These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14050#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 1611 fasta sequence [AGGAAGGCGATGATGAAGAAGTGCCCGTCGGAGCTGCAGCTGGAGGCGTTCATCCGGGAGGAGGCCGGCGCCGGCGACCGCAAGCCCGGCGTGTTATCTCCCGGCGACGGCGCGCGTAAGTCCGGCCTGTTCTCTCCCGGCGACGGCGAGATGTCCGTGTTGGATCAGAGTACACTGGACGGAAGCGGCGGCGGCCACCAGCTGTGGTGGCCGGAGAGCGTCCGTACGCCGCCGCGCGCCGCCGCCGCCTTCTCGGCCACGGCCGACGAGCGGACGCCGGCGTCCATCTCCGATGACCCCAAACCAACCACCTCAGCGAACCACGCGCCTGAAAGCGACTCGGACTCCGATTGCGATTCGCTGTTAGAAGCAGAGAGGAGTCCACGCCTGCGTGGCACGAAATCCACAGAAACAAAGCGAATAAGAAGGATGGTGTCCAACAGGGAGTCCGCTCGACGATCCAGGAGGAGAAAGCAGGCACAGTTATCTGAACTCGAATCACAGGTCGAGCAACTCAAAGGCGAAAACTCATCCCTCTTCAAGCAGCTCACAGAGTCCAGCCAGCAGTTCAATACAGCGGTCACGGACAACAGGATCCTCAAATCGGATGTAGAGGCCTTAAGAGTCAAGGTCAAGATGGCTGAAGACATGGTCGCGAGGGCCGCGATGTCGTGTGGCCTGGGCCAGCTCGGGCTGGCGCCATTGCTCAGCTCCAGGAAGATGTGCCAAGCTTTGGATATGCTCAGTTTACCACGGAACGATGCCTGTGGTTTCAAAGGCTTGAACCTGGGTCGACAGGTTCAGAACTCACCGGTTCAAAGCGCTGCAAGCCTAGAGAGCCTGGACA-ACCGGATATCCAGCGAGGTG-ACCAGCTGCTCGGCTGAT-GTGTGGCC-TTA-AGACA-CTTCA-TCCGTGTTCGAGAGAGCTTGAGATTCTAAGAAGCA-GCCGGTGAGAATCT-GAAAAGGCTAGTT-GTT-CAGTTTCCTATTTTTAGTTTAT--GTTTGAATTCTCTGGCTACTAATGCTCAAAATCTGGGAGAGAATCTAAATCGTTTGGGACAGATAAAAAATTATGCGAGAAGGTGTAGCTGACAGAAACCTTCCC-AAAC-AAATCTCCATC-AGAACCTATATGTAAAGTAATACGGTATCCTCTGTTACTAGGTGCATGTGCATAACTGACAAGCTGCTAAGTACTAGGTACTAC-AGTCTGAGGCAAGTATTTCTGGTGTTTTGGTGCTGAAGAACTATGTTTTAGT-GCGTTTGATCTG-CGGC-AATCAAGGCCATCTGATCGAAATTT-GAT-TGGTATAAATCTGATCGAAATTTGATTGGTATAAGTATAATAG-TTTGATTTTGATCAAATCTAGTCGTCAGCGCCTTTGGTGTATACGCTCTGTAACATCTGTTACGAATTGATCTGTTCAGTATACTTCAACAGTCCTGCATTGGTTCAGTTCTTGGCGTAGCTCTGGTGCTTCTGGTGCGCATAGCATCGGTGTGAAATGTGCCACTTTTCATGGCAGTTGTAATAGTAAACGACTGCAAAATTACGGTGTACTATAATTCCTAAACAAATATGTGACAATTACGATGAAAATTATCACTAAGATGTTATTACCAT] [+] EMBL AK065941 [AGGAAGGCGATGATGAAGAAGTGCCCGTCGGAGCTGCAGCTGGAGGCGTTCATCCGGGAGGAGGCCGGCGCCGGCGACCGCAAGCCCGGCGTGTTATCTCCCGGCGACGGCGCGCGTAAGTCCGGCCTGTTCTCTCCCGGCGACGGCGAGATGTCCGTGTTGGATCAGAGTACACTGGACGGAAGCGGCGGCGGCCACCAGCTGTGGTGGCCGGAGAGCGTCCGTACGCCGCCGCGCGCCGCCGCCGCCTTCTCGGCCACGGCCGACGAGCGGACGCCGGCGTCCATCTCCGATGACCCCAAACCAACCACCTCAGCGAACCACGCGCCTGAAAGCGACTCGGACTCCGATTGCGATTCGCTGTTAGAAGCAGAGAGGAGTCCACGCCTGCGTGGCACGAAATCCACAGAAACAAAGCGAATAAGAAGGATGGTGTCCAACAGGGAGTCCGCTCGACGATCCAGGAGGAGAAAGCAGGCACAGTTATCTGAACTCGAATCACAGGTCGAGCAACTCAAAGGCGAAAACTCATCCCTCTTCAAGCAGCTCACAGAGTCCAGCCAGCAGTTCAATACAGCGGTCACGGACAACAGGATCCTCAAATCGGATGTAGAGGCCTTAAGAGTCAAGGTCAAGATGGCTGAAGACATGGTCGCGAGGGCCGCGATGTCGTGTGGCCTGGGCCAGCTCGGGCTGGCGCCATTGCTCAGCTCCAGGAAGATGTGCCAAGCTTTGGATATGCTCAGTTTACCACGGAACGATGCCTGTGGTTTCAAAGGCTTGAACCTGGGTCGACAGGTTCAGAACTCACCGGTTCAAAGCGCTGCAAGCCTAGAGAGCCTGGACA ACTGGATATCCAGCGAGGTG ACCAGCTGCTCGGCTGAT GTGTGGCC TTA AGACA CTTCA TCCGTGTTCGAGAGAGCTTGAGATTCTAAGAAGCA GCCGGTGAGAATCT GAAAAGGCTAGTT GTT CAGTTTCCTATTTTTAGTTTAT GTTTGAATTCTCTGGCTACTAATGCTCAAAATCTGGGAAAGAATCTAAATCGTTTGGGACAGATAAAAAATTATGCGAGAAGGTGTAGCTGACAGAAACCTTCCC AAAC AAATCTCCATC AGAACCTATATGTAAAGTAATACGGTATCCTCTGTTACTAGGTGCATGTGCATAACTGACAAGCTGCTAAGTACTAGGTACTAC AGTCTGAGGCAAGTATTTCTGGTGTTTTGGTGCTGAAGAACTATGTTTTAGT GCGTTTGATCTG CGGC AATCAAGGCCATCTGATCGAAATTT GAT TGGTATAAATCTGATCGAAATTTGATTGGTATAAGTATAATAG TTTGATTTTGATCACCTCTAGTCGTCAGCGCCTTTGGTGTATACGCTCTGTAACATCTGTTACGAATTGATCTGTTCAGTATACTTCAACAGTCCTGCATTGGTTCAGTTCTTGGCGTAGCTCTGGTGCTTCTGGTGCGCATAGCATCGGTGTGAAATGTGCCACTTTTCATGGCAGTTGTAATAGTAAACGACTGCAAAATTACGGTGTACTATAATTCCTAAACAAATATGTGACAATTACGATGAAA ] [+] EMBL AB053474 [ AGGCGATGATGAAGAAGTGCCCGTCGGAGCTGCAGCTGGAGGCGTTCATCCGGGAGGAGGCCGGCGCCGGCGACCGCAAGCCCGGCGTGTTATCTCCCGGCGACGGCGCGCGTAAGTCCGGCCTGTTCTCTCCCGGCGACGGCGAGATGTCCGTGTTGGATCAGAGTACACTGGACGGAAGCGGCGGCGGCCACCAGCTGTGGTGGCCGGAGAGCGTCCGTACGCCGCCGCGCGCCGCCGCCGCCTTCTCGGCCACGGCCGACGAGCGGACGCCGGCGTCCATCTCCGATGACCCCAAACCAACCACCTCAGCGAACCACGCGCCTGAAAGCGACTCGGACTCCGATTGCGATTCGCTGTTAGAAGCAGAGAGGAGTCCACGCCTGCGTGGCACGAAATCCACAGAAACAAAGCGAATAAGAAGGATGGTGTCCAACAGGGAGTCCGCTCGACGATCCAGGAGGAGAAAGCAGGCACAGTTATCTGAACTCGAATCACAGGTCGAGCAACTCAAAGGCGAAAACTCATCCCTCTTCAAGCAGCTCACAGAGTCCAGCCAGCAGTTCAATACAGCGGTCACGGACAACAGGATCCTCAAATCGGATGTAGAGGCCTTAAGAGTCAAGGTCAAGATGGCTGAAGACATGGTCGCGAGGGCCGCGATGTCGTGTGGCCTGGGCCAGCTCGGGCTGGCGCCATTGCTCAGCTCCAGGAAGATGTGCCAAGCTTTGGATATGCTCAGTTTACCACGGAACGATGCCTGTGGTTTCAAAGGCTTGAACCTGGGTCGACAGGTTCAGAACTCACCGGTTCAAAGCGCTGCAAGCCTAGAGAGCCTGGACA ACCGGATATCCAGCGAGGTG ACCAGCTGCTCGGCTGAT GTGTGGCC TTA AGACA CTTCA TCCGTGTTCGAGAGAGCTTGAGATTCTAAGAAGCA GCCGGTGAGAATCT GAAAAGGCTAGTT GTT CAGTTTCCTATTTTTAGTTTAT GTTTGAATTCTCTGGCTACTAATGCTCAAAATCTGGGAGAGAATCTAAATCGTTTGGGACAGATAAAAAATTATGCGAGAAGGTGTAGCTGACAGAAACCTTCCC AAAC AAATCTCCATC AGAACCTATATGTAAAGTAATACGGTATCCTCTGTTACTAGGTGCATGTGCATAACTGACAAGCTGCTAAGTACTAGGTACTAC AGTCTGAGGCAAGTATTTCTGGTGTTTTGGTGCTGAAGAACTATGTTTTAGT GCGTTTGATCTG CGGC AATCAAGGCCATCTGATCGAAATTT GAT TGGTATAAATCTGATCGAAATTTGATTGGTATAAGTATAATAG TTTGATTTTGATCAAAaaaaaaa ] [+] EMBL CB653494 [ TGATGCACTTTTGACCGTCGGAGCTGCAGCTGGAGGCGTTCATCCGGGAGGAGGCCGGCGCCGGCGACCGCAAGCCCGGCGTGTTATCTCCCGGCGACGGCGCGCGTAAGTCCGGCCTGTTCTCTCCCGGCGACGGCGAGATGTCCGTGTTGGATCAAAGTACACTGGACGGAAGCGGCGGCGGCCACCAGCTGTGGTGGCCGGAGAGCGTCCGTACGCCGCCGCGCGCCGCCGCCGCCTTCTCGGCCACTGCCGACGAGCGGACGCCGGCGTCCATCTCCGATGACCCCAAACCAACCACCTCAGCGAACCACGCGCCTGAAAGCGACTCGGACTCCGATTGCGATTCGCTGTTAGAAGCAGAGAGGAGTCCACGCCTGCGTGGCACGAAATCCACAGAAACAAAGCGAATAATAAGGATGGTGTCCAACAGGGAGTCCGCTCGACGATCCATGAGGAGAAAGCAGGCACAGTTATCTGAACTCGAATCACAGGTCGAGCAACTCAAAGGCGAAAACTCATCCCTCTTCAAGCAGCTCACAGAGTCCAGCCAGCAGTTCAATACAGCGGTCACGGACAACAGGATCCTCAAATCGGATGTAGAGGCCTTAAGAGTCAAGGTCAAGATGGCTGAAGACATGGTCGCGAGGGCCGCGATGTCGTGTGGCCTGGGCCCGCTCAGGCTG ] [+] EMBL CB668694 [ GAGGCCTGCGCCGGCGACCGCAAGCCCGGCGTGTTATCTCCCGGCGACGGCGCGCGTAAGTCCGGCCTGTTCTCTCCCGGCGACGGCGAGATGTCCGTGTTGGATCAGAGTACACTGGACGGAAGCGGCGGCGGCCACCAGCTGTGGTGGCCGGAGAGCGTCCGTACGCCGCCGCGCGCCGCCGCCGCCTTCTCGGCCACGGCCGACGAGCGGACGCCGGCGTCCATCTCCGATGACCCCAAACCAACCACCTCAGCGAACCACGCGCCTGAAAGCGACTCGGACTCCGATTGCGATTCGCTGTTAGAAGCAGAGAGGAGTCCACGCCTGCGTGGCACGAAATCCACAGAAACAAAGCGAATAAGAAGGATGGTGTCCAACAGGGAGTCCGCTCGACGATCCAGGAGGAGAAAGCAGGCACAGTTATCTGAACTCGAATCACAGGTCGAGCAACTCAAAGGCGAAAACTCATCCCTCTTCAAGCAGCTCACAGAGTCCAGCCAGCAGTTCAATACAGCGGTCACGGACAACAGGATCCTCAAATCGGATGTAGAGGCCTTAAGAGTCAAGGTCAAGATGGCTGAAGACATGGTCGCGAGGGCCGCGATGTCGTGTGGCCTGGGCCAGCTCGGGCTGGCGCCATTGCTCAGCTCCAGGAAGATGTGCCAAGCTTTGGATATGCTCAGTTTACCACGGAACGATGCCTGTGGTTTC AAGGCTTGAACCTGGGTCGACAGGT ] [-] EMBL CB668695 [ AGCCAGCAGTTCAATACAGCGGTCACGGACAACAGGATCCTCAAATCGGATGTAGAGGCCTTAAGAGTCAAGGTCAAGATGGCTGAAGACATGGTCGCGAGGGCCGCGATGTCGTGTGGCCTGGGCCAGCTCGGGCTGGCGCCATTGCTCAGCTCCAGGAAGATGTGCCAAGCTTTGGATATGCTCAGTTTACCACGGAACGATGCCTGTGGTTTCAAAGGCTTGAACCTGGGTCGACAGGTTCAGAACTCACCGGTTCAAAGCGCTGCAAGCCTAGAGAGCCTGGACA ACCGGATATCCAGCGAGGTG ACCAGCTGCTCGGCTGAT GTGTGGCC TTA AGACA CTTCA TCCGTGTTCGAGAGAGCTTGAGATTCTAAGAAGCA GCCGGTGAGAATCT GAAAAGGCTAGTT GTT CAGTTTCCTATTTTTAGTTTAT GTTTGAATTCTCTGGCTACTAATGCTCAAAATCTGGGAGAGAATCTAAATCGTTTGGGACAGATAAAAAATTATGCGAGAAGGTGTAGCTGACAGAAACCTTCCC AAAC AAATCTCCATC AGAACCTATATGTAAAGTAATACGGTATCCTCTGTTACTAGGTGCATGTGCATAACTGACAAGCTGCTAAGTACTAGGTACTAC AGTCTGAGGCAAGTATTTCTGGTGTTTTGGTGCTGAAGAACTATGTTTTAGT GCGTTTGATCTG CGGC AATCAAGGCCATCTGATCGAAATTT GAT GGGTATAAATCTGATCGAAATTTGATTGGTAAAAAAAAAAAAG a ] [+] EMBL BM037784 [ ATCGGATGTAGA GCCTTAAGAGTCAA GTCAAGAT GCTGAAGACATGGTCGCGAGGCCCGCGAT TCGTGTGGCCT GGCCAGCTC GGCTGGCGCCATTGCTCAGCTCCAGGAAGATGTGCCAAGCTTTGGATATGCTCAGTTTACCACGGAACGATGCCTGTGGTTTCAAAGGCTTGAACCTGGGTCGACAGGTTCAGAACTCACCGGTTCAAAGCGCTGCAAGCCTAGAGAGCCTGGACA ACCGGATATCCAGCGAGGTG ACCAGCTGCTCGGCTGAT GTGT GCC TTA AGACA CTTCA TCCGTGTTCGAGAGAGCTTGAGATTCTAAGAAGCA GCCGGTGAGAATCT GAAAAGGCTAGTT GTT CAGTTTCCTATTTTTAGTTTATNCNCTTGAATTCTCTGGCTACTAATGCTCAAAATCTGGGAGAGAATCTAAATCGTTTGGGACAGATAAAAAATTATGCGAGAAGGTGTAGCTGACAGAAACCTTCCC AAC AATCTCCATC AGAACCTATATGTAAAGTAATACGGTATCCTCTGTT ] [+] EMBL BI812234 [ TGCAAGCCTAGAGAGCCTGGACACACCGGATATCCAGCGAGGTG ACCAGCTGCTC GCTGATGGTGT GCC TTA AGACA CTTCA TCCGTGTTCAAGAGAGCTTGAGATTCTAAGAAGCA GCCGGTGAGAATCT GAAAAGGCTAGTT ATT CAGTTTCCTATTTTTAGTTTAT GTTTGGATTCTCTGGCTACTAATGCTCGAAATCTGGGAGAGAATCTAAATCGTTTGGGACAGATAAAAAATTATGCGAGAAGGTGTAGCTGACAGAAACCTTCCC AAC AATCTCCATC AGAACCTATATGTAAAGTAATACGGTATCCTCTGTTACTAGGTGCATGTGCATAACTGACAAGCTGCTAAGTACTAGGTACTAC AGTCTGAGGCAAGTATTTCTGGTGTTTTGGTGCTGAAGAACTATGTTTTAGT GCGTTTGATCTG CGGC AATCAAGGCCATCTGATCGAAATTT GAT TGGTATAAATCTGATCGAAATTTGATTGGTATAAaaaa ] [+] EMBL BQ908978 [ ccnTAGAGAGCCTGGACC ACCGGATATCCAGCGAGGTGCACCAGCTGCTC GCTGAT GTGT GCC TTA AGACA CTTCA TCCGTGTTCAAGAGAGCTTGAGATTCTAAGAAGCA GCCGGTGAGAATCT GAAAAGGCTAGTT ATT CAGTTTCCTATTTTTAGTTTAT GTTTGGATTCTCTGGCTACTAATGCTCAAAATCTGGGAGAGAATCTAAATCGTTTGGGACAGATAAAAAATTATGCGAGAAGGTGTAGCTGACAGAAACCTTCCC AAC AAATCTCCATC AGAACCTATATGTAAAGTAATACGGTATCCTCTGTTACTAGGTGCATGTGCATAACTGACAAGCTGCTAAGTACTAGGTACTAC AGTCTGAGGCAAGTATTTCTGGTGTTTTGGTGCTGAAGAACTATGTTTTAGT GCGTTTGATCTG CGGC ATCAAGGCCATCTGATCGAAATTT GAT TGGTATAAATCTGATCGAAATTTGATTGGTATAAGTATAATAGCTTTGATTTTGATCAAAaaaaaaa ] [+] EMBL BM038854 [ GAGAGCCTGGACA ACCGGATATCCAGCGAGGTG ACCAGCTGCTCGGCTGATGGTGTGGCC TTA AGACA CTTCA TCCGTGTTCAAGAGAGCTTGAGATTCTAAGAA CACGCCGGTGAGAATCT GAAAAGGCTAGTT ATT CAGTTTCCTATTTTTAGTTTAT GTTTGGATTCTCTGGCTACTAATGCTCCAAATCTGGGAGAGAATCTAAATCGTTTGGGACAGATAAAAAATTATGCGAGAAGGTGTAGCTGACAGAAACCTTCCC CAAC AATCTCCATC AGAACCTATATGTAAAGTAATACGGTATCCTCTGTTACTAGGTGCATGTGCATAACTGACCAGCTGCTAAGTACTAGGTACTAC AGTCTGAGCCAAGTATTTCTGGTGTTTTGGTGCTGAAGAACTATGTTTTAGTGGCGTTTGATCTGCCGCC TATCAA GCCATCTGATCGAAATTTGGATGTGGTATAAATCTGATCGAAATTTGATTGGTATNCGTATAATA TTGGATTTGGACCAAA ] [-] EMBL CB653495 [ ACA ACCGGATATCCAGCGAGGTG ACCAGCTGCTCGGCTGAT GTGTGGCC TTA AGACA CTTCA TCCGTGTTCGAGAGAGCTTGAGATTCTAAGAAGCA GCCGGTGAGAATCT GAAAAGGCTAGTT GTT CAGTTTCCTATTTTTAGTTTAT GTTTGAATTCTCTGGCTACTAATGCTCAAAATCTGGGAGAGAATCTAAATCGTTTGGGACAGATAAAAAATTATGCGAGAAGGTGTAGCTGACAGAAACCTTCCC AAAC AAATCTCCATC AGAACCTATATGTAAAGTAATACGGTATCCTCTGTTACTAGGTGCATGTGCATAACTGACAAGCTGCTAAGTACTAGGTACTAC AGTCTGAGGCAAGTATTTCTGGTGTTTTGGTGCTGAAGAACTATGTTTTAGT GCGTTTGATCTG CGGC AATCAAGGCCATCTGATCGAAATTT GAT TGGTATAAATCTGATCGAAATTTGATTGGTATAAGTATAATAG TTTGATTTTGATCACCTCTAGTCGTCAGCGCCTTTGGTGTATACGCTCTGTAACATCTGTTACGAATTGATCTGTTCAGTATACTTCAACAGTCCTGCATTGGTTCAGTTCTTGGCGTAGCTCTGGTGCTTCTGGTGCGCATAGCATCGGTGTGAAATGTGCCACTTTTCATGGCAGTTGTAATAGTAAACGACTGCAAAATTACGGTGTACTATAATTCCTAAACAAATATGTGACAATTAGGATGAAAATTATCACTAAGATGTTATTACCAT] [+] EMBL BI804052 [ AGCTGCTCGGCTGAT GTGGGCCCTTTAGAGACACCTTCACTCCGTGTTCGAGAGAGCTTGAGATTCTAAGAAGCA CCCGGTGAGAATCTGGAAAAGGCTAGTTAATTCCAGTTTCCTATTTTTAGTTTAT TTTGGATTCTCGGGCTACTAATGCTTAAAATCTGGGAGAGAATCTAAATCGTTTGGGACAGATAAAAAATTATGCGAGAAGGTGTAGCTGACAGAAACCTTCCCAAAACAAAATCTCCATCAAGAACCTATATGTAAAGTAATCCGGTATCCTCTGTTACTAGGTGCATGTGCATAACTGACAAGCTGCTAAGTACTAGGTACTACAAGTCTGAGCCAAGTATTTCTGGTGTTTTGGTGCTGAAGAACTATGTTTTAGT GCGTTTGATCTC CGCCAAATCAAGCCCATCTGATCGAAATTT GAT TGGTATAAATCTGATCGAAAaaaaaaa ] consensusID : consensus_14050#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1381 fasta sequence [AGAAGTGCCCGTCGGAGCTGCAGCTGGAGGCGTTCATCCGGGAGGAGGCCGGCGCCGGCGACCGCAAGCCCGGCGTGTTATCTCCCGGCGACGGCGCGCGTAAGTCCGGCCTGTTCTCTCCCGGCGACGGCGAGATGTCCGTGTTGGATCAGAGTACACTGGACGGAAGCGGCGGCGGCCACCAGCTGTGGTGGCCGGAGAGCGTCCGTACGCCGCCGCGCGCCGCCGCCGCCTTCTCGGCCACGGCCGACGAGCGGACGCCGGCGTCCATCTCCGATGACCCCAAACCAACCACCTCAGCGAACCACGCGCCTGAAAGCGACTCGGACTCCGATTGCGATTCGCTGTTAGAAGCAGAGAGGAGTCCACGCCTGCGTGGCACGAAATCCACAGAAACAAAGCGAATAAGAAGGATGGTGTCCAACAGGGAGTCCGCTCGACGATCCAGGAGGAGAAAGCAGGCACAGTTATCTGAACTCGAATCACAGGTCGAGCAACTCAAAGGCGAAAACTCATCCCTCTTCAAGCAGCTCACAGAGTCCAGCCAGCAGTTCAATACAGCGGTCACGGACAACAGGATCCTCAAATCGGATGTAGAGGCCTTAAGAGTCAAGGTAATTAGAAACCAAACTCTCCTTCAGCCACCAATTATCGGCGCATTTAACTTTTCGCCACTTTTAAGATGAGGTAATTAAGAATTTACCACCCATAGTCTATGACAACATATGGGTCTTTATCACTTTATGTGTCTATGACATGTGAGTCCAATTGCAAATTGTCACTCGTAAGAGTGGTAAATAGTTAATTGTTTCTGATGATCGGCTTCCGGCATCTCTCCAAACTTACCAATTCTTGGCTTCGATCCCAGGTCAAGATGGCTGAAGACATGGTCGCGAGGGCCGCGATGTCGTGTGGCCTGGGCCAGCTCGGGCTGGCGCCATTGCTCAGCTCCAGGAAGATGTGCCAAGCTTTGGATATGCTCAGTTTACCACGGAACGATGCCTGTGGTTTCAAAGGCTTGAACCTGGGTCGACAGGTTCAGAACTCACCGGTTCAAAGCGCTGCAAGCCTAGAGAGCCTGGACAACCGGATATCCAGCGAGGTGACCAGCTGCTCGGCTGATGTGTGGCCTTAAGACACTTCATCCGTGTTCGAGAGAGCTTGAGATTCTAAGAAGCAGCCGGTGAGAATCTGAAAAGGCTAGTTGTTCAGTTTCCTATTTTTAGTTTATGTTTGAATTCTCTGGCTACTAATGCTCAAAATCTGGGAGAGAATCTAAATCGTTTGGGACAGATAAAAAATTATGCGAGAAGGTGTAGCTGACAGAAACCTTCCCAAACAAATCTCCATCAGAACCTATATGTAAAGTAATACGGTATCC] [+] EMBL CB676551 [AGAAGTGCCCGTCGGAGCTGCAGCTGGAGGCGTTCATCCGGGAGGAGGCCGGCGCCGGCGACCGCAAGCCCGGCGTGTTATCTCCCGGCGACGGCGCGCGTAAGTCCGGCCTGTTCTCTCCCGGCGACGGCGAGATGTCCGTGTTGGATCAGAGTACACTGGACGGAAGCGGCGGCGGCCACCAGCTGTGGTGGCCGGAGAGCGTCCGTACGCCGCCGCGCGCCGCCGCCGCCTTCTCGGCCACGGCCGACGAGCGGACGCCGGCGTCCATCTCCGATGACCCCAAACCAACCACCTCAGCGAACCACGCGCCTGAAAGCGACTCGGACTCCGATTGCGATTCGCTGTTAGAAGCAGAGAGGAGTCCACGCCTGCGTGGCACGAAATCCACAGAAACAAAGCGAATAAGAAGGATGGTGTCCAACAGGGAGTCCGCTCGACGATCCAGGAGGAGAAAGCAGGCACAGTTATCTGAACTCGAATCACAGGTCGAGCAACTCAAAGGCGAAAACTCATCCCTCTTCAAGCAGCTCACAGAGTCCAGCCAGCAGTTCAATACAGCGGTCACGGACAACAGGATCCTCAAATCGGATGTAGAGGCCTTAAGAGTCAAGGTAATTAGAAACCAAACTCTCCTTCAGCCACCAATTATCGGCGCATTTAACTTTTCGCCACTTTTAAGATGAGGTAATTAAGAATTTACCACCCATAGTCTATGACAACATATGGGTCTTTATCACTTTATGTGTCTATGACATGTGAGTCCAATTGCAAATTGTCACTCGTAAGAGTGGTAAATAGTTAATTGTTTCTGATGATCGGCTTCCGGCATCTCTCCAAACTTACC ] [-] EMBL CB676552 [ ATTAGAAACCAAACTCTCCTTCAGCCACCAATTATCGGCGCATTTAACTTTTCGCCACTTTTAAGATGAGGTAATTAAGAATTTACCACCCATAGTCTATGACAACATATGGGTCTTTATCACTTTATGTGTCTATGACATGTGAGTCCAATTGCAAATTGTCACTCGTAAGAGTGGTAAATAGTTAATTGTTTCTGATGATCGGCTTCCGGCATCTCTCCAAACTTACCAATTCTTGGCTTCGATCCCAGGTCAAGATGGCTGAAGACATGGTCGCGAGGGCCGCGATGTCGTGTGGCCTGGGCCAGCTCGGGCTGGCGCCATTGCTCAGCTCCAGGAAGATGTGCCAAGCTTTGGATATGCTCAGTTTACCACGGAACGATGCCTGTGGTTTCAAAGGCTTGAACCTGGGTCGACAGGTTCAGAACTCACCGGTTCAAAGCGCTGCAAGCCTAGAGAGCCTGGACAACCGGATATCCAGCGAGGTGACCAGCTGCTCGGCTGATGTGTGGCCTTAAGACACTTCATCCGTGTTCGAGAGAGCTTGAGATTCTAAGAAGCAGCCGGTGAGAATCTGAAAAGGCTAGTTGTTCAGTTTCCTATTTTTAGTTTATGTTTGAATTCTCTGGCTACTAATGCTCAAAATCTGGGAGAGAATCTAAATCGTTTGGGACAGATAAAAAATTATGCGAGAAGGTGTAGCTGACAGAAACCTTCCCAAACAAATCTCCATCAGAACCTATATGTAAAGTAATACGGTATCC] consensusID : consensus_14050#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 595 fasta sequence [GAGTAGAAAACCTTTAAATTAAGCCGCGACGAGCACTGCACGGTGGTCGGAGGAAGGCGATGATGAAGAAGTGCCCGTCGGAGCTGCAGCTGGAGGCGTCCATCTCCGATGACCCCAAACCAACCACCTCAGCGAACCACGCGCCTGAAAGCGACTCGGGCTCCGATTGCGATTCGCTGTTAGAAGCAGAGAGGAGTCCACGCCTGCGTGGCACGAAATCCACAGAAACAAAGCGAATAAGAAGGATGGTGTCCAACAGGGAGTCCGCTCGACGATCCAGGAGGAGAAAGCAGGCACAGTTATCTGAACTCGAATCACAGGTCGAGCAACTCAAAGGCGAAAACTCATCCCTCTTCAAGCAGCTCACAGAGTCCAGCCAGCAGTTCAATACAGCGGTCACGGACAACAGGATCCTCAAATCGGATGTAGAGGCCTTAAGAGTCAAGGTCAAGATGGCTGAAGACATGGTCGCGAGGGCCGCGATGTCGTGTGGCCTGGGCCAGCTCGGGCTGGCGCCATTGCTCAGCTCCAGGAAGATGTGCCAAGCTTTGGATATGCTCAGTTTACCACGGAACGATGCCCTGTGGTTTCAAAG] [+] EMBL CF334964 [GAGTAGAAAACCTTTAAATTAAGCCGCGACGAGCACTGCACGGTGGTCGGAGGAAGGCGATGATGAAGAAGTGCCCGTCGGAGCTGCAGCTGGAGGCGTCCATCTCCGATGACCCCAAACCAACCACCTCAGCGAACCACGCGCCTGAAAGCGACTCGGGCTCCGATTGCGATTCGCTGTTAGAAGCAGAGAGGAGTCCACGCCTGCGTGGCACGAAATCCACAGAAACAAAGCGAATAAGAAGGATGGTGTCCAACAGGGAGTCCGCTCGACGATCCAGGAGGAGAAAGCAGGCACAGTTATCTGAACTCGAATCACAGGTCGAGCAACTCAAAGGCGAAAACTCATCCCTCTTCAAGCAGCTCACAGAGTCCAGCCAGCAGTTCAATACAGCGGTCACGGACAACAGGATCCTCAAATCGGATGTAGAGGCCTTAAGAGTCAAGGTCAAGATGGCTGAAGACATGGTCGCGAGGGCCGCGATGTCGTGTGGCCTGGGCCAGCTCGGGCTGGCGCCATTGCTCAGCTCCAGGAAGATGTGCCAAGCTTTGGATATGCTCAGTTTACCACGGAACGATGCCCTGTGGTTTCAAAG] consensusID : consensus_14050#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 224 fasta sequence [AACTCACCGGTTCAAAGCGCTGCAAGCCTAGAGAGCCTGGACAACCGGATATCAGCGAGGTGACCAGCTGCTCGGCTGATGTGTGGCCTTAAGACACTTCACCCGTGTTCGAGAGAGCTTGAGATTCTAAGAAGCAGCCGGTGAGAATCTGAAAAGGCTAGTTGTAAAGTAATGCTCAATCCGTGTCCGTGTCCGTGTCCGTGTACTTCATCAGTTTCCTATTT] [+] EMBL AA751441 [AACTCACCGGTTCAAAGCGCTGCAAGCCTAGAGAGCCTGGACAACCGGATATCAGCGAGGTGACCAGCTGCTCGGCTGATGTGTGGCCTTAAGACACTTCACCCGTGTTCGAGAGAGCTTGAGATTCTAAGAAGCAGCCGGTGAGAATCTGAAAAGGCTAGTTGTAAAGTAATGCTCAATCCGTGTCCGTGTCCGTGTCCGTGTACTTCATCAGTTTCCTATTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14050#1 AGAAGTGCCCGTCGGAGCTGCAGCTGGAGGCGTTCATCCGGGAGGAGGCCGGCGCCGGCG 60 consensus_14050#3 ------------------------------------------------------------ consensus_14050#0 ------------------------------------------------------------ consensus_14050#2 ------------------------------------------------------------ consensus_14050#1 ACCGCAAGCCCGGCGTGTTATCTCCCGGCGACGGCGCGCGTAAGTCCGGCCTGTTCTCTC 120 consensus_14050#3 ------------------------------------------------------------ consensus_14050#0 ------------------------------------------------------------ consensus_14050#2 ------------------------------------------------------------ consensus_14050#1 CCGGCGACGGCGAGATGTCCGTGTTGGATCAGAGTACACTGGACGGAAGCGGCGGCGGCC 180 consensus_14050#3 ------------------------------------------------------------ consensus_14050#0 ------------------------------------------------------------ consensus_14050#2 ------------------------------------------------------------ consensus_14050#1 ACCAGCTGTGGTGGCCGGAGAGCGTCCGTACGCCGCCGCGCGCCGCCGCCGCCTTCTCGG 240 consensus_14050#3 ------------------------------------------------------------ consensus_14050#0 -----------------------------------------------------AGGAAGG 7 consensus_14050#2 ------------------------------------------------------------ consensus_14050#1 CCACGGCCGACGAGCGGACGCCGGCGTCCATCTCCGATGACCCCAAACCAACCACCTCAG 300 consensus_14050#3 ------------------------------------------------------------ consensus_14050#0 CGATGATGAAGAAGTGCCCGTCGGAGCTGCAGCTGGAGGCGTTCATCCGGGAGGAGGCCG 67 consensus_14050#2 ------------------------------------------------------------ consensus_14050#1 CGAACCACGCGCCTGAAAGCGACTCGGACTCCGATTGCGATTCGCTGTTAGAAGCAGAGA 360 consensus_14050#3 ------------------------------------------------------------ consensus_14050#0 GCGCCGGCGACCGCAAGCCCGGCGTGTTATCTCCCGGCGACGGCGCGCGTAAGTCCGGCC 127 consensus_14050#2 ------------------------------------------------------------ consensus_14050#1 GGAGTCCACGCCTGCGTGGCACGAAATCCACAGAAACAAAGCGAATAAGAAGGATGGTGT 420 consensus_14050#3 ------------------------------------------------------------ consensus_14050#0 TGTTCTCTCCCGGCGACGGCGAGATGTCCGTGTTGGATCAGAGTACACTGGACGGAAGCG 187 consensus_14050#2 ------------------------------------------------------------ consensus_14050#1 CCAACAGGGAGTCCGCTCGACGATCCAGGAGGAGAAAGCAGGCACAGTTATCTGAACTCG 480 consensus_14050#3 ------------------------------------------------------------ consensus_14050#0 GCGGCGGCCACCAGCTGTGGTGGCCGGAGAGCGTCCGTACGCCGCCGCGCGCCGCCGCCG 247 consensus_14050#2 ------------------------------------------------------------ consensus_14050#1 AATCACAGGTCGAGCAACTCAAAGGCGAAAACTCATCCCTCTTCAAGCAGCTCACAGAGT 540 consensus_14050#3 ------------------------------------------------------------ consensus_14050#0 CCTTCTCGGCCACGGCCGACGAGCGGACGCCGGCGTCCATCTCCGATGACCCCAAACCAA 307 consensus_14050#2 ------------------------------------------------------------ consensus_14050#1 CCAGCCAGCAGTTCAATACAGCGGTCACGGACAACAGGATCCTCAAATCGGATGTAGAGG 600 consensus_14050#3 ------------------------------------------------------------ consensus_14050#0 CCACCTCAGCGAACCACGCGCCTGAAAGCGACTCGGACTCC-----GATTGCGATTCGCT 362 consensus_14050#2 ------------------------------------------------------------ consensus_14050#1 CCTTAAGAGTCAAGGTAATTAGAAACCAAACTCTCCTTCAGCCACCAATTATCGGCGCAT 660 consensus_14050#3 ------------------------------------------------------------ consensus_14050#0 GTTAGAAGCAGAGAGGAGTCCACGCCTGCGTGGCACGAAATCCACAGAAACAAAGCGAAT 422 consensus_14050#2 ------------------------------------------------------------ consensus_14050#1 TTAACTTTTCGCCACTTTTAAGATGAGGTAATTAAGAATTTACCACCCATAGTCTATGAC 720 consensus_14050#3 ------------------------------------------------------------ consensus_14050#0 AAGAAGGATGGTGTCCAACAGGGAGTCCGCTCGACGATCCAGGAGGAGAAAGCAGGCACA 482 consensus_14050#2 ------------------------------------------------------------ consensus_14050#1 AACATATGGGTCTTTATCACTTTATGTGTCTATGACATGTGAGTCCAATTGCAAATTGTC 780 consensus_14050#3 ------------------------------------------------------------ consensus_14050#0 GTTATCTGAACTCGAATCACAGGTCGAGCAACTCAAAGGCGAAAACTCATCCCTCTTCAA 542 consensus_14050#2 -----------GAGTAGAAAACCTTTAAATTAAGCCGCGACGAGCACTGCACGGTGGTCG 49 consensus_14050#1 ACTCGTAAGAGTGGTAAATAGTTAATTGTTTCTGATGATCGGCTTCCGGCATCTCTCCAA 840 consensus_14050#3 ------------------------------------------------------------ consensus_14050#0 GCAGCTCACAGAGTCCAGCCAGCAGTTCAATACAGCGGTCACGGACAACAGGATCCTCAA 602 consensus_14050#2 GAGGAAGGCGATGATGAAGAAGTGCCCGTCGGAGCTGCAGCTGGAGGCGTCCATCTCCGA 109 consensus_14050#1 ACTTACCAATTCTTGGCTTCGATCCCAGGTCAAGATGGCTGAAGACATGGTCGCGAGGGC 900 consensus_14050#3 ------------------------------------------------------------ consensus_14050#0 ATCGGATGTAGAGGCCTTAAGAGTCAAGGTCAAGATGGCTGAAGACATGGTCGCGAGGGC 662 consensus_14050#2 TGACCCCAAACCAACCACCTCAGCGAACCACGCGCCTGAAAGCGACTCGGGCTCCGATTG 169 consensus_14050#1 CGCGATGTCGTGTGGCCTGGGCCAGCTCGGGCTGGCGCCATTGCTCAGCTCCAGGAAGAT 960 consensus_14050#3 ------------------------------------------------------------ consensus_14050#0 CGCGATGTCGTGTGGCCTGGGCCAGCTCGGGCTGGCGCCATTGCTCAGCTCCAGGAAGAT 722 consensus_14050#2 CGATTCGCTGTTAGAAGCAGAGAGGAGTCCACGCCTGCGTGGCACGAAATCCACAGAAAC 229 consensus_14050#1 GTGCCAAGCTTTGGATATGCTCAGTTTACCACGGAACGATGCCTGTGGTTTCAAAGGCTT 1020 consensus_14050#3 ------------------------------------------------------------ consensus_14050#0 GTGCCAAGCTTTGGATATGCTCAGTTTACCACGGAACGATGCCTGTGGTTTCAAAGGCTT 782 consensus_14050#2 AAAGCGAATAAGAAGGATGGTGTCCAACAGGGAGTCCGCTCGACGATCCAGGAGGAGAAA 289 consensus_14050#1 GAACCTGGGTCGACAGGTTCAGAACTCACCGGTTCAAAGCGCTGCAAGCCTAGAGAGCCT 1080 consensus_14050#3 ----------------------AACTCACCGGTTCAAAGCGCTGCAAGCCTAGAGAGCCT 38 consensus_14050#0 GAACCTGGGTCGACAGGTTCAGAACTCACCGGTTCAAAGCGCTGCAAGCCTAGAGAGCCT 842 consensus_14050#2 GCAGGCACAGTTATCTGAACTCGAATCACAGGT-CGAGCAACTCAAAGGCGAAAACTCAT 348 * **** *** * * ** *** * * * * * consensus_14050#1 GGACAACCGGATATCCAGCGAGGT--GACCAGCTGCTCGGCTGATGTGT----GGCCTTA 1134 consensus_14050#3 GGACAACCGGATATC-AGCGAGGT--GACCAGCTGCTCGGCTGATGTGT----GGCCTTA 91 consensus_14050#0 GGACAACCGGATATCCAGCGAGGT--GACCAGCTGCTCGGCTGATGTGT----GGCCTTA 896 consensus_14050#2 CCCTCTTCAAGCAGCTCACAGAGTCCAGCCAGCAGTTCAATACAGCGGTCACGGACAACA 408 * * * * ** ***** * ** * ** * * * consensus_14050#1 AGACACTTCATCCGTGTTCGAGAGAGCTTGAGATTCTAAGAAGCAGCCGGTGAGAATCTG 1194 consensus_14050#3 AGACACTTCACCCGTGTTCGAGAGAGCTTGAGATTCTAAGAAGCAGCCGGTGAGAATCTG 151 consensus_14050#0 AGACACTTCATCCGTGTTCGAGAGAGCTTGAGATTCTAAGAAGCAGCCGGTGAGAATCTG 956 consensus_14050#2 GGATCCTCAAATCG-GATGTAGAGGCCTTAAGAGTCAAGGTCAAGATGGCTGAAGACATG 467 ** ** * ** * * **** *** *** ** * * * *** * ** consensus_14050#1 A----AAAGGCTA----GTTGTTCAGT--TTCCTATTTTTAGTTTATGTTTGAATTCTCT 1244 consensus_14050#3 A----AAAGGCTA----GTTGTAAAGTAATGCTCAATCCGTGTCCGTGTCCGTGTCCGTG 203 consensus_14050#0 A----AAAGGCTA----GTTGTTCAGT--TTCCTATTTTTAGTTTATGTTTGAATTCTCT 1006 consensus_14050#2 GTCGCGAGGGCCGCGATGTCGTGTGGCCTGGGCCAGCTCGGGCTGGCGCCATTGCTCAGC 527 * *** ** ** * * * * * consensus_14050#1 GGCTACTAATGCTCAAAATCTGGGAGAGAATCTAAATCGTTTGGGACAGATAAAAAATTA 1304 consensus_14050#3 TACTTCATCAGTTTCCTATTT--------------------------------------- 224 consensus_14050#0 GGCTACTAATGCTCAAAATCTGGGAGAGAATCTAAATCGTTTGGGACAGATAAAAAATTA 1066 consensus_14050#2 TCCAGGAAGATGTGCCAAGCTTTGGATATGCTCAGTTTACCACGGAACGATGCCCTGTGG 587 * * * * consensus_14050#1 TGCGAGAAGGTGTAGCTGACAGAAACCTTCCCAAACAAATCTCCATCAGAACCTATATGT 1364 consensus_14050#3 ------------------------------------------------------------ consensus_14050#0 TGCGAGAAGGTGTAGCTGACAGAAACCTTCCCAAACAAATCTCCATCAGAACCTATATGT 1126 consensus_14050#2 TTTCAAAG---------------------------------------------------- 595 consensus_14050#1 AAAGTAATACGGTATCC------------------------------------------- 1381 consensus_14050#3 ------------------------------------------------------------ consensus_14050#0 AAAGTAATACGGTATCCTCTGTTACTAGGTGCATGTGCATAACTGACAAGCTGCTAAGTA 1186 consensus_14050#2 ------------------------------------------------------------ consensus_14050#1 ------------------------------------------------------------ consensus_14050#3 ------------------------------------------------------------ consensus_14050#0 CTAGGTACTACAGTCTGAGGCAAGTATTTCTGGTGTTTTGGTGCTGAAGAACTATGTTTT 1246 consensus_14050#2 ------------------------------------------------------------ consensus_14050#1 ------------------------------------------------------------ consensus_14050#3 ------------------------------------------------------------ consensus_14050#0 AGTGCGTTTGATCTGCGGCAATCAAGGCCATCTGATCGAAATTTGATTGGTATAAATCTG 1306 consensus_14050#2 ------------------------------------------------------------ consensus_14050#1 ------------------------------------------------------------ consensus_14050#3 ------------------------------------------------------------ consensus_14050#0 ATCGAAATTTGATTGGTATAAGTATAATAGTTTGATTTTGATCAAATCTAGTCGTCAGCG 1366 consensus_14050#2 ------------------------------------------------------------ consensus_14050#1 ------------------------------------------------------------ consensus_14050#3 ------------------------------------------------------------ consensus_14050#0 CCTTTGGTGTATACGCTCTGTAACATCTGTTACGAATTGATCTGTTCAGTATACTTCAAC 1426 consensus_14050#2 ------------------------------------------------------------ consensus_14050#1 ------------------------------------------------------------ consensus_14050#3 ------------------------------------------------------------ consensus_14050#0 AGTCCTGCATTGGTTCAGTTCTTGGCGTAGCTCTGGTGCTTCTGGTGCGCATAGCATCGG 1486 consensus_14050#2 ------------------------------------------------------------ consensus_14050#1 ------------------------------------------------------------ consensus_14050#3 ------------------------------------------------------------ consensus_14050#0 TGTGAAATGTGCCACTTTTCATGGCAGTTGTAATAGTAAACGACTGCAAAATTACGGTGT 1546 consensus_14050#2 ------------------------------------------------------------ consensus_14050#1 ------------------------------------------------------------ consensus_14050#3 ------------------------------------------------------------ consensus_14050#0 ACTATAATTCCTAAACAAATATGTGACAATTACGATGAAAATTATCACTAAGATGTTATT 1606 consensus_14050#2 ------------------------------------------------------------ consensus_14050#1 ----- consensus_14050#3 ----- consensus_14050#0 ACCAT 1611 consensus_14050#2 ----- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||