cluster # 14077

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Oryza sativa
cluster # 14077 cluster # 14077 Sequences # 15 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_14077#0 length = 1715 sequences # 12

consensus_14077#1 length = 646 sequences # 2
consensus_14077#2 length = 264 sequences # 1

consensusID : consensus_14077#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 12
consensus length = 1715
fasta sequence

                              [TCAAGAAGAAAAATAATTAATTACTCGCAGCAAAGGACGGACAGTTTCCTGCGCAAATTCCACGTTCCACCTTCCTCTTCGGTCGTCTCCGCCGGCTTGGAGTTGGGAGAAGAAGCTCAAACGCGGAGGCCACCACGACCACCACAACACCACCACCTCTTCTCCTAGTCAAACCCACCCTTCCCTTGTAATCTTCGCAACAACAGCAGGACGGCAAGTTCGTAGCTTTCCCCTCCGCTTTATACACCCGCATCTCCAAATCTGAGGAGAGAGGGGAGAAGATAAAGAAAGAAAAGCGCGCATTTTGGTGTCCGGGGAAGGGAAAAGGGCGGTTCTTGGCGTCGGTGGCGGGTTTTGTTTTTTGGGGGTGGAAGCGGTTGGTTTGGGGATGAGCAGCGGCCAGGAAGCCGGATCGAGCTCCGGTGGATCCGGCGATGGCGGCGCGGCGGCGCCCAGGAGGAACACCAGGAAGCCCAAGTATTCCAAGTTTACTCAGCAGGAGCTCCCAGCTTGCAAGCCGATTCTTACTCCAAAATGGGTCATTTCAGTTTTCGTTCTTGTCGGAGTCATTTTTGTCCCAATCGGGCTTGTTTCGTTGAAGGCTTCACGAAAGGTTGTTGAGATTGTTGATCGATACGATGATGCATGTGTCCCAGCTAATACAACTGACAAGCTTGCTTACATCCAGAACCCAACAATAAGCAAAAACTGCAGAAGGACTCTTAAGGTTCCAAAGGATATGGATGCACCAATCTTTGTGTATTACCAGCTGGATAACTTTTATCAGAATCATAGGAGATATGTCAAGAGCCGGAGTGATGCACAGCTAAGAGATCCCAAAAAGGCAAATGACACCTCCACTTGTGATCCCGAGGGTACAGCAAATGGAATGGCAATTGTTCCTTGTGGTCTGATTGCATGGAGCATATTCAATGATACATATGGCTTTGTTCGCAACAGTAAGAACCTGCCAGTGGACAAGAAAAACATCTCTTGGAAGAGTGACAGGGAGCACAAATTTGGA-CGTGAT-GTCTTTCCAAAGAACTTCCAGAATGGTTCTCTTATAGGTGGAAAAACACTTGAT-CCAAATAAATCGTTGAGTAAACAAGAAGACCTTATTGTTTGGATGAGAACTGCTGCACTTCCAACATTCAGAAAGCTGTATGGTAGGATACACACTGACCTCAAGAAAGGTGACACCATTACGGTGACATTGGAGAACAACTACAA-CACATATAGCTTTAGTGGCAAAAAGAAGTTGGTACTTTCTACCTCGACATGGCTCGGTGGAAAGAATGATTTTCTTGGTCTAGCATATCTCAGTGTTGGTGGACTCTGCTTCTTCCTGGCATTTGCATTCACCTTGCTGTACTTGATAAAACCAAGGAAAATGGGTGACAACAACTACTTGTCATGGAACAGAAACCCTGCAGGCCGTTAATAAGCTCTTCAAACTTTTAAGTTGCAAATTCAACATGAAGCAAGTTGGATTATGGATTCAAATGTATCTTGTACTAGATAGCGGTTTTATTTGTTAGCCGTGCTGGAGTGCCAATACGGCTTATACCAATTAGGGCAGCGTTTATGAGCAACACTGATGTACATTATGTTGCAAAGAAAAATA-TATATATATACAGCCTTCTTTTGTTGAAAATTTTAAATATCCCAGAAGTTAAATGGAATGATTTTTATAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AK069063             [TCAAGAAGAAAAATAATTAATTACTCGCAGCAAAGGACGGACAGTTTCCTGCGCAAATTCCACGTTCCACCTTCCTCTTCGGTCGTCTCCGCCGGCTTGGAGTTGGGAGAAGAAGCTCAAACGCGGAGGCCACCACGACCACCACAACACCACCACCTCTTCTCCTAGTCAAACCCACCCTTCCCTTGTAATCTTCGCAACAACAGCAGGACGGCAAGTTCGTAGCTTTCCCCTCCGCTTTATACACCCGCATCTCCAAATCTGAGGAGTGAGGGGAGAAGATAAAGAAAGAAAAGCGCGCATTTTGGTGTCCGGGGAAGGGAAAAGGGCGGTTCTTGGCGTCGGTGGCGGGTTTTGTTTTTTGGGGGTGGAAGCGGTTGGTTTGGGGATGAGCAGCGGCCAGGAAGCCGGATCGAGCTCCGGTGGATCCGGCGATGGCGGCGCGGCGGCGCCCAGGAGGAACACCAGGAAGCCCAAGTATTCCAAGTTTACTCAGCAGGAGCTCCCAGCTTGCAAGCCGATTCTTACTCCAAAATGGGTCATTTCAGTTTTCGTTCTTGTCGGAGTCATTTTTGTCCCAATCGGGCTTGTTTCGTTGAAGGCTTCACGAAAGGTTGTTGAGATAGTTGATCGATACGATGATGCATGTGTCCCAGCTAATACAACTGACAAGCTTGCTTACATCCAGAACCCAACAATAAGCAAAAACTGCAGAAGGACTCTTAAGGTTCCAAAGGATATGGATGCACCAATCTTTGTGTATTACCAGCTGGATAACTTTTATCAGAATCATAGGAGATATGTCAAGAGCCGGAGTGATGCACAGCTAAGAGATCCCAAAAAGGCAAATGACACCTCCACTTGTGATCCCGAGGGTACAGCAAATGGAATGGCAATTGTTCCTTGTGGTCTGATTGCATGGAGCATATTCAATGATACATATGGCTTTGTTCGCAACAGTAAGAACCTGCCAGTGGACAAGAAAAACATCTCTTGGAAGAGTGACAGGGAGCACAAATTTGGA CGTGAT GTCTTTCCAAAGAACTTCCAGAATGGTTCTCTTATAGGTGGAAAAACACTTGAT CCAAATAAATCGTTGAGTAAACAAGAAGACCTTATTGTTTGGATGAGAACTGCTGCACTTCCAACATTCAGAAAGCTGTATGGTAGGATACACACTGACCTCAAGAAAGGTGACACCATTACGGTGACATTGGAGAACAACTACAA CACATATAGCTTTAGTGGCAAAAAGAAGTTGGTACTTTCTACCTCGACATGGCTCGGTGGAAAGAATGATTTTCTTGGTCTAGCATATCTCAGTGTTGGTGGACTCTGCTTCTTCCTGGCATTTGCATTCACCTTGCTGTACTTGATAAAACCAAGGAAAATGGGTGACAACAACTACTTGTCATGAAACAGAAACCCTGCAGGCCGTTAATAAGCTCTTCAAACTTTTAAGTTGCAAATTCAACATGAAGCAAGTTGGATTATGGATTCAAATGTATCTTGTACTAGATAGCGGTTTTATTTGTTAGCCGTGCTGGAGTGCCAATACGGCTTATACCAATTAGGGCAGCGTTTATGAGCAACACTGATGTACATTATGTTGCAAAGAAAAATA TATATATATACAGCCTTCTTTTGTTGAAAATTTTAAATATCCCAGAAGTTAAATGGAATGATTT                           ]
[+] EMBL C26666               [                                                                                                                    TCAAACGCGGAGGCCACCACGACCACCACAACACCACCACCTCTTCTCCTAGTCAAACCCACCCTTCCCTTGTAATCTTCGCAACAACAGCAGGACGGCAAGTTCGTAGCTTTCCCCTCCGCTTTATACACCCGNATCTCCAAATCTGAGGAGAGAGGGGAGAAGATAAAGAAAGAAAAGCGCGCATTTTGGTGTCCGGGGAAGGGAAAAGGGCGGTTCTTGGCGTCGGTGGCGGGTTTTGTTTTTTGGGGGTGGAAGCGGTTGGTTTGGGGATGAGCAACGGNCAGGAAGCCGGATCGAGCTCCGGTGGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL AU065794             [                                                                                                                          GCGGAGGCCACCACGACCACCACAACACCACCACCTCTTCTCCTAGTCAAACCCACCCTTCCCTTGTAATCTTCGCAACAACAGCAGGACGGCAAGTTCGTAGCTTTCCCCTCCGCTTTATACACCCGCATCTCCAAATCTGAGGAGAGAGGGGAGAAGATAAAGAAAGAAAAGCGCGCATTTTGGTGTCCGGGGAAGGGAAAAGGGCGGTTCTTGGCGTCGGTGGCGGGTTTTGTTTTTTGGGGGTGGAAGCGGTTGGTTTGGGGATGAGCAGCGGCCAGGAAGCCGGATCGAGCTCCGGTGGATCCGGCGATGGCGGCGCGGCGNCG CCAGGAGG ACACCANGGAGCCCAAGTATTCCAAG TTACTCAGCAGGAG TTCCAGNTTG AAGCCGATTCTTATTCC AAATNGGTCATTca                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CF313475             [                                                                                                                                                         CACCTCTTCTCCTAGTCAAACCCACCCTTCCCTTGTAATCTTCGCAACAACAGCAGGACGGCAAGTTCGTAGCTTTCCCCTCCGCTTTATACACCCGCATCTCCAAATCTGAGGAGAGAGGGGAGAAGATAAAGAAAGAAAAGCGCGCATTTTGGTGTCCGGGGAAGGGAAAAGGGCGGTTCTTGGCGTCGGTGGCGGGTTTTGTTTTTTGGGGGTGGAAGCGGTTGGTTTGGGGATGAGCAGCGGCCAGGAAGCCGGATCGAGCTCCGGTGGATCCGGCGATGGCGGCGCGGCGGCGCCCAGGAGGAACACCAGGAAGCCCAAGTATTCCAAGTTTACTCAGCAGGAGCTCCCAGCTTGCAAGCCGATTCTTACTCCAAAATGGGTCATTTCAGTTTTCGTTCTTGTCGGAGTCATTTTTGTCCCAATCGGGCTTGTTTCGTTGAAGGCTTCACGAAAGGTTGTTGAGATTGTTGATCGATACGATGATGCATGTGTCCCAGCTAATACAACTGACAAGCTTGCTTACATCCAGAACCCAACAATAAGCAAAAACTGCAGAAGGACTCTTAAGGTTCCAAAGGATATGGATGCACCAATCTTTGTGTATTACCAGCTGGATAACTTTTATCAGAATCATAGGAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL CB652309             [                                                                                                                                                                                                         AACAGCCGGACGGCAAGTTCGTAGCTTTCCCCTCCGCTTTATACACCCGCATCTCCAAATCTGAGGAGAGAGGGGAGAAGATAAAGAAAGAAAAGCGCGCATTTTGGTGTCCGGGGAAGGGAAAAGGGCGGTTCTTGGCGTCGGTGGCGGGTTTTGTTTTTTGGGGGTGGAAGCGGTTGGTTTGGGGATGAGCAGCGGCCAGGAAGCCGGATCGAGCTCCGGTGGATCCGGCGATGGCGGCGCGGCGGCGCCCAGGAGGAACACCAGGAAGCCCAAGTATTCCAAGTTTACTCAGCAGGAGCTCCCAGCTTGCAAGCCGATTCTTACTCCAAAATGGGTCATTTCAGTTTTCGTTCTTGTCGGAGTCATTTTTGTCCCAATCGGGCTTGTTTCGTTGAAGGCTTCACGAAAGGTTGTTGAGATTGTTGATCGATACGATGATGCATGTGTCCCAGCTAATACAACTGACAAGCTTGCTTACATCCAGAACCCAACAATAAGCAAAAACTGCAGAAGGACTCTTAAGGTTCCAAAAGATATGGATGCACCAATCTTTGTGTATTACCAGCTGGATAACTTTTATCAGAATCATAGGAGATATGTCAAGAGCCGGAGTGATGCACAGCTAAGAGATCCCAAAAAGGCAAATGACACCTCCACTTGTGATCCCGAGGGTACAGCAAATGGAATGGCAATTGTTCCTTGTGGTCTGATTGCATGGAGCATATTCAATGATACATATGGCTTTGTTCGCAACAGTAAGAACCTGCCAGTGGACAAGAAAAACATCTCTTGGAAGAGTGACAGGGAGCACAAATTTGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CB621513             [                                                                                                                                                                                                                                  TTTCCCCTCCGCTTTATACACCCGCATCTCCAAATCTGAGGAGAGAGGGGAGAAGAAAAAGAAAGAAAAGCGCGCATTTTGGTGTCCGGGGAAGGGAAAAGGGCGGTTCTTGGCGTCGGTGGCGGGTTTTGTTTTTTGGGGGTGGAAGCGGTTGGTTTGGGGATGAGCAGCGGCCAGGAAGCCGGATCGAGCTCCGGTGGATCCGGCGATGGCGGCGCGGCGGCGCCCAGGAGGAACACCAGGAAGCCCAAGTATTCCAAGTTTACTCAGCAGGAGCTCCCAGCTTGCAAGCCGATTCTTACTCCAAAATGGGTCATTTCAGTTTTCGTTCTTGTCGGAGTCATTTTTGTCCCAATCGGGCTTGTTTCGTTGAAGGCTTCACGAAAGGTTGTTGAGATTGTTGATCGATACGATGATGCATGTGTCCCAGCTAATACAACTGACAAGCTTGCTTACATCCAGAACCCAACAATAAGCAAAAACTGCAGAAGGACTCTTAAGGTTCCAAAGGATATGGATGCACCGATCTTTGTGTATTACCAGCTGGATAACTTTTATCAGAATCATAGGAGATATGTCAAGAGCCGGAGTGATGCACAGCTAAGAGATCCCAAAAAGGCAAATGACACCTCCACTTGTGATCCCGAGGGTACAGCAAATGGAATGGCAATTGTTCCTTGTGGTCTGATTGCATGGAGCATATTCAATGATACATATGGCTTTGTTCGCAACAGTAAGAACCTGCCAGTGGACAAGAAAGACATCTCTTGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[-] EMBL CB621514             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              AATTGTTCCTTGTGGTCTGATTGCATGGAGCATATTCAATGATACATATGGCTTTGTTCGCAACAGTAAGAACCTGCCAGTGGACAAGAAAGACATCTCTTGGAAGAGTGACAGGGAGCACAAATTTGGA CGTGAT GTCTTTCCAAAGAACTTCCAGAATGGTTCTCTTATAGGTGGAAAAACACTTGAT CCAAATAAATCGTTGAGTGAACAAGAAGACCTTATTGTTTGGATGAGAACTGCTGCACTTCCAACATTCAGAAAGCTGTATGGTAGGATACACACTGACCTCAAGAAAGGTGACACCATTACGGTGACATTGGAGAACAACTACAA CACATATAGCTTTAGTGGCAAAAAGAAGTTGGTACTTTCTACCTCGACATGGCTCGGTGGAAAGAATGATTTTCTTGGTCTAGCATATCTCAGTGTTGGTGGACTCTGCTTCTTCCTGGCATTTGCATTCACCTTGCTGTACTTGATAAAACCAAGGAAAATGGGTGACAACAACTACTTGTCATGGAACAGAAACCCTGCAGGCCGTTAATAAGCTCTTCAAAC TTTAAGTTGCAAATTCAACATGAAGCAAGTTGGATTATGGATTCAAATGTATCTTGTACTAGATAGCGGTTTTATTTGTTAGCCGTGCTGGAGTGCCAATACGGCTTATACCAATTAGGGCAGCGTTTATGAGCAACACTGATGTACATTATGTTGCAAAGAAAAAAA TAGATATATACAGCCTTCTTTTGTTGAAAATTTTAAAaaaaaag                                               ]
[-] EMBL CB652310             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 TGTTCCTTGTGGTCTGATGNCATGGAGCATATTCAATGATACATATGGCTTTGTTCGCAACAGTAAGAACCTGCCAGTGGACAAGAAAAACATCTCTTGGAAGAGTGACAGGGAGCACAAATTTGGA CGTGAT GTCTTTCCAAAGAACTTCCAGAATGGTTCTCTTATAGGTGGAAAAACACTTGAT CCAAATAAATCGTTGAGTAAACAAGAAGACCTTATTGTTTGGATGAGAACTGCTGCACTTCCAACATTCAGAAAGCTGTATGGTAGGATACACACTGACCTCAAGAAAGGTGACACCATTACGGTGACATTGGAGAACAACTACAA CACATATAGCTTTAGTGGCAAAAAGAAGTTGGTACTTTCTACCTCGACATGGCTCGGTGGAAAGAATGATTTTCTTGGTCTAGCATATCTCAGTGTTGGTGGACTCTGCTTCTTCCTGGCATTTGCATTCACCTTGCTGTACTTGATAAAACCAAGGAAAATGGGTGACAACAACTACTTGTCATGGAACAGAAACCCTGCAGGCCGTTAATAAGCTCTTCAAACTTTTAAGTTGCAAATTCAACATGAAGCAAGTTGGATTATGGATTCAAATGTATCTTGTACTAGATAGCGGTTTTATTTGTTAGCCGTGCTGGAGTGCCAATACGGCTTATACCAATTAGGGCAGCGTTTATGAGCAACACTGATGTACATTATGTTGCAAAGAAAAATA TATATATATACAGCCTTCTTTTGTTGAAAATTTTAAATATCCCAGAAGTTAAATGGAATGATTTTTATAttgt                  ]
[+] EMBL OSC17963             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 TTGGAAGAGTGACAGGGAGCACAAATTTGGA CGTGAT GTCTTTCCAAAGAACTTCCAGAATGGTTCTCTTATAGGTGGAAAAACACTTGAT CCAAATAAATCGTTGAGTAAACAAGAAGACCTTATTGTTTGGATGAGAACTGCTGCACTTCCAACATTCAGAAAGCTGTATGGTAGGATACACACTGACCTCAAGAAAGGTGACACCATTACGGTGACATTGGAGANCANCTACAG CACATATAGCTTTAGTGGCANAAAGAAGTTGGTACTTTCTACCTCGACATGGCTCGGTG                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL AU100757             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        AATTTGGACCGTGATGGTCTTCCCAAAGAACTTCCAGAATGGTTCTCTTATAGGTGGAAAANCACTTGATCCCAAAT AATCGTTGAGT AACAAGAAGACCTTATTGTTTGGATGAGAACTGCTGCACTTCCAACATTCAGAAAGCTGTATGGTAGGATACACACTGACCTCAAGAAAGGTGACACCATTACGGTGACATTGGAGAACAACTACAA CACATATAGCTTTAGTGGCAAAAAGAAGTTGGTACTTTCTACCTCGACATGGCTCGGTGGAAAGAATGATTTTCTTGGTCTAGCATATCTCAGTGTTGGTGGACTCTGCTTCTTCCTGGCATTTGCATTCACCTTGCTGTACTTGATAAAACCAAGGAAAATGGGTGACAACAACTACTTGTCATGGAACAGAAACCCTGCAGGCCGTTAATAAGCTCTTCAAACTTTTAAGTTGCAAATTCAACATGAAGCAAGTTGGATTATGGATTCAAATGTATCTTGTACTAGATAGCGGTTTTATTTGTTAGCCGTGCTGGAGTGCCAATACGGCTTATACCAATTAGGGCAGCGTTTATGAGCAACACTGATGTACATTATGTTGCAAAGAAAAATA TATATATATACAGCCTTCTTTTGTTGAAAATTTTAAATATCCCAGAAGTTAAATGGAATGATTTTTAAAAAAAA                 ]
[-] EMBL CF313476             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    AACACTTGAT CCAAATAAATCGTTGAGTAAACAAGAAGACCTTATTGTTTGGATGAGAACTGCTGCACTTCCAACATTCAGAAAGCTGTATGGTAGGATACACACTGACCTCAAGAAAGGTGACACCATTACGGTGACATTGGAGAACAACTACAANCACATATAGCTTTAGTGGCAAAAAGAAGTTGGTACTTTCTACCTCGACATGGCTCGGTGGAAAGAATGATTTTCTTGGTCTAGCATATCTCAGTGTTGGTGGACTCTGCTTCTTCCTGGCATTTGCATTCACCTTGCTGTACTTGATAAAACCAAGGAAAATGGGTGACAACAACTACTTGTCATGGAACAGAAACCCTGCAGGCCGTTAATAAGCTCTTCAAACTTTTAAGTTGCAAATTCAACATGAAGCAAGTTGGATTATGGATTCAAATGTATCTTGTACTAGATAGCGGTTTTATTTGTTAGCCGTGCTGGAGTGCCAATACGGCTTATACCAATTAGGGCAGCGTTTATGAGCAACACTGATGTACATTATGTTGCAAAGAAAAATATTATATATATACAGCCTTCTTTTGTTGAAAATTTTAAATATCCCAGAAGTTAAATGGAATGATTTTTAAAAAAAAA                ]
[+] EMBL C98341               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    AACATGAAGCAAGTTGGATTATGGATTCAAATGTATCTTGTACTAGATAGCGGTTTTATTTGTTAGCCGTGCTGGAGTGCCAATACGGCTTATACCAATTAGGGCAGCGTTTATGAGCAACACTGATGTACATTATGTTGCAAAGAAAAATA TATATATATACAGCCTTCTTTTGTTGAAAATTTTAAATATCCCAGAAGTTAAATGGAATGATTTTTATAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_14077#0
TCAAGAAGAAAAATAATTAATTACTCGCAGCAAAGGACGGACAGTTTCCTGCGCAAATTC
CACGTTCCACCTTCCTCTTCGGTCGTCTCCGCCGGCTTGGAGTTGGGAGAAGAAGCTCAA
ACGCGGAGGCCACCACGACCACCACAACACCACCACCTCTTCTCCTAGTCAAACCCACCC
TTCCCTTGTAATCTTCGCAACAACAGCAGGACGGCAAGTTCGTAGCTTTCCCCTCCGCTT
TATACACCCGCATCTCCAAATCTGAGGAGAGAGGGGAGAAGATAAAGAAAGAAAAGCGCG
CATTTTGGTGTCCGGGGAAGGGAAAAGGGCGGTTCTTGGCGTCGGTGGCGGGTTTTGTTT
TTTGGGGGTGGAAGCGGTTGGTTTGGGGATGAGCAGCGGCCAGGAAGCCGGATCGAGCTC
CGGTGGATCCGGCGATGGCGGCGCGGCGGCGCCCAGGAGGAACACCAGGAAGCCCAAGTA
TTCCAAGTTTACTCAGCAGGAGCTCCCAGCTTGCAAGCCGATTCTTACTCCAAAATGGGT
CATTTCAGTTTTCGTTCTTGTCGGAGTCATTTTTGTCCCAATCGGGCTTGTTTCGTTGAA
GGCTTCACGAAAGGTTGTTGAGATTGTTGATCGATACGATGATGCATGTGTCCCAGCTAA
TACAACTGACAAGCTTGCTTACATCCAGAACCCAACAATAAGCAAAAACTGCAGAAGGAC
TCTTAAGGTTCCAAAGGATATGGATGCACCAATCTTTGTGTATTACCAGCTGGATAACTT
TTATCAGAATCATAGGAGATATGTCAAGAGCCGGAGTGATGCACAGCTAAGAGATCCCAA
AAAGGCAAATGACACCTCCACTTGTGATCCCGAGGGTACAGCAAATGGAATGGCAATTGT
TCCTTGTGGTCTGATTGCATGGAGCATATTCAATGATACATATGGCTTTGTTCGCAACAG
TAAGAACCTGCCAGTGGACAAGAAAAACATCTCTTGGAAGAGTGACAGGGAGCACAAATT
TGGACGTGATGTCTTTCCAAAGAACTTCCAGAATGGTTCTCTTATAGGTGGAAAAACACT
TGATCCAAATAAATCGTTGAGTAAACAAGAAGACCTTATTGTTTGGATGAGAACTGCTGC
ACTTCCAACATTCAGAAAGCTGTATGGTAGGATACACACTGACCTCAAGAAAGGTGACAC
CATTACGGTGACATTGGAGAACAACTACAACACATATAGCTTTAGTGGCAAAAAGAAGTT
GGTACTTTCTACCTCGACATGGCTCGGTGGAAAGAATGATTTTCTTGGTCTAGCATATCT
CAGTGTTGGTGGACTCTGCTTCTTCCTGGCATTTGCATTCACCTTGCTGTACTTGATAAA
ACCAAGGAAAATGGGTGACAACAACTACTTGTCATGGAACAGAAACCCTGCAGGCCGTTA
ATAAGCTCTTCAAACTTTTAAGTTGCAAATTCAACATGAAGCAAGTTGGATTATGGATTC
AAATGTATCTTGTACTAGATAGCGGTTTTATTTGTTAGCCGTGCTGGAGTGCCAATACGG
CTTATACCAATTAGGGCAGCGTTTATGAGCAACACTGATGTACATTATGTTGCAAAGAAA
AATATATATATATACAGCCTTCTTTTGTTGAAAATTTTAAATATCCCAGAAGTTAAATGG
AATGATTTTTATAAAAAAAAAAAAAAAAAAAAAAA

consensusID : consensus_14077#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 646
fasta sequence

                              [CGAGACAAGGGGGGGAGCACAAATTTGGACGTGATGTCTTTCCAAAGAACTTCCAGAATGGTTCTCTTATAGGTGGAAAAACACTTGATCCAAATAAATCGTTGAGTGAACAAGAAGACCTTATTGTTTGGATGAGAACTGCTGCACTTCCAACATTCAGAAAGCTGTATGGTAGGATACACACTGACCTCAAGAAAGGTGACACCATTACGGTGACATTGGAGAACAACTACAACACATATAGCTTTAGTAGCAAAAAGAAGTTGGTACTTTCTACCTCGACATGGCTCGGTGGAAAGAATGATTTTCTTGGTCTAGCATATCTCAGTGTTGGTGGACTCTGCTTCTTCCTGGCATTTGCATTCACCTTGCTGTACTTGATAAAACCAAGGAAAATGGGTGACAACAACTACTTGTCATGGAACAGAAACCCTGCAGGCCGTT-AATAAG-CTCTTCAAACTT-TAAGT-TGCAAATTCAACATGAAGCAAGTTGGATTATGGATTCAAATGTATCTTGTACTAGATAGCGGTTTTATTTGTTAGCCGTGCTGGAGTGCCAATACGGC-TTATACCAATTAGGGCAGCGTTTATGAGCAACACTGATGTACATTATGTTGCAAAGAAAAAAAAATATATACAGCCTTCTT]

[+] EMBL CA767211             [CGAGACAAGGGGGGGAGCACAAATTTGGACGTGATGTCTTTCCAAAGAACTTCCAGAATGGTTCTCTTATAGGTGGAAAAACACTTGATCCAAATAAATCGTTGAGTGAACAAGAAGACCTTATTGTTTGGATGAGAACTGCTGCACTTCCAACATTCAGAAAGCTGTATGGTAGGATACACACTGACCTCAAGAAAGGTGACACCATTACGGTGACATTGGAGAACAACTACAACACATATAGCTTTAGTAGCAAAAAGAAGTTGGTACTTTCTACCTCGACATGGCTCGGTGGAAAGAATGATTTTCTTGGTCTAGCATATCTCAGTGTTGGTGGACTCTGCTTCTTCCTGGCATTTGCATTCACCTTGCTGTACTTGATAAAACCAAGGAAAATGGGTGACAACAACTACTTGTCATGGAACAGAAACCCTGCAGGCCGTT AATAAG CTCTTCAAACTT TAAGT TGCAAATTCAACATGAAGCAAGTTGGATTATGGATTCAAATGTATCTTGTACTAGATAGCGGTTTTATTTGTTAGCCGTGCTGGAGTGCCAATACGGC TTATACCAATTAGGGCAGCGTTTATGAGCAACACTGATGTACATTATGTTGCAAAGAAAAAAAAATATATACAGCCTTCTT]
[+] EMBL BI809402             [                                                                                                                                                                                                                                                                                                                                                                                                                                 CATGGAACAGAAACCCTGCA GCCGTTGAATAAGCCTCTTCAAACTTGTAAGTGTGCAAATTCAACATGAAGCAAGTTGGATTATGGATTCAAATGTATCTTGTACTAGATAGCGTTGTTATTTGTTA CCGTGCTGGAGT CCAATACGGCATTATACCAATTAGGGCAGCGTTTATGAGCAACACTGATGTACATTATGTTGCAAAG AAAAAAAATATAT           ]




>consensus_14077#1
CGAGACAAGGGGGGGAGCACAAATTTGGACGTGATGTCTTTCCAAAGAACTTCCAGAATG
GTTCTCTTATAGGTGGAAAAACACTTGATCCAAATAAATCGTTGAGTGAACAAGAAGACC
TTATTGTTTGGATGAGAACTGCTGCACTTCCAACATTCAGAAAGCTGTATGGTAGGATAC
ACACTGACCTCAAGAAAGGTGACACCATTACGGTGACATTGGAGAACAACTACAACACAT
ATAGCTTTAGTAGCAAAAAGAAGTTGGTACTTTCTACCTCGACATGGCTCGGTGGAAAGA
ATGATTTTCTTGGTCTAGCATATCTCAGTGTTGGTGGACTCTGCTTCTTCCTGGCATTTG
CATTCACCTTGCTGTACTTGATAAAACCAAGGAAAATGGGTGACAACAACTACTTGTCAT
GGAACAGAAACCCTGCAGGCCGTTAATAAGCTCTTCAAACTTTAAGTTGCAAATTCAACA
TGAAGCAAGTTGGATTATGGATTCAAATGTATCTTGTACTAGATAGCGGTTTTATTTGTT
AGCCGTGCTGGAGTGCCAATACGGCTTATACCAATTAGGGCAGCGTTTATGAGCAACACT
GATGTACATTATGTTGCAAAGAAAAAAAAATATATACAGCCTTCTT

consensusID : consensus_14077#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 264
fasta sequence

                              [CCTCAGCCCGTTAATAAGCTCTTCAAACTTTAATTCCAAATTCAACATGAACACAGTTGGATTATGGATTCAAATGTATCTTGTACTAGATACGTTTTATTTGTTACCTGCCTGGAGTCCCCATACGGCTTATACCACATTAGGCAGCGTTTATGACACACACTGATGTACATTATGTTCACAAGAAAAAAAAATATATCACACCCTTCTTTTGTTGAAAATTTTAAATATCCCAGAAGTTAAATGGAATGATTTTTATAAAAA]

[+] EMBL BI800800             [CCTCAGCCCGTTAATAAGCTCTTCAAACTTTAATTCCAAATTCAACATGAACACAGTTGGATTATGGATTCAAATGTATCTTGTACTAGATACGTTTTATTTGTTACCTGCCTGGAGTCCCCATACGGCTTATACCACATTAGGCAGCGTTTATGACACACACTGATGTACATTATGTTCACAAGAAAAAAAAATATATCACACCCTTCTTTTGTTGAAAATTTTAAATATCCCAGAAGTTAAATGGAATGATTTTTATAAAAA]




>consensus_14077#2
CCTCAGCCCGTTAATAAGCTCTTCAAACTTTAATTCCAAATTCAACATGAACACAGTTGG
ATTATGGATTCAAATGTATCTTGTACTAGATACGTTTTATTTGTTACCTGCCTGGAGTCC
CCATACGGCTTATACCACATTAGGCAGCGTTTATGACACACACTGATGTACATTATGTTC
ACAAGAAAAAAAAATATATCACACCCTTCTTTTGTTGAAAATTTTAAATATCCCAGAAGT
TAAATGGAATGATTTTTATAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_14077#0      TCAAGAAGAAAAATAATTAATTACTCGCAGCAAAGGACGGACAGTTTCCTGCGCAAATTC 60
consensus_14077#1      ------------------------------------------------------------
consensus_14077#2      ------------------------------------------------------------
                                                                                   

consensus_14077#0      CACGTTCCACCTTCCTCTTCGGTCGTCTCCGCCGGCTTGGAGTTGGGAGAAGAAGCTCAA 120
consensus_14077#1      ------------------------------------------------------------
consensus_14077#2      ------------------------------------------------------------
                                                                                   

consensus_14077#0      ACGCGGAGGCCACCACGACCACCACAACACCACCACCTCTTCTCCTAGTCAAACCCACCC 180
consensus_14077#1      ------------------------------------------------------------
consensus_14077#2      ------------------------------------------------------------
                                                                                   

consensus_14077#0      TTCCCTTGTAATCTTCGCAACAACAGCAGGACGGCAAGTTCGTAGCTTTCCCCTCCGCTT 240
consensus_14077#1      ------------------------------------------------------------
consensus_14077#2      ------------------------------------------------------------
                                                                                   

consensus_14077#0      TATACACCCGCATCTCCAAATCTGAGGAGAGAGGGGAGAAGATAAAGAAAGAAAAGCGCG 300
consensus_14077#1      ------------------------------------------------------------
consensus_14077#2      ------------------------------------------------------------
                                                                                   

consensus_14077#0      CATTTTGGTGTCCGGGGAAGGGAAAAGGGCGGTTCTTGGCGTCGGTGGCGGGTTTTGTTT 360
consensus_14077#1      ------------------------------------------------------------
consensus_14077#2      ------------------------------------------------------------
                                                                                   

consensus_14077#0      TTTGGGGGTGGAAGCGGTTGGTTTGGGGATGAGCAGCGGCCAGGAAGCCGGATCGAGCTC 420
consensus_14077#1      ------------------------------------------------------------
consensus_14077#2      ------------------------------------------------------------
                                                                                   

consensus_14077#0      CGGTGGATCCGGCGATGGCGGCGCGGCGGCGCCCAGGAGGAACACCAGGAAGCCCAAGTA 480
consensus_14077#1      ------------------------------------------------------------
consensus_14077#2      ------------------------------------------------------------
                                                                                   

consensus_14077#0      TTCCAAGTTTACTCAGCAGGAGCTCCCAGCTTGCAAGCCGATTCTTACTCCAAAATGGGT 540
consensus_14077#1      ------------------------------------------------------------
consensus_14077#2      ------------------------------------------------------------
                                                                                   

consensus_14077#0      CATTTCAGTTTTCGTTCTTGTCGGAGTCATTTTTGTCCCAATCGGGCTTGTTTCGTTGAA 600
consensus_14077#1      ------------------------------------------------------------
consensus_14077#2      ------------------------------------------------------------
                                                                                   

consensus_14077#0      GGCTTCACGAAAGGTTGTTGAGATTGTTGATCGATACGATGATGCATGTGTCCCAGCTAA 660
consensus_14077#1      ------------------------------------------------------------
consensus_14077#2      ------------------------------------------------------------
                                                                                   

consensus_14077#0      TACAACTGACAAGCTTGCTTACATCCAGAACCCAACAATAAGCAAAAACTGCAGAAGGAC 720
consensus_14077#1      ------------------------------------------------------------
consensus_14077#2      ------------------------------------------------------------
                                                                                   

consensus_14077#0      TCTTAAGGTTCCAAAGGATATGGATGCACCAATCTTTGTGTATTACCAGCTGGATAACTT 780
consensus_14077#1      ------------------------------------------------------------
consensus_14077#2      ------------------------------------------------------------
                                                                                   

consensus_14077#0      TTATCAGAATCATAGGAGATATGTCAAGAGCCGGAGTGATGCACAGCTAAGAGATCCCAA 840
consensus_14077#1      ------------------------------------------------------------
consensus_14077#2      ------------------------------------------------------------
                                                                                   

consensus_14077#0      AAAGGCAAATGACACCTCCACTTGTGATCCCGAGGGTACAGCAAATGGAATGGCAATTGT 900
consensus_14077#1      ------------------------------------------------------------
consensus_14077#2      ------------------------------------------------------------
                                                                                   

consensus_14077#0      TCCTTGTGGTCTGATTGCATGGAGCATATTCAATGATACATATGGCTTTGTTCGCAACAG 960
consensus_14077#1      ------------------------------------------------------------
consensus_14077#2      ------------------------------------------------------------
                                                                                   

consensus_14077#0      TAAGAACCTGCCAGTGGACAAGAAAAACATCTCTTGGAAGAGTGACAGGGAGCACAAATT 1020
consensus_14077#1      -----------------------------------CGAGACAAGGGGGGGAGCACAAATT 25
consensus_14077#2      ------------------------------------------------------------
                                                                                   

consensus_14077#0      TGGACGTGATGTCTTTCCAAAGAACTTCCAGAATGGTTCTCTTATAGGTGGAAAAACACT 1080
consensus_14077#1      TGGACGTGATGTCTTTCCAAAGAACTTCCAGAATGGTTCTCTTATAGGTGGAAAAACACT 85
consensus_14077#2      ------------------------------------------------------------
                                                                                   

consensus_14077#0      TGATCCAAATAAATCGTTGAGTAAACAAGAAGACCTTATTGTTTGGATGAGAACTGCTGC 1140
consensus_14077#1      TGATCCAAATAAATCGTTGAGTGAACAAGAAGACCTTATTGTTTGGATGAGAACTGCTGC 145
consensus_14077#2      ------------------------------------------------------------
                                                                                   

consensus_14077#0      ACTTCCAACATTCAGAAAGCTGTATGGTAGGATACACACTGACCTCAAGAAAGGTGACAC 1200
consensus_14077#1      ACTTCCAACATTCAGAAAGCTGTATGGTAGGATACACACTGACCTCAAGAAAGGTGACAC 205
consensus_14077#2      ------------------------------------------------------------
                                                                                   

consensus_14077#0      CATTACGGTGACATTGGAGAACAACTACAACACATATAGCTTTAGTGGCAAAAAGAAGTT 1260
consensus_14077#1      CATTACGGTGACATTGGAGAACAACTACAACACATATAGCTTTAGTAGCAAAAAGAAGTT 265
consensus_14077#2      ------------------------------------------------------------
                                                                                   

consensus_14077#0      GGTACTTTCTACCTCGACATGGCTCGGTGGAAAGAATGATTTTCTTGGTCTAGCATATCT 1320
consensus_14077#1      GGTACTTTCTACCTCGACATGGCTCGGTGGAAAGAATGATTTTCTTGGTCTAGCATATCT 325
consensus_14077#2      ------------------------------------------------------------
                                                                                   

consensus_14077#0      CAGTGTTGGTGGACTCTGCTTCTTCCTGGCATTTGCATTCACCTTGCTGTACTTGATAAA 1380
consensus_14077#1      CAGTGTTGGTGGACTCTGCTTCTTCCTGGCATTTGCATTCACCTTGCTGTACTTGATAAA 385
consensus_14077#2      ------------------------------------------------------------
                                                                                   

consensus_14077#0      ACCAAGGAAAATGGGTGACAACAACTACTTGTCATGGAACAGAAACCCTGCAGGCCGTTA 1440
consensus_14077#1      ACCAAGGAAAATGGGTGACAACAACTACTTGTCATGGAACAGAAACCCTGCAGGCCGTTA 445
consensus_14077#2      -----------------------------------------------CCTCAGCCCGTTA 13
                                                                      *  *** ******

consensus_14077#0      ATAAGCTCTTCAAACTTTTAAGTTGCAAATTCAACATGAAGCAAGTTGGATTATGGATTC 1500
consensus_14077#1      ATAAGCTCTTCAAACTTT-AAGTTGCAAATTCAACATGAAGCAAGTTGGATTATGGATTC 504
consensus_14077#2      ATAAGCTCTTCAAACTTT--AATTCCAAATTCAACATGAACACAGTTGGATTATGGATTC 71
                       ******************  * ** ***************   *****************

consensus_14077#0      AAATGTATCTTGTACTAGATAGCGGTTTTATTTGTTAGCCGTGCTGGAGTGCCAATACGG 1560
consensus_14077#1      AAATGTATCTTGTACTAGATAGCGGTTTTATTTGTTAGCCGTGCTGGAGTGCCAATACGG 564
consensus_14077#2      AAATGTATCTTGTACTAGATAC--GTTTTATTTGTTACCTGC-CTGGAGTCCCCATACGG 128
                       *********************   ************* * *  ******* ** ******

consensus_14077#0      CTTATACCAATTAGGGCAGCGTTTATGAGCAACACTGATGTACATTATGTTGCAAAGAAA 1620
consensus_14077#1      CTTATACCAATTAGGGCAGCGTTTATGAGCAACACTGATGTACATTATGTTGCAAAGAAA 624
consensus_14077#2      CTTATACCACATTAGGCAGCGTTTATGACACACACTGATGTACATTATGTTCACAAGAAA 188
                       *********  *  **************   ********************   ******

consensus_14077#0      AATATATATATATACAGCCTTCTTTTGTTGAAAATTTTAAATATCCCAGAAGTTAAATGG 1680
consensus_14077#1      AAAAAATATATA--CAGCCTTCTT------------------------------------ 646
consensus_14077#2      AAAAAATATATC-ACACCCTTCTTTTGTTGAAAATTTTAAATATCCCAGAAGTTAAATGG 247
                       ** * ******   ** *******                                    

consensus_14077#0      AATGATTTTTATAAAAAAAAAAAAAAAAAAAAAAA 1715
consensus_14077#1      -----------------------------------
consensus_14077#2      AATGATTTTTATAAAAA------------------ 264