cluster # 14039

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Oryza sativa
cluster # 14039 cluster # 14039 Sequences # 15 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_14039#0 length = 1518 sequences # 8
consensus_14039#1 length = 685 sequences # 2

consensus_14039#2 length = 554 sequences # 4
consensus_14039#3 length = 318 sequences # 1

consensusID : consensus_14039#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 1518
fasta sequence

                              [TCTCCCTCTCCAAAACCCTAGCTTTCTCCTTCCCCTGCTTTGCGGCGCGCCAGCCAATCACCCCAAACCCCTCCCAGTCCCAGCGATGGATCAGCGCAAGGGCAGCGGCAGCGACGCCAACGGCGGCCTGGCGGAGGCGACGGCGTCGAGGCTGAGGTTCGAGGACCCCGACGAGGTCATGGAGGAGAACCCCGCCGCCGCCGCCGCCACCGTCGGGGCGGAGGAGGAAGGGGGAGAGGGAGGAGGAGGGGAGGAGGTGATCGGCAGCGACAAGACCAGCGCCGACTACTACTTCGACTCCTACTCCCACTTCGGTATTCATGAAGAAATGCTAAAAGATGTGGTTCGGACAAAATCATATCAAAATGTTATCACCCAGAACAGCTTTCTTTTCAAGGACAAAATAGTCCTTGATGTTGGTGCTGGGACTGGGATCCTCTCACTTTTCTGTGCAAAAGCAGGGGCTAAGCATGTCTATGCGATTGAGTGTTCTCAAATGGCAGATATGGCAAAGGAAATTGTGAAAACAAATGGATATTCTAATGTTATAACGGTAATAAAAGGGAAAGTGGAAGAAATTGAGCTTCCTGTCCCAAAAGTAGATGTAATAATCTCCGAATGGATGGGCTATTTCCTCCTGTTCGAGAATATGCTGAACACTGTTCTATATGCACGTGATAAATGGCTT-GCTGATGGT-GGTGTTGTCCTACCTGACAAAGCTTCTTTGCATCTTACTGCAATCGAAGATGCAGAATACAAAGAAGACAAAATTGAATTTTGGAATAATGTGTATGGCTTTGATATGCGCTGTATCAAGAAACAGGCAATGATGGAGCCACTTGTAGATACGGTGGATGCAAATCAGATTGTCACTAACTGCCAGTTACTGAAGACAATGGATATTTCCAAAATGACACCTGGAGATGCGTCCTTTACAGTACCATTTAAGTTAGTAGCAGAGCGTAATGACTATATCCATGCTCTTGTTGCCTATTTCAATGTGTCCTTCACCAAATGCCATAAGATGATGGGCTTCTCAACAGGCCCAAGATCAAAAGCCACTCACTGGAAGCAAACTGTTCTGTACCTGGAGGATGTACTGACCATCTGTGAGGGGGAAACCATCACAGGCAGTATGACTGTTACACCGAATAAAAAGAATCCCCGAGATATTGACATTAAGCTCTGCTACGCCCTAAGTGGGCATAGATGCCAAGTGTCAAGAACACAACACTACAAGATGCGGTGATCAATGCGAGCTCAGCTGCCCTGCAATCCATTAAATTTTGGTTGACCAAGTATCTTGTTTCGCAAACTGTGCTTGTTCCCGTGATCCTGTATTAACATACGTTA-TTTATGTTCTTTGGGATCTAAGCATAAGTAGAAAATAGATTGAACTGGCCTGCCGATATGAGATTTGCTATTTTGC-AAAACTATGTTGTCTTGCTGGCTGGTGGTATTGGTAATGAATGCGTTGACAATGATGATGGCAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AK099826             [TCTCCCTCTCCAAAACCCTAGCTTTCTCCTTCCCCTGCTTTGCGGCGCGCCAGCCAATCACCCCAAACCCCTCCCAGTCCCAGCGATGGATCAGCGCAAGGGCAGCGGCAGCGACGCCAACGGCGGCCTGGCGGAAGCGACGGCGTCGAGGCTGAGGTTCGAGGACCCCGACGAGGTCATGGAGGAGAACCCCGCCGCCGCCGCCGCCACCGTCGGGGCGGAGGAGGAAGGGGGAGAGGGAGGAGGAGGGGAGGAGGTGATCGGCAGCGACAAGACCAGCGCCGACTACTACTTCGACTCCTACTCCCACTTCGGTATTCATGAAGAAATGCTAAAAGATGTGGTTCGGACAAAATCATATCAAAATGTTATCACCCAGAACAGCTTTCTTTTCAAGGACAAAATAGTCCTTGATGTTGGTGCTGGGACTGGGATCCTCTCACTTTTCTGTGCAAAAGCAGGGGCTAAGCATGTCTATGCGATTGAGTGTTCTCAAATGGCAGATATGGCAAAGGAAATTGTGAAAACAAATGGATATTCTAATGTTATAACGGTAATAAAAGGGAAAGTGGAAGAAATTGAGCTTCCTGTCCCAAAAGTAGATGTAATAATCTCCGAATGGATGGGCTATTTCCTCCTGTTCGAGAATATGCTGAACACTGTTCTATATGCACGTGATAAATGGCTT GCTGATGGT GGTGTTGTCCTACCTGACAAAGCTTCTTTGCATCTTACTGCAATCGAAGATGCAGAATACAAAGAAGACAAAATTGAATTTTGGAATAATGTGTATGGCTTTGATATGCGCTGTATCAAGAAACAGGCAATGATGGAGCCACTTGTAGATACGGTGGATGCAAATCAGATTGTCACTAACTGCCAGTTACTGAAGACAATGGATATTTCCAAAATGACACCTGGAGATGCGTCCTTTACAGTACCATTTAAGTTAGTAGCAGAGCGTAATGACTATATCCATGCTCTTGTTGCCTATTTCAATGTGTCCTTCACCAAATGCCATAAGATGATGGGCTTCTCAACAGGCCCAAGATCAAAAGCCACTCACTGGAAGCAAACTGTTCTGTACCTGGAGGATGTACTGACCATCTGTGAGGGGGAAACCATCACAGGCAGTATGACTGTTACACCGAATAAAAAGAATCCCCGAGATATTGACATTAAGCTCTGCTACGCCCTAAGTGGGCATAGATGCCAAGTGTCAAGAACACAACACTACAAGATGCGGTGATCAATGCGAGCTCAGCTGCCCTGCAATCCATTAAATTTTGGTTGACCAAGTATCTTGTTTCGCAAACTGTGCTTGTTCCCGTGATCCTGTATTAACATACGTTA TTTATGTTCTTTGGGATCTAAGCATAAGTAGAAAATAGATTGAACTGGCCTGCCGATATGAGATTTGCTATTTTGC AAAACTATGTTGTCTTGCTGGCTGGTGGTATTGGTAATGAATGC                                             ]
[+] EMBL CF332690             [               CCTTAGCTTTCTCCTTCCCCTGCTTTGCGGCGCGCCAGCCAATCACCCCAAACCCCTCCCAGTCCCAGCGATGGATCAGCGCAAGGGCAGCGGCAGCGACGCCAACGGCGGCCTGGCGGAGGCGACGGCGTCGAGGCTGAGGTTCGAGGACCCCGACGAGGTCATGGAGGAGAACC   CCGCCGCCGCCGCCACCGTCGGGGCGGAGGAGGAAGGGGGAGAGGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL AU094746             [                    GCTTTCTCCTTCCCCTGCTTTGCGGCGCGCCACCNAATCACCCCAAACCCCTCCCAGTCCCAGCGATGGATCAGCGCAAGGGCAGCGGCAGCAACGCCAACGG GGCCTGGCGGAGGCGACGGCGT GAGGCTGAGGTTCGAGGACCCCGACGAGGTCATGGAGGAGAACCCCGCCGCCGCCGCCGCCACCGTCGGGGCGGAGGAGGAAGGGGGAGAAGGAGGAGGAGGGGAAGAGGTTATCGGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL BP184467             [                                                                    CCCTCCCAGTCCCAGCGATGGATCAGCGCAAGGGCAGCGGCAGCGACGCCAACGGCGGCCTGGCGGAGGCGACGGCGTCGAGGCTGAGGTTCGAGGACCCCGACGAGGTCATGGAGGAGAACCCCGCCGCCGCCGCCGCCACCGTCGGGGCGGAGGAGGAAGGGGGAGAGGGAGGAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CF324532             [                                                                                                                                                                                                                                                           AGGAGGTGATCGGCAGCGACAAGACCAGCGCCGACTACTACTTCGACTCCTACTCCCACTTCGGTATTCATGAAGAAATGCTAAAAGATGTGGTTCGGACAAAATCATATCAAAATGTTATCACCCAGAATAGCTTTCTTTTCAAGGACAAAATAGTCCTTGATGTTGGTGCTGGGACTGGGATCCTCTCACTTTTCTGTGCAAAAGCAGGGGCTAAGCATGTCTATGCGATTGAGTGTTCTCAAATGGCAGATATGGCAAAGGAAATTGTGAAAACAAATGGATATTCTAATGTTATAACGGTAATAAAAGGGAAAGTGGAAGAAATTGAGCTTCCTGTCCCAAAAGTAGATGTAATAATCTCCGAATGGATGGGCTATTTCCTCCTGTTCGAGAATATGCTGAACACTGTTCTATATGCACGTGATAAATGGCTTGGCTGATGGTGGGTGTTGTCCTACCTGACAAAGCTTCTTTGCATCTTACTGCAATCGAAGATGCAGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL BP184468             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ATGCGCTGTATCAAGAAACAGGCAATGATGGAGCCACTTGTAGATACGGTGGATGCAAATCAGATTGTCACTAACTGCCAGTTACTGAAGACAATGGATATTTCCAAAATGACACCTGGAGATGCGTCCTTTACAGTACCATTTAAGTTAGTAGCAGAGCGTAATGACTATATCCATGCTCTTGTTGCCTATTTCAATGTGTCCTTCACCAAATGCCATAAGATGATGGGCTTCTCAACAGGCCCAAGATCAAAAGCCACTCACTGGAAGCAAACTGTTCTGTACCTGGAGGATGTACTGACCATCTGTGAGGGGGAAACCATCACAGGCAGTATGACTGTTACACCGAATAAAAAGAATCCCCGAGATATTGACATTAAGCTCTGCTACGCCCTAAGTGGGCATAGATGCCAAGTGTCAAGAACACAACACTACAAGATGCGGTGATCAATGCGAGCTCAGCTGCCCTGCAATCCATTAAATTTTGGTTGACCAAGTATCTTGTTTCGCAAACTGTGCTTGTTCCCGTGATCCTGTATTAACATACGTTA TTTATGTTCTTTGGGATCTAAGCATAAGTAGAAAATAGATTGAACTGGCCTGCCGATATGAGATTTGCTATTTTGC AAAACTATGTTGTCTTGCTGGCTGGTGGTATTGGTAATGAATGCGTTGACAATGATGATGGCAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CF331354             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ATGATGGAGCCACTTGTAGATACGGTGGATGCAAATCAGATTGTCACTAACTGCCAGTTACTGAAGACAATGGATATTTCCAAAATGACACCTGGAGATGCGTCCTTTACAGTACCATTTAAGTTAGTAGCAGAGCGTAATGACTATATCCATGCTCTTGTTGCCTATTTCAATGTGTCCTTCACCAAATGCCATAAGATGATGGGCTTCTCAACAGGCCCAAGATCAAAAGCCACTCACTGGAAGCAAACTGTTCTGTACCTGGAGGATGTACTGACCATCTGTGAGGGGGAAACCATCACAGGCAGTATGACTGTTACACCGAATAAAAAGAATCCCCGAGATATTGACATTAAGCTCTGCTACGCCCTAAGTGGGCATAGATGCCAAGTGTCAAGAACACAACACTACGAGATGCGGTGATCAATGCGAGCTCAGCTGCCCTGCAATCCATTAAATTTTGGTTGACCAAGTATCTTGTTTCGCAAACTGTGCTTGTTCCCGTGATCCTGTATTAACATACG                                                                                                                                                                          ]
[+] EMBL BQ907528             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                gCCGTGATCCTGTATTAACATACGTTATTTTATGTTCTTTGGGATCTAAGCATATGTAG AAATAGATTGAACTGGCCTGCCGATATGAGATTTGCNATTTTGCAAAAACTATGTTGTCTTGCTGGCTGGTGGTATTGGTAATGAATGCGTTGACAATGATGATGGCAAAAA                      ]




>consensus_14039#0
TCTCCCTCTCCAAAACCCTAGCTTTCTCCTTCCCCTGCTTTGCGGCGCGCCAGCCAATCA
CCCCAAACCCCTCCCAGTCCCAGCGATGGATCAGCGCAAGGGCAGCGGCAGCGACGCCAA
CGGCGGCCTGGCGGAGGCGACGGCGTCGAGGCTGAGGTTCGAGGACCCCGACGAGGTCAT
GGAGGAGAACCCCGCCGCCGCCGCCGCCACCGTCGGGGCGGAGGAGGAAGGGGGAGAGGG
AGGAGGAGGGGAGGAGGTGATCGGCAGCGACAAGACCAGCGCCGACTACTACTTCGACTC
CTACTCCCACTTCGGTATTCATGAAGAAATGCTAAAAGATGTGGTTCGGACAAAATCATA
TCAAAATGTTATCACCCAGAACAGCTTTCTTTTCAAGGACAAAATAGTCCTTGATGTTGG
TGCTGGGACTGGGATCCTCTCACTTTTCTGTGCAAAAGCAGGGGCTAAGCATGTCTATGC
GATTGAGTGTTCTCAAATGGCAGATATGGCAAAGGAAATTGTGAAAACAAATGGATATTC
TAATGTTATAACGGTAATAAAAGGGAAAGTGGAAGAAATTGAGCTTCCTGTCCCAAAAGT
AGATGTAATAATCTCCGAATGGATGGGCTATTTCCTCCTGTTCGAGAATATGCTGAACAC
TGTTCTATATGCACGTGATAAATGGCTTGCTGATGGTGGTGTTGTCCTACCTGACAAAGC
TTCTTTGCATCTTACTGCAATCGAAGATGCAGAATACAAAGAAGACAAAATTGAATTTTG
GAATAATGTGTATGGCTTTGATATGCGCTGTATCAAGAAACAGGCAATGATGGAGCCACT
TGTAGATACGGTGGATGCAAATCAGATTGTCACTAACTGCCAGTTACTGAAGACAATGGA
TATTTCCAAAATGACACCTGGAGATGCGTCCTTTACAGTACCATTTAAGTTAGTAGCAGA
GCGTAATGACTATATCCATGCTCTTGTTGCCTATTTCAATGTGTCCTTCACCAAATGCCA
TAAGATGATGGGCTTCTCAACAGGCCCAAGATCAAAAGCCACTCACTGGAAGCAAACTGT
TCTGTACCTGGAGGATGTACTGACCATCTGTGAGGGGGAAACCATCACAGGCAGTATGAC
TGTTACACCGAATAAAAAGAATCCCCGAGATATTGACATTAAGCTCTGCTACGCCCTAAG
TGGGCATAGATGCCAAGTGTCAAGAACACAACACTACAAGATGCGGTGATCAATGCGAGC
TCAGCTGCCCTGCAATCCATTAAATTTTGGTTGACCAAGTATCTTGTTTCGCAAACTGTG
CTTGTTCCCGTGATCCTGTATTAACATACGTTATTTATGTTCTTTGGGATCTAAGCATAA
GTAGAAAATAGATTGAACTGGCCTGCCGATATGAGATTTGCTATTTTGCAAAACTATGTT
GTCTTGCTGGCTGGTGGTATTGGTAATGAATGCGTTGACAATGATGATGGCAAAAAAAAA
AAAAAAAAAAAAAAAAAA

consensusID : consensus_14039#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 685
fasta sequence

                              [TTTTTTGTTTATTCTGTGGATGCTTTTTATATTGTTTCTATCTGTCTTTTTCTGTTTACTTTGGATAGGGGCAAAATGACACCTGTAGATGCGTCCTTTACAGTACCATTTAAGTTATTAGCAGAGCGTAATGACTATATCCATGCTCTTGTTGCCTATTTCAATGTGTGCTTCACCAAATGCCATAAGATGATGGGCTTCTCAACAGGCCCAAGATCAAAAGCCACTCACTGGAAGCAAACTGTTCTGTACCTGGAGGATGTACTGACCATCTGTGAGGGGGAAACCAT-TACAGGGGGGATGACTGTTACACCGAATAAAAAGAATCCCCGAGATATTGACATTAAGCTCTGCTACGCCCTAAGTGGGCATAGATGCCAAGTGTCAAGAACACAACCACTACAAGATGCGGTGATCAATGCGAGCTCAGCTGCCCTGCAATCCATTAAATTTTGGTTGACCAAGTATCTTGTTTCGCAAACTGTGCTTGTTCCCGTGATCCTGTATTAACATACGTTATTTATGTTCTTTGGGATCTAAGCATAAGTAGAAAATAGATTGAACTGGCCTGCCGATATGAGATTTGCTATTTTGCAAAACTATGTTGTCTTGCTGGCTGGTGGTATTGGTAATGAATGCGTTGACAATGATGATGGCAATTGCTGTGTACGTTTTATGAAAAAAA]

[+] EMBL CF331443             [TTTTTTGTTTATTCTGTGGATGCTTTTTATATTGTTTCTATCTGTCTTTTTCTGTTTACTTTGGATAGGGGCAAAATGACACCTGTAGATGCGTCCTTTACAGTACCATTTAAGTTATTAGCAGAGCGTAATGACTATATCCATGCTCTTGTTGCCTATTTCAATGTGTGCTTCACCAAATGCCATAAGATGATGGGCTTCTCAACAGGCCCAAGATCAAAAGCCACTCACTGGAAGCAAACTGTTCTGTACCTGGAGGATGTACTGACCATCTGTGAGGGGGAAACCAT TACAGGGGGGATGACTGTTACAC                                                                                                                                                                                                                                                                                                                                                                                    ]
[-] EMBL CF332689             [                                                                       CAAAATGACACCTGGAGATGCGTCCTTTACAGTACCATTTAAGTTAGTAGCAGAGCGTAATGACTATATCCATGCTCTTGTTGCCTATTTCAATGTGTCCTTCACCAAATGCCATAAGATGATGGGCTTCTCAACAGGCCCAAGATCAAAAGCCACTCATTGGAAGCAAACTGTTCTGTACCTGGAGGATGTACTGACCATCTGTGAGGGGGAAACCATCTACAGGCAGTATGACTGTTACACCGAATAAAAAGAATCCCCGAGATATTGACATTAAGCTCTGCTACGCCCTAAGTGGGCATAGATGCCAAGTGTCAAGAACACAACCACTACAAGATGCGGTGATCAATGCGAGCTCAGCTGCCCTGCAATCCATTAAATTTTGGTTGACCAAGTATCTTGTTTCGCAAACTGTGCTTGTTCCCGTGATCCTGTATTAACATACGTTATTTATGTTCTTTGGGATCTAAGCATAAGTAGAAAATAGATTGAACTGGCCTGCCGATATGAGATTTGCTATTTTGCAAAACTATGTTGTCTTGCTGGCTGGTGGTATTGGTAATGAATGCGTTGACAATGATGATGGCAATTGCTGTGTACGTTTTATGAAAAAAA]




>consensus_14039#1
TTTTTTGTTTATTCTGTGGATGCTTTTTATATTGTTTCTATCTGTCTTTTTCTGTTTACT
TTGGATAGGGGCAAAATGACACCTGTAGATGCGTCCTTTACAGTACCATTTAAGTTATTA
GCAGAGCGTAATGACTATATCCATGCTCTTGTTGCCTATTTCAATGTGTGCTTCACCAAA
TGCCATAAGATGATGGGCTTCTCAACAGGCCCAAGATCAAAAGCCACTCACTGGAAGCAA
ACTGTTCTGTACCTGGAGGATGTACTGACCATCTGTGAGGGGGAAACCATTACAGGGGGG
ATGACTGTTACACCGAATAAAAAGAATCCCCGAGATATTGACATTAAGCTCTGCTACGCC
CTAAGTGGGCATAGATGCCAAGTGTCAAGAACACAACCACTACAAGATGCGGTGATCAAT
GCGAGCTCAGCTGCCCTGCAATCCATTAAATTTTGGTTGACCAAGTATCTTGTTTCGCAA
ACTGTGCTTGTTCCCGTGATCCTGTATTAACATACGTTATTTATGTTCTTTGGGATCTAA
GCATAAGTAGAAAATAGATTGAACTGGCCTGCCGATATGAGATTTGCTATTTTGCAAAAC
TATGTTGTCTTGCTGGCTGGTGGTATTGGTAATGAATGCGTTGACAATGATGATGGCAAT
TGCTGTGTACGTTTTATGAAAAAAA

consensusID : consensus_14039#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 554
fasta sequence

                              [TTCATGCTGTGTTGTAATTCTTGTATAATTTAATTGATGCAGGCCCAAGATCAAAAGCCACTCACTGGAAGCAAACTGTTCTGTACCTGGAGGATGTACTGACCATCTGTGAGGGGGAAACCATCACAGGCAGTATGACTGTTACACCGAATAAAAAGAATCCCCGAGATATTGACATTAAGCT-CTGCTACGCCCTAAGTGGGCATAGATGCCAAGTGTCAAGAACACAACACTACAAGATGCGGTGATCAATGCGAGCTCAGCTGCCCTGCAATCCATTAAATTTTGGTTGACCAAGTATCTTGTTTCGCAAACTGTGCTTGTTCCCGTGATCCTGTATTAACATACGTTATTTATGTTCTTTGGGATCTAAGCATAAGTAGAAAATAGATTGAACTGGCCTGCCGATATGAGATTTGCTATTTTGCAAAACTATGTTGTCTTGCTGGCTGGTGGTATTGGTAATGAATGCGTTGACAATGATGATGGCAATTGCTGTGTACGTTTTATGAAAATGGATCAATGACGTATTGCCAGTTTGCCAAAAAAAAAAA]

[+] EMBL AK059689             [TTCATGCTGTGTTGTAATTCTTGTATAATTTAATTGATGCAGGCCCAAGATCAAAAGCCACTCACTGGAAGCAAACTGTTCTGTACCTGGAGGATGTACTGACCATCTGTGAGGGGGAAACCATCACAGGCAGTATGACTGTTACACCGAATAAAAAGAATCCCCGAGATATTGACATTAAGCT CTGCTACGCCCTAAGTGGGCATAGATGCCAAGTGTCAAGAACACAACACTACAAGATGCGGTGATCAATGCGAGCTCAGCTGCCCTGCAATCCATTAAATTTTGGTTGACCAAGTATCTTGTTTCGCAAACTGTGCTTGTTCCCGTGATCCTGTATTAACATACGTTATCTATGTTCTTTGGGATCTAAGCATAAGTAGAAAATAGATTGAACTGGCCTGCCGATATGAGATTTGCTATTTTGCAAAACTATGTTGTCTTGCTGGCTGGTGGTATTGGTAATGAATGCGTTGACAATGATGATGGCAATTGCTGTGTACGTTTTATGAAAATGGATCAATGACGTATTGCCAG                 ]
[-] EMBL CF331355             [                                                                                          AGGATGTACTGACCATCTGTGAGGGGGAAACCATCACAGGCAGTATGACTGTTACACCGAATAAAAAGAATCCCCGAGATATTGACATTAAGCT CTGCTACGCCCTAAGTGGGCATAGATGCCAAGTGTCAAGAACACACCACTACGAGATGCGGTGATCAATGCGAGCTCAGCTGCCCTGCAATCCATTAAATTTTGGTTGACCAAGTATCTTGTTTCGCAAACTGTGCTTGTTCCCGTGATCCTGTATTAACATACGTTATTTATGTTCTTTGGGATTTAAGCATAAGTAGAAAATAGATTGAACTTGCCTGCCGATATGAGATTTGCTATTTTGCAAAACTATGTTGTCTTGCTGGCTGGTGGTATTGGTAATGAATGCGTTGACAATGATGATGGCAATTGCTGTGTACGTTTTATGAAAATGGATCAATGACGTATTGCCAGTTTGCCAAAAAAAAAAA]
[+] EMBL AU029671             [                                                                                                                                                         AAAAGAANCCCCGAGATATTGACATTAAGCTCCTG TACNCCCTAAGTGGGCATAGATGCCAAGTGTCAAGAACACAACACTACAAGATGCGGTGATCAATGCGAGCTCAGCTGCCCTGCAATCCATTAAATTTTGGTTGACCAAGTATCTTGTTTCGCAAACTGTGCTTGTTCCCGTGATCCTGTATTNACATACGTTATTTATGTTCTTTGGGATCTAAGCATAAGTAGAAAATAGATTGAACTGGCCTGCCGATATGAGATTTGCTATTTTGCAAAACTATGTTGTCTTGCTGGCTGGTGGTATTGGTAATGAATGCGTTGACAATGATGATGGCAATTGCTGTGTACGTTTTATGAAAATGGATCAATGACGTATTGCCNGTTTGCCAAAAAAAAA  ]
[+] EMBL BQ907896             [                                                                                                                                                                              ACATTAAGCT CTGCTACGCCCTAAGTGGGCATAGATGCCAAGTGTCAAGAACACAACACTACAAGATGCGGTGATCAATGCGAGCTCAGCTGCCCTGCAATCCATTAAATTTTGGTTGACCAAGTATCTTGTTTCGCAAACTGTGCTTGTTCCCGTGATCCTGTATTAACATACGTTANTTATGTTCTTTGGGATCTAAGCATATGTAGAAAATAGATTGAACTGGCCTGCCGATATGAGATTTGCTATTTTGC AAACTATGTTGTCTTGCT GCTGGTGGTATTGGTAATGAATGCGTTGACAATGATGATGGCAA                                                              ]




>consensus_14039#2
TTCATGCTGTGTTGTAATTCTTGTATAATTTAATTGATGCAGGCCCAAGATCAAAAGCCA
CTCACTGGAAGCAAACTGTTCTGTACCTGGAGGATGTACTGACCATCTGTGAGGGGGAAA
CCATCACAGGCAGTATGACTGTTACACCGAATAAAAAGAATCCCCGAGATATTGACATTA
AGCTCTGCTACGCCCTAAGTGGGCATAGATGCCAAGTGTCAAGAACACAACACTACAAGA
TGCGGTGATCAATGCGAGCTCAGCTGCCCTGCAATCCATTAAATTTTGGTTGACCAAGTA
TCTTGTTTCGCAAACTGTGCTTGTTCCCGTGATCCTGTATTAACATACGTTATTTATGTT
CTTTGGGATCTAAGCATAAGTAGAAAATAGATTGAACTGGCCTGCCGATATGAGATTTGC
TATTTTGCAAAACTATGTTGTCTTGCTGGCTGGTGGTATTGGTAATGAATGCGTTGACAA
TGATGATGGCAATTGCTGTGTACGTTTTATGAAAATGGATCAATGACGTATTGCCAGTTT
GCCAAAAAAAAAAA

consensusID : consensus_14039#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 318
fasta sequence

                              [TTACTTTATCGTGCTGATTGCAGGAAATGCTAAACCATGTGGTTCGGACAAAATCATATCAAAATGTTATCACCCAGAATAGCTTTCTTTTCAAGGACAAAATAGTCCTTGATGTTGGTGCTGGGACTGGGATCCTCTCACTTTTCTGTGCAAAAGCAGGGGCTAAGCATGTCTATGCGGTTAGTTTTCTAACATACTTTTATGTTTTCATTTTAATGCTGTGATAGTTTTGTTGTTCTAAATACACTATTTTGATGATCCCATTCTTGTTCTTTAATCTAAGACTGTTAGCCATTTGCTGCTTCACTATTTGATGAG]

[+] EMBL CB000584             [TTACTTTATCGTGCTGATTGCAGGAAATGCTAAACCATGTGGTTCGGACAAAATCATATCAAAATGTTATCACCCAGAATAGCTTTCTTTTCAAGGACAAAATAGTCCTTGATGTTGGTGCTGGGACTGGGATCCTCTCACTTTTCTGTGCAAAAGCAGGGGCTAAGCATGTCTATGCGGTTAGTTTTCTAACATACTTTTATGTTTTCATTTTAATGCTGTGATAGTTTTGTTGTTCTAAATACACTATTTTGATGATCCCATTCTTGTTCTTTAATCTAAGACTGTTAGCCATTTGCTGCTTCACTATTTGATGAG]




>consensus_14039#3
TTACTTTATCGTGCTGATTGCAGGAAATGCTAAACCATGTGGTTCGGACAAAATCATATC
AAAATGTTATCACCCAGAATAGCTTTCTTTTCAAGGACAAAATAGTCCTTGATGTTGGTG
CTGGGACTGGGATCCTCTCACTTTTCTGTGCAAAAGCAGGGGCTAAGCATGTCTATGCGG
TTAGTTTTCTAACATACTTTTATGTTTTCATTTTAATGCTGTGATAGTTTTGTTGTTCTA
AATACACTATTTTGATGATCCCATTCTTGTTCTTTAATCTAAGACTGTTAGCCATTTGCT
GCTTCACTATTTGATGAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_14039#1      ------------------------------------------------------------
consensus_14039#2      ------------------------------------------------------------
consensus_14039#0      TCTCCCTCTCCAAAACCCTAGCTTTCTCCTTCCCCTGCTTTGCGGCGCGCCAGCCAATCA 60
consensus_14039#3      ------------------------------------------------------------
                                                                                   

consensus_14039#1      ------------------------------------------------------------
consensus_14039#2      ------------------------------------------------------------
consensus_14039#0      CCCCAAACCCCTCCCAGTCCCAGCGATGGATCAGCGCAAGGGCAGCGGCAGCGACGCCAA 120
consensus_14039#3      ------------------------------------------------------------
                                                                                   

consensus_14039#1      ------------------------------------------------------------
consensus_14039#2      ------------------------------------------------------------
consensus_14039#0      CGGCGGCCTGGCGGAGGCGACGGCGTCGAGGCTGAGGTTCGAGGACCCCGACGAGGTCAT 180
consensus_14039#3      ------------------------------------------------------------
                                                                                   

consensus_14039#1      ------------------------------------------------------------
consensus_14039#2      ------------------------------------------------------------
consensus_14039#0      GGAGGAGAACCCCGCCGCCGCCGCCGCCACCGTCGGGGCGGAGGAGGAAGGGGGAGAGGG 240
consensus_14039#3      ------------------------------------------------------------
                                                                                   

consensus_14039#1      ------------------------------------------------------------
consensus_14039#2      ------------------------------------------------------------
consensus_14039#0      AGGAGGAGGGGAGGAGGTGATCGGCAGCGACAAGACCAGCGCCGACTACTACTTCGACTC 300
consensus_14039#3      ------------------------------------------------------------
                                                                                   

consensus_14039#1      ------------------------------------------------------------
consensus_14039#2      ------------------------------------------------------------
consensus_14039#0      CTACTCCCACTTCGGTATTCATGAAGAAATGCTAAAAGATGTGGTTCGGACAAAATCATA 360
consensus_14039#3      ------------------------------------------------------------
                                                                                   

consensus_14039#1      ------------------------------------------------------------
consensus_14039#2      ------------------------------------------------------------
consensus_14039#0      TCAAAATGTTATCACCCAGAACAGCTTTCTTTTCAAGGACAAAATAGTCCTTGATGTTGG 420
consensus_14039#3      ------------------------------------------------------------
                                                                                   

consensus_14039#1      ------------------------------------------------------------
consensus_14039#2      ------------------------------------------------------------
consensus_14039#0      TGCTGGGACTGGGATCCTCTCACTTTTCTGTGCAAAAGCAGGGGCTAAGCATGTCTATGC 480
consensus_14039#3      ------------------------------------------------------------
                                                                                   

consensus_14039#1      ------------------------------------------------------------
consensus_14039#2      ------------------------------------------------------------
consensus_14039#0      GATTGAGTGTTCTCAAATGGCAGATATGGCAAAGGAAATTGTGAAAACAAATGGATATTC 540
consensus_14039#3      ------------------------------------------------------------
                                                                                   

consensus_14039#1      ------------------------------------------------------------
consensus_14039#2      ------------------------------------------------------------
consensus_14039#0      TAATGTTATAACGGTAATAAAAGGGAAAGTGGAAGAAATTGAGCTTCCTGTCCCAAAAGT 600
consensus_14039#3      ------------------------------------------------------------
                                                                                   

consensus_14039#1      ------------------------------------------------------------
consensus_14039#2      ------------------------------------------------------------
consensus_14039#0      AGATGTAATAATCTCCGAATGGATGGGCTATTTCCTCCTGTTCGAGAATATGCTGAACAC 660
consensus_14039#3      ------------------------------------------------------------
                                                                                   

consensus_14039#1      ------------------------------------------------------------
consensus_14039#2      ------------------------------------------------------------
consensus_14039#0      TGTTCTATATGCACGTGATAAATGGCTTGCTGATGGTGGTGTTGTCCTACCTGACAAAGC 720
consensus_14039#3      ------------------------------------------------------------
                                                                                   

consensus_14039#1      ------------------------------------------------------------
consensus_14039#2      ------------------------------------------------------------
consensus_14039#0      TTCTTTGCATCTTACTGCAATCGAAGATGCAGAATACAAAGAAGACAAAATTGAATTTTG 780
consensus_14039#3      ------------------------------------------------------------
                                                                                   

consensus_14039#1      -------------------------------------------------------TTTTT 5
consensus_14039#2      ------------------------------------------------------------
consensus_14039#0      GAATAATGTGTATGGCTTTGATATGCGCTGTATCAAGAAACAGGCAATGATGGAGCCACT 840
consensus_14039#3      ------------------------------------------------------------
                                                                                   

consensus_14039#1      TGTTTATTCTGTGGATGCTTTTTATATTGTTTCTATCTGTCTTTTTCTGTTTACTTTGGA 65
consensus_14039#2      ------------------------------------------------------------
consensus_14039#0      TGTAGATACGGTGGATGCAAATCAGATTGTCACTAACTGCCAGTTACTGAAGACAATGGA 900
consensus_14039#3      ------------------------------------------------------------
                                                                                   

consensus_14039#1      TAGGGGCAAAATGACACCTGTAGATGCGTCCTTTACAGTACCATTTAAGTTATTAGCAGA 125
consensus_14039#2      ------------------------------------------------------------
consensus_14039#0      TATTTCCAAAATGACACCTGGAGATGCGTCCTTTACAGTACCATTTAAGTTAGTAGCAGA 960
consensus_14039#3      ------------------------------------------------------------
                                                                                   

consensus_14039#1      GCGTAATGACTATATCCATGCTCTTGTTGCCTATTTCAATGTGTGCTTCACCAAATGCCA 185
consensus_14039#2      ----------------------------------TTCATGCTGTGTTGTAATTCTTGT-A 25
consensus_14039#0      GCGTAATGACTATATCCATGCTCTTGTTGCCTATTTCAATGTGTCCTTCACCAAATGCCA 1020
consensus_14039#3      ------------------------------------------------------------
                                                                                   

consensus_14039#1      TAAGATGATGGGCTTCTCAACAGGCCCAAGATCAAAAGCCACTCACTGGAAGCAAACTGT 245
consensus_14039#2      TAATTTAATTGAT------GCAGGCCCAAGATCAAAAGCCACTCACTGGAAGCAAACTGT 79
consensus_14039#0      TAAGATGATGGGCTTCTCAACAGGCCCAAGATCAAAAGCCACTCACTGGAAGCAAACTGT 1080
consensus_14039#3      ------------------------------------------------------------
                                                                                   

consensus_14039#1      TCTGTACCTGGAGGATGTACTGACCATCTGTGAGGGGGAAACCATTACAGGGGGGATGAC 305
consensus_14039#2      TCTGTACCTGGAGGATGTACTGACCATCTGTGAGGGGGAAACCATCACAGGCAGTATGAC 139
consensus_14039#0      TCTGTACCTGGAGGATGTACTGACCATCTGTGAGGGGGAAACCATCACAGGCAGTATGAC 1140
consensus_14039#3      ------------------------------------------------------------
                                                                                   

consensus_14039#1      TGTTACACCGAATAAAAAGAATCCCCGAGATATTGACATTAAGCTCTGCTACGCCCTAAG 365
consensus_14039#2      TGTTACACCGAATAAAAAGAATCCCCGAGATATTGACATTAAGCTCTGCTACGCCCTAAG 199
consensus_14039#0      TGTTACACCGAATAAAAAGAATCCCCGAGATATTGACATTAAGCTCTGCTACGCCCTAAG 1200
consensus_14039#3      --------------------------------------TTA--CTTTATCGTGCTGATTG 20
                                                             ***  ** *     **     *

consensus_14039#1      TGGGCATAGATG--CCAAGTGTCAAGAACACAACCACTACAAGATGCGGTGATCAATGCG 423
consensus_14039#2      TGGGCATAGATG--CCAAGTGTCAAGAACACAAC-ACTACAAGATGCGGTGATCAATGCG 256
consensus_14039#0      TGGGCATAGATG--CCAAGTGTCAAGAACACAAC-ACTACAAGATGCGGTGATCAATGCG 1257
consensus_14039#3      CAGGAAATGCTAAACCATGTGGTTCGGACAAAATCATATCAAAATGTTATCACC-----C 75
                         ** *  * *   *** ***    * *** **  *   *** ***   * * *      

consensus_14039#1      AGCTCAGCTGCCCTGCAATCCATTAAATTTTGGTTGACCAAGTATCTTGTTTCGCAAACT 483
consensus_14039#2      AGCTCAGCTGCCCTGCAATCCATTAAATTTTGGTTGACCAAGTATCTTGTTTCGCAAACT 316
consensus_14039#0      AGCTCAGCTGCCCTGCAATCCATTAAATTTTGGTTGACCAAGTATCTTGTTTCGCAAACT 1317
consensus_14039#3      AGAATAGCTTTCTTTTCAAGGACAAAATAGTCCTTGATGTTGGTGCTGGGACTGGGATCC 135
                       **   ****  * *   *   *  ****  *  ****    *   ** *    *  * * 

consensus_14039#1      GTGCTTGTTCCCGTGATCCTGTATTAACATACGTTATTTATGTTCTTTGGGATCTAAGCA 543
consensus_14039#2      GTGCTTGTTCCCGTGATCCTGTATTAACATACGTTATTTATGTTCTTTGGGATCTAAGCA 376
consensus_14039#0      GTGCTTGTTCCCGTGATCCTGTATTAACATACGTTATTTATGTTCTTTGGGATCTAAGCA 1377
consensus_14039#3      TCTCACTTTTCTGTGCAAAAGCAGGGGCTAAGCATGTCTATGCGGTTAGTTTTCTAA-CA 194
                          *   ** * ***     * *    *  *   * * ****   ** *   ***** **

consensus_14039#1      TAAGTAGAAAATAGATTGAACTGGCCTGCCGATATGAGATTTGCTATTTTGCAAAACTAT 603
consensus_14039#2      TAAGTAGAAAATAGATTGAACTGGCCTGCCGATATGAGATTTGCTATTTTGCAAAACTAT 436
consensus_14039#0      TAAGTAGAAAATAGATTGAACTGGCCTGCCGATATGAGATTTGCTATTTTGCAAAACTAT 1437
consensus_14039#3      TACTTTTAT----GTTTTCATTTTAATGCTGTGAT-AGTTTTGTTGTTCT----AAATAC 245
                       **  *  *     * **  * *    *** *  ** ** **** * ** *    ** ** 

consensus_14039#1      GTTGTCTTGCTGGCTGGTGGTATTGGTAATGAATGCGTTGACAATGATGATGGCAATTGC 663
consensus_14039#2      GTTGTCTTGCTGGCTGGTGGTATTGGTAATGAATGCGTTGACAATGATGATGGCAATTGC 496
consensus_14039#0      GTTGTCTTGCTGGCTGGTGGTATTGGTAATGAATGCGTTGACAATGATGATGGCAAAAAA 1497
consensus_14039#3      ACTATTTTGATGATCC-CATTCTTGTTCTTTAAT---CTAAGACTGTTAGC--CATTTGC 299
                         * * *** **        * *** *  * ***    * * * ** *     **     

consensus_14039#1      TGTGTACGTTTTATGAAAAAAA------------------------------------ 685
consensus_14039#2      TGTGTACGTTTTATGAAAATGGATCAATGACGTATTGCCAGTTTGCCAAAAAAAAAAA 554
consensus_14039#0      AAAAAAAAAAAAAAAAAAAAA------------------------------------- 1518
consensus_14039#3      TGCTT-CACTATTTGATGAG-------------------------------------- 318
                                      *  *