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Oryza sativa
cluster # 14058 cluster # 14058       Sequences # 15       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_14058#0 length = 1103 sequences # 8  
consensus_14058#1 length = 960 sequences # 3  
consensus_14058#2 length = 713 sequences # 3  
consensus_14058#3 length = 578 sequences # 1  

consensusID : consensus_14058#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 1103
fasta sequence
                              [GCGACGGAGCTGGAGGTGAGCGGCGGGGGGGAAGTGGAGGAGGAGGACGCCGCGGTGGAGGAGGCGTCGTACGGGTGGTTCGGCGCCGGCGCGGATGGCGCCGGGGTGAGGGCGGACTGGCTCGCCGCGTACCGGGCGCGCGCCGCGCCGGCGCTCGCCGGGCTCCGCCGCAACTCCGCCGACTTCTCCGCCGTCGAGACCGCGGCCTTCCTCCGCGCCTGTGG-CCTCTGCAACCGCCGCCTCGGCCCCGGCCGCGACACCTTCATGTACA-AGGGCGACACGGCGTTCTGCAGCCTGGAGTGCAGGCAACAGCACATCACGCACGAGGAGTGGAAGGAGAAGCGCGCCCTCGCCATCGCCAC-GGCGGCGGCGGCGCCGCCGCAACCGCCGCCGTCCATGCCGGACCCGACGGCCGCCGGCTCCGACAACCCCGCCGGAGGCAC-GCTCGCCGC-GGCCTGACGAGGCC-GCCCACATCGACATAGCTGCTGCTGCTGCTATAAAATTGCTACTCGCACCAACACAACGATGACGACGTCGAACA-AACTGTGCAGCTGCTGTATTTACGTCTCCGTAATATCGATGGCGGATGAT-CGCCTCATGCTTATATTACGCCTACTTCCAATCTTTCA-CTCGCATGCTAGCTTCCTCCA-TGGATTTTGATCATCTCGGCCTTCCATTTCGTCTTCCTCTTTTTTTTTTTCGATTATGGAATTTAATCCTTCATCTATGAACTGAG-CATCCTTTAGAAATTTTTGTCAGCCAT-TTAATTATTATTACCCGCTTCCTTCAATAATCGTCCATTTCTTCTTGCCA-AGAT-CAGTATAGGATTCTCTCGCCTTTACACACTGTCTTAGACAAAT-TTCAAATCACATAAAATTATTTCGACGATGTGGTTTGATTGTTATGTCATCATGCATGCTACTGGAAGCGTCTAACATAAATCGATGAATTTAAATGAGTGAAGGTTTTAATACTTTTTATTTGATTTTTTTTGGACAGAAAAGATC-ACGGAATGAAATTAGCAC-ATTTCTATAAGTCC-AAACCACTTATTTTTTGTAATATCATGGTATATTAATTAGAAAC-AAATTTTAATAAAAAAAAAA]

[+] EMBL AK099936             [GCGACGGAGCTGGAGGTGAGCGGCGGGGGGGAAGTGGAGGAGGAGGACGCCGCGGTGGAGGAGGCGTCGTACGGGTGGTTCGGCGCCGGCGCGGATGGCGCCGGGGTGAGGGCGGACTGGCTCGCCGCGTACCGGGCGCGCGCCGCGCCGGCGCTCGCCGGGCTCCGCCGCAACTCCGCCGACTTCTCCGCCGTCGAGACCGCGGCCTTCCTCCGCGCCTGTGG CCTCTGCAACCGCCGCCTCGGCCCCGGCCGCGACACCTTCATGTACA AGGGCGACACGGCGTTCTGCAGCCTGGAGTGCAGGCAACAGCACATCACGCACGAGGAGTGGAAGGAGAAGCGCGCCCTCGCCATCGCCAC GGCGGCGGCGGCGCCGCCGCAACCGCCGCCGTCCATGCCGGACCCGACGGCCGCCGGCTCCGACAACCCCGCCGGAGGCAC GCTCGCCGC GGCCTGACGAGGCC GCCCACATCGACATAGCTGCTGCTGCTGCTATAAAATTGCTACTCGCACCAACACAACGATGACGACGTCGAACA AACTGTGCAGCTGCTGAATTTAAGTCTCCGTAATATCGATGGCGGATGAT CGCCTCATGCTTGTATTACGCTTACTTCCAATCTTTCA CTCGCATGCTAGCTTCCTCCA TGGATTTTGATCATCTCGGCCTTCCATTTCGTCTTCCTC  TTTTTTTTTCGATAATGGAATTTAATCCTTCATCTATGAACTGA                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CA758719             [GCGACGGAGCTGGAGGTGAGCGGCGGGGGGGAAGTGGAGGAGGAGGACGCCGCGGTGGAGGAGGCGTCGTACGGGTGGTTCGGCGCCGGCGCGGATGGCGCCGGGGTGAGGGCGGACTGGCTCGCCGCGTACCGGGCGCGCGCCGCGCCGGCGCTCGCCGGGCTCCGCCGCAACTCCGCCGACTTCTCCGCCGTCGAGACCGCGGCCTTCCTCCGCGCCTGTGG CCTCTGCAACCGCCGCCTCGGCCCCGGCCGCGACACCTTCATGTACA AGGGCGACACGGCGTTCTGCAGCCTGGAGTGCAGGCAACAGCACATCACGCACGAGGAGTGGAAGGAGAAGCGCGCCCTCGCCATCGCCACGGGNGGNGGNGGNGCCGCCGCAACCGCCGCCGTCCATGCCGGACCCGACGGCCGCCGGCTCCGACAACCCCGCCGGGAGCAC GCTCGCCGC GGCCTGACCAAGCC GCCCACATCGACCTTACTGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CF196945             [                                                                                                                                                                                                              CTTCCTCCGCGCCTGTGG CCTCTGCAACCGCCGCCTCGGCCCCGGCCGCGACACCTTCATGTACA AGGGCGACACGGCGTTCTGCAGCCTGGAGTGCAGGCAACAGCACATCACGCACGAGGAGTGGAAGGAGAAGCGCGCCCTCGCCATCGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL BI809590             [                                                                                                                                                                                                                           TGTGGCCCTCTGCAACC CCGCCTCGGCCCC GCCGCGACACCTTCATGTACACAGGGCGACACGGCGTTCT CAGCCTGGAGT CAGGCAACAGCACATCACGCACGAGGAGTGGAAGGAGAAGCGCGCCCTCGCCATCGCCAC GGCGGCGGCGGCGCCGCCGCAACCGCCGCCGTCCATGCCGGACCCGACGGCCGCCGGCTCCGACAACCCCGCCGGAGGCAC GCTCGCCGC GGCCTGACGAGGCC GCCCACATCGACATAGCTGCTGCTGCTGCTATAAAATTGCTACTCGCACCAACACAACGATGACGACGTCGAACACAACTGTGCAGCTGCTGTATTTACGTCTCCGTAATATCGATGGCGGATGAT CGCCTCATGCTTATATTACGCCTACTTCC ATCTTTCA CTCGCATGCTAGCTTCCTCCA TGGATTTTGATCATCTCGGCCTTCCAaaaa                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL BI809233             [                                                                                                                                                                                                                                                                                                                                                                                                      CCGCCGTCCATGCCGGACCCGACGGCCGCCGGCTCCGACAACCCCGCCGGAGGAACAGCTCCCAGCAGGCCTGACGAGGCCAGCCCACATCGACATAGCTGCTGCTGCTGCTATAAAATTGCTACTCGCACC ACACAACGATGACGACGTCGAACA AACTGTGCAGCTGCTGTATTTACGTCTCCGTAATATCGATGGCGGATGAT CGCCTCATGCTTATATTACGCCTACTTCCAATCTTTCA CTCGCATGCTAGCTTCCTCCA TGGATTTTGATCATCTCGGCCTTCCATTTCGTCTTCCTCTTTTTTTTTTTCGATTATGGAATTTAATCCTTCATCTATGAACTGAGCCATCCTTTAGAAATTTTTGTCAGCCAT TTAATTATTATTACTCGCTTCCTTCAAAAA                                                                                                                                                                                                                                                                                                                             ]
[-] EMBL OS39588              [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               TCGACATAGCTGCTGCTGCTGCTANAAAATTGCTACTCGCACCAACACAACGATGACGACGTCGAACA AACTGTGCAGCTGCTGTATTTACGTCTCCGTAATATCGATGGCGGATGAT CGCCTCATGCTTATATTACGCCTACTTCCAATCTTTCACCTCGCATGCTAGCTTCCTCCA TGGATTTTGATCATCTCGGCCTTCCATTTCGTCTTCCTCTTTTTTTTTTTCGATTATGGAATTTAATCCTTCATCTATGAACTGAG CATCCTTTAGAAA TTTTGTCAGCCAT TTAATTATTATTAC                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL BI809114             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          CGTCTCCGTAATAT GATGCCGGATGATCCCCCTCATG TTATATTACGCCTACTTCCAATCTTTCA CTCGCATGCTAGCTTCCTCCACTGGATTTTGATCATCTCGCCCTTCCATTTCGTCTTCCTCTTTTTTTTTTTCGATTATGGAATTTAATCCTTCATCTATGAACTGAC CATCCTTTAGAAATTTTTGTCAGCCAT TTAATTATTATTACCCGCTTCCTTCAATAATCGTCCATTTCTTCTTGCCACAGAT CAGTATAGGATTCTCTCGCCTTTACACACTGTCTTAGACAAAT TTCAAATCACATAAAATTATTTCGACGATGTGGTTTGATTGTTATGTCATCATGCATGCTACTGGAAGCGTCTAACATAAATCGATGAATTTAAATGAGTGAAGGTTTTAATACTTTTTATTTGATTTTTTTTGGACAGAAAAGATC ACGGAATGAAATTAGCAC ATTTCTATAAGTCC AAACCACTTATTTTTTGTAATATCATGGTATATTAATTAGAAAC AAATTTTAATAAAAAAAAAA]
[+] EMBL BI808708             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     GGATTTTGATCATCTC GCCTTCCATTTCGTCTTCCTCTTTGTTTTTTTCGATTATGGAATTTAATCCTTCATCTATGAACTGAGCCATCCTTTAGAAATTTTTGTCAGCCATGTTAATTATTATTACCCGCTTCCTTCAATAATCGTCCATTTCTTCTTGCCA AGATGCAGTATAGGATTCTCTCGCCTTTACACACTGTCTTAGACAAATGTTCAAATCACATAAAATTATTTCGACGATGTGGTTTGATTGTTATGTCATCATGCATGCTACTGGAAGCGTCTAACATAAATCGATGAATTTAAATGAGTGAAGGTTTTAATACTTTTTATTTGATTTTTTTTGGACAGAAAAGATCAACGGAATGAAATTAGCACAATTTCTATAAGTCCAAAACCACTTATTTTTTGTAATATCATGGTATATTAATTAGAAACAAAATTTTAATAAAAAAAAAA]


>consensus_14058#0 GCGACGGAGCTGGAGGTGAGCGGCGGGGGGGAAGTGGAGGAGGAGGACGCCGCGGTGGAG GAGGCGTCGTACGGGTGGTTCGGCGCCGGCGCGGATGGCGCCGGGGTGAGGGCGGACTGG CTCGCCGCGTACCGGGCGCGCGCCGCGCCGGCGCTCGCCGGGCTCCGCCGCAACTCCGCC GACTTCTCCGCCGTCGAGACCGCGGCCTTCCTCCGCGCCTGTGGCCTCTGCAACCGCCGC CTCGGCCCCGGCCGCGACACCTTCATGTACAAGGGCGACACGGCGTTCTGCAGCCTGGAG TGCAGGCAACAGCACATCACGCACGAGGAGTGGAAGGAGAAGCGCGCCCTCGCCATCGCC ACGGCGGCGGCGGCGCCGCCGCAACCGCCGCCGTCCATGCCGGACCCGACGGCCGCCGGC TCCGACAACCCCGCCGGAGGCACGCTCGCCGCGGCCTGACGAGGCCGCCCACATCGACAT AGCTGCTGCTGCTGCTATAAAATTGCTACTCGCACCAACACAACGATGACGACGTCGAAC AAACTGTGCAGCTGCTGTATTTACGTCTCCGTAATATCGATGGCGGATGATCGCCTCATG CTTATATTACGCCTACTTCCAATCTTTCACTCGCATGCTAGCTTCCTCCATGGATTTTGA TCATCTCGGCCTTCCATTTCGTCTTCCTCTTTTTTTTTTTCGATTATGGAATTTAATCCT TCATCTATGAACTGAGCATCCTTTAGAAATTTTTGTCAGCCATTTAATTATTATTACCCG CTTCCTTCAATAATCGTCCATTTCTTCTTGCCAAGATCAGTATAGGATTCTCTCGCCTTT ACACACTGTCTTAGACAAATTTCAAATCACATAAAATTATTTCGACGATGTGGTTTGATT GTTATGTCATCATGCATGCTACTGGAAGCGTCTAACATAAATCGATGAATTTAAATGAGT GAAGGTTTTAATACTTTTTATTTGATTTTTTTTGGACAGAAAAGATCACGGAATGAAATT AGCACATTTCTATAAGTCCAAACCACTTATTTTTTGTAATATCATGGTATATTAATTAGA AACAAATTTTAATAAAAAAAAAA



consensusID : consensus_14058#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 960
fasta sequence
                              [TCGCCGCGCGCCCGCACGCTCGCCGTCGCCGGCCGCCGCCTCGTCGTCGTCGTCGGAGAAGGAGGAGGAGGAGGCCGTCTCTCTGCGTTCTGGCTGCTCGCCTGCGTGGTGGTGATGATGGTGGGCAAGAGGGGGAGGGGAGGGAGCAAGAATAACCCGATGAGGCGGACGACGAGCAGCACATGACGCAGGAGGAGTGGCAGGACAAGTGCGGGGTGACGTCCATGAAGAAGGAGGCGCCGGCGCCGCCCAACGGCCGCCGCCGCTCCAGCAAGACCACCACCAGCGGCGGCACGGTGGCGGCGGCATGATCGATCGATAGCCACCACAGCCTCTAGCTACCTAGCAAGAACGCCGAGCTCATCAGCATCACACACCTAAGTATACTACAAGCTACAACCACCATGCACACGGCTCAATTACGACGACGACGACGACGACGAAGAAAGCAAAGCAAGAATCGATTATTAATCCACCATTATTGTATGGTTCGATCGATCGATCCATCGATCTGCCTTTAGAGAGATACCATTAGTTTTGATCAATCCATGTATGTATCACCTGATCAGTACTT-GGATCGATCGAGATGTTAATTAGTTGCAGAGTTCTTGCCGATCAGTGATGATGGGTTGATAAATTGATTAATTGATCGATCATATATAATGTTGTGGGGAATCTATGGCCTCCTGGAACAGAGGAATTTCATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTTTTTTCCCCTTCCTAAAAAAAGGGGAAAATTTTTAAAACCCGGAAAAAAAACCCCTTAAAGGGGGGAAAAATTAAAACTGGGGAAAAAAAAGGAAAAAAATTTTCCCGGGGAAAAAATGGAACCCCCAAAAAATTCCAAAAAAAAAAAAAACC]

[+] EMBL AK063310             [TCGCCGCGCGCCCGCACGCTCGCCGTCGCCGGCCGCCGCCTCGTCGTCGTCGTCGGAGAAGGAGGAGGAGGAGGCCGTCTCTCTGCGTTCTGGCTGCTCGCCTGCGTGGTGGTGATGATGGTGGGCAAGAGGGGGAGGGGAGGGAGCAAGAATAACCCGATGAGGCGGACGACGAGCAGCACATGACGCAGGAGGAGTGGCAGGACAAGTGCGGGGTGACGTCCATGAAGAAGGAGGCGCCGGCGCCGCCCAACGGCCGCCGCCGCTCCAGCAAGACCACCACCAGCGGCGGCACGGTGGCGGCGGCATGATCGATCGATAGCCACCACAGCCTCTAGCTACCTAGCAAGAACGCCGAGCTCATCAGCATCACACACCTAAGTATACTACAAGCTACAACCACCATGCACACGGCTCAATTACGACGACGACGACGACGACGAAGAAAGCAAAGCAAGAATCGATTATTAATCCACCATTATTGTATGGTTCGATCGATCGATCCATCGATCTGCCTTTAGAGAGATACCATTAGTTTTGATCAATCCATGTATGTATCACCTGATCAGTACTT GGATCGATCGAGATGTTAATTAGTTGCAGAGTTCTTGCCGATCAGTGATGATGGGTTGATAAATTGATTAATTGATCGATCATATATAATGTTGTGGGGAATCTATGGCCTCCTGGAACAGAGGA                                                                                                                                                                                                                                                                     ]
[+] EMBL AU057246             [                                                                                                                                                                              AGCAGCACATGACGCA GAGGAGTGGCAGGACAAGTGCGGGGTGACGTCCATGAAGAAGGAGGCGCCGGCGCCGCCCAACGGCCGCCGCCGCTCCAGCAAGACCACCACCAGCGGCGGCACGGTGGCGGCGGCATGATCGATCGATAGCCACCACAGCCTCTAGCTACCTAGCAAGAACGCCGAGCTCATCAGCATCACACACCTAAGTATACTACAAGCTACAACCACCATGCACACGGCTCAATTACGACGACGACGACGACGACGAAGAAAGCAAAGCAAGAATCGATTATTAATCCACCATTATTGTATGGTTCGATCGATCGATCCATCGATCTGCCTTTAGAGAGATACCATTAGTTTTGATCAATCCATGTATGTATCACCTGATCAGTACTTGGGATCGATCGAGATGTTAATTAGTTGCAGAGTTCTTGCCGATCAGTGATGATGG                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL CF334614             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                CTTGCCGATCAGTGATGATGGGTTGATAAATTGATTAATTGATCGATCATATATAATGTTGTGGGGAATCTATGGCCTCCTGGAACAGAGGAATTTCATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTTTTTTCCCCTTCCTAAAAAAAGGGGAAAATTTTTAAAACCCGGAAAAAAAACCCCTTAAAGGGGGGAAAAATTAAAACTGGGGAAAAAAAAGGAAAAAAATTTTCCCGGGGAAAAAATGGAACCCCCAAAAAATTCCAAAAAAAAAAAAAACC]


>consensus_14058#1 TCGCCGCGCGCCCGCACGCTCGCCGTCGCCGGCCGCCGCCTCGTCGTCGTCGTCGGAGAA GGAGGAGGAGGAGGCCGTCTCTCTGCGTTCTGGCTGCTCGCCTGCGTGGTGGTGATGATG GTGGGCAAGAGGGGGAGGGGAGGGAGCAAGAATAACCCGATGAGGCGGACGACGAGCAGC ACATGACGCAGGAGGAGTGGCAGGACAAGTGCGGGGTGACGTCCATGAAGAAGGAGGCGC CGGCGCCGCCCAACGGCCGCCGCCGCTCCAGCAAGACCACCACCAGCGGCGGCACGGTGG CGGCGGCATGATCGATCGATAGCCACCACAGCCTCTAGCTACCTAGCAAGAACGCCGAGC TCATCAGCATCACACACCTAAGTATACTACAAGCTACAACCACCATGCACACGGCTCAAT TACGACGACGACGACGACGACGAAGAAAGCAAAGCAAGAATCGATTATTAATCCACCATT ATTGTATGGTTCGATCGATCGATCCATCGATCTGCCTTTAGAGAGATACCATTAGTTTTG ATCAATCCATGTATGTATCACCTGATCAGTACTTGGATCGATCGAGATGTTAATTAGTTG CAGAGTTCTTGCCGATCAGTGATGATGGGTTGATAAATTGATTAATTGATCGATCATATA TAATGTTGTGGGGAATCTATGGCCTCCTGGAACAGAGGAATTTCATAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAACCCCTTTTTTCCCCTTCCTAAAAAAAGGGGAAAATTTT TAAAACCCGGAAAAAAAACCCCTTAAAGGGGGGAAAAATTAAAACTGGGGAAAAAAAAGG AAAAAAATTTTCCCGGGGAAAAAATGGAACCCCCAAAAAATTCCAAAAAAAAAAAAAACC



consensusID : consensus_14058#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 713
fasta sequence
                              [CGCCGGGGCAGGACTGGCTGGCGGCGTACCGCGCGCGCGCCGCGCCGGCGAGGGCGGGGCTGAGGCGGAACTCCGCCGACTACTGCTCCGTCGAGACCGCCTCGTTCCTCCGCTCCTGCGGCCTCTGCCGCCGCCGCCTCGGCCCCGGCCGCGACACCTTCATGTACAAGGGAGAGGCGGCGTTCTGCAGCCTGGAGTGCAGGCAGCAGCACATGACGCAGGAGGAGTGGCAGGACAAGTGCGGGGTGACGTCCATGAAGAAGGAGGCGCCGGCGCCGCCCAACGGCCGCCGCCGCTCCAGCAAGACCACCACCAGCGGCGGCACGGTGGCGGCGGCATGATCGATCGATAGCCACCACAGCCTCTAGCTACCTAGCAAGAACGCCGAGCTCATCAGCATCACACACCTAAGTATACTACAAGCTACAACCACCATGCACACGGCTCAATTACGACGACGACGACGACGACGAAGAAAGCAAAGCAAGAATCGATTATTAATCCACCATTATTGTATGGTTCGATCGATCGATCCATCGATCTGCCTTTAGAGAGATACCATTAGTTTTGATCAATCCATGTATGTATCACCTGATCAGTACTTGGATCGATCGAGATGTTAATTAGTTGCAGAGTTCTTGCCGATCAGTGTTAAAGGGTTGATAAATTGATTAATTGATCGATCAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AK061601             [CGCCGGGGCAGGACTGGCTGGCGGCGTACCGCGCGCGCGCCGCGCCGGCGAGGGCGGGGCTGAGGCGGAACTCCGCCGACTACTGCTCCGTCGAGACCGCCTCGTTCCTCCGCTCCTGCGGCCTCTGCCGCCGCCGCCTCGGCCCCGGCCGCGACACCTTCATGTACAAGGGAGAGGCGGCGTTCTGCAGCCTGGAGTGCAGGCAGCAGCACATGACGCAGGAGGAGTGGCAGGACAAGTGCGGGGTGACGTCCATGAAGAAGGAGGCGCCGGCGCCGCCCAACGGCCGCCGCCGCTCCAGCAAGACCACCACCAGCGGCGGCACGGTGGCGGCGGCATGATCGATCGATAGCCACCACAGCCTCTAGCTACCTAGCAAGAACGCCGAGCTCATCAGCATCACACACCTAAGTATACTACAAGCTACAACCACCATGCACACGGCTCAATTACGACGACGACGACGACGACGAAGAAAGCAAAGCAAGAATCGATTATTAATCCACCATTATTGTATGGTTCGATCGATCGATCCATCGATCTGCCTTTAGAGAGATACCATTAGTTTTGATCAATCCATGTATGTATCACCTGATCAGTACTTGGATCGATCGAGATGTTAATTAGTTGCAGAGTT                                                                            ]
[-] EMBL CB653155             [              TGGCTGGCGGCGTACCGCGCGCGCGCCGCGCCGGGGAGGGCGGGGCTGAGGCGGAACTCCGCCGACTACTGCTCCGTCGAGACCGCCTCGTTCCTCCGCTCCTGCGGCCTTTGCCGCCGCCGCCTCGGCCCCGGCCGCGACACCTTCATGTACAAGGGAGAGGCGGCGTTCTGCAGCCTGGAGTGCAGGCAGCAGCACATGACGCAGGAGGAGTGGCAGGACAAGTGCGGGGTGACGTCCATGAAGAAGGAGGCGCCGGCGCCGCCCAACGGCCGCCGCCGCTCCAGCAAGACCACCACCAGCGGCGGCACGGTGGCGGCGGCATGATCGATCGATAGCCACCACAGCCTCTAGCTACCTAGCAAGAACGCCGAGCTCATCAGCATCACACACCTAAGTATACTACAAGCTACAACCACCATGCACACGGCTCAATTACGACGACGACGACGACGACGAAGAAAGCAAAGCAAGAATCGATTATTAATCCACCATTATTGTATGGTTCGATCGATCGATCCATCGATCTGCCTTTAGAGAGATACCATTAGTTTTGATCAATCCATGTATGTATCACCTGATCAGTACTTGGATCGATCGAGATGTTAATTAGTTGCAGAGTTCTTGCCGATCAGTGTTAAAGGGTTGATAAATTGATTAATT                                    ]
[+] EMBL AU057247             [                                                                                                                                                                                                                                                                         GGCGCCGGCGCCGCCCAACGGCCGCCGCCGCTCCAGCAAGACCACCACCAGCGGCGGCNCGGTGGCGGCGGCATGATCGATCGATAGCCACCACAGCCTCTAGCTACCTAGCAAGAACGCCGAGCTCATCAGCATCACACACCTAAGTATACTACAAGCTACAACCNCCATGCACACGGCTCAATTACGACGACGACGACGACGACGAAGAAAGCAAAGCAAGAATCGATTATTAATCCACCATTATTGTATGGTTCGATCGATCGATCCATCGATCTGCCTTTAGAGAGATACCATTAGTTTTGATCAATCCATGTATGTATCACCTGATCAGTACTTGGATCGATCGAGATGTTAATTAGTTGCAGAGTTNTTGCCGATCAGTGATGATGGGTTGATAAATTGATTAATTGATCGATCAAAAAAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_14058#2 CGCCGGGGCAGGACTGGCTGGCGGCGTACCGCGCGCGCGCCGCGCCGGCGAGGGCGGGGC TGAGGCGGAACTCCGCCGACTACTGCTCCGTCGAGACCGCCTCGTTCCTCCGCTCCTGCG GCCTCTGCCGCCGCCGCCTCGGCCCCGGCCGCGACACCTTCATGTACAAGGGAGAGGCGG CGTTCTGCAGCCTGGAGTGCAGGCAGCAGCACATGACGCAGGAGGAGTGGCAGGACAAGT GCGGGGTGACGTCCATGAAGAAGGAGGCGCCGGCGCCGCCCAACGGCCGCCGCCGCTCCA GCAAGACCACCACCAGCGGCGGCACGGTGGCGGCGGCATGATCGATCGATAGCCACCACA GCCTCTAGCTACCTAGCAAGAACGCCGAGCTCATCAGCATCACACACCTAAGTATACTAC AAGCTACAACCACCATGCACACGGCTCAATTACGACGACGACGACGACGACGAAGAAAGC AAAGCAAGAATCGATTATTAATCCACCATTATTGTATGGTTCGATCGATCGATCCATCGA TCTGCCTTTAGAGAGATACCATTAGTTTTGATCAATCCATGTATGTATCACCTGATCAGT ACTTGGATCGATCGAGATGTTAATTAGTTGCAGAGTTCTTGCCGATCAGTGTTAAAGGGT TGATAAATTGATTAATTGATCGATCAAAAAAAAAAAAAAAAAAAAAAAAAAAA



consensusID : consensus_14058#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 578
fasta sequence
                              [CAGCCTGGAGTGCAGGCAGCAGCACATGACGCAGGAGGAGTGGCAGGACAAGTGCGGGGTGACGTCCATGAAGAAGGAGGCGCCGGCGCCGCCCAACGGCCGCCGCCGCTCCAGCAAGACCACCACCAGCGGCGGCACGGTGGCGGCGGCATGATCGATCGATAGCCACCACAGCCTCTAGCTACCTAGCAAGAACGCCGAGCTCATCAGCATCACACACCTAAGTATACTACAAGCTACAACCACCATGCACACGGCTCAATTACGACGACGACGACGACGACGAAGAAAGCAAAGCAAGAATCGATTATGAATCCACCATTATTGTATGGTTCGATCGATCGATCCATCGATCTGCCTTTAGAGAGATACCATTAGTTTTGATCAATCCATGTATGTATCACCTGATCAGTACTTGGATCGATCGAGATGTGAATNAGTNGCAGAGTNCGTGGCCGATCAGTGATGATGGGTNGATACATGATNANTCGATCGATCTATATAATGGTGTGGGGAATCATGGGCTCTGCAACGACGACTNNCTATGACTNGTGAGATCGACTNTNTTTGACAAGAGC]

[+] EMBL CA753023             [CAGCCTGGAGTGCAGGCAGCAGCACATGACGCAGGAGGAGTGGCAGGACAAGTGCGGGGTGACGTCCATGAAGAAGGAGGCGCCGGCGCCGCCCAACGGCCGCCGCCGCTCCAGCAAGACCACCACCAGCGGCGGCACGGTGGCGGCGGCATGATCGATCGATAGCCACCACAGCCTCTAGCTACCTAGCAAGAACGCCGAGCTCATCAGCATCACACACCTAAGTATACTACAAGCTACAACCACCATGCACACGGCTCAATTACGACGACGACGACGACGACGAAGAAAGCAAAGCAAGAATCGATTATGAATCCACCATTATTGTATGGTTCGATCGATCGATCCATCGATCTGCCTTTAGAGAGATACCATTAGTTTTGATCAATCCATGTATGTATCACCTGATCAGTACTTGGATCGATCGAGATGTGAATNAGTNGCAGAGTNCGTGGCCGATCAGTGATGATGGGTNGATACATGATNANTCGATCGATCTATATAATGGTGTGGGGAATCATGGGCTCTGCAACGACGACTNNCTATGACTNGTGAGATCGACTNTNTTTGACAAGAGC]


>consensus_14058#3 CAGCCTGGAGTGCAGGCAGCAGCACATGACGCAGGAGGAGTGGCAGGACAAGTGCGGGGT GACGTCCATGAAGAAGGAGGCGCCGGCGCCGCCCAACGGCCGCCGCCGCTCCAGCAAGAC CACCACCAGCGGCGGCACGGTGGCGGCGGCATGATCGATCGATAGCCACCACAGCCTCTA GCTACCTAGCAAGAACGCCGAGCTCATCAGCATCACACACCTAAGTATACTACAAGCTAC AACCACCATGCACACGGCTCAATTACGACGACGACGACGACGACGAAGAAAGCAAAGCAA GAATCGATTATGAATCCACCATTATTGTATGGTTCGATCGATCGATCCATCGATCTGCCT TTAGAGAGATACCATTAGTTTTGATCAATCCATGTATGTATCACCTGATCAGTACTTGGA TCGATCGAGATGTGAATNAGTNGCAGAGTNCGTGGCCGATCAGTGATGATGGGTNGATAC ATGATNANTCGATCGATCTATATAATGGTGTGGGGAATCATGGGCTCTGCAACGACGACT NNCTATGACTNGTGAGATCGACTNTNTTTGACAAGAGC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_14058#1      ------------------------------------------------------------
consensus_14058#3      ------------------------------------------------------------
consensus_14058#2      ------------------------------------------------------------
consensus_14058#0      GCGACGGAGCTGGAGGTGAGCGGCGGGGGGGAAGTGGAGGAGGAGGACGCCGCGGTGGAG 60
                                                                                   

consensus_14058#1      ------------------------------------------------------------
consensus_14058#3      ------------------------------------------------------------
consensus_14058#2      -------------------------------------------CGCCGGGGCAGGACTGG 17
consensus_14058#0      GAGGCGTCGTACGGGTGGTTCGGCGCCGGCGCGGATGGCGCCGGGGTGAGGGCGGACTGG 120
                                                                                   

consensus_14058#1      --------TCGCCGCGCGCCCGC-ACGCTCGCCGTCGCCGGCCGCCGCCTCGTCGTCGTC 51
consensus_14058#3      ------------------------------------------------------------
consensus_14058#2      CTGGCGGCGTACCGCGCGCGCGCCGCGCCGGCGAGGGCGGGGCTGAGGCGGAACTCCGCC 77
consensus_14058#0      CTCGCCGCGTACCGGGCGCGCGCCGCGCCGGCGCTCGCCGGGCTCCGCCGCAACTCCGCC 180
                                                                                   

consensus_14058#1      GTCGGAGAAGGAGGAGGAGGAGGCCGTCTCTCTGCGTTCTGGCTGCT-----CGCCTGCG 106
consensus_14058#3      ------------------------------------------------------------
consensus_14058#2      GACT-ACTGCTCCGTCGAGACCGCCTCGTTCCTCCGCTCCTGCGGCCTCTGCCGCCGCCG 136
consensus_14058#0      GACT-TCTCCGCCGTCGAGACCGCGGCCTTCCTCCGCGCCTGTGGCCTCTGCAACCGCCG 239
                                                                                   

consensus_14058#1      TGGTGGTGATGATGGTGGGCAAGAGGGGGAGGGGAGGGAGCAAGAATAACCCGATGAGGC 166
consensus_14058#3      ---------------------------------------------------CAGCCTGGA 9
consensus_14058#2      CCTCGGCCCCGGCCGCGACACCTTCATGTACAAGGGAGAGGCGGCGTTCTGCAGCCTGGA 196
consensus_14058#0      CCTCGGCCCCGGCCGCGACACCTTCATGTACAAGGGCGACACGGCGTTCTGCAGCCTGGA 299
                                                                          *     ** 

consensus_14058#1      GGACGACGAGCAGCACATGACGCAGGAGGAGTGGCAGGACAAGTGCGGGGTGACGTCCAT 226
consensus_14058#3      GTGCAGGCAGCAGCACATGACGCAGGAGGAGTGGCAGGACAAGTGCGGGGTGACGTCCAT 69
consensus_14058#2      GTGCAGGCAGCAGCACATGACGCAGGAGGAGTGGCAGGACAAGTGCGGGGTGACGTCCAT 256
consensus_14058#0      GTGCAGGCAACAGCACATCACGCACGAGGAGTGGAAGGAGAAGCGCGCCCTCGC---CAT 356
                       *  *    * ******** ***** ********* **** *** ***   *  *   ***

consensus_14058#1      GAAGAAGGAGGCGCCGGCGCCGCC-CAACGGCCGCCG-CCGCTCCAG-CAAGACCACCAC 283
consensus_14058#3      GAAGAAGGAGGCGCCGGCGCCGCC-CAACGGCCGCCG-CCGCTCCAG-CAAGACCACCAC 126
consensus_14058#2      GAAGAAGGAGGCGCCGGCGCCGCC-CAACGGCCGCCG-CCGCTCCAG-CAAGACCACCAC 313
consensus_14058#0      CGCCACGGCGGCGGCGGCGCCGCCGCAACCGCCGCCGTCCATGCCGGACCCGACGGCCGC 416
                           * ** **** ********** **** ******* **   ** * *  ***  ** *

consensus_14058#1      CAGCGGCGGCA-CGGTGGCGGCGGCATGATCG--ATCGATAGCCACCACAGCCTCTAGCT 340
consensus_14058#3      CAGCGGCGGCA-CGGTGGCGGCGGCATGATCG--ATCGATAGCCACCACAGCCTCTAGCT 183
consensus_14058#2      CAGCGGCGGCA-CGGTGGCGGCGGCATGATCG--ATCGATAGCCACCACAGCCTCTAGCT 370
consensus_14058#0      CGGCTCCGACAACCCCGCCGGAGGCACGCTCGCCGCGGCCTGACGAGGCCGCCCACATCG 476
                       * **  ** ** *   * *** **** * ***     *   * *    * ***   * * 

consensus_14058#1      ACCTAGCAAGAACGCCGAGCTCATCAGCATCACACACCTAAGTATACTACAAGCTACAAC 400
consensus_14058#3      ACCTAGCAAGAACGCCGAGCTCATCAGCATCACACACCTAAGTATACTACAAGCTACAAC 243
consensus_14058#2      ACCTAGCAAGAACGCCGAGCTCATCAGCATCACACACCTAAGTATACTACAAGCTACAAC 430
consensus_14058#0      ACATAGCTGCTGCTGCTGCTATAAAATTGCTACTCGCACCAACACAACGATGACGACGTC 536
                       ** ****     *  *      *  *     ** * *   *  * *       * **  *

consensus_14058#1      CACCA-----TGCACACGGCTCAATTACGACGACG--ACGACGACGACGAAGAAAGCAAA 453
consensus_14058#3      CACCA-----TGCACACGGCTCAATTACGACGACG--ACGACGACGACGAAGAAAGCAAA 296
consensus_14058#2      CACCA-----TGCACACGGCTCAATTACGACGACG--ACGACGACGACGAAGAAAGCAAA 483
consensus_14058#0      GAACAAACTGTGCAGCTGCTGTATTTACGTCTCCGTAATATCGATGGCGGATGAT-CGCC 595
                        * **     ****   *    * ***** *  **  *   *** * ** *  *  *   

consensus_14058#1      GCAAGAATCGATTATTAAT-CCACCATTATTGTA-TGGTTCGATCGATCGATCCATCGAT 511
consensus_14058#3      GCAAGAATCGATTATGAAT-CCACCATTATTGTA-TGGTTCGATCGATCGATCCATCGAT 354
consensus_14058#2      GCAAGAATCGATTATTAAT-CCACCATTATTGTA-TGGTTCGATCGATCGATCCATCGAT 541
consensus_14058#0      TCATGCTTATATTACGCCTACTTCCAATCTTTCACTCGCATGCTAGCTTCCTCCATGGAT 655
                        ** *  *  ****    * *  *** * **  * * *   * * * *   ***** ***

consensus_14058#1      CT--GCCTTTAGAGAGATACCATTAGTTTTGATCAATCCATGTATGTATCACCTGATCAG 569
consensus_14058#3      CT--GCCTTTAGAGAGATACCATTAGTTTTGATCAATCCATGTATGTATCACCTGATCAG 412
consensus_14058#2      CT--GCCTTTAGAGAGATACCATTAGTTTTGATCAATCCATGTATGTATCACCTGATCAG 599
consensus_14058#0      TTTGATCATCTCGGCCTTCCATTTCGTCTTCCTCTTTTTTTTTTTCGATTATGGAATTTA 715
                        *    * *    *   * *  ** ** **  **  *   * * *  ** *    **   

consensus_14058#1      TACTTGGATCGATCGAGATGTTAATTAGTTGCAGAGTTCT--TG-CCGATCAGTGATGAT 626
consensus_14058#3      TACTTGGATCGATCGAGATGTGAATNAGTNGCAGAGTNCG--TGGCCGATCAGTGATGAT 470
consensus_14058#2      TACTTGGATCGATCGAGATGTTAATTAGTTGCAGAGTTCT--TG-CCGATCAGTGTTAAA 656
consensus_14058#0      ATCCTTCATCTAT-GAACTGAGCATCCTTTAGAAATTTTTGTCAGCCATTTAATTATTAT 774
                         * *  *** ** **  **   **   *   * * *        **  * * *  * * 

consensus_14058#1      GGGTTGATAAATTGATTAATTGATCGATCATATATAATGTTGTGGGGAATCTATGGCCTC 686
consensus_14058#3      GGGTNGATACAT-GATNANTCGATCGATC-TATATAATGGTGTGGGGAATC-ATGGGCTC 527
consensus_14058#2      GGGTTGATAAATTGATTAATTGATCGATCAAAAAAAAAAAAAAAAAAAAAAAAAAAA--- 713
consensus_14058#0      TACCCGCTTCCTTCAATAATCGTCCATTT---CTTCTTGCCAAGATCAGTATAGGATTCT 831
                            * *   *  *  * * *  *  *                   *    *       

consensus_14058#1      CTGGAACAGAGGAATTTCATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 746
consensus_14058#3      -TGCAACGACGACTNNCTATGACTNGTGAGATCGACTNTNTTTGACAAGAGC-------- 578
consensus_14058#2      ------------------------------------------------------------
consensus_14058#0      CTCGCCTTTACACACTGTCTTAGACAAATTTCAAATCACATAAAATTATTTCGACGATGT 891
                                                                                   

consensus_14058#1      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCC 806
consensus_14058#3      ------------------------------------------------------------
consensus_14058#2      ------------------------------------------------------------
consensus_14058#0      GGTTTGATTGTTATGTCATCATGCATGCTACTGGAAGCGTCTAACATAAATCGATGAATT 951
                                                                                   

consensus_14058#1      TTTTTTCCCCTTCCTAAAAAAAGGGGAAAATTTTTAAAACCCGGAAAAAAAACCCCTTAA 866
consensus_14058#3      ------------------------------------------------------------
consensus_14058#2      ------------------------------------------------------------
consensus_14058#0      TAAATGAGTGAAGGTTTTAATACTTTTTATTTGATTTTTTTTGGACAGAAAAGATCACGG 1011
                                                                                   

consensus_14058#1      AGGGGGGAAAAATTAAAACTGGGGAAAAAAAAGGAAAAAAATTTTCCCGGGGAAAAAATG 926
consensus_14058#3      ------------------------------------------------------------
consensus_14058#2      ------------------------------------------------------------
consensus_14058#0      AATGAAATTAGCACATTTCTATAAGTCCAAACCACTTATTTTTTGTAATATCATGGTATA 1071
                                                                                   

consensus_14058#1      GAACCCCCAAAAAATTCCAAAAAAAAAAAAAACC 960
consensus_14058#3      ----------------------------------
consensus_14058#2      ----------------------------------
consensus_14058#0      TTAATTAGAAACAAATTTTAATAAAAAAAAAA-- 1103
                                                         




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)