTTTCCCGCCCAAATTCACCACAGGTTAATTTAATTAACGGCCATTCCCTCAACCCACAAATGTTTTTCTGGTTTCTTTCGAACCCGTTTAAAAAATCTTAGTACAATCTAGACCATTGATGTACATAACAAGGGTAATTTTCTTCCAAAAAAAAAA]
consensusID : consensus_14032#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 377 fasta sequence
[CCGGGGAGGAATTCGCCCAAGCATTGTTGATATGCCCGATCCGATCCGCCTTTGCTTATTTTGTGTACTGGTTGCCTGTTTGCTTCAGGGGTGTACTTCAGATGATGTCAGGCTTTGGTACTTAATTAGGATAGATATGATGATGCTGCTGCTGCAAGCTGCTCCCGCTGCTGCAAGGTGTGTATATGTTTTCATGAAGAGGTTTGTAGCTTGGCATCCAGTATATAGCTTTACAATTTTTGTTTGAGGTAAAAAATGCTGTAGTCCAATTTAGAGCATTGATGTACATAACAAGGGTAATTTTTTTCCATGTCTGTTTGTTAAGCCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACACTGTCATGCCGT]
[-] EMBL CF296843 [CCGGGGAGGAATTCGCCCAAGCATTGTTGATATGCCCGATCCGATCCGCCTTTGCTTATTTTGTGTACTGGTTGCCTGTTTGCTTCAGGGGTGTACTTCAGATGATGTCAGGCTTTGGTACTTAATTAGGATAGATATGATGATGCTGCTGCTGCAAGCTGCTCCCGCTGCTGCAAGGTGTGTATATGTTTTCATGAAGAGGTTTGTAGCTTGGCATCCAGTATATAGCTTTACAATTTTTGTTTGAGGTAAAAAATGCTGTAGTCCAATTTAGAGCATTGATGTACATAACAAGGGTAATTTTTTTCCATGTCTGTTTGTTAAGCCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACACTGTCATGCCGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14032#0 ATACATCCCGCGCCTTCTTCCTCCTCAGCTTTGCCGAGACCTCGTTGCCTCAAGCCGTGT 60
consensus_14032#2 ------------------------------------------------------------
consensus_14032#1 ------------------------------------------------------------
consensus_14032#0 TGCGTGCTGCATGCTCTGAATTGAAGAACTCTCTTGAGCCTGACCAGGTATATCAGAAGT 120
consensus_14032#2 ------------------------------------------------------------
consensus_14032#1 ------------------------------------------------------------
consensus_14032#0 GGAGAAGAAGATTGGAAGCATGAGGGAAATGGGAGAGAAGAGGAGGCGTGGACACCTTAA 180
consensus_14032#2 ------------------------------------------------------------
consensus_14032#1 ------------------------------------------------------------
consensus_14032#0 CCCTGCTGGTTTTGCAGGAGGGTTGCATGATCATGAGGAGAAGAAGAACGAGGAGCATAA 240
consensus_14032#2 ------------------------------------------------------------
consensus_14032#1 ------------------------------------------------------------
consensus_14032#0 GCTAGACATGAGTGGCATGTCCATGGATGCCCTCCCACACCTCACCATGTCTCTTGGTCA 300
consensus_14032#2 ------------------------------------------------------------
consensus_14032#1 ------------------------------------------------------------
consensus_14032#0 AGTCACCATCTTGGATCTCTCTAACAACAATCTTGAGAGCATCCCGGAGTCAATAATCGC 360
consensus_14032#2 ------------------------------------------------------------
consensus_14032#1 ------------------------------------------------------------
consensus_14032#0 TCGGCTGCTGAACGTGGTGGTGCTGGACGTGCGGTCCAACCAGCTGAAATCGCTGCCCAA 420
consensus_14032#2 ------------------------------------------------------------
consensus_14032#1 ------------------------------------------------------------
consensus_14032#0 CTCCATCGGCTGCCTCTCCAAGCTCAAGGTCCTCAACGTCTCCGGCAACCTGCTCGAGTC 480
consensus_14032#2 ------------------------------------------------------------
consensus_14032#1 ------------------------------------------------------------
consensus_14032#0 CCTCCCCAACACCATCGAGGAGTGCCGTGCGCTGGAGGAGCTGCACGCCAACTTCAACGA 540
consensus_14032#2 ------------------------------------------------------------
consensus_14032#1 ------------------------------------------------------------
consensus_14032#0 GCTGACGAAGCTGCCGGACACGCTGGGGTTCGAGCTGCACAGCCTCCGGAAGCTGTCGGT 600
consensus_14032#2 ------------------------------------------------------------
consensus_14032#1 ------------------------------------------------------------
consensus_14032#0 GAACTCCAACAAGCTGGCGCAGCTCCCCTCCTCGACGTCGCACATGACGGCGCTCAGGGC 660
consensus_14032#2 ------------------------------------------------------------
consensus_14032#1 ------------------------------------------------------------
consensus_14032#0 GCTGGACGCCCGGCTCAACTGCCTCCGCGCGCTCCCCGACGGGCTCGAGAACCTCGCCAA 720
consensus_14032#2 ------------------------------------------------------------
consensus_14032#1 ------------------------------------------------------------
consensus_14032#0 CCTCGAGGCGCTCAACGTCAGCCAGAACTTCCAGTTCCTCCGGGAGCTCCCCTACGCCGT 780
consensus_14032#2 ------------------------------------------------------------
consensus_14032#1 ------------------------------------------------------------
consensus_14032#0 CGGCCTCCTCGCCTCGCTCCGGGAGCTCGACGTCAGCTACAACTCCATCGCCGCGCTCCC 840
consensus_14032#2 ------------------------------------------------------------
consensus_14032#1 ------------------------------------------------------------
consensus_14032#0 GGACTCCATGGGCTGCCTCACCAAGCTCGCCAGGTTCAGCGCCGTCGGCAACCCGCTGGT 900
consensus_14032#2 ------------------------------------------------------------
consensus_14032#1 ------------------------------------------------------------
consensus_14032#0 GTCCCCGCCCATGGACGTCGTGGAGCAGGGCCTGGACGCCATGCGCGCCTACCTCACCGC 960
consensus_14032#2 ------------------------------------------------------------
consensus_14032#1 ------------------------------------------------------------
consensus_14032#0 GAGGATGAACGGCGGCGACGGCAAGAGGAAGAAGAAGGCGTGGCTGCCCAAGCTGGTCAA 1020
consensus_14032#2 ------------------------------------------------------------
consensus_14032#1 ------------------------------------------------------------
consensus_14032#0 GTACAGCACCTTCACGGCGAGGATGACGCCCGGGCGCACCAGGGTGCACGAGAACACGGA 1080
consensus_14032#2 ------------------------------------------------------------
consensus_14032#1 --------------CGGCGAGGATGACGCCCGGGCGCACCAGGGTGCACGAGAACCCGGA 46
consensus_14032#0 GGGCCTCCTCATGTCGGACTACCGGTCGCTCAACGGCATCGCCTCGCCGAGGTTCCTCAC 1140
consensus_14032#2 ------------------------------------------------------------
consensus_14032#1 GGCCCTCCTCATGTCGGACTACCGGTCGCTCAACGGCATCGCCTCCCGAGGTTCCATCAC 106
consensus_14032#0 CATGCTCTCGCCGCGCCGCCTCTTCTCGCCGCGGAGGAATTCGCCCAAGCATT-GTTGAT 1199
consensus_14032#2 ----------------------------CCGGGGAGGAATTCGCCCAAGCATT-GTTGAT 31
consensus_14032#1 CATGCTCTC-CCGCGCCGCTTCTTCTC-CCGCGGAGGAATTCGCCCAAGCATTTGTTGAT 164
*** ********************* ******
consensus_14032#0 ATGGCCGATCCGATCCGCCTCTG-CCTACTCTGTGTACTGGTTGCCTGTTTGCTTCAGGG 1258
consensus_14032#2 ATGCCCGATCCGATCCGCCTTTG-CTTATTTTGTGTACTGGTTGCCTGTTTGCTTCAGGG 90
consensus_14032#1 ATGCCCGATCCGATCCGCCCTCGGCCTACTCTGTGTACTGGTTGCCTGTTTGCTTCAGGG 224
*** *************** * * ** * *****************************
consensus_14032#0 GTGTAC--TTCAGATGATGTCAT-GCTCTCGTACTTAATTAGGATAGATATGATGATGCT 1315
consensus_14032#2 GTGTAC--TTCAGATGATGTCAG-GCTTTGGTACTTAATTAGGATAGATATGATGATGCT 147
consensus_14032#1 GTGTACATTTCCAAGAATGGAATTGGTCCAATGGCTTCCTCCGGTTACCATTGTAAAATT 284
****** *** * *** * * * * * * * * ** * * *
consensus_14032#0 GCTGCTGCTAGCTGCTACCGCTGCTGCAAGGTGTGTATATGTTCTCATGAAGAGGTTTGT 1375
consensus_14032#2 GCTGCTGCAAGCTGCTCCCGCTGCTGCAAGGTGTGTATATGTTTTCATGAAGAGGTTTGT 207
consensus_14032#1 TTTAGGGGGAATTAAGA--ATTATTGGGAATGGAAT-TGGCTTGCCTTGGCCTGGCTTAA 341
* * * * * ** * * * * ** * ** ** **
consensus_14032#0 AGCTTCG--CATACAGTATATAGCTCTAC--AATTTTTGTTTGACGTAA--AAAATGCTG 1429
consensus_14032#2 AGCTTGG--CATCCAGTATATAGCTTTAC--AATTTTTGTTTGAGGTAA--AAAATGCTG 261
consensus_14032#1 GCCATTGGCCTTACCCCGGCTGGCCTTGCCCAAAGGTTGTTTGGTATAATTAAATGGTTT 401
* * * * * * * ** * * ** ******* *** *** * *
consensus_14032#0 TAGTACAATCTAGAGCATTGATGTACATAACAAGGGTAATTTTCTTCCATGTCTGTTTGT 1489
consensus_14032#2 TAGTCCAATTTAGAGCATTGATGTACATAACAAGGGTAATTTTTTTCCATGTCTGTTTGT 321
consensus_14032#1 TCCTTCCAAGTAAAAGGAAGGTTCTTTGGTTAAGGCC--TTTTTTCCCGCCCAAATTCAC 459
* * * * ** * * * **** **** * ** **
consensus_14032#0 TAAGCACCAAAAAAAAAAAGGNGGGGGTAAAAAA-------------------------- 1523
consensus_14032#2 TAAGCCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACACTGTCATGCCGT---- 377
consensus_14032#1 CACAGGTTAATTTAATTAACGGCCATTCCCTCAACCCACAAATGTTTTTCTGGTTTCTTT 519
* ** ** ** **
consensus_14032#0 ------------------------------------------------------------
consensus_14032#2 ------------------------------------------------------------
consensus_14032#1 CGAACCCGTTTAAAAAATCTTAGTACAATCTAGACCATTGATGTACATAACAAGGGTAAT 579
consensus_14032#0 ------------------
consensus_14032#2 ------------------
consensus_14032#1 TTTCTTCCAAAAAAAAAA 597
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||