cluster # 14042

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Oryza sativa
cluster # 14042 cluster # 14042 Sequences # 15 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_14042#0 length = 2199 sequences # 9

consensus_14042#1 length = 1131 sequences # 6

consensusID : consensus_14042#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 9
consensus length = 2199
fasta sequence

                              [CTCTCGCTCTGTTACATCCTGCATCTTTGCTCTTCCAGGTTTCAGCATCCAAGGAGCAGCAGCTTGCTTGCTCTTCCCAAAAGGAGGAAGAGTCGAAGAGTGCGAGAGGCCCGAGCGCAAGCCTGAAGCCTCAAAGGCAAATCCTCCCCCACAGACTACCACAAGCTGAAGCTCGAGCGAGCTGTACGAATCCATATGCATCCCTTCAACTCCCTCCCCTCTCTTCCCTTTCTCGATTAGTGTTAGATCTGAGCTTACAGAGCTATAGCTCAAATCTGCGGCATTTGGGTTTTAGATGCGATCCTGGCTTTCGTGTCTCTTCTTCCCAGTTCGTTGTATTCCTGCTTCTTTTAGTCGATTTCGGACCAATTTAGGTGCGTGCAAGAAGCAGAAGTTTTACCTGTTGGCGTGTGATTGGGCGAAGTTCTTGGAATAGATTTGGGCGCAGAGGCATCGCGCAGCTATTCCCTGCCAAATCTTTACCCGTTTCGTTTTTTTTTTACTGTGATTTGGATTTATAAATGAGGTAAATATACCAAACAGTAGGATTTTTTTTTTCAGGAAGTCAGGATGAGATCATGGGAGAGGCGAAAATAATCAATAATGTGCCAAAGTGGGTATGAAACCCGACTACTAGTAGTTGACATCGTTGATTAGTGATTACTATGAAACAGCTTCGTGCTGTTGCATTTTTTGTGCTACTTGGCCACATATTTCAGAGTTTGTCGACTTGGAAATTGCACTATGAGTATATTGCGTGTTATAGAAAGCTAATTGCCTATTTTATGGAAGCACTTGGAGACCTCGAAAATCTTTTGTTGTCTCTTCATCCTACGTATTCTTTTTTTGCAATTCCAT-GGCCTATGCAACTTAACTGGGTTATCGAAATCTCACATCCTTCATTTTTTTATGTTAATTTATAAAATGAGGCAAGTTTTTTTTTTTCATTAGTTGCATCTTGACCTTATGAACTTTTTGTTGAACTGAAAATTTGTTGGGTAACAACTTCATTATCTTTTGCAGTTCTAATGTCTGGATATGGGTATGGGGACATTCACAACTGATGAAAGCGACAAACATGAAGAGAGCTACCTGTCGTTGGGTTTGACAGTATCACAGTCAAAGAAAAACAACACTGAATACCCAAGGTTCTGTTGCTTCTGGCGGCTTATCTTGATAGATCAGTTCAGAAGAATGAAGACTTACTAGATTCCAATAAGATAAAGGATTCAAGCACCATCTTTCATGGTCACAGGGCTCCAGATCTTAGTATAAAGCTTTATGCAGAGCGCATCTTCAAGTACTCAGAGTGCAGCCCATCTTGCTTTGTGTTGGCCCTCATCTACATGGAGAGATATCTACAGCAGCCACATGTGTACATGACGTCCCTTAGCGTTCATCGCTTGCTAATTACATCTGTGGTGGTTGCTGCCAAATTTACAGATGATGCGTAAGAATTCCCTTCATCTGCTATTCAGTTACATTATATATGCATCTGCTTTGTAGTACGCTGTAGCATGATCTACGCCTTTGATAAATCTTAGATATTACATACATTGCTTCCCAATAACTTTCTGAATACATTTCTTGCAGGTTTTTCAACAATGCATTCTATGCTAGAGTTGGGGGAATCAG-CACAGTAGAGAT-GAACCGACTTGAGCTGGATTTGTTGTTCAATCTGGACTT-CAGGCTGAAAGTGGATTTAGAGACGTTCGGAAGCTACTGCTTGCAATTGGAAAAAGAAACAATGGTTCTTGTAATAGATAGACCTATTCAACAAGTTCACGGCGTCAATAGCACTAAAGATTTGAGTCGCAACAGTAGCATTGACGAGTCTTGCAAGAGCGAGCTGATGCGGTACAGCAGTCAGGCTCTCCAAGGATGTAGCTGACCAACTTGATTTTACATCCTACATTTTTCACCAAGGGTTAGGACCA-CTAGAAATTCTTTCAAGAGTAAACAATTGTGCTTCAGATTGTGTTTAACTGTTCTGGAGCTTTTGGATGATAGGGCCCTTCTTTTTTTATTGTACCACTGTAATTCTTTTGAACCACGATGTTTGAATTTTCAC-CAGTTTATTGAAAGGCAACAAGTCTGAACATTATTCAATCTAACCAAGCTCAATACTGTAACATCATGATTTCAGTGATTATGTTGAATACTAACATCATGATTTCAGTACTACACAAGTAATATCTA]

[+] EMBL AK070478             [CTCTCGCTCTGTTACATCCTGCATCTTTGCTCTTCCAGGTTTCAGCATCCAAGGAGCAGCAGCTTGCTTGCTCTT CCAAAAGGAGGAAGAGTCGAAGAGTGCGAGAGGCCCGAGCGCAAGCCTGAAGCCTCAAAGGCAAATCCTCCCCCACAGACTACCACAAGCTGAAGCTCGAGCGAGCTGTACGAATCCATATGCATCCCTTCAACTCCCTCCCCTCTCTTCCCTTTCTCGATTAGTGTTAGATCTGAGCTTACAGAGCTATAGCTCAAATCTGCGGCATTTGGGTTTTAGATGCGATCCTGGCTTTCGTGTCTCTTCTTCCCAGTTCGTTGTATTCCTGCTTCTTTTAGTCGATTTCGGACCAATTTAGGTGCGTGCAAGAAGCAGAAGTTTTACCTGTTGGCGTGTGATTGGGCGAAGTTCTTGGAATAGATTTGGGCGCAGAGGCATCGCGCAGCTATTCCCTGCCAAATCTTTACCCGTTTCGTTTTTTTTTTACTGTGATTTGGATTTATAAATGAGGTAAATATACCAAACAGTAGGATTTTTTTTTTCAGGAAGTCAGGATGAGATCATGGGAGAGGCGAAAATAATCAATAATGTGCCAAAGTGGGTATGAAACCCGACTACTAGTAGTTGACATCGTTGATTAGTGATTACTATGAAACAGCTTCGTGCTGTTGCATTTTTTGTGCTACTTGGCCACATATTTCAGAGTTTGTCGACTTGGAAATTGCACTATGAGTATATTGCGTGTTATAGAAAGCTAATTGCCTATTTTATGGAAGCACTTGGAGACCTCGAAAATCTTTTGTTGTCTCTTCATCCTACGTATTCTTTTTTTGCAATTCCAT GGCCTATGCAACTTAACTGGGTTATCGAAATCTCACATCCTTCATTTTTTTATGTTAATTTATAAAATGAGGCAAGTTTTTTTTTTTCATTAGTTGCATCTTGACCTTATGAACTTTTTGTTGAACTGAAAATTTGTTGGGTAACAACTTCATTATCTTTTGCAGTTCTAATGTCTGGATATGGGTATGGGGACATTCACAACTGATGAAAGCGACAAACATGAAGAGAGCTACCTGTCGTTGGGTTTGACAGTATCACAGTCAAAGAAAAACAACACTGAATACCCAAGGTTCTGTTGCTTCTGGCGGCTTATCTTGATAGATCAGTTCAGAAGAATGAAGACTTACTAGATTCCAATAAGATAAAGGATTCAAGCACCATCTTTCATGGTCACAGGGCTCCAGATCTTAGTATAAAGCTTTATGCAGAGCGCATCTTCAAGTACTCAGAGTGCAGCCCATCTTGCTTTGTGTTGGCCCTCATCTACATGGAGAGATATCTACAGCAGCCACATGTGTACATGACGTCCCTTAGCGTTCATCGCTTGCTAATTACATCTGTGGTGGTTGCTGCCAAATTTACAGATGATGCGTAAGAATTCCCTTCATCTGCTATTCAGTTACATTATATATGCATCTGCTTTGTAGTACGCTGTAGCATGATCTACGCCTTTGATAAATCTTAGATATTACATACATTGCTTCCCAATAACTTTCTGAATACATTTCTTGCAGGTTTTTCAACAATGCATTCTATGCTAGAGTTGGGGGAATCAG CACAGTAGAGAT GAACCGACTTGAGCTGGATTTGTTGTTCAATCTGGACTT CAGGCTGAAAGTGGATTTAGAGACGTTCGGAAGCTACTGCTTGCAATTGGAAAAAGAAACAATGGTTCTTGTAATAGATAGACCTATTCAACAAGTTCACGGCGTCAATAGCACTAAAGATTTGAGTCGCAACAGTAGCATTGACGAGTCTTGCAAGAGCGAGCTGATGCGGTACAGCAGTCAGGCTCTCCAAGGATGTAGCTGACCAACTTGATTTTACATCCTACATTTTTCACCAAGGGTTAGGACCA CTAGAAATTCTTTCAAGAGTAAACAATTGTGCTTCAGATTGTGTTTAACTGTTCTGGAGCTTTTGGATGATAGGGCCCTTCTTTTTTTATTGTACCACTGTAATTCTTTTGAACCACGATGTTTGAATTTTCAC CAGTTTATTGAAAGGCAACAAGTCTGAACATTATTCAATCTAACCAAGCTCAATACTGTAACATCATGATTTCAGTGATTATGTTGAATACTAACATCATGATTTCAGTACTACACAAGTAATATCTA]
[+] EMBL CB627315             [                   TGCATCTTTGCTCTTCCAGGTTTCAGCATCCAAGGAGCAGCAGCTTGCTTGCTCTTCCCAAAAGGAGGAAGAGTCGAAGAGTGCGAGAGGCCCGAGCGCAAGCCTGAAGCCTCAAAGGCAAATCCTCCCCCACAGACTACCGCAAGCTGAAGCTCGAGCGAGCTGTACGAATCCATATGCATCCCTTCAACTCCCTCCCCTCTCTTCCCTTTCTCGATTAGTGTTAGATCTGAGCTTACAGAGCTATAGCTCAAATCTGTGGCATTTGGGTTTTAGATGCGATCCTGGCTTTCGTGTCTCTTCTTCCCAGTTCGTTGTATTCCTGCTTCTTTTAGTCGATTTCGGACCAATTTAGGTGCGTGCAAGAAGCAGAAGTTTTACCTGTTGGCGTGTGATTGGGCGAAGTTCTTGGAATAGATTTGGGCGCAGAGGCATCGCGCAGCTATTCCCTGCCAAATCTTTACCCGTTTCG TTTTTTTTTACTGTGATTTGGATTTATAAATGAGGTAAATATACCAAACAGTAGGATTTTTTTTTTCAGGAAGTCAGGATGAGATCATGGGAGAGGCGAAAATAATCAATAATGTGCCAAAGTGGGTATGAAACCCGACTACTAGTAGTTGACATCGTTGATTAGTGATTACTATGAAACAGCTTCGTGCTGTTGCATTTTTTGTGCTACTTGGCCACATATTTCAGAATTTGTCGACTTGGAAATTGCACTATGAGTATATTGCGTGTTATAGAAAGCTAATTGCCTATTTTATGGAAGCACTTGGAGACCTCG AAATCTTTTGTTGTCTCTTCATCCTACGTATTCTTTTTTTGCAATTCCATGGGGCTATGC ACTTAACTGGGNTATCGAAATCTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CF303243             [                         TTTGCTCTTCCAGGTTTCAGCATCCAAGGAGCAGCAGCTTGCTTGCTCTTCCCAAAAGGAGGAAGAGTCGAAGAGTGCGAGAGGCCCGAGCGCAAGCCTGAAGCCTCAAAGGCAAATCCTCCCCCACAGACTACCACAAGCTGAAGCTCGAGCGAGCTGTACGAATCCATATGCATCCCTTCAACTCCCTCCCCTCTCTTCCCTTTCTCGATTAGTGTTAGATCTGAGCTTACAGAGCTATAGCTCAAATCTGCGGCATTTGGGTTTTAGATGCGATCCTGGCTTTCGTGTCTCTTCTTCCCAGTTCGTTGTATTCCTGCTTCTTTTAGTCGATTTCGGACCAATTTAGGTGCGTGCAAGAAGCAGAAGTTTTACCTGTTGGCGTGTGATTGGGCGAAGTTCTTGGAATAGATTTGGGCGCAGAGGCATCGCGCAGCTATTCCCTGCCAAATCTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[-] EMBL CB627316             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               TTGTGTTGGCCCTCATCTACATGGAGAGATATCTACAGCAGCCACATGTGTACATGACGTCCCTTAGCGTTCATCGCTTGCTAATTACATCTGTGGTGGTTGCTGCCAAATTTACAGATGATGCGTAAGAATTCCCTTCATCTGCTATTCAGTTACATTATATATGCATCTGCTTTGTAGTACGCTATAGCATGATCTACGCCTTTGATAAATCTTAGATATTACATACATTGCTTCCCAATAACTTTCTGAATACATTTCTTGCAGGTTTTTCAACAATGCATTCTATGCTAGAGTTGGGGGAATCAG CACAGTAGAGAT GAACCGACTTGAGCTGGATTTGTTGTTCAATCTGGACTT CAGGCTGAAAGTGGATTTAGAGACGTTCGGAAGCTACTGCTTGCAATTGGAAAAAGAAACAATGGTTCTTGTAATAGATAGACCTATTCAACAAGTTCACGGCGTCAATAGCGCTAAAGATTTGAGTCGCAACAGTAGCATTGACGAGTCTTGCAAGAGCGAGCTGATGCGGTACAGCAGTCAGGCTCTCCAAGGATGTAGCTGACCAACTTGATTTTACATCCTACATTTTTCACCAAGGGTTAGGACCA CTAGAAATTCTTTCAAGAGTAAACAATTGTGCTTCAGATTGTGTTTAACTGTTCTGGAGCTTTTGGATGATAGGGCCCTTCTTTTTTTATTGTACCACTGTAATTCTTTTGAACCACGATGTTTGAATTTTCACGCAGTTTATTGAAAGGCAACAAGTCTGAACATTA                                                                                               ]
[+] EMBL AA750611             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                TTTCTTGCAGGTTTTTCAACAATGCATTCTATGCTAGAGTTGGGGGAATCAG CACAGTAGAGAT GAACCGACTTGAGCTGGATTTGTTGTTCAATCTGGACTT CAGGCTGAAAGTGGATTTAGAGACGTTCGGAAGCTACTGCTTGCAATTGGAAAAAGAAACAATGGTTCTTGTAATAGATAGACCTATTCAACAAGTTCACGGCGTCAATAGCGCTAAAGAT                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL AU095194             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  TAGAGTTGGGGGAATCAGCCACAGTAGAGATGGAACCGACTTGAGCTGGATTTGTTGTTCAATCTGGACTTCCAGGCTGAAAGTGGATTTAGAGACGTTCGGAAGCTACTGCTTGCAATTGGAAAAAGAAACAATGGTTCTTGTAATAGATAGACCTATTCAACAAGTTCACGGCGTCAATAGCACTAAAGATTTGAGTCGCAACAGTAGCATTGACGAGTCTTGCAAGAGCGAGCTGATGCGGTACAGCAGTCAGGCTCTCCAAGGATGTAGCTGACCAACTTGATTTTACATCCTACATTTTTCACCAAGGGTTAGGACCA CTAGAAATTCTTTCAAGAGTAAACAATTGTGCTTCAGATTGTGTTTAACTGTTCTGGAGCTTTTGGATGATAGGGCCCTTCTTTTTTTATTGTACCACTGTAATTCTTTTGAACCACGATGTTTGAATTTTCAC CAGTTTATTGAAAGGCAACAAGTCTGAACATTATTCAATCTAAaaaaaaaa                                                                             ]
[+] EMBL BI808256             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       CAGTAGAGAT GAACCGACTTGAGCTGGATTTGTTGTTCAATCTGGACTT CAGGCTGAAAGTGGATTTAGAGACGTTCGGAAGCTACTGCTTGCCATTGGAAAAAGCCACCATGGTTCTTGTAATAGATAGACCTATTCAACAAGTTCACGGCGTCAATAGTGCTAAAGATTTGAGTCGCAACAGTAGCATTGACGAGTCTTGCAAGAGCGAGCTGATGCGGTACAGCAGTCAGGCTCTCCAAGGATGTAGCTGACCAACTTGATTTTACATCCTACATTTTTCACCAAGGGTTAGGACCACCTAGAAATTCTTTCAAGAGTAAACCATTGTGCTTCAGATTGTGTTTAACTGTTCTGGAGCTTTTGGATGATAGGGCCCTTCTTTTTTTATTGTACC CTGTAATTCTTTTGAACC CGATGTTTGAATTTTCAC CAGTTTATTGAAAGGCAACCAGTCTGAACATTATTC ATCTAAaaa                                                                                  ]
[-] EMBL CF328932             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     CAATTGGAAAAAGAAACAATGGTTCTTGTAATAGATAGACCTATTCAACAAGTTCACGGCGTCAATAGCACTAAAGATTTGAGTCGCAACAGTAGCATTGACGAGTCTTGCAAGAGCGAGCTGATGCGGTACAGCAGTCAGGCTCTCCAAGGATGTAGCTGACCAACTTGATTTTACATCCTACATTTTTCACCAAGGGTTAGGACCA CTAGAAATTCTTTCAAGAGTAAACAATTGTGCTTCAGATTGTGTTTAACTGTTCTGGAGCTTTTGGATGATAGGGCCCTTCTTTTTTTATAGTACCACTGTAATTCTTTTGAACCACGATGTTTGAATTTTCAC CAGTTTATTGAAAGGCAACAAGTCTGAACATTATTCAATCTAACCAAGCTCAATACTGTAACATCATGATTTCAaaaaaa                                                ]
[-] EMBL CF279966             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           CACGGCGTCAATAGCACTAAAGATTTGAGTCGCAACAGTAGCATTGACGAGTCTTGCAAGAGCGAGCTGATGCGGTACAGCAGTCAGGCTCTCCAAGGATGTAGCTGACCAACTTGATTTTACATCCTACATTTTTCACCAAGGGTTAGGACCA CTAGAAATTCTTTCAAGAGTAAACAATTGTGCTTCAGATTGTGTTTAACTGTTCTGGAGCTTTTGGATGATAGGGCCCTTCTTTTTTTATTGTACCACTGTAATTCTTTTGAACCACGATGTT                                                                                                                                            ]




>consensus_14042#0
CTCTCGCTCTGTTACATCCTGCATCTTTGCTCTTCCAGGTTTCAGCATCCAAGGAGCAGC
AGCTTGCTTGCTCTTCCCAAAAGGAGGAAGAGTCGAAGAGTGCGAGAGGCCCGAGCGCAA
GCCTGAAGCCTCAAAGGCAAATCCTCCCCCACAGACTACCACAAGCTGAAGCTCGAGCGA
GCTGTACGAATCCATATGCATCCCTTCAACTCCCTCCCCTCTCTTCCCTTTCTCGATTAG
TGTTAGATCTGAGCTTACAGAGCTATAGCTCAAATCTGCGGCATTTGGGTTTTAGATGCG
ATCCTGGCTTTCGTGTCTCTTCTTCCCAGTTCGTTGTATTCCTGCTTCTTTTAGTCGATT
TCGGACCAATTTAGGTGCGTGCAAGAAGCAGAAGTTTTACCTGTTGGCGTGTGATTGGGC
GAAGTTCTTGGAATAGATTTGGGCGCAGAGGCATCGCGCAGCTATTCCCTGCCAAATCTT
TACCCGTTTCGTTTTTTTTTTACTGTGATTTGGATTTATAAATGAGGTAAATATACCAAA
CAGTAGGATTTTTTTTTTCAGGAAGTCAGGATGAGATCATGGGAGAGGCGAAAATAATCA
ATAATGTGCCAAAGTGGGTATGAAACCCGACTACTAGTAGTTGACATCGTTGATTAGTGA
TTACTATGAAACAGCTTCGTGCTGTTGCATTTTTTGTGCTACTTGGCCACATATTTCAGA
GTTTGTCGACTTGGAAATTGCACTATGAGTATATTGCGTGTTATAGAAAGCTAATTGCCT
ATTTTATGGAAGCACTTGGAGACCTCGAAAATCTTTTGTTGTCTCTTCATCCTACGTATT
CTTTTTTTGCAATTCCATGGCCTATGCAACTTAACTGGGTTATCGAAATCTCACATCCTT
CATTTTTTTATGTTAATTTATAAAATGAGGCAAGTTTTTTTTTTTCATTAGTTGCATCTT
GACCTTATGAACTTTTTGTTGAACTGAAAATTTGTTGGGTAACAACTTCATTATCTTTTG
CAGTTCTAATGTCTGGATATGGGTATGGGGACATTCACAACTGATGAAAGCGACAAACAT
GAAGAGAGCTACCTGTCGTTGGGTTTGACAGTATCACAGTCAAAGAAAAACAACACTGAA
TACCCAAGGTTCTGTTGCTTCTGGCGGCTTATCTTGATAGATCAGTTCAGAAGAATGAAG
ACTTACTAGATTCCAATAAGATAAAGGATTCAAGCACCATCTTTCATGGTCACAGGGCTC
CAGATCTTAGTATAAAGCTTTATGCAGAGCGCATCTTCAAGTACTCAGAGTGCAGCCCAT
CTTGCTTTGTGTTGGCCCTCATCTACATGGAGAGATATCTACAGCAGCCACATGTGTACA
TGACGTCCCTTAGCGTTCATCGCTTGCTAATTACATCTGTGGTGGTTGCTGCCAAATTTA
CAGATGATGCGTAAGAATTCCCTTCATCTGCTATTCAGTTACATTATATATGCATCTGCT
TTGTAGTACGCTGTAGCATGATCTACGCCTTTGATAAATCTTAGATATTACATACATTGC
TTCCCAATAACTTTCTGAATACATTTCTTGCAGGTTTTTCAACAATGCATTCTATGCTAG
AGTTGGGGGAATCAGCACAGTAGAGATGAACCGACTTGAGCTGGATTTGTTGTTCAATCT
GGACTTCAGGCTGAAAGTGGATTTAGAGACGTTCGGAAGCTACTGCTTGCAATTGGAAAA
AGAAACAATGGTTCTTGTAATAGATAGACCTATTCAACAAGTTCACGGCGTCAATAGCAC
TAAAGATTTGAGTCGCAACAGTAGCATTGACGAGTCTTGCAAGAGCGAGCTGATGCGGTA
CAGCAGTCAGGCTCTCCAAGGATGTAGCTGACCAACTTGATTTTACATCCTACATTTTTC
ACCAAGGGTTAGGACCACTAGAAATTCTTTCAAGAGTAAACAATTGTGCTTCAGATTGTG
TTTAACTGTTCTGGAGCTTTTGGATGATAGGGCCCTTCTTTTTTTATTGTACCACTGTAA
TTCTTTTGAACCACGATGTTTGAATTTTCACCAGTTTATTGAAAGGCAACAAGTCTGAAC
ATTATTCAATCTAACCAAGCTCAATACTGTAACATCATGATTTCAGTGATTATGTTGAAT
ACTAACATCATGATTTCAGTACTACACAAGTAATATCTA

consensusID : consensus_14042#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1131
fasta sequence

                              [CTCTCGCTCTGTTACATCCTGCATCTTTGCTCTTCCAGGTTTCAGCATCCAAGGAGCAGCAGCTTGCTTGCTCTTCCCAAAAGGAGGAAGAGTCGAAGAGTGCGAGAGGCCCGAGCGCAAGCCTGAAGCCTCAAAGGCAAATCCTCCCCCACAGACTACCACAAGCTGAAGCTCGAGCGAGCTTTCTAATGTCTGGATATGGGTATGGGGACATTCACAACTGATGAAAGCGACAAACATGAAGAGAGCTACCTGTCGTT-GGGTTTGACAGTATCACAGTCAAA-GAAAAACAACAC-TGAATACCCCAA-GGTTCTGTTGCTTCTGGCGGCTTATCTTGATAGATCAGTTCAGAAGAATGAAGACTTACTAGATTCCAATAAGATAAAGGATTC-AAGCACCATCTTTCATGGTCACAGGGCTCCAGATCTTAGTATAAAGCTTTATGCAGAGCGCATCTTCAAGTACTCAGAGTGCAGCCCATCTTGCTTTGTGTTGG-CCCTCATCTA-CATGGAGAGATATCT-ACAGCAGCCACATGTGTACATGACGTCCCTTAGCGTTCATCGCTTGCTAATTACATCTGTGGGTGGTTGCTGCCAAATTTACAGATGATGCGTTTTTCAACAATGCATTCTATGCTAGAGTTGGGGGAATCAGCACAGTAGAGATGAACCGACTTGAGCTGGATTTGTTGTTCAATCTGGACTTCAGGCTGAAAGTGGATTTAGAGACGTTCGGAAGCTACTGCTTGCAATTGGAAAAAGAAACAATGGTTCTTGTAATAGATAGACCTATTCAACAAGTTCACGGCGTCAATAGCACTAAAGATTTGAGTCGCAACAGTAGCATTGACGAGTCTTGCAAGAGCGAGCTGATGCGGTACAGCAGTCAGGCTCTCCAAGGATGTAGCTGACCAACTTGATTTTACATCCTACATTTTTCACCAAGGGTTAGGACCACTAGAAATTCTTTCAAGAGTAAACAATTGTGCTTCAGATTGTGTTTAACTGTTCTGGAGCTTTTGGATGATAGGGCCCTTCNNNTTTTATTGTACCACTGTAANTCTTTTGAACCACGATGTTTGAATTTTCACCAGTTTATTGAAAGGCAACAAGTCTGAACATTATTCAAAAA]

[+] EMBL CF328931             [CTCTCGCTCTGTTACATCCTGCATCTTTGCTCTTCCAGGTTTCAGCATCCAAGGAGCAGCAGCTTGCTTGCTCTTCCCAAAAGGAGGAAGAGTCGAAGAGTGCGAGAGGCCCGAGCGCAAGCCTGAAGCCTCAAAGGCAAATCCTCCCCCACAGACTACCACAAGCTGAAGCTCGAGCGAGCTTTCTAATGTCTGGATATGGGTATGGGGACATTCACAACTGATGAAAGCGACAAACATGAAGAGAGCTACCTGTCGTT GGGTTTGACAGTATCACAGTCAAA GAAAAACAACAC TGAATACCCCAA GGTTCTGTTGCTTCTGGCGGCTTATCTTGATAGATCAGTTCAGAAGAATGAAGACTTACTAGATTCCAATAAGATAAAGGATTC AAGCACCATCTTTCATGGTCACAGGGCTCCAGATCTTAGTATAAAGCTTTATGCAGAGCGCATCTTCAAGTACTCAGAGTGCAGCCCATCTTGCTTTGTGTTGG CCCTCATCTA CATGGAGAGATATCT ACAGCAGCCACATGTGTACATGACGTCCCTTAGCGTTCATCGCTTGCTAATTACATCTGTGGGTGGTTGCTGCCAAATTTACAGATGATGCGTTTTTCAACAATGCATTCTATGCTAGAGTTGGGGGAATCAGCACAGTAGAGATGAACCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CF279965             [CTCTCGCTCTGTTACATCCTGCATCTTTGCTCTTCCAGGTTTCAGCATCCAAGGAGCAGCAGCTTGCTTGCTCTTCCCAAAAGGAGGAAGAGTCGAAGAGTGCGAGAGGCCCGAGCGCAAGCCTGAAGCCTCAAAGGCAAATCCTCCCCCACAGACTACCACAAGCTGAAGCTCGAGCGAGCTTTCTAATGTCTGGATATGGGTATGGGGACATTCACAACTGATGAAAGCGACAAACATGAAGAGAGCTACCTGTCGTT GGGTTTGACAGTATCACAGTCAAA GAAAAACAACAC TGAATACCCCAAGGGTTCTGTTGCTTCTGGCGGCTTATCTTGATAGATCAGTTCAGAAGAATGAAGACTTACTAGATTCCAATAAGATAAAGGATTC AAGCACCATCTTTCATGGTCACAGGGCTCCAGATCTTAGTATAAAGCTTTATGCAGAGCGCATCTTCAAGTACTCAGAGTGCAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL AU031014             [                 tngcCATCTTTGCTCTTCCAGGTTTCAGCATCCAAGGAGCAGCAGCTTGCTTGCTCTTCCCAAAAGGAGGAAGAGTCGAAGAGTGCGAGAGGCCCGAGCGCAA NCTGAAGCCTCAAAGGCAAATCCTCCCCCACAGACTACCACAAGCTGAAGCTCGAGCGAGCTTTCTAATGTCTGGATATGGGTATGGGGACATTCACAACTGATGAAAGCGACAAACATGAAGAGAGCTACCTGTCGTTGGGGTTTGACAGTATCACAGTCAAAGGAAAAACNACACTTGAATACCCCAA GGTTCTGTTGCTTCTGGCGGCTTATCTTGATAGATCAGTTCAGAAGAATGAAGACTTACTAGATTCCCATAAGAT AAGGGNTC AAGCACCATCTTTCATGGTCA ANGGGTCCAGATCTTAGTNT AAGCTTT TGCA AGGGGATTTTCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL C27354               [                            GCTCTTCCAGGTTTCAGCATCCAAGGAGCAGCAGCTTGCTTGCTCTTCCCAAAAGGAGGAAGAGTCGAAGAGTGCGAGAGGCCCGAGCGCAA NNTGAAGCCTCAAAGGCAAATCCTCCCCCACAGACTACCACAAGCTGAAGCTCGAGCGAGCTTTCTAATGTCTGGATATGGGTATGGGGACATTCACAACTGATGAAAGCGACAAACATGAAGAGAGCTACCTGTCGTT GGGTTTGACAGTATCACAGTCAAA GAAAAACAACAC TGAATACCCCAA GGTTCTGTTGCTTCTGGCGGCTTATCTTGATAGATCAGTTCAGAAGAATGAAGACTTACTAGATTCCAATAAGGTAAAGGGTTCAAAGCACCATCTTTCATG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL AU108869             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          CTTTGTGTTGGCCCCTCATCTACCATGGAGAGATATCTNCCAGCAGCCCCATGTGTACATGACGTCCCTTAGCGTTCATCGCTTGCTAATTACATCTGT GGTGGTTGCTGCCAAATTTACAGATGATGCGTTTTTCAACAATGCATTCTATGCTAGAGTTGGGGGAATCAGCACAGTAGAGATGAACCGACTTGAGCTGGATTTGTTGTTCAATCTGGACTTCAGGCTGAAAGTGGATTTAGAGACGTTCGGAAGCTACTGCTTGCAATTGGAAAAAGAAACAATGGTTCTTGTAATAGATAGACCTATTCAACAAGTTCACGGCGTCAATAGCACTAAAGATTTGAGTCGCAACAGTAGCATTGACGAGTCTTGCAAGAGCGAGCTGATGCGGTACAGCAGTCAGGCTCTCCAAGGATGTAGCTGACCAACTTGATTTTACATCCTACATTTTTCACCAAGGGTTAGGACCACTAGAAATTCTTTCAAGAGTAAACAATTGTGCTTCAGATTGTGTTTAACTGTTCTGGAGCTTTTGGATGATAGGGCCCTTCNNNTTTTATTGTACCACTGTAANTCTTTTGAACCACGATGTTTGAATTTTCACCAGTTTATTGAAAGGCAACAAGTCTGAACATTATTCAAAAA]
[+] EMBL AA750164             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  TGCAATTGGAAAAAGAAACAATGGTTCTTGTAATAGATAGACCTA TCAACAAGTTCACGGCGTCAATAGCACTAAAGATTTGAGTCGCAACAGTAGCATTGACGAGTCTTGCAAGAGCGAGCTGATGC GTACAGCAGT  NSCTCTCCAAGGATGTA                                                                                                                                                                                                                                  ]




>consensus_14042#1
CTCTCGCTCTGTTACATCCTGCATCTTTGCTCTTCCAGGTTTCAGCATCCAAGGAGCAGC
AGCTTGCTTGCTCTTCCCAAAAGGAGGAAGAGTCGAAGAGTGCGAGAGGCCCGAGCGCAA
GCCTGAAGCCTCAAAGGCAAATCCTCCCCCACAGACTACCACAAGCTGAAGCTCGAGCGA
GCTTTCTAATGTCTGGATATGGGTATGGGGACATTCACAACTGATGAAAGCGACAAACAT
GAAGAGAGCTACCTGTCGTTGGGTTTGACAGTATCACAGTCAAAGAAAAACAACACTGAA
TACCCCAAGGTTCTGTTGCTTCTGGCGGCTTATCTTGATAGATCAGTTCAGAAGAATGAA
GACTTACTAGATTCCAATAAGATAAAGGATTCAAGCACCATCTTTCATGGTCACAGGGCT
CCAGATCTTAGTATAAAGCTTTATGCAGAGCGCATCTTCAAGTACTCAGAGTGCAGCCCA
TCTTGCTTTGTGTTGGCCCTCATCTACATGGAGAGATATCTACAGCAGCCACATGTGTAC
ATGACGTCCCTTAGCGTTCATCGCTTGCTAATTACATCTGTGGGTGGTTGCTGCCAAATT
TACAGATGATGCGTTTTTCAACAATGCATTCTATGCTAGAGTTGGGGGAATCAGCACAGT
AGAGATGAACCGACTTGAGCTGGATTTGTTGTTCAATCTGGACTTCAGGCTGAAAGTGGA
TTTAGAGACGTTCGGAAGCTACTGCTTGCAATTGGAAAAAGAAACAATGGTTCTTGTAAT
AGATAGACCTATTCAACAAGTTCACGGCGTCAATAGCACTAAAGATTTGAGTCGCAACAG
TAGCATTGACGAGTCTTGCAAGAGCGAGCTGATGCGGTACAGCAGTCAGGCTCTCCAAGG
ATGTAGCTGACCAACTTGATTTTACATCCTACATTTTTCACCAAGGGTTAGGACCACTAG
AAATTCTTTCAAGAGTAAACAATTGTGCTTCAGATTGTGTTTAACTGTTCTGGAGCTTTT
GGATGATAGGGCCCTTCNNNTTTTATTGTACCACTGTAANTCTTTTGAACCACGATGTTT
GAATTTTCACCAGTTTATTGAAAGGCAACAAGTCTGAACATTATTCAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_14042#0      CTCTCGCTCTGTTACATCCTGCATCTTTGCTCTTCCAGGTTTCAGCATCCAAGGAGCAGC 60
consensus_14042#1      ------------------------------------------------------------
                                                                                   

consensus_14042#0      AGCTTGCTTGCTCTTCCCAAAAGGAGGAAGAGTCGAAGAGTGCGAGAGGCCCGAGCGCAA 120
consensus_14042#1      ------------------------------------------------------------
                                                                                   

consensus_14042#0      GCCTGAAGCCTCAAAGGCAAATCCTCCCCCACAGACTACCACAAGCTGAAGCTCGAGCGA 180
consensus_14042#1      ------------------------------------------------------------
                                                                                   

consensus_14042#0      GCTGTACGAATCCATATGCATCCCTTCAACTCCCTCCCCTCTCTTCCCTTTCTCGATTAG 240
consensus_14042#1      ------------------------------------------------------------
                                                                                   

consensus_14042#0      TGTTAGATCTGAGCTTACAGAGCTATAGCTCAAATCTGCGGCATTTGGGTTTTAGATGCG 300
consensus_14042#1      ------------------------------------------------------------
                                                                                   

consensus_14042#0      ATCCTGGCTTTCGTGTCTCTTCTTCCCAGTTCGTTGTATTCCTGCTTCTTTTAGTCGATT 360
consensus_14042#1      ------------------------------------------------------------
                                                                                   

consensus_14042#0      TCGGACCAATTTAGGTGCGTGCAAGAAGCAGAAGTTTTACCTGTTGGCGTGTGATTGGGC 420
consensus_14042#1      ------------------------------------------------------------
                                                                                   

consensus_14042#0      GAAGTTCTTGGAATAGATTTGGGCGCAGAGGCATCGCGCAGCTATTCCCTGCCAAATCTT 480
consensus_14042#1      ------------------------------------------------------------
                                                                                   

consensus_14042#0      TACCCGTTTCGTTTTTTTTTTACTGTGATTTGGATTTATAAATGAGGTAAATATACCAAA 540
consensus_14042#1      ------------------------------------------------------------
                                                                                   

consensus_14042#0      CAGTAGGATTTTTTTTTTCAGGAAGTCAGGATGAGATCATGGGAGAGGCGAAAATAATCA 600
consensus_14042#1      ------------------------------------------------------------
                                                                                   

consensus_14042#0      ATAATGTGCCAAAGTGGGTATGAAACCCGACTACTAGTAGTTGACATCGTTGATTAGTGA 660
consensus_14042#1      ------------------------------------------------------------
                                                                                   

consensus_14042#0      TTACTATGAAACAGCTTCGTGCTGTTGCATTTTTTGTGCTACTTGGCCACATATTTCAGA 720
consensus_14042#1      ------------------------------------------------------------
                                                                                   

consensus_14042#0      GTTTGTCGACTTGGAAATTGCACTATGAGTATATTGCGTGTTATAGAAAGCTAATTGCCT 780
consensus_14042#1      ------------------------------------------------------------
                                                                                   

consensus_14042#0      ATTTTATGGAAGCACTTGGAGACCTCGAAAATCTTTTGTTGTCTCTTCATCCTACGTATT 840
consensus_14042#1      ----------------------------------------CTCTCGCTCTGTTACATCCT 20
                                                                ****    *  *** *  *

consensus_14042#0      CTTTTTTTGCAATTCCATGGCCTATGCAACTTAACTGGGTTATCGAAATCTCACATCCTT 900
consensus_14042#1      GCATCTTTGCTCTTCCA-GGTTTCAGCATCCAA---GGAGCAGC-AGCTTGCTTGCTCTT 75
                          * *****  ***** **  *  *** *  *   **   * * *  *  *     ***

consensus_14042#0      CATTTTTTTATGTTAATTTATAAAATGAGGCAAGTTTTTTTTTTTCATTAGTTGCATCTT 960
consensus_14042#1      CCCAAAAGGAGGAAGAGTCGAAGAGTGCGAGAGGCCCG-----AGCGCAAGCCTGA---- 126
                       *        * *   * *   * * ** *  * *           *   **    *    

consensus_14042#0      GACCTTATGAACTTTTTGTTGAACTGAAAATTTGTTGGGTAACAACTTCATTATCTTTTG 1020
consensus_14042#1      AGCCTCAAAGGCAAATCCTCCCCCACAGACTACCACAAGCTGAAGCTCGAGCGAGCTTT- 185
                         *** *    *   *  *    *  * * *       *    * **  *      *** 

consensus_14042#0      CAGTTCTAATGTCTGGATATGGGTATGGGGACATTCACAACTGATGAAAGCGACAAACAT 1080
consensus_14042#1      -----CTAATGTCTGGATATGGGTATGGGGACATTCACAACTGATGAAAGCGACAAACAT 240
                            *******************************************************

consensus_14042#0      GAAGAGAGCTACCTGTCGTTGGGTTTGACAGTATCACAGTCAAAGAAAAACAACACTGAA 1140
consensus_14042#1      GAAGAGAGCTACCTGTCGTTGGGTTTGACAGTATCACAGTCAAAGAAAAACAACACTGAA 300
                       ************************************************************

consensus_14042#0      TACCC-AAGGTTCTGTTGCTTCTGGCGGCTTATCTTGATAGATCAGTTCAGAAGAATGAA 1199
consensus_14042#1      TACCCCAAGGTTCTGTTGCTTCTGGCGGCTTATCTTGATAGATCAGTTCAGAAGAATGAA 360
                       ***** ******************************************************

consensus_14042#0      GACTTACTAGATTCCAATAAGATAAAGGATTCAAGCACCATCTTTCATGGTCACAGGGCT 1259
consensus_14042#1      GACTTACTAGATTCCAATAAGATAAAGGATTCAAGCACCATCTTTCATGGTCACAGGGCT 420
                       ************************************************************

consensus_14042#0      CCAGATCTTAGTATAAAGCTTTATGCAGAGCGCATCTTCAAGTACTCAGAGTGCAGCCCA 1319
consensus_14042#1      CCAGATCTTAGTATAAAGCTTTATGCAGAGCGCATCTTCAAGTACTCAGAGTGCAGCCCA 480
                       ************************************************************

consensus_14042#0      TCTTGCTTTGTGTTGGCCCTCATCTACATGGAGAGATATCTACAGCAGCCACATGTGTAC 1379
consensus_14042#1      TCTTGCTTTGTGTTGGCCCTCATCTACATGGAGAGATATCTACAGCAGCCACATGTGTAC 540
                       ************************************************************

consensus_14042#0      ATGACGTCCCTTAGCGTTCATCGCTTGCTAATTACATCTGTGG-TGGTTGCTGCCAAATT 1438
consensus_14042#1      ATGACGTCCCTTAGCGTTCATCGCTTGCTAATTACATCTGTGGGTGGTTGCTGCCAAATT 600
                       ******************************************* ****************

consensus_14042#0      TACAGATGATGCGTAAGAATTCCCTTCATCTGCTATTCAGTTACATTATATATGCATCTG 1498
consensus_14042#1      TACAGATGATGCGT---------------------------------------------- 614
                       **************                                              

consensus_14042#0      CTTTGTAGTACGCTGTAGCATGATCTACGCCTTTGATAAATCTTAGATATTACATACATT 1558
consensus_14042#1      ------------------------------------------------------------
                                                                                   

consensus_14042#0      GCTTCCCAATAACTTTCTGAATACATTTCTTGCAGGTTTTTCAACAATGCATTCTATGCT 1618
consensus_14042#1      -------------------------------------TTTTCAACAATGCATTCTATGCT 637
                                                            ***********************

consensus_14042#0      AGAGTTGGGGGAATCAGCACAGTAGAGATGAACCGACTTGAGCTGGATTTGTTGTTCAAT 1678
consensus_14042#1      AGAGTTGGGGGAATCAGCACAGTAGAGATGAACCGACTTGAGCTGGATTTGTTGTTCAAT 697
                       ************************************************************

consensus_14042#0      CTGGACTTCAGGCTGAAAGTGGATTTAGAGACGTTCGGAAGCTACTGCTTGCAATTGGAA 1738
consensus_14042#1      CTGGACTTCAGGCTGAAAGTGGATTTAGAGACGTTCGGAAGCTACTGCTTGCAATTGGAA 757
                       ************************************************************

consensus_14042#0      AAAGAAACAATGGTTCTTGTAATAGATAGACCTATTCAACAAGTTCACGGCGTCAATAGC 1798
consensus_14042#1      AAAGAAACAATGGTTCTTGTAATAGATAGACCTATTCAACAAGTTCACGGCGTCAATAGC 817
                       ************************************************************

consensus_14042#0      ACTAAAGATTTGAGTCGCAACAGTAGCATTGACGAGTCTTGCAAGAGCGAGCTGATGCGG 1858
consensus_14042#1      ACTAAAGATTTGAGTCGCAACAGTAGCATTGACGAGTCTTGCAAGAGCGAGCTGATGCGG 877
                       ************************************************************

consensus_14042#0      TACAGCAGTCAGGCTCTCCAAGGATGTAGCTGACCAACTTGATTTTACATCCTACATTTT 1918
consensus_14042#1      TACAGCAGTCAGGCTCTCCAAGGATGTAGCTGACCAACTTGATTTTACATCCTACATTTT 937
                       ************************************************************

consensus_14042#0      TCACCAAGGGTTAGGACCACTAGAAATTCTTTCAAGAGTAAACAATTGTGCTTCAGATTG 1978
consensus_14042#1      TCACCAAGGGTTAGGACCACTAGAAATTCTTTCAAGAGTAAACAATTGTGCTTCAGATTG 997
                       ************************************************************

consensus_14042#0      TGTTTAACTGTTCTGGAGCTTTTGGATGATAGGGCCCTTCTTTTTTTATTGTACCACTGT 2038
consensus_14042#1      TGTTTAACTGTTCTGGAGCTTTTGGATGATAGGGCCCTTCNNNTTTTATTGTACCACTGT 1057
                       ****************************************   *****************

consensus_14042#0      AATTCTTTTGAACCACGATGTTTGAATTTTCACCAGTTTATTGAAAGGCAACAAGTCTGA 2098
consensus_14042#1      AANTCTTTTGAACCACGATGTTTGAATTTTCACCAGTTTATTGAAAGGCAACAAGTCTGA 1117
                       ** *********************************************************

consensus_14042#0      ACATTATTCAATCTAACCAAGCTCAATACTGTAACATCATGATTTCAGTGATTATGTTGA 2158
consensus_14042#1      ACATTATTCAAAAA---------------------------------------------- 1131
                       ***********                                                 

consensus_14042#0      ATACTAACATCATGATTTCAGTACTACACAAGTAATATCTA 2199
consensus_14042#1      -----------------------------------------