These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14048#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 605 fasta sequence [CGCCCAAGCCGNCGCTGCTCGTCCCGTCGCCCGCCGGCGCGGCA-CACCGCATCTGCTCGCGCCGGCGCCTCACGTCGCTTCAGCCTCCTCCTCTCGCCACAAATGACGCCGCCTCCTCTCACCGTAGATGCCGCCTCTCGTCAGATCTGACGGAGCTCAACATCGGTGCGGCCTTCTCCGTTCGGTCTCCACCATCCGGCCACTGCGTCTTCCCCATCAAGAACCTCAAGGACCTCGTCATCTTCTACTACCTTGTCTAGGTCATGGAGCTACTATTATTTGGTGAAGATCGAATGGTGGCAAAGATAGGACAACAATGCATGCAGTTACCATCTTCATTTCTTAAATTTAT-GGACAAATC-AGATTTT-GGGACCT-GGGAACTTAGTTT-GT-GGTTGTACTC-AATGTTCT-AGGTGTTGAT-GT-CCTTTGC-TT-CCGATTTT-ATTTT-ACCTTACTGTGGTGATGTATAAGAAAAACTTCTCAGTGGGCTCTTTGCTAAACACTAAAATTTAAATGCTTGTAATATTGTTTGGAGGGCACAGATTGACTTACCACATGTGAATTTGTCAACTGATACAATGCATAGCAGTGTTAATTATCGTTTTAAAAAA] [+] EMBL AU062787 [CGCCCAAGCCGNCGCTNCTCGTCCCGTCGCCGGCCGGCGCGGNA CACCGCATCTNCTCGCGCNGNCGNCTCACGGCGCTTCANCCTCCTCCTCTCGCCACAAATAACGCCGCCTCCTCTCACCGTAGATGCCGNCNTTNGTCAGATCTNACGGAGCTCAACATCGGTGCGGCCTTCTNCGTTCGGTNTNCACCATCCGGNCACTGCGTCTTCCCCATCAAGAACCTCAAGGACCTCGTCATCTTCTACTACCTTGTCTAGGTCATGGAGCTACTATNATTTGGTGAAGATCGAATGGTGGCAAAGATAGGNCAACAAattc ] [+] EMBL AU066321 [CGCCCAAGCCG CGCTGCTCGTCCCGTCGCCCGCCGGCGCGGCA CACCGCATCTGCTCGCGCCGGCGCCTCACGTCGNTTCAGCCTCCTCCTCTCGCCACAAATGACGGCGTCTCCTCTCACCGTAGATGCCGCCTCTCGTCAGATCTGACGGAGCTCAACATCGGTGCGGCCTTCTCCGTTCGGTCTCCACCATCCGGCCACTGCGTCTTCCCCATCAAGAACCTCAAGGACCTCGTCATCTTNTACTACCTTGTCTAGGTCATGGAGCTACTATTATTTGGTGAAGATCGAATGGTGGCAAAGATAGGACAACAATGNATGNAGTTACCATCTTCATTTCTTAAATTTAT GGACAAATC AGATTTT GGGACCT GGGAACTTAGTTT GT GGTTGTACTC AATGTTCT A ] [+] EMBL OS0476A [ GCTCGTCCCGTCGCCCGCCGGCGCGGCA CACCGCATCTGCTCGCGCCGGCGCCTCACGTCGCTTCAGCCTCCTCCTCTCGCCACAAATGACGCCGCCTCCTCTCACCGTAGATGCCGCCTCTCGTCAGATCTGACGGAGCTCAACATCGGTGCGGCCTTCTCCGTTCGGTCTCCACCATCCGGCCACTGCGTCTTCCCCATCAAGAACCTCAAGGACCTCGTCATCTTCTACTACCTTGTCTAGGTCATGGAGCTACTATTATTTGGTGAAGATCGAATGGTGGCAAAGATAGGACAACAATGCATGCAGTTACCATCTTCATTTCTTAAATTTAT GGACAAATC AGATTTT GGGACCT GGGAACTTAGTTT GT GGTTGTACTC AATGTT T AGGTGTTGAT GT CNTTTGC TT NCGATTTT A TTT AACTTACTGTGGNGATG ATAAGAAAAct ] [+] EMBL AU092610 [ GGCGCGGCA CACNGCATCTGCTCGCGCCGGGGCCTCACGTCGCTTCAGCCTCCTCCTCTCGCCACAAATGACGCCGCCTCCTCTCACCGTAGATGCCGCCTCTCGTCAGATCTGACGGAGCTCAACATCGGTGCGGCCTTCTCCGTTCGGTCTCCACCATCCGGCCA TGCGTCTTCCCCATCAAGAACCTCAAGGACCTCGTCATCTTCTACTACCTTGTCTAGGTCATGGAGCTACTATTATTTGGTGAAGATCGAATGGTGGCAAAGATAGGACAACAATGCATGCAGTTACCATCTTCATTTCTTAAATTTAT GGACAAATC AGATTTT GGGACCT GGGAACTTAGTTT GT GGTTGTACTC AATGTTCT AGGTGTTGAT GT CCTTTGC TT CCGATTTT ATTTT ACCTTACTGTGGTGATGTATAAGAAAAACTTCTCAGTGGGCTCTTTGCTAAACACTAAAATTTAAATGCTTGTAATATTGTTTGGAGGGCACAGATTGACTTACCACATGTGAATTTGTCAACTGATACAATGCATAGCAGTGTTAATTATCGTTTTAAAAAA] [+] EMBL C27679 [ cggncnGCANCACCGCATCTGCTCGCGCCGNC CNTCACGTCGCTTCAGCCTCCTCCTCTCGCCACAAATGACGCCGCCTCCTCTCACCGTAGATGCCGCCTCTCGTCAGATCTGACGGAGCTCAACATCGGTGCGGCCTTCTCCGTTCGGTCTCCACCATCCGGCCACTGCGTCTTCCCCATCAAGAACCTCAAGGACCTCGTCATCTTCTACTACCTTGTCTAGGTCATGGAGCTACTATTATTTGGTGAAGATCGAATGGTGGCAAAGATAGGACAACAATGCATGCAGTTACCATCTTCAATTCTTAAATTTATGGGACAAATCAAGATTTTGGGGACCTGGGGAACTTAGTTTNGTGGGTTGTACTCAAATGTTCTNAGGGGTTGATGGTCCCTTNGCTTT CCGATTTTAATTTTAACCTTACTGTGGGGAatg ] [+] EMBL AU223454 [ CGTCAGATCTGACGGAGCTCAACATCGGTGCGGCCTTCTCCGTTCGGTCTCCACCATCCGGCCACTGCGTCTTCCCCATCAAGAACCTCAAGGACCTCGTCATCTTCTACTACCTTGTNTAGGTCATGGAGCTACTATTATTTGGTGAAGATCGAATGGTGGCAAAGATAGGACAACAATGCATGCAGTTACCATCTTCATTTCTTAAATTTAT GGACAAATC AGATTTT GGGACCT GGGAACTTAGTTT GT GGTTGTACTC AATGTTCT AGGTGTTGAT GT CCTTTGC TT CCGATTTT ATTTT ACCTTACTGTGGTGATGTATAAGAAAAACTTCTCAGTGGGCTCTTTGCTAAACACTAAAATTTAAATGCTTGTAATATTGTTTGGAGGGCACAGATTGACTTACCACATGTGAATTTGTCAAaaaaa ] [+] EMBL AU101920 [ GACGGAGCTCAACATCGGTGCGGCCTTCTCCGTTCGGTCTCCACCATCCGGCCA TGCGTCTTCCCCATCAAGAACCTCAAGGACCTCGTCATCTTCTACTACCTTGTCTAGGTCATGGAGCTACTATTATTTGGTGAAGATCGAATGGTGGCAAAGATAGGACAACAATGCATGCAGTTACCATCTTCATTTCTTAAATTTAT GGACAAATC AGATTTT GGGACCT GGGAACTTAGTTT GT GGTTGTACTC AATGTTCT AGGTGTTGAT GT CCTTTGC TT CCGATTTT ATTTT ACCTTACTGTGGTGATGTATAAGAAAAACTTCTCAGTGGGCTCTTTGCTAAACACTAAAATTTAAATGCTTGTAATATTGTTTGGAGGGCACAGATTGACTTACCACATGTGAATTTGTCAACTGATACAATGCATAGCAGTGTTAATTATCGTTTTAAAAA ] [+] EMBL AU101919 [ AGCTCAACATCGGTGCGGCCTTCTCCGTTCGGTCTCCACCATCCGGCCACTGCGTCNTCCCCATCAAGAACCTCAAGGACCTCGTCATCTTCTACTACCTTGTCTAGGTCATGGAGCTACTATTATTTGGTGAAGATCGAATGGTGGCAAAGATAGGACAACAATGCATGCAGTTACCATCTTCATTTCTTAAATTTAT GGACAAATC AGATTTT GGGACCT GGGAACTTAGTTT GT GGTTGTACTC AATGTTCT AGGTGTTGAT GT CCTTTGC TT CCGATTTT ATTTT ACCTTACTGTGGTGATGTATAAGAAAAACTTCTCAGTGGGCTCTTTGCTAAACACTAAAATTTAAATGCTTGT ] [+] EMBL AK060723 [ C AGATTTT GGGACCT GGGAACTTAGTTT GT GGTTGTACTC AATGTTCT AGGTGTTGAT GT CCTTTGC TT CCGATTTT ATTTT ACCTTACTGTGGTGATGTATAAGAAAAACTTCTCAGTGGGCTCTTTGCTAAACACTAAAATTTAAATGCTTGTAATATTGTTTGGAGGGCACAGATT ] [+] EMBL BM037872 [ tgcC TTCCCGATTTT ATTTT ACCTTACTGTGGTGATGTATAAGAAAAACTTCTCAGTGGGCTCTTTGCTAAACACTAAAATTTAAATGCTTGTAATATTGTTTGGAGGGCACAGATTGACTTACCACATGTGAATTTGTCCACTaaaaa ] consensusID : consensus_14048#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 430 fasta sequence [CTCCTCTTCCCCGTAGACCCGCCTCTCGTCAGATCTGACGGAGCTCAACACTCGGTGCGCCCTTTCTCCGTTCGGTCTCCACCATCCGGCCACTGCGTCTTCCCCGTCAAGAACCTCAAGGACCTCGTCATCTTCTACTACCTTGTCTAGGTCATGGAGATCGAATGGTGCCAAAGATAGGACAACCAATGCCATGCCAGTTACCATCTTCATTTCTTAAATTTATGGACCAAATCAGATTTTGGGACCTGGGAACCTTAGTTTGTGTTGTACCTCAATGTTCTAGGTGTTGATGTCCCTTTGCTTCCGATTTTATTTTACCCTTACTGTGGTGATGTATAAGAAAAACTTCTCAGTGGGTTCTTTGCTAAACACTAAAATTTAAATGCTTGTAATATTGTTTGGAGGACACAGATTGACTTACCAAAAA] [+] EMBL BI800299 [CTCCTCTTCCCCGTAGACCCGCCTCTCGTCAGATCTGACGGAGCTCAACACTCGGTGCGCCCTTTCTCCGTTCGGTCTCCACCATCCGGCCACTGCGTCTTCCCCGTCAAGAACCTCAAGGACCTCGTCATCTTCTACTACCTTGTCTAGGTCATGGAGATCGAATGGTGCCAAAGATAGGACAACCAATGCCATGCCAGTTACCATCTTCATTTCTTAAATTTATGGACCAAATCAGATTTTGGGACCTGGGAACCTTAGTTTGTGTTGTACCTCAATGTTCTAGGTGTTGATGTCCCTTTGCTTCCGATTTTATTTTACCCTTACTGTGGTGATGTATAAGAAAAACTTCTCAGTGGGTTCTTTGCTAAACACTAAAATTTAAATGCTTGTAATATTGTTTGGAGGACACAGATTGACTTACCAAAAA] consensusID : consensus_14048#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 428 fasta sequence [AGCGGCGCCCAAGCCGCCGCTGCTCGTCCCGTCGCCCGCCGGCGCGGCACACCGCATCTGCTCGCGCCGGCGCCTCACGTCGCTTCAGCCTCCTCCTCTCGCCACAAATGACGCCGCCTCCTCTCACCGTAGATGCCGCCTCTCGTCAGATCTGACGGAGCTCAACATCGGTGCGGCCTTCTCCGTTCGGTCTCCACCATCCGGCCACTGCGTCTTCCCCATCAAGAACCTCAAGGACCTCGTCATCTTCTACTACCTTGTCTAGGTTGAGGAGCTGGCTGGCTGACAGAAACATAGTACCATGGTCATGGAGCTACTATTATTTGGTGAAGATCGAATGGTGGCAAAGATAGGACAACAATGCATGCAGTTACCATCTTCATTTCTTAAATTTATGGACAAATCAGATTTTGGGACCTGGGAACTTA] [+] EMBL AU065473 [AGCGGCGCCCAAGCCGCCGCTGCTCGTCCCGTCGCCCGCCGGCGCGGCACACCGCATCTGCTCGCGCCGGCGCCTCACGTCGCTTCAGCCTCCTCCTCTCGCCACAAATGACGCCGCCTCCTCTCACCGTAGATGCCGCCTCTCGTCAGATCTGACGGAGCTCAACATCGGTGCGGCCTTCTCCGTTCGGTCTCCACCATCCGGCCACTGCGTCTTCCCCATCAAGAACCTCAAGGACCTCGTCATCTTCTACTACCTTGTCTAGGTTGAGGAGCTGGCTGGCTGACAGAAACATAGTACCATGGTCATGGAGCTACTATTATTTGGTGAAGATCGAATGGTGGCAAAGATAGGACAACAATGCATGCAGTTACCATCTTCATTTCTTAAATTTATGGACAAATCAGATTTTGGGACCTGGGAACTTA] [+] EMBL CA758055 [AGCGGCGCCCAAGCCGCCGCTGCTCGTCCCGTCGCCCGCCGGCGCGGCACACCGCATCTGCTCGCGCCGGCGCCTCACGTCGCTTCAGCCTCCTCCTCTCGCCACAAATGACGCCGCCTCCTCTCACCGTAGATGCCGCCTCTCGTCAGATCTGACGGAGCTCAACATCGGTGCGGCCTTCTCCGTTCGGTCTCCACCATCCGGCCACTGCGTCTTCCCCATCAAGAACCTCAAGG ] consensusID : consensus_14048#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 382 fasta sequence [AGAGGACGAGACAAGGGGGGACCTCGTCATCTTCTACTACCTTGTCTAGGTCATGGAGATCGAATGGTGGCAAAGATAGGACAACAATGCATGCAGTTACCATCTTCATTTCTTAAATTTATGGACAAATCAGATTTTGGGACCTGGGAACTTAGTTTGTGGTTGTACTCAATGTTCTAGGTGTTGATGTCCTTTGCTTCCGATTTTATTTTACCTTACTGTGGTGATGTATAAGAAAAACTTCTCAGTGGGTTCTTTGCTAAACACTAAAATTTAAATGCTTGTAATATTGTTTGGAGGACACAGATTGACTTACCACATGCGAATTTGTCAACTGATACAATGCATAGCAGTGTTAATTATCGTTTTAAAAAAAAAAAAA] [-] EMBL CA761953 [AGAGGACGAGACAAGGGGGGACCTCGTCATCTTCTACTACCTTGTCTAGGTCATGGAGATCGAATGGTGGCAAAGATAGGACAACAATGCATGCAGTTACCATCTTCATTTCTTAAATTTATGGACAAATCAGATTTTGGGACCTGGGAACTTAGTTTGTGGTTGTACTCAATGTTCTAGGTGTTGATGTCCTTTGCTTCCGATTTTATTTTACCTTACTGTGGTGATGTATAAGAAAAACTTCTCAGTGGGTTCTTTGCTAAACACTAAAATTTAAATGCTTGTAATATTGTTTGGAGGACACAGATTGACTTACCACATGCGAATTTGTCAACTGATACAATGCATAGCAGTGTTAATTATCGTTTTAAAAAAAAAAAAA] [+] EMBL CA767082 [ CAGATTTTGGGACCTGGGAACTTAGTTTGTGGTTGTACTCAATGTTCTAGGTGTTGATGTCCTTTGCTTCCGATTTTATTTTACCTTACTGTGGTGATGTATAAGAAAAACTTCTCAGTGGGTTCTTTGCTAAACACTAAAATTTAAATGCTTGTAATATTGTTTGGAGGACACAGATTGACTTACCACATGCGAATTTG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14048#1 ------------------------------------------------------------ consensus_14048#3 ------------------------------------------------------------ consensus_14048#0 CGCCCAAGCCGNCGCTGCTCGTCCCGTCGCCCGCCGGCGCGGCACACCGCATCTGCTCGC 60 consensus_14048#2 ------------------------------------------------------------ consensus_14048#1 ----------------------------------------------------CTCCTCTT 8 consensus_14048#3 ------------------------------------------------------------ consensus_14048#0 GCCGGCGCCTCACGTCGCTTCAGCCTCCTCCTCTCGCCACAAATGACGCCGCCTCCTCTC 120 consensus_14048#2 ------------------------------------------------------------ consensus_14048#1 CCCCGTAGACCCGCCTCTCGTCAGATCTGACGGAGCTCAACACTCGGTGCGCCCTTTCTC 68 consensus_14048#3 ------------------------------------------------------------ consensus_14048#0 ACCGTAGATGCCGCCTCTCGTCAGATCTGACGGAGCTCAACATCGGTGCGGCC--TTCTC 178 consensus_14048#2 ------------------------------------------------------------ consensus_14048#1 CGTTCGGTCTCCACCATCCGGCCACTGCGTCTTCCCCGTCAAGAACCTCAAGGACCTCGT 128 consensus_14048#3 ---------------------------------AGAGGACGAGACAAGGGGGGACCTCGT 27 consensus_14048#0 CGTTCGGTCTCCACCATCCGGCCACTGCGTCTTCCCCATCAAGAACCTCAAGGACCTCGT 238 consensus_14048#2 -----AGCGGCGCCCAAGCCGCCGCTGCTCGTCCCGTCGCCCGCCGGCGCGGCACACCG- 54 * * * ** ** consensus_14048#1 CATCTTCTACTACCT-TGTCT-AGGTCATGGAG-------------------ATCGAATG 167 consensus_14048#3 CATCTTCTACTACCT-TGTCT-AGGTCATGGAG-------------------ATCGAATG 66 consensus_14048#0 CATCTTCTACTACCT-TGTCT-AGGTCATGGAGCTACTATTATTTGGTGAAGATCGAATG 296 consensus_14048#2 CATCTGCTCGCGCCGGCGCCTCACGTCGCTTCAGCC----------------TCCTCCTC 98 ***** ** ** * ** * *** * * consensus_14048#1 GTGCCAAAGATAGGACAACCAATGCCATGCCAGTTACCATCTTCATTTCTTAAATTTATG 227 consensus_14048#3 GTGGCAAAGATAGGACAAC-AATGC-ATGC-AGTTACCATCTTCATTTCTTAAATTTATG 123 consensus_14048#0 GTGGCAAAGATAGGACAAC-AATGC-ATGC-AGTTACCATCTTCATTTCTTAAATTTATG 353 consensus_14048#2 TCGCCACAAATGACGCCGC--CTCCTCTCACCGTAGATGCCGCCTCTCGTCAGATCT--- 153 * ** * ** * * * * * ** * * * * * ** * consensus_14048#1 GACCAAATCAGATTTTGGGACCTGGGAACCTTAGTTTGTG-TTGTACCTCAATGTTCTAG 286 consensus_14048#3 GAC-AAATCAGATTTTGGGACCTGGGAAC-TTAGTTTGTGGTTGTAC-TCAATGTTCTAG 180 consensus_14048#0 GAC-AAATCAGATTTTGGGACCTGGGAAC-TTAGTTTGTGGTTGTAC-TCAATGTTCTAG 410 consensus_14048#2 GACGGAGCTCAACATCGGTGC--GGCCTTCTCCGTTCGGTCTCCACCATCCGGCCACTGC 211 *** * * * ** * ** * *** * * * ** ** consensus_14048#1 GTGTTGATGTCCCTTTGCTTCCGATTTTATTTTACCCTTACTGTGGTGATGTATAAGAAA 346 consensus_14048#3 GTGTTGATGTCC-TTTGCTTCCGATTTTATTTTACC-TTACTGTGGTGATGTATAAGAAA 238 consensus_14048#0 GTGTTGATGTCC-TTTGCTTCCGATTTTATTTTACC-TTACTGTGGTGATGTATAAGAAA 468 consensus_14048#2 GTCTTCCCCATCAAGAACCTCAAGGACCTCGTCATC--TTCTACTACCTTGTCTAGGTTG 269 ** ** * * ** * * * * ** *** ** * consensus_14048#1 AACTTCTCAGTGGGTTCTTTGCTAAACACTAAAATTTAAATGCTTGTAATATTGTTTGGA 406 consensus_14048#3 AACTTCTCAGTGGGTTCTTTGCTAAACACTAAAATTTAAATGCTTGTAATATTGTTTGGA 298 consensus_14048#0 AACTTCTCAGTGGGCTCTTTGCTAAACACTAAAATTTAAATGCTTGTAATATTGTTTGGA 528 consensus_14048#2 AGGAGCT-GGCTGGCTGACAGAAACATAGTACCATGGTCATGGAGCTACTATTATTTGGT 328 * ** * ** * * * * * ** ** *** ** **** ***** consensus_14048#1 GGACACAGATTGACTTACCAAAAA------------------------------------ 430 consensus_14048#3 GGACACAGATTGACTTACCACATGCGAATTTGTCAACTGATACAATGCATAGCAGTGTTA 358 consensus_14048#0 GGGCACAGATTGACTTACCACATGTGAATTTGTCAACTGATACAATGCATAGCAGTGTTA 588 consensus_14048#2 GAAGATCGAATGG--TGGCAAAGATAGGACAA-CAATGCATGCAGTTACCATCTTCATTT 385 * * ** ** * ** * consensus_14048#1 ------------------------------------------- consensus_14048#3 ATTATCGTTTTAAAAAAAAAAAAA------------------- 382 consensus_14048#0 ATTATCGTTTTAAAAAA-------------------------- 605 consensus_14048#2 CTTAAATTTATGGACAAATCAGATTTTGGGACCTGGGAACTTA 428 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||