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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14063#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 1938 fasta sequence
[CCGTCTGTCTCTGCCCCACCCACGCATACTAGGAAGGCAGGGGAGACGAGGAGCCAGAGCCAAGTCAAGCCGCTTCCTCTCCTCTCGTCTCGGCGCCTCACTCGATCTCCTTCCTCCACTGTCGCTCAGATCGACGCGGGCCATGGCCAAGCCTAGGGCCTCCGCCGCCGCGGCGAAGGCGCCAGCCTCCACGCCGCCCAAGACGGTGCACTCGGCGCTCGTCACCTACGCCTCCATGCTCTCCCTCCTCTCCCTCTGCCCGCCCTTCGTCATCCTCCTGTGGTACACGATGGTGCACGCGGACGGATCCGTGGTGCGGGCGTACGAGCACCTCCGCGAGCACGGGGTGCTGGAGGGGCTCAAGGCCATCTGGCCCATGCCAACCATGGCCGCCTGGAAGATCATCTTCGGCTTCGGCCTCTTCGAGGCCGCGCTGCAGCTTCTCCTCCCCGGGAAGCGCTTCGAGGGCCCCGTCTCCCCCTCGGGCAACGTGCCCGTCTACAAGGCAAATGGCTTACAAGCATATGCAGTGACCTTGATAACATACCTGAGCCTGTGGTGGTTTGGAATTTTTAACCCTGCAATAGTATACGATCACTTGGGGGAAATATACTCTGCTCTTGTATTTGGAAGCTTTGTGTTCTGTATTTTTCTGTACATAAAGGGTCATCTTGCTCCATCTTCATCTGATTCTGGATCCTCAGGGAATGTGATAATTGATTTCTACTGGGGAATGGAACTATATCCTCGCATTGGTAAGCACTTTGATATCAAAGTGTTCACAAACTGCCGTTTTGGGATGATGTCCTGGGCTGTTCTTGCTGTAACCTACTGCATAAAGCAGTATGAAATGAATGGCCGAGTTGCAGATTCAATGCTTGTGAATACTGCATTGATGTTGATCTATGTCACCAAGTTCTTCTGGTGGGAATCTGGATACTGGTGCACTATGGACATTGCTCATGATAGAGCTGGTTTCTACATTTGCTGGGGATGCTTGGTATGGGTTCCATCAATATACACCTCTCCTGGAATGTACCTTGTCAACCACCCTGTGAATTTGGGTCCCCAGCTAGCACTCTCAATTCTCCTTGCTGGAATATTGTGCATATATATAAACTATGACTGTGATCGTCAGCGCCA--AATTCCGTCGGACAAATGGGAAATGCTCAATATGGGGCAAAGCTCCATCTAAGATTGTTGCTTCCTATCAGACTACAAATGGAGAAACAAAAAGCAGTCTTCTCTTGACTTCTGGATGGTGGGGCTTGTCTCGTCATTTTCACTATGTTCCAGAGATTCTATCTGC-TTTTTTCTGGA-CAGTTCCAGCTCTTTTTGATCATTTCCTGCCGTAC-TTCT-ATGTGATCTTTCTGA-CCA-TATTGC-TGTTCGA-CCGAGC-TAAAA-GGGA-TGATGA-CCGA-T-GCTCATC-AAAGTATGGC--AAGTA-TTGGAAGATGTACTGCAACAAAGTACCGTG-CA-GGGTTATTCCTGGCA-TTTACTGAGGTTGTTGA-CCATGTTCAACAAC--TTCTC--GGGATAAAACTCAGCC-ATG--TT-GTGAATTCCTTTCTC-TGGGACGATCTACTGCTGTTTGT-GTAATA-TGTCATT-AGCTT-GATGTATGCA-GGA-TTA-GATTCGGGCTGATT-GGTTTC-AACCTTTT-GAGTTTGCTGTATCCAACCCTGACACAGATGAGTCAACGATGCCGCCAAATCGTGATTTTTCTTGTTAGCTCGCTGATAGGAGAGATGATTGCAGGATCATAGTTTGTGTAGTTTGTACCTTATAATGGATGTTTCGACTTCATTTTTCTGCTAGAAGCGATTAGGCAGCACGAAAATGAAATTGTTTGAGGTTCTGTACTGCTCGAATAATGTTACTGCAACTGTATTATCCA-TGAACTGTAATAATTCAAAGTTTGGCAACAGG-CATGGTGATTGGTTCTAAAAAAAAAAAAAA]
[+] EMBL AK100199 [CCGTCTGTCTCTGCCCCACCCACGCATACTAGGAAGGCAGGGGAGACGAGGAGCCAGAGCCAAGTCAAGCCGCTTCCTCTCCTCTCGTCTCGGCGCCTCACTCGATCTCCTTCCTCCACTGTCGCTCAGATCGACGCGGGCCATGGCCAAGCCTAGGGCCTCCGCCGCCGCGGCGAAGGCGCCAGCCTCCACGCCGCCCAAGACGGTGCACTCGGCGCTCGTCACCTACGCCTCCATGCTCTCCCTCCTCTCCCTCTGCCCGCCCTTCGTCATCCTCCTGTGGTACACGATGGTGCACGCGGACGGATCCGTGGTGCGGGCGTACGAGCACCTCCGCGAGCACGGGGTGCTGGAGGGGCTCAAGGCCATCTGGCCCATGCCAACCATGGCCGCCTGGAAGATCATCTTCGGCTTCGGCCTCTTCGAGGCCGCGCTGCAGCTTCTCCTCCCCGGGAAGCGCTTCGAGGGCCCCGTCTCCCCCTCGGGCAACGTGCCCGTCTACAAGGCAAATGGCTTACAAGCATATGCAGTGACCTTGATAACATACCTGAGCCTGTGGTGGTTTGGAATTTTTAACCCTGCAATAGTATACGATCACTTGGGGGAAATATACTCTGCTCTTGTATTTGGAAGCTTTGTGTTCTGTATTTTTCTGTACATAAAGGGTCATCTTGCTCCATCTTCATCTGATTCTGGATCCTCAGGGAATGTGATAATTGATTTCTACTGGGGAATGGAACTATATCCTCGCATTGGTAAGCACTTTGATATCAAAGTGTTCACAAACTGCCGTTTTGGGATGATGTCCTGGGCTGTTCTTGCTGTAACCTACTGCATAAAGCAGTATGAAATGAATGGCCGAGTTGCAGATTCAATGCTTGTGAATACTGCATTGATGTTGATCTATGTCACCAAGTTCTTCTGGTGGGAATCTGGATACTGGTGCACTATGGACATTGCTCATGATAGAGCTGGTTTCTACATTTGCTGGGGATGCTTGGTATGGGTTCCATCAATATACACCTCTCCTGGAATGTACCTTGTCAACCACCCTGTGAATTTGGGTCCCCAGCTAGCACTCTCAATTCTCCTTGCTGGAATATTGTGCATATATATAAACTATGACTGTGATCGTCAGCGCCA AATTCCGTCGGACAAATGGGAAATGCTCAATATGGGGCAAAGCTCCATCTAAGATTGTTGCTTCCTATCAGACTACAAATGGAGAAACAAAAAGCAGTCTTCTCTTGACTTCTGGATGGTGGGGCTTGTCTCGTCATTTTCACTATGTTCCAGAGATTCTATCTGC TTTTTTCTGGA CAGTTCCAGCTCTTTTTGATCATTTCCTGCCGTAC TTCT ATGTGATCTTTCTGA CCA TATTGC TGTTCGA CCGAGC TAAAA GGGA TGATGA CCGA T GCTCATC AAAGTATGGC AAGTA TTGGAAGATGTACTGCAACAAAGTACCGTG CA GGGTTATTCCTGGCA TTTACTGAGGTTGTTGA CCATGTTCAACAAC TTCTC GGGATAAAACTCAGCC ATG TT GTGAATTCCTTTCTC TGGGACGATCTACTGCTGTTTGT GTAATA TGTCATT AGCTT GATGTATGCA GGA TTA GATTCGGGCTGATT GGTTTC AACCTTTT GAGTTTGCTGTATCCAACCCTGACACAGATGAGTCAACGATGCCGCCAAATCGTGATTTTTCTTGTTAGCTCGCTGATAGGAGAGATGATTGCAGGATCATAGTTTGTGTAGTTTGTACCTTATAATGGATGTTTCGACTTCATTTTTCTGCTAGAAGCGATTAGGCAGCACGAAAATGAAATTGTTTGAGGTTCTGTACTGCTCGAATAATGTTGCTGCAACTGTATTATCCA TGAACTGTAATAATTC ]
[+] EMBL CB665569 [ GATCTCCTTCCTCCACTGTCGCTCAGATCGACGCGGGCCATGGCCAAGCCTAGGGCCTCCGCCGCCGCGGCGAAGGCGCCAGCCTCCACGCCGCCCAAGACGGTGCACTCGGCGCTCGTCACCTACGCCTCCATGCTCTCCCTCCTCTCCCTCTGCCCGCCCTTCGTCATCCTCCTGTGGTACACGATGGTGCACGCGGACGGATCCGTGGTGCGGGCGTACGAGCACCTCCGCGAGCACGGGGTGCTGGAGGGGCTCAAGGCCATCTGGCCCATGCCAACCATGGCCGCCTGGAAGATCATCTTCGGCTTCGGCCTCTTCGAGGCCGCGCTGCAGCTTCTCCTCCCCGGGAAGCGCTTCGAGGGCCCCGTCTCCCCCTCGGGCAACGTGCCCGTCTACAAGGCAAATGGCTTACAAGCATATGCAGTGACCTTGATAACATACCTGAGCCTGTGGTGGTTTGGAATTTTTAACCCTGCAATAGTATACGATCACTTGGGGGAAATATACTCTGCTCTTGTATTTGGAAGCTTTGTGTTCTGTATTTTTCTGTACATAAAGGGTCATCTTGCTCCATCTTCATCTGATTCTGGATCCTCAGGGAATGTGATAATTGATTTCTACTGGGGAATGGAACTATATCCTCGCATTGGTAAGCACTTTGATATCAAAGTGTTCACAAACTGCCGTTTTGGGATGATGTCCTGGGCTGTTCTTGCTGTAACCTACTGCATAAAGCAGTATGAAATGAATGGCCGAGTTGCAGATTCAATGCTTGg ]
[+] EMBL CB669945 [ TCCTCCACTGTCGCTCAGATCGACGCGGGCCATGGCCAAGCCTAGGGCCTCCGCCGCCGCGGCGAAGGCGCCAGCCTCCACGCCGCCCAAGACGGTGCACTCGGCGCTCGTCACCTACGCCTCCATGCTCTCCCTCCTCTCCCTCTGCCCGCCCTTCGTCATCCTCCTGTGGTACACGATGGTGCACGCGGACGGATCCGTGGTGCGGGCGTACGAGCACCTCCGCGAGCACGGGGTGCTGGAGGGGCTCAAGGCCATCTGGCCCATGCCAACCATGGCCGCCTGGAAGATCATCTTCGGCTTCGGCCTCTTCGAGGCCGCGCTGCAGCTTCTCCTCCCCGGGAAGCGCTTCGAGGGCCCCGTCTCCCCCTCGGGCAACGTGCCCGTCTACAAGGCAAATGGCTTACAAGCATATGCAGTGACCTTGATAACATACCTGAGCCTGTGGTGGTTTGGAATTTTTAACCCTGCAATAGTATACGATCACTTGGGGGAAATATACTCTGCTCTTGTATTTGGAAGCTTTGTGTTCTGTATTTTTCTGTACATAAAGGGGCATCTTGCTCCATCTTCATCTGATTCTGGATCCTCAGGGAATGTGATAATTGATTTCTACTGGGGAATGGAACTATATCCTCGCATTGGTAAGCACTTTGATATCAAAGTGTTCACAAACTGCCGTTTTGGGATGATGTCCTGGGCTGTTCTTGCTGTAACCTACTGCATAAAGCAGTATGAAATGAATG ]
[+] EMBL CF303445 [ CAACCATGGCCGCCTGGAAGATCATCTTCGGCTTCGGCCTCTTCGAGGCCGCGCTGCAGCTTCTCCTCCCCGGGAAGCGCTTCGAGGGCCCCGTCTCCCCCTCGGGCAACGTGCCCGTCTACAAGGCAAATGGCTTACAAGCATATGCAGTGACCTTGATAACATACCTGAGCCTGTGGTGGTTTGGAATTTTTAACCCTGCAATAGTATACGATCACTTGGGGGAAATATACTCTGCTCTTGTATTTGGAAGCTTTGTGTTCTGTATTTTTCTGTACATAAAGGGTCATCTTGCTCCATCTTCATCTGATTCTGGATCCTCAGGGAATGTGATAATTGATTTCTACTGGGGAATGGAACTATATCCTCGCATTGGTAAGCACTTTGATATCAAAGTGTTCACAAACTGCCGTTTTGGGATGATGTCCTGGGCTGTTCTTGCTGTAACCTACTGCATAAAGCAGTATGAAATGAATGGCCGAGTTGCAGATTCAATGCTTGTGAATACTGCATTGATGTTGATCTATGTCACCAAGTTCTTCTGGTGGGAATCTGGATACTGGTGCACTATGGACATTGCTCATGATAGAGCTGGTTTCTACATTTGCTGGGGATGCTTGGTATGGGTTCCATCAA ]
[+] EMBL CA753545 [ CCCTGTGAATTTGGGTCCCCAGCTAGCACTCTCAATTCTCCTTGCTGGAATATTGTGCATATATATAAACTATGACTGTGATCGTCAGCGCCAAGAATTCCGTCGGACAAATGGGAAATGCTCAATATGGGGCAAAGCTCCATCTAAGATTGTTGCTTCCTATCAGACTACAAATGGAGAAACAAAAAGCAGTCTTCTCTTGACTTCTGGATGGTGGGGCTTGTCTCGTCATTTTCACTATGTTCCAGAGATTCTATCTGC TTTTTTCTGGA CAGTTCCAGCTCTTTTTGATCATTTCCTGCCGTAC TTCT ATGTGATCTTTCTGA CCA TATTGC TGTTCGA CCGAGC TAAAA GGGA TGATGA CCGA T GCTCATC AAAGTATGGC AAGTA TTGGAAGATGTACTGCAACAAAGTACCGTG CA GGGTTATTCCTGGCA TTTACTGAGGTNGTNGA CCATGTNCAACAAC TTCTC GGGATAAAACTCAGCC ATG TG GTGAATTCCTTTCTC TGGGACGATCTACTGCTGTTTGT GTAATATTGTCA T AGCCT GATGTATGCANGAA ATA GA TCNGGCTGA T GGGTTC AA CTTTT GAGTTTGCTGTATTCAACCCGGACCCAGATGAGTC ACGATGCCGCC AATCGTGAT ]
[+] EMBL C73396 [ GAGAAACAAAAAGCAGTCTTCTCTTGACTTCTGGATGGTGGGGCTTGTNTCGTCATTTTNACTATGTTCCAGAGATTCTATCTGC TTTTTNCTGGA CAGTTCCAGCTCTTTTTNATCATTTCCTGCCGTAC TTCT ATGTNATCTTNCTGA CCA TATTGC TGTTCGA CCGAGC TAAAA GGGA TGATGA CCGA T GCTCATC AAAGTATGGC AAGTA TTGGAAGATGTACTGCAACAAAGTACCGTG CA GGGTTATTCCTGGCA TTTACTGAGGTTGTTGA CCATGTTCAACAAC TTCTC GGGATAAAACTCAGCC ATGT TT GTGAATTCCTTTCTC TGGGACGATCTACTGCTGTTTGT GTAATA TGTCATT AGCTT GATGTATGCA GGA TTAGGATTCGGGCTGATTNGGTTTC AACCTTTT GAGGTTGCTGTATCCAAC ]
[+] EMBL C74691 [ ggacaGGTGGGGCTTGTCTCGTCATNTTCACTATGTTCCAGAGATTCTATCTGC TTTTTTCTGGA CAGTTCCAGCTCTTTTTGATCATTTCCTGCCGTAC TTCT ATGTGATCTTTCTGA CCA TATTGC TGTTCGA CCGAGC TAAAA GGGA TGATGA CCGA T GCTCATC AAAGTATGGC AAGTA TTGGAAGATGTACTGCAACANAGTACCGTG CA GGGTTATTCCTGGCA TTTACTGAGGTTGTTGA CCATGTTCAACAAC TTCTC GGGATAAAACTCAGCC ATG TT GTGAATTCCTTNCTC TGGGACGATCTACTGCTGTTTGT GTAATA TGTCATT AGCNT GATGTATGCA GGA TTA GATTCGGGCT ]
[-] EMBL CB665570 [ CGTCATTTTCACTATGTTCCAGAGATTCTATCTGC TTTTTTCTGGA CAGTTCCAGCTCTTTTTGATCATTTCCTGCCGTAC TTCT ATGTGATCTTTCTGA CCA TATTGC TGTTCGA CCGAGC TAAAA GGGA TGATGC CCGA T GCTCATC AAAGTATGGC AAGTA TTGGAAGATGTACTGCAACAAAGTCCCGTG CA GGGTTATTCCTGGCA TTTACTGAGGTTGTTGC CCATGTTCAACAAC TTCTC GGGATAAAACTCACCC ATG TT GTGAATTCCTTTCTC TGGGACGATCTACTGCTGTTTGT GTAATA TGTCATT AGCTT GATGTATGCA GGA TTA GATTCGGGCTGATT GGTTTC ACCCTTTT GAGTTTGCTGTATCCACCCCTGCCCCAGATGAGTCAACGATGCCGCCAAATCGTGATTTTTCTTGTTAGCTCGCTGATAGGAGAGATGATTGCAGGATCATAGTTTGTGTAGTTTGTCCCTTATAATGGATGTTTCGACTTCATTTTTCTGCTAGAAGCGATTAGGCAGCCCGAAAATGAAATTGTTCGAGGTTCTGTACTGCTCGAATAATGTTGCTGCACCTGTATTATCCA AGAGGGGTAATAATTC ]
[+] EMBL BI806455 [ TCTGCGCTTTTTCGGGACCAGTCCCACCTC TTTGACCATTTCC GCCGNACTTTCTAATGGGATTCTTCTGACCCATTATTGCTTGTTCGACCCGAACTTAAAAGGGGATTGATGACCCGAGTGGCTCATCAAAAGTATGGCCAAAGTATTTGGAAGATGTACTGCAACAAAGTACCGTGCCAGGGGTTATTCCTGGCATTTTACTGA GTTGTTGA CCATGTTCAACAAC TTCTC GGGATAAAACTCAGCC ATG TT GTGAATTCCTTTCTC TGGGACGATCTACTGCTGTTTGT GTAATA TGTCATT AGCTT GATGTATGCA GGA TTA GATTCGGGCTGATT GGTTTC AACCTTTT GAGTTTGCTGTATCCAACCCTGACACAGATGAGTCAACGATGCCGCCCAATCGNGATTTNTCTTGTTAGCTCGCTGATAGGAGAGATGATTGCAGGATCATAGTTTGTGTAGTTTGTACCTTATAATGGATGTTTCGACTTCATTTTTCTGCTAGAAGCGATTAGGCAGCACGAAAATGAAATTGTTTGAGGTTCTGTACTGCTCGAATAATGTTGCTGCAACTGTATTATCCACTGAACTGTAATAATTCAAAaaaaaaa ]
[+] EMBL BM421372 [ ccaGGTTATTCCTGNCA TTTACTGA GTTGTTGACCCATGTTCAACAAC TTCTC GGGATAAAACTCA CC ATG TT GTGAATTCCTTTCTC TGGGACGATCTACTGCTGTTTGT GTAATA TGTCATT AGCTT GATGTATGCA GGA TTA GATTCGGGCTGATT GGTTTC AACCTTTT GAGTTTGCTGTATCCAACCCTGACACAGATGAGTCAACGATGCCGCCAAATCGTGATTTTTCTTGTTAGCTCGCTGATAGGAGAGATGATTGCAGGATCATAGTTTGTGTAGTTTGTACCTTATAATGGATGTTTCGACTTCATTTTTCTGCTAGAAGCGATTAGGCAGCACGAAAATGAAATTGTTTGAGGTTCTGTACTGCTCGAATAATGTTACTGCAACTGTATTATCCA TGAACTGTAATAATTCAAAGTTTGGCCACAGG CATGGTGATTGGTTCTAAAAAAAA ]
[+] EMBL BQ905953 [ tgGTTGA CCCTGTTCAACAACTTTTCTCNGGGGATAAAACTCACCCAATGGTTTGGGGANTCCCTTTCTCTTGGGACGATCTACTGCTGTTTGTGGTAANA GTCATTAAGCTTGGATGTATGCA GGATTTA GATTC GGCTGATT GGTTTCAAACCTTTTNGAGTTTGCTGTATCCAACCCTGACACAGATGAGTCAACGATGCCGCCAAATCGTGATTTTTCTTGTTAGCTCGCTGATAGGAGAGATGATTGCAGGATCATAGTTTGTGTAGTTTGTACCTTATAATGGATGTTTCGACTTCATTTTTCTGCTAGAAGCGATTAGGCAGCACGAAAATGAAATTGTTTGAGGTTCTGTACTGCTCGAATAATGTTACTGCAACTGTATTATCCA TGAACTGTAATAATTCAAAGTTTGGCAACAGGCCATGGTGATTGGTTCTACACAAAAAAAAAA]
[-] EMBL BI306403 [ GAGAGATGATTGCAGGATCATAGTTTGTGTAGTTTGTACCTTATAATGGATGTTTCGACTTCATTTTTCTGCTAGAAGCGATTAGGCAGCCCGAAAATGAAATTGTTTGAGGTTCTGTACTGCTCGAATAATGTTACTGCAACTGTATTATCCA TGAACTGTAATAATTCAAAGTTTGG ]
[+] EMBL BM419329 [ tccgCATAGTTTGTGTAGTTTGTACCTTATAATGGATGTTTCGACTTCATTTTTCTGCTAGAAGCGATTAGGCAGCACGAAAATGAAATTGTTTGAGGTTCTGTACTGCTCGAATAATGTTACTGCAACTGTATTATCCACTNCCCNGTAATAATTCAAAGTTTGGCAAaaaa ]
consensusID : consensus_14063#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 791 fasta sequence
[CTTGGTATGGGTTCCATCAATATACACCTCTCCTGGAATGTACCTTGTCAACCACCCTGTGAATTTGGGTCCCCAGCTAGCACTCTCAATTCTCCTTGCTGGAATATTGTGCATATATATAAACTATGACTGTGATCGTCAGCGCCAAGAATTCCGTCGGACAAATGGGAAATGCTCAATATGGGGCAAAGCTCCATCTAAGATTGTTGCTTCCTATCAGACTCCAAATGGAGAAACAAAAAGCAGTCTTCTCTTGACTTCTGGATGGTGGGGCTTGTCTCGTCATTTTCACTATGTTCCAGAGATTCTATCTGCTTTTTTCTGGACAGTTCCAGCTCTTTTTGATCATTTCCTGCCGTACTTCTATGTGATCTTTCTGACCATATTGCTGTTCGACCGAGCTAAAAGGGATGATGCCCGATGCTCATCAAAGTATGGCAAGTATTGGAAGATGTACTGCAACAAAGTACCGTGCAGGGTTATTCCTGGCATTTACTGAGGATTAGATTCGGGCTGATTGGTTTCAACCTTTTGAGTTTGCTGTATCCAACCCTGACACAGATGAGTCAACGATGCCGCCAAATCGTGATTTTTCTTGTTAGCTCGCTGATAGGAGAGATGATTGCAGGATCATAGTTTGTGTAGTTTGTACCTTATAATGGATGTTTCGACTTCATTTTTCTGCTAGAAGCGATTAGGCAGCACGAAAATGAAATTGTTTGAGGTTCTGTACTGCTCGAATAATGTTGCTGCAACTGTATTATCCATGAACTGTAATAATTCAAAGTTTG]
[-] EMBL CB669944 [CTTGGTATGGGTTCCATCAATATACACCTCTCCTGGAATGTACCTTGTCAACCACCCTGTGAATTTGGGTCCCCAGCTAGCACTCTCAATTCTCCTTGCTGGAATATTGTGCATATATATAAACTATGACTGTGATCGTCAGCGCCAAGAATTCCGTCGGACAAATGGGAAATGCTCAATATGGGGCAAAGCTCCATCTAAGATTGTTGCTTCCTATCAGACTCCAAATGGAGAAACAAAAAGCAGTCTTCTCTTGACTTCTGGATGGTGGGGCTTGTCTCGTCATTTTCACTATGTTCCAGAGATTCTATCTGCTTTTTTCTGGACAGTTCCAGCTCTTTTTGATCATTTCCTGCCGTACTTCTATGTGATCTTTCTGACCATATTGCTGTTCGACCGAGCTAAAAGGGATGATGCCCGATGCTCATCAAAGTATGGCAAGTATTGGAAGATGTACTGCAACAAAGTACCGTGCAGGGTTATTCCTGGCATTTACTGAGGATTAGATTCGGGCTGATTGGTTTCAACCTTTTGAGTTTGCTGTATCCAACCCTGACACAGATGAGTCAACGATGCCGCCAAATCGTGATTTTTCTTGTTAGCTCGCTGATAGGAGAGATGATTGCAGGATCATAGTTTGTGTAGTTTGTACCTTATAATGGATGTTTCGACTTCATTTTTCTGCTAGAAGCGATTAGGCAGCACGAAAATGAAATTGTTTGAGGTTCTGTACTGCTCGAATAATGTTGCTGCAACTGTATTATCCATGAACTGTAATAATTCAAAGTTTG]
consensusID : consensus_14063#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 742 fasta sequence
[ACTCCTCCCCTCGCCTTCACCCTTCCCTGCCTCGGTCCACTCCTCTGGCCCCTTCGCCTCCAGCTACGGAACAACAAATACTACTACGCAAAAAAGTGCCCTAAGCTCGCAAGCAGCAGCAGCGACTGCGCCGAGGAGGAGGAGAGCGTCGAGCAGCTCGCTCCCCTCGCGCCTCTCGGATGCGCTCGCCCGAAAGCGCGTGGGCTTCTCCCTCCCACGATTCGCCCCATCCAAAAGCGTAGGATGGATCCAGCGCGATGAGGAGGAGGAGGAGGGGGAGGAGGTGGAGGAGCATCTTCGGCTTCGGCCTCTTCGAGGCCGCGCTGCAGCTTCTCCTCCCCGGGAAGCGCTTCGAGGGCCCCGTCTCCCCCTCGGGCAACGTGCCCGTCTACAAGGCAAATGGCTTACAAGCATATGCAGTGACCTTGATAACATACCTGAGCCTGTGGTGGTTTGGAATTTTTAACCCTGCAATAGTATACGATCACTTGGGGGAAATATACTCTGCTCTTGTATTTGGAAGCTTTGTGTTCTGTATTTTTCTGTACATAAAGGGTCATCTTGCTCCATCTTCATCTGATTCTGGATCCTCAGGGAATGTGATAATTGATTTCTACTGGGGAATGGAACTATATCCTCGCATTGGTAAGCACTTTGATATCAAAGTGTTCACAAACTGCCGTTTTGGGATGATGTCCTGGGCTGTTCTTGCTGTAACCTACTGCATAAAGCAGTATGAAAT]
[+] EMBL CB669899 [ACTCCTCCCCTCGCCTTCACCCTTCCCTGCCTCGGTCCACTCCTCTGGCCCCTTCGCCTCCAGCTACGGAACAACAAATACTACTACGCAAAAAAGTGCCCTAAGCTCGCAAGCAGCAGCAGCGACTGCGCCGAGGAGGAGGAGAGCGTCGAGCAGCTCGCTCCCCTCGCGCCTCTCGGATGCGCTCGCCCGAAAGCGCGTGGGCTTCTCCCTCCCACGATTCGCCCCATCCAAAAGCGTAGGATGGATCCAGCGCGATGAGGAGGAGGAGGAGGGGGAGGAGGTGGAGGAGCATCTTCGGCTTCGGCCTCTTCGAGGCCGCGCTGCAGCTTCTCCTCCCCGGGAAGCGCTTCGAGGGCCCCGTCTCCCCCTCGGGCAACGTGCCCGTCTACAAGGCAAATGGCTTACAAGCATATGCAGTGACCTTGATAACATACCTGAGCCTGTGGTGGTTTGGAATTTTTAACCCTGCAATAGTATACGATCACTTGGGGGAAATATACTCTGCTCTTGTATTTGGAAGCTTTGTGTTCTGTATTTTTCTGTACATAAAGGGTCATCTTGCTCCATCTTCATCTGATTCTGGATCCTCAGGGAATGTGATAATTGATTTCTACTGGGGAATGGAACTATATCCTCGCATTGGTAAGCACTTTGATATCAAAGTGTTCACAAACTGCCGTTTTGGGATGATGTCCTGGGCTGTTCTTGCTGTAACCTACTGCATAAAGCAGTATGAAAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14063#0 CCGTCTGTCTCTGCCCCACCCACGCATACTAGGAAGGCAGGGGAGACGAGGAGCCAGAGC 60
consensus_14063#1 ------------------------------------------------------------
consensus_14063#2 ------------------------------------------------------------
consensus_14063#0 CAAGTCAAGCCGCTTCCTCTCCTCTCGTCTCGGCGCCTCACTCGATCTCCTTCCTCCACT 120
consensus_14063#1 ------------------------------------------------------------
consensus_14063#2 ------------------------------------------------------------
consensus_14063#0 GTCGCTCAGATCGACGCGGGCCATGGCCAAGCCTAGGGCCTCCGCCGCCGCGGCGAAGGC 180
consensus_14063#1 ------------------------------------------------------------
consensus_14063#2 ------------------------------------------------------------
consensus_14063#0 GCCAGCCTCCACGCCGCCCAAGACGGTGCACTCGGCGCTCGTCACCTACGCCTCCATGCT 240
consensus_14063#1 ------------------------------------------------------------
consensus_14063#2 ------------------------------------------------------------
consensus_14063#0 CTCCCTCCTCTCCCTCTGCCCGCCCTTCGTCATCCTCCTGTGGTACACGATGGTGCACGC 300
consensus_14063#1 ------------------------------------------------------------
consensus_14063#2 ------------------------------------------------------------
consensus_14063#0 GGACGGATCCGTGGTGCGGGCGTACGAGCACCTCCGCGAGCACGGGGTGCTGGAGGGGCT 360
consensus_14063#1 ------------------------------------------------------------
consensus_14063#2 ------------------------------------------------------------
consensus_14063#0 CAAGGCCATCTGGCCCATGCCAACCATGGCCGCCTGGAAGATCATCTTCGGCTTCGGCCT 420
consensus_14063#1 ------------------------------------------------------------
consensus_14063#2 ------------------------------------------------------------
consensus_14063#0 CTTCGAGGCCGCGCTGCAGCTTCTCCTCCCCGGGAAGCGCTTCGAGGGCCCCGTCTCCCC 480
consensus_14063#1 ------------------------------------------------------------
consensus_14063#2 ------------------------------------------------------------
consensus_14063#0 CTCGGGCAACGTGCCCGTCTACAAGGCAAATGGCTTACAAGCATATGCAGTGACCTTGAT 540
consensus_14063#1 ------------------------------------------------------------
consensus_14063#2 ------------------------------------------------------------
consensus_14063#0 AACATACCTGAGCCTGTGGTGGTTTGGAATTTTTAACCCTGCAATAGTATACGATCACTT 600
consensus_14063#1 ------------------------------------------------------------
consensus_14063#2 ------------------------------------------------------------
consensus_14063#0 GGGGGAAATATACTCTGCTCTTGTATTTGGAAGCTTTGTGTTCTGTATTTTTCTGTACAT 660
consensus_14063#1 ------------------------------------------------------------
consensus_14063#2 ------------------------------------------------------------
consensus_14063#0 AAAGGGTCATCTTGCTCCATCTTCATCTGATTCTGGATCCTCAGGGAATGTGATAATTGA 720
consensus_14063#1 ------------------------------------------------------------
consensus_14063#2 ------------------------------------------------------------
consensus_14063#0 TTTCTACTGGGGAATGGAACTATATCCTCGCATTGGTAAGCACTTTGATATCAAAGTGTT 780
consensus_14063#1 ------------------------------------------------------------
consensus_14063#2 ------------------------------------------------------------
consensus_14063#0 CACAAACTGCCGTTTTGGGATGATGTCCTGGGCTGTTCTTGCTGTAACCTACTGCATAAA 840
consensus_14063#1 ------------------------------------------------------------
consensus_14063#2 ------------------------------------------------------------
consensus_14063#0 GCAGTATGAAATGAATGGCCGAGTTGCAGATTCAATGCTTGTGAATACTGCATTGATGTT 900
consensus_14063#1 ------------------------------------------------------------
consensus_14063#2 ------------------------------------------------------------
consensus_14063#0 GATCTATGTCACCAAGTTCTTCTGGTGGGAATCTGGATACTGGTGCACTATGGACATTGC 960
consensus_14063#1 ------------------------------------------------------------
consensus_14063#2 ------------------------------------------------------------
consensus_14063#0 TCATGATAGAGCTGGTTTCTACATTTGCTGGGGATGCTTGGTATGGGTTCCATCAATATA 1020
consensus_14063#1 ------------------------------------CTTGGTATGGGTTCCATCAATATA 24
consensus_14063#2 ------------------------------------------------------ACTCCT 6
* *
consensus_14063#0 CACCTCTCCTGGAATGTACCTTGTCAACCACCCTGTGAATTTGGGTCCCCAGCTAGCACT 1080
consensus_14063#1 CACCTCTCCTGGAATGTACCTTGTCAACCACCCTGTGAATTTGGGTCCCCAGCTAGCACT 84
consensus_14063#2 CCCCTCGCCTTCACCCTTCCCTGCC--TCGGTCCACTCCTCTGGCCCCTTCGCCTCCAGC 64
* **** *** * * ** ** * * * * *** ** ** **
consensus_14063#0 CTCAATTCTCCTTGCTGGAATATTGTGCATATATATAAACTATGACTGTGATCGTCAGCG 1140
consensus_14063#1 CTCAATTCTCCTTGCTGGAATATTGTGCATATATATAAACTATGACTGTGATCGTCAGCG 144
consensus_14063#2 TACGGAACAACAAAT---ACTACTACGCAAAAAAGTGCCCTAAGCTCGCAAGCAGCAGCA 121
* * * * ** * *** * * * *** * * * * ****
consensus_14063#0 CCAA--ATTCCGTCGGACAAATGGGAAATGCTCAATATGGGGCAAAGCTC---CATCTAA 1195
consensus_14063#1 CCAAGAATTCCGTCGGACAAATGGGAAATGCTCAATATGGGGCAAAGCTC---CATCTAA 201
consensus_14063#2 GCGA---CTGCGCCGAGGAGGAGGAGAGCGTCGAGCAGCTCGCTCCCCTCGCGCCTCTCG 178
* * * ** ** * ** * * * * ** *** * ***
consensus_14063#0 GATTGTTGCTTCCTATCAGACTACAAATGGAGAAACAAAAAGCAGTCTTCTCTTGACTTC 1255
consensus_14063#1 GATTGTTGCTTCCTATCAGACTCCAAATGGAGAAACAAAAAGCAGTCTTCTCTTGACTTC 261
consensus_14063#2 GATGCGCTCGCCCGAAAGCGCGTGGGCTTCTCCCTCCCACGATTCGCCCCATCCAAAAGC 238
*** * ** * * * * * * * * *
consensus_14063#0 TGGATGGTGGGGCTTGTCTCGTCATTTTCACTATGTTCCAGAGATTCTATCTGCTTTTTT 1315
consensus_14063#1 TGGATGGTGGGGCTTGTCTCGTCATTTTCACTATGTTCCAGAGATTCTATCTGCTTTTTT 321
consensus_14063#2 -GTAGGATGGATCCAGCGCGATGAGGAGGAGGAGGAGGGGGAGGAGGTGGAGGAGCATCT 297
* * * *** * * * * * * * *** * * * *
consensus_14063#0 CTGGACAGTTCCAGCTCTTTTTGATCAT-TTCCTGCCGTACTTCTATGTGAT-CTTTCTG 1373
consensus_14063#1 CTGGACAGTTCCAGCTCTTTTTGATCAT-TTCCTGCCGTACTTCTATGTGAT-CTTTCTG 379
consensus_14063#2 TCGGC---TTCGGCCTCTTCGAGGCCGCGCTGCAGCTTCTCCTCCCCGGGAAGCGCTTCG 354
** *** ***** * * * * ** * ** * ** * * *
consensus_14063#0 ACCATATTGCTGTTCGACCGAGCTAAAAGGGATGATGACCGATGCTCATCAAAGTATGGC 1433
consensus_14063#1 ACCATATTGCTGTTCGACCGAGCTAAAAGGGATGATGCCCGATGCTCATCAAAGTATGGC 439
consensus_14063#2 AGGGCCCCGTCTCCCCCTCGGGCAAC--------GTGCCCG----TCTACAAGGCAAATG 402
* * * ** ** * ** *** ** *** * *
consensus_14063#0 AAGTATTGGAAGATGTACTGCAACAAAGTACCGTGCAGGGTTATTCCTGGCATTTACTGA 1493
consensus_14063#1 AAGTATTGGAAGATGTACTGCAACAAAGTACCGTGCAGGGTTATTCCTGGCATTTACTGA 499
consensus_14063#2 GCTTACAAGCATATGCAGTG-ACCTTGATAACATAC----CTGAGCCTGTGGTGGTTTGG 457
** * * *** * ** * * ** * * * * **** * **
consensus_14063#0 GGTTGTTGACCATGTTCAACAACTTCTCGGGATAAAACTCAGCCATGTTGTGAATTCCTT 1553
consensus_14063#1 GG---------------------------------------------------------- 501
consensus_14063#2 AAT--------------------------------------------------------- 460
consensus_14063#0 TCTCTGGGACGATCTACTGCTGTTTGTGTAATATGTCATTAGCTTGATGTATGCAGGATT 1613
consensus_14063#1 ---------------------------------------------------------ATT 504
consensus_14063#2 ---------------------------------------------------------TTT 463
**
consensus_14063#0 AGATTCGGGCTGATTGGTTTCAACCTTTTGAGTTTGCTGTATCCAACCCTGACACAGATG 1673
consensus_14063#1 AGATTCGGGCTGATTGGTTTCAACCTTTTGAGTTTGCTGTATCCAACCCTGACACAGATG 564
consensus_14063#2 TAACCCTG--CAATAGTATACGATCACTTGGGGGAAATATACTCTGCTCTTGTATTTGGA 521
* * * ** * * * * * *** * * ** * * ** *
consensus_14063#0 AGTCAACGATGCCGCCAAATCGTG-ATTTTTCTTGTTAGCTCGCTGATAGGAGAGATGAT 1732
consensus_14063#1 AGTCAACGATGCCGCCAAATCGTG-ATTTTTCTTGTTAGCTCGCTGATAGGAGAGATGAT 623
consensus_14063#2 AGCTTTGTGTTCTGTATTTTTCTGTACATAAAGGGTCATCTTGCTCCATCTTCATCTGAT 581
** * * * * ** * * ** * ** *** * ****
consensus_14063#0 TGCAGGATCATAGTTTGTGTAGTTTGTACCTTATAATGGATGTTTCGACTTCATTTTTCT 1792
consensus_14063#1 TGCAGGATCATAGTTTGTGTAGTTTGTACCTTATAATGGATGTTTCGACTTCATTTTTCT 683
consensus_14063#2 TCTGGATCCTCAGGGAATGTGATAATTGATTTCTACTGGGGAATGGAACTATATCCTCGC 641
* * * ** *** * * ** ** *** * *** ** *
consensus_14063#0 GCTAG-AAGCGATTAGGCAGCACGAAAATGAAATTGTTTGAGGTTCTGTACTGCTCGAAT 1851
consensus_14063#1 GCTAG-AAGCGATTAGGCAGCACGAAAATGAAATTGTTTGAGGTTCTGTACTGCTCGAAT 742
consensus_14063#2 ATTGGTAAGCACTTTGATATCAAAGTGTTCACA--AACTGCCGTTTTGGGATGATGTCCT 699
* * **** ** * * ** * * * ** *** ** ** * *
consensus_14063#0 AATGTTACTGCAACTGTATTATCCATGAACTGTAATAATTCAAAGTTTGGCAACAGGCAT 1911
consensus_14063#1 AATGTTGCTGCAACTGTATTATCCATGAACTGTAATAATTCAAAGTTTG----------- 791
consensus_14063#2 GG-GCTGTTCTTGCTGTA--ACCTACTGCATAAAGCAGTATGAAAT-------------- 742
* * * ***** * * * * * * * ** *
consensus_14063#0 GGTGATTGGTTCTAAAAAAAAAAAAAA 1938
consensus_14063#1 ---------------------------
consensus_14063#2 ---------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||