cluster # 14079

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Oryza sativa
cluster # 14079 cluster # 14079 Sequences # 15 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_14079#0 length = 972 sequences # 12
consensus_14079#1 length = 807 sequences # 1

consensus_14079#2 length = 413 sequences # 1
consensus_14079#3 length = 300 sequences # 1

consensusID : consensus_14079#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 12
consensus length = 972
fasta sequence

                              [ATGGACTGAAGGAGTAGAAA--AACTCAACCAGCTGCCCTCCCAAATTTCTCTCCTCTTGCCGACGACTCGGAAAAAAACCGCGGACACCGCGTCCGCTCGACGGAGGGAAGGGGATGAGCTCCTCGTCGGCGTCGGCTGTGCCGCCGGAGGACGACGTCTGCTCGGTCTGCCACGACCGCTTCCGGATCCCCTGCCAGGCCAACTGCTCCCATTGGTTCTGCGGAGAGTGCATTATCCGTGTTTGGAATCATGGACCTTCTGTACAGCCTTGCAAGTGTCCCATTTGCCGTCGCCTTATTAATCTTCTGGTACCAGCAAATGTATCAATAGATAATGATGATGATCCGCAAATTCAGCATGT-TCTAGGAGAGGTTCAGCATTACAACCGCATATT-TGGTGGAACACCCCGCAACCTGACTCAGAGGTTGCAAGACCTACCCTTTTTCATCAGAAGACTGTTCAGGGAACTACTGGATCCCCAGAGGACCCT-CC-CACTTGTCTTCAGGGC-GAGGATGGTCATGATGGTAGCCCTGAGTGCAATTTATGTCCTGAGCCCCATCGACATTCTTCCTGAAAACGTGCTGGGG-CTGTTTGGATTCTTCGATGACTTC-CTCGTG-CTGCTGATCGTGTTCCTCCACCTTGCTGCTGTCTACCGTTCTCTGCTGCTCTACCGCCACGGAGGCCACTGAATTGCTGCTGCACATTACGTGATGGCAGATGGAGTACTTGCGTCCCTGGCTGACGTTCTGAGACAAGAGATATTTCATTTGTGCTGGAAGAGATTGCTAGCTAAAGTCGATGATGATTGATGGTACGAATGATGGCGGCAGTAGTTTCTCTCCCCCTGTGTATTCTATTTCGCTATGCTATG-CCTTGTTTGGTGATATTCACA-TGGTGGATTTAATGAGACCGATTGCTTTTTCTTTAGTTTGATATATATACTCACACGAGATTAGCAAATA---AAAAAAAAAA]

[+] EMBL CF318989             [ATGGACTGAAGGAGTAGAAA  AACTCAACCAGCTGCCCTCCCAAATTTCTCTCCTCTTGCCGACGACTCGGAAAAAAACCGCGGACACCGCGTCCGCTCGACGGAGGGAAGGGGATGAGCTCCTCGTCGGCGTCGGCTGTGCCGCCGGAGGACGACGTCTGCTCGGTCTGCCACGACCGCTTCCGGATCCCCTGCCAGGCCAACTGCTCCCATTGGTTCTGCGGAGAGTGCATTATCCGTGTTTGGAATCATGGACCTTCTGTACAGCCTTGCAAGTGTCCCATTTGCCGTCGCCTTATTAATCTTCTGGTACCAGCAAATGTATCAATAGATAATGATGATGATCCGCAAATTCAGCATGT TCTAGGAGAGGTTCAGCATTACAACCGCATATT TGGTGGAACACCCCGCAACCTGACTCAGAGGTTGCAAGACCTACCCTTTTTCATCAGAAGACTGTTCAGGGAACTACTGGATCCCCAGAGGACCCT CC CACTTGTCTTCAGGGC GAGGATGGTCATGATGGTAGCCCTGAGTGCAATTTATGTCCTGAGCCCCATCGACATTCTTCCTGAAAACGTGCTGGGG CT                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CF334026             [           GAGTAGAAA  AACTCAACCAGCTGCCCTCCCAAATTTCTCTCCTCTTGCCGACGACTCGGAAAAAAACCGCGGACACCGCGTCCGCTCGACGGAGGGAAGGGGATGAGCTCCTCGTCGGCGTCGGCTGTGCCGCCGGAGGACGACGTCTGCTCGGTCTGCCACGACCGCTTCCGGATCCTCTGCCAGGCCAACTGCTCCCATTGGTTCTGCGGAGAGTGCATTATCCGTGTTTGCTATCATGGACCTTCTGTACAGCCTTGCAAGTGTCCCATTTGCCGTCGCCTTATTAATCTTCTGGTACCAGCAAATGTATCAATAGATAATGATGATGATCCGCAAATTCAGCATGT TCTAGGAGAGGTTCAGCATTACAACCGCATATT TGGTGGAACACCCCGCAACCTGACTCAGAGGTTGCAAGACCTACCCTTTTTCATCAGAAGACTGTTCAGGGAACTACTGGATCCCCAGAGGACCCT CC CACTTGTCTTCAGGGC GAGGATGGTCATGATGGTAGCCCTGAGTGCAATTTATGTCCTGAGCCCCATCGAC                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CB621473             [              aAGAAAGCAACTCAACCAGCTGCCCTCCCAAATTTCTCTCCTCTTGCCGACGACTCGGAAAAAAACCGCGGACACCGCGTCCGCTCGACGGAGGGAAGGGGATGAGCTCCTCGTCGGCGTCGGCTGTGCCGCCGGAGGACGACGTCTGCTCGGTCTGCCACGACCGCTTCCGGATCCCCTGCCAGGCCAACTGCTCCCATTGGTTCTGCGGAGAGTGCATTATCCGTGTTTGGAATCATGGACCTGCTGTACAGCCTTGCAAGTGTCCCATTTGCCGTCGCCTTATTAATCTTCTGGTACCAGCAAATGTATCAATAGATAATGATGATGATCCGCAAATTCAGCATGT TCTAGGAGAGGTTCAGCATTACAACCGCATATT TGGTGGAACACCCCGCAACCTGACTCAGAGGTTGCAAGACCTACCCTTTTTCATCAGAAGACTGTTCAGGGAACTACTGGATCCCCAGAGGACCCT CC CACTTGTCTTCAGGGC GAGGATGGTCATGATGGTAGCCCTGAGTGCAATTTATGTCCTGAGCCCCATCGACATTCTTCCTGAAAACGTGCTGGGG CTGTTTGGATTCTTCGATGACTTC CTCGTG CTGCTGATCGTGTTCCTCCACCTTGCTGCTGTCTACCGTTCTCTGCTGCTCTACCGCCACGGAGGCCACTGAATTGCTGCTGCACATTACGTGATGGCAGATGGAGTACTTGCGTCCCTGGCTGACGTTCTGAGACAAGAGATATTTCACTTGTGCTGGAAGAGATTGCTAGCTAAAGTCGATGATGATTGATGG     ATGTTGGCGaaa                                                                                                                                                    ]
[+] EMBL CF311543             [                              CAGCTGCCCTCCCAAATTTCTCTCCTCTTGCCGACGACTCGGAAAAAAACCGCGGACACCGCGTCCGCTCGACGGAGGGAAGGGGATGAGCTCCTCGTCGGCGTCGGCTGTGCCGCCGGAGGACGACGTCTGCTCGGTCTGCCACGACCGCTTCCGGATCCCCTGCCAGGCCAACTGCTCCCATTGGTTCTGCGGAGAGTGCATTATCCGTGTTTGGAATCATGGACCTTCTGTACAGCCTTGCAAGTGTCCCATTTGCCGTCGCCTTATTAATCCTCTGGTACCAGCAAATGTATCAATAGATAATGATGATGATCCGCAAATTCAGCATGTNTCTAGGAGAGGTTCAGCATTACAACCGCATATTNTGGTGGAACACCCCGCAACCTGACTCAGAGGTTGCAAGACCTACCCTTTTTCATCAGAAGACTGTTCAGGGAACTACTGGATCCCCAGAGGACCCT CC CACTTGTCTTCAGGGCNGAGGATGGTCATGATGGTAGCCCTGAGTGCAATTTATGTCCTGAGCCCCATCGACATTCTTCCTGAAAACGTGCTGGGGCCTGTTTGGATTCTTCGATGACTTC CTCGTGCCTGCTGATCGTGTTCCTCCACCTTGCTGCTGTCTACCGTTCTCTG                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CF294844             [                                          CAAATTTCTCTCCTCTTGCTGACGACTCGGAAAAAAACCGCGGACACCGCGTCCGCTCGACGGAGGGAAGGGGATGAGCTCCTCGTCGGCGTCGGCTGTGCCGCCGGAGGACGACGTCTGCTCGGTCTGCCACGACCGCTTCCGGATCCCCTGCCAGGCCAACTGCTCCCATTGGTTCTGCGGAGAGTGCATTATCCGTGTTTGGAATCATGGACCTTCTGTACAGCCTTGCAAGTGTCCCATTTGCCGTCGCCTTATTAATCTTCTGGTACCAGCAAATGTATCAATAGATAATGATGATGATCCGCAAATTCAGCATGT TCTAGGAGAGGTTCAGCATTACAACCGCATATT TGGTGGAACACCCCGCAACCTGACTCAGAGGTTGCAAGACCTACCCTTTTTCATCAGAAGACTGTTCAGGGAACTACTGGATCCCCAGAGGACCCT CC CACTTGTCTTCAGGGC GAGGATGGTCATGATGGTAGCCCTGAGTGGCATTTATGTCCTGAGCCCCATCGACATTCTTCCT                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL AK070115             [                                                              GACGACTCGGAAAAAAACCGCGGACACCGCGTCCGCTCGACGGAGGGAAGGGGATGAGCTCCTCGTCGGCGTCGGCTGTGCCGCCGGAGGACGACGTCTGCTCGGTCTGCCACGACCGCTTCCGGATCCCCTGCCAGGCCAACTGCTCCCATTGGTTCTGCGGAGAGTGCATTATCCGTGTTTGGAATCATGGACCTTCTGTACAGCCTTGCAAGTGTCCCATTTGCCGTCGCCTTATTAATCTTCTGGTACCAGCAAATGTATCAATAGATAATGATGATGATCCGCAAATTCAGCATGT TCTAGGAGAGGTTCAGCATTACAACCGCATATT TGGTGGAACACCCCGCAACCTGACTCAGAGGTTGCAAGACCTACCCTTTTTCATCAGAAGACTGTTCAGGGAACTACTGGATCCCCAGAGGACCCT CC CACTTGTCTTCAGGGC GAGGATGGTCATGATGGTAGCCCTGAGTGCAATTTATGTCCTGAGCCCCATCGACATTCTTCCTGAAAACGTGCTGGGG CTGTTTGGATTCTTCGATGACTTC CTCGTG CTGCTGATCGTGTTCCTCCACCTTGCTGCTGTCTACCGTTCTCTGCTGCTCTACCGCCACGGAGGCCACTGAATTGCTGCTGCACATTACGTGATGGCAGATGGAGTACTTGCGTCCCTGGCTGACGTTCTGAGACAAGAGATATTTCATTTGTGCTGGAAGAGATTGCTAGCTAAAGTCGATGATGATTGATGGTACGAATGATGGCGGCAGTAGTTTCTCTCCCCCTGTGTATTCTATTTCGCTATGCTATG CCTTGTTTGGTGATATTCACA TGGTGGATT                                                                          ]
[+] EMBL CA758673             [                                                                               CCGCGGACACCGCGTCCGCTCGACGGAGGGAAGGGGATGAGCTCCTCGTCGGCGTCGGCTGTGCCGCCGGAGGACGACGTCTGCTCGGTCTGCCACGACCGCTTCCGGATCCCCTGCCAGGCCAACTGCTCCCATTGGTTCTGCGGAGAGTGCATTATCCGTGTTTGGAATCATGGACCTGCTGTACAGCCTTGCAAGTGTCCCATTTGCCGTCGCCTTATTAATCTTCTGGTACC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[-] EMBL CF334027             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                     AGAAGACTGTTCAGGGAACTACTGGATCCCCAGAGGACCCT CCNCACTTGTCTTCAGGGC GAGGATGGTCATGATGGTAGCCCTGAGTGCAATTTATGTCCTGAGCCCCATCGACATTCTTCCTGAAAACGTGCTGGGG CTGTTTGGATTCTTCGATGACTTC CTCGTG CTGCTGATCGTGTTCCTCCACCTTGCTGCTGTCTACCGTTCTCTGCTGCTCTACCGCCACGGAGGCCACTGAATTGCTGCTGCACATTACGTGATGGCAGATGGAGTACTTGCGTCCCTGGCTGACGTTCTGAGACAAGAGATATTTCATTTGTGCTGGAAGAGATTGCTAGCTAAAGTCGATGATGATTGATGGTACGAATGATGGCGGCAGTAGTTTCTCTCCCCCTGTGTATTCTATTTCGCTATGCTATG CCTTGTTTGGTGATATTCACA TGGTGGATTTAATGAGACCGATTGCTTTTTCTTTAGTTTGATATATATACTCACACGAGATTAGCAAATA   AAAAAA    ]
[-] EMBL CF294843             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                     AGAAGACTGTTCAGGGAACTACTGGATCCCCAGAGGACCCT CC CACTTGTCTTCAGGGC GAGGATGGTCATGATGGTAGCCCTGAGTGCAATTTATGTCTTGAGCCCCATCGACATTCTTCTTGAAAACGTGCTGGGG CTGTTTGGATTCTTCGATGACTTC CTCGTG CTGCTGATCGTGTTCCTCCACCTTGCTGCTGTCTACCGTTCTCTGCTGCTCTACCGCCACGGAGGCCACTGAATTGCTGCTGCACATTACGTGATGGCAGATGGAGTACTTGCGTCCCTGGCTGACGTTTTGAGACAAGAGATATTTCATTTGTGCTGGAAGAGATTGCTAGCTAAAGTCGATGATGATTGATGGTACGAATGATGGCGGCAGTAGTTTCTCTCCCCCTGTGTATTCTATTTCGCTATGCTATG CCTTGTTTGGTGATATTCACA TGGTGGATTTAATGAGACCGATTGCTTTTTCTTTAGTTTGATATATATACTCACACCCCATTAGCAAATA   GCAAA     ]
[-] EMBL CF318990             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                        AGACTGTTCAGGGAACTACTGGATCCCCAGAGGACCCTCCC CACTTGTCTTCAGGGC GAGGATGGTCATGATGGTAGCCCTGAGTGCAATTTATGTCCTGAGCCCCATCGACATTCTTCCTGAAAACGTGCTGGGG CTGTTTGGATTCTTCGATGACTTC CTCGTG CTGCTGATCGTGTTCCTCCACCTTGCTGCTGTCTACCGTTCTCTGCTGCTCTACCGCCACGGAGGCCACTGAATTGCTGCTGCACATTACGTGATGGCAGATGGAGTACTTGCGTCCCTGGCTGACGTTCTGAGACAAGAGATATTTCATTTGTGCTGGAAGAGATTGCTAGCTAAAGTCGATGATGATTGATGGTACGAATGATGGCGGCAGTAGTTTCTCTCCCCCTGTGTATTCTATTTCGCTATGCTATG CCTTGTTTGGTGATATTCACA TGGTGGATTTAATGAGACCGATTGCTTTTTCTTTAGTTTGATATATATACTCAaaaaaa                        ]
[-] EMBL CF311542             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GATGGTCATGATGGTAGCCCTGAGTGCAATTTATGTCTTGAGCCCCATCGACATTCTTCCTGAAAACGTGCTGGGG CTGTTTGGATTCTTCGATGACTTCTCTCGTG CTGCTGATCGTGTTCCTCCACCTTGCTGCTGTCTACCGTTCTCTGCTGCTCTACCGCCACGGAGGCCACTGAATTGCTGCTGCACATTACGTGATGGCAGATGGAGTACTTGCGTCCCTGGCTGACGTTTTGAGACAAGAGATATTTCATTTGTGCTGGAAGAGATTGCTAGCTAAAGTCGATGATGATTGATGGTACGAATGATGGCGGCAGTAGTTTCTCTCCCCCTGTGTATTCTATTTCGCTATGCTATG CCTTGTTTGGTGATATTCACA TGGTGGATTTAATGAGACCGATTGCTTTTTCTTTAGTTTGATATATATACTCACACGAGATTAGCAAATA   GCAAAAAAAA]
[+] EMBL BI812552             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  GGCCCCTGAATTGCTGCTGCACCTTACGTGATGGCAGATGGAGTACTTGCGTCCCTGGCTGACGTTCTGAGACCAGAGATATTTCATTTGTGCTGGAAGAGATTGCTAGCTAAAGTCGATGATGATTGATGGTACGAATGATGGCGGCCGTAGTTTCTCTCCCCCTGTGTATTCTATTTCGCTATGCTATGCCCTTGTTTGGTGATATTCACACTGGTGGATTTAATGAGACCGATTGCTTTTTCTTTAGTTTGATATATATACTCACACGAGATTAGCCAATAGCCAAAAAAAAAA]




>consensus_14079#0
ATGGACTGAAGGAGTAGAAAAACTCAACCAGCTGCCCTCCCAAATTTCTCTCCTCTTGCC
GACGACTCGGAAAAAAACCGCGGACACCGCGTCCGCTCGACGGAGGGAAGGGGATGAGCT
CCTCGTCGGCGTCGGCTGTGCCGCCGGAGGACGACGTCTGCTCGGTCTGCCACGACCGCT
TCCGGATCCCCTGCCAGGCCAACTGCTCCCATTGGTTCTGCGGAGAGTGCATTATCCGTG
TTTGGAATCATGGACCTTCTGTACAGCCTTGCAAGTGTCCCATTTGCCGTCGCCTTATTA
ATCTTCTGGTACCAGCAAATGTATCAATAGATAATGATGATGATCCGCAAATTCAGCATG
TTCTAGGAGAGGTTCAGCATTACAACCGCATATTTGGTGGAACACCCCGCAACCTGACTC
AGAGGTTGCAAGACCTACCCTTTTTCATCAGAAGACTGTTCAGGGAACTACTGGATCCCC
AGAGGACCCTCCCACTTGTCTTCAGGGCGAGGATGGTCATGATGGTAGCCCTGAGTGCAA
TTTATGTCCTGAGCCCCATCGACATTCTTCCTGAAAACGTGCTGGGGCTGTTTGGATTCT
TCGATGACTTCCTCGTGCTGCTGATCGTGTTCCTCCACCTTGCTGCTGTCTACCGTTCTC
TGCTGCTCTACCGCCACGGAGGCCACTGAATTGCTGCTGCACATTACGTGATGGCAGATG
GAGTACTTGCGTCCCTGGCTGACGTTCTGAGACAAGAGATATTTCATTTGTGCTGGAAGA
GATTGCTAGCTAAAGTCGATGATGATTGATGGTACGAATGATGGCGGCAGTAGTTTCTCT
CCCCCTGTGTATTCTATTTCGCTATGCTATGCCTTGTTTGGTGATATTCACATGGTGGAT
TTAATGAGACCGATTGCTTTTTCTTTAGTTTGATATATATACTCACACGAGATTAGCAAA
TAAAAAAAAAAA

consensusID : consensus_14079#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 807
fasta sequence

                              [AGGTTGCGGGACCTACCCTTTTTCATCAGAAGACTGTTCACGGAACTACTGGATGCCCAGAGGACCCTCCCACTTGTCTTCAGGGCGAGGATGGTCATGATGAGAATCCTGATTGCAGTTTATGTCCTGAGCCCCATCTACATTCTTCCTGAAAACGTGCTGGGGCTGATCGGATTCTTACATGACTTCCTCGTGCTGCTGATCGTGTTCCTGCACCTTGCTGCTGCCTACCGTTCTCTGCTGCTCTACCGACACTGGGGTCTGTGTATGTGCTCCTGCACATTACGTGCCACCCGACGGATAGCCTTCCTATCCCTGGCCTCCTGTGGTAGGACTCTTGATCTTCCATGTTCACCTGAGTTAGAGTTCTGCCTTAGGTCCTTCGTGCATCATCGTATCACACTATCGCTGTCTCTTCTTTTCGTCCACCTTATTCATTCTGTCACTCATTGCTTCGTCCTCTGTTCTGTGTGCTATGTCTTGTCTGCTGCGCGCGTGCGGCTCTCGTCTGTAGTATTCGTCCGGGTGCCGCCCGCTTTCTCGGTTGTCCGCCTCCCACCCCCGTCGTCCACTGCGCACTCCCGGGCGCGCCGCGCTATAGGTGCCCTCCACGTCCGTTGAGTTGGGCGTAGCGCCCAGTGCGCGGGGTGATATGGTGTGGCTGATGGTCTACTCGATGGTTGTGTGTTAGTTATTCTCTTATTGTTATGGTAGTTTAGTCCCCGTATCAGTCGGTTTGTATTTCTTCTTTGTCTCCGTTTATTGATTCTCGCTGCTGCTCTCGCCTGCCTTTCTCTCCTCGGATGG]

[+] EMBL BE040295             [AGGTTGCGGGACCTACCCTTTTTCATCAGAAGACTGTTCACGGAACTACTGGATGCCCAGAGGACCCTCCCACTTGTCTTCAGGGCGAGGATGGTCATGATGAGAATCCTGATTGCAGTTTATGTCCTGAGCCCCATCTACATTCTTCCTGAAAACGTGCTGGGGCTGATCGGATTCTTACATGACTTCCTCGTGCTGCTGATCGTGTTCCTGCACCTTGCTGCTGCCTACCGTTCTCTGCTGCTCTACCGACACTGGGGTCTGTGTATGTGCTCCTGCACATTACGTGCCACCCGACGGATAGCCTTCCTATCCCTGGCCTCCTGTGGTAGGACTCTTGATCTTCCATGTTCACCTGAGTTAGAGTTCTGCCTTAGGTCCTTCGTGCATCATCGTATCACACTATCGCTGTCTCTTCTTTTCGTCCACCTTATTCATTCTGTCACTCATTGCTTCGTCCTCTGTTCTGTGTGCTATGTCTTGTCTGCTGCGCGCGTGCGGCTCTCGTCTGTAGTATTCGTCCGGGTGCCGCCCGCTTTCTCGGTTGTCCGCCTCCCACCCCCGTCGTCCACTGCGCACTCCCGGGCGCGCCGCGCTATAGGTGCCCTCCACGTCCGTTGAGTTGGGCGTAGCGCCCAGTGCGCGGGGTGATATGGTGTGGCTGATGGTCTACTCGATGGTTGTGTGTTAGTTATTCTCTTATTGTTATGGTAGTTTAGTCCCCGTATCAGTCGGTTTGTATTTCTTCTTTGTCTCCGTTTATTGATTCTCGCTGCTGCTCTCGCCTGCCTTTCTCTCCTCGGATGG]




>consensus_14079#1
AGGTTGCGGGACCTACCCTTTTTCATCAGAAGACTGTTCACGGAACTACTGGATGCCCAG
AGGACCCTCCCACTTGTCTTCAGGGCGAGGATGGTCATGATGAGAATCCTGATTGCAGTT
TATGTCCTGAGCCCCATCTACATTCTTCCTGAAAACGTGCTGGGGCTGATCGGATTCTTA
CATGACTTCCTCGTGCTGCTGATCGTGTTCCTGCACCTTGCTGCTGCCTACCGTTCTCTG
CTGCTCTACCGACACTGGGGTCTGTGTATGTGCTCCTGCACATTACGTGCCACCCGACGG
ATAGCCTTCCTATCCCTGGCCTCCTGTGGTAGGACTCTTGATCTTCCATGTTCACCTGAG
TTAGAGTTCTGCCTTAGGTCCTTCGTGCATCATCGTATCACACTATCGCTGTCTCTTCTT
TTCGTCCACCTTATTCATTCTGTCACTCATTGCTTCGTCCTCTGTTCTGTGTGCTATGTC
TTGTCTGCTGCGCGCGTGCGGCTCTCGTCTGTAGTATTCGTCCGGGTGCCGCCCGCTTTC
TCGGTTGTCCGCCTCCCACCCCCGTCGTCCACTGCGCACTCCCGGGCGCGCCGCGCTATA
GGTGCCCTCCACGTCCGTTGAGTTGGGCGTAGCGCCCAGTGCGCGGGGTGATATGGTGTG
GCTGATGGTCTACTCGATGGTTGTGTGTTAGTTATTCTCTTATTGTTATGGTAGTTTAGT
CCCCGTATCAGTCGGTTTGTATTTCTTCTTTGTCTCCGTTTATTGATTCTCGCTGCTGCT
CTCGCCTGCCTTTCTCTCCTCGGATGG

consensusID : consensus_14079#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 413
fasta sequence

                              [NGCCATTTATGTCCTGAGCCCCNTCGACATTCTTCCTGAAAACGTGTCTGGGGCTGTTTGGATTCTTCGATGACTTCCTCGGTGCTGCTGATCGTGTGTCCTCCCCCTTGCTGCGTGTCNTACCGTTCTCTGCTGCTCTCCCGCCCCCGGAGGCCCCTGAATTGCTGCTGCGACCTTACGTGATGGCAGATGGAGTACTTGCGTCCCTGGCTGGACGTTCTGAGACCAGAGATATTTCATTTGTGGCTGGAAGAGATTGCTAGCTAAAGTCGATGATGATTGATGGTACGAATGATGGCGCCCAGTAGTTTCTCTCCCCCTCGTGTATTCTATTTCGCTATGCTATCCCTTGTTTGGTGATATTCNCCTGGTGGATTTAATGAGACCGATTGCTTTTTCTTTAAAAAAAAAAA]

[+] EMBL BM421466             [NGCCATTTATGTCCTGAGCCCCNTCGACATTCTTCCTGAAAACGTGTCTGGGGCTGTTTGGATTCTTCGATGACTTCCTCGGTGCTGCTGATCGTGTGTCCTCCCCCTTGCTGCGTGTCNTACCGTTCTCTGCTGCTCTCCCGCCCCCGGAGGCCCCTGAATTGCTGCTGCGACCTTACGTGATGGCAGATGGAGTACTTGCGTCCCTGGCTGGACGTTCTGAGACCAGAGATATTTCATTTGTGGCTGGAAGAGATTGCTAGCTAAAGTCGATGATGATTGATGGTACGAATGATGGCGCCCAGTAGTTTCTCTCCCCCTCGTGTATTCTATTTCGCTATGCTATCCCTTGTTTGGTGATATTCNCCTGGTGGATTTAATGAGACCGATTGCTTTTTCTTTAAAAAAAAAAA]




>consensus_14079#2
NGCCATTTATGTCCTGAGCCCCNTCGACATTCTTCCTGAAAACGTGTCTGGGGCTGTTTG
GATTCTTCGATGACTTCCTCGGTGCTGCTGATCGTGTGTCCTCCCCCTTGCTGCGTGTCN
TACCGTTCTCTGCTGCTCTCCCGCCCCCGGAGGCCCCTGAATTGCTGCTGCGACCTTACG
TGATGGCAGATGGAGTACTTGCGTCCCTGGCTGGACGTTCTGAGACCAGAGATATTTCAT
TTGTGGCTGGAAGAGATTGCTAGCTAAAGTCGATGATGATTGATGGTACGAATGATGGCG
CCCAGTAGTTTCTCTCCCCCTCGTGTATTCTATTTCGCTATGCTATCCCTTGTTTGGTGA
TATTCNCCTGGTGGATTTAATGAGACCGATTGCTTTTTCTTTAAAAAAAAAAA

consensusID : consensus_14079#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 300
fasta sequence

                              [CTACCGTTNTCTGCTGCTCTACCGCCACGGAGGCCNCTGAATTGCTGCTGCACATTACGTGATGGCAGATGGAGNACNTGCGTCCCTGGCTGACGTTNTGAGACAANANATATTTCATTTGTGCTGGAANAGATTGCTAGCTAAAGTCGATGATGATTGATGGNACGAATGATGGCGGCAGTAGTTTCTCTCCCCCTGTGTATTNTATTTCCGCTATGCTATGCCNTGTTTGGTGATATTCACATGGTGGATTTAATGAGACCGATTGCTTTTTNTTTAGTTTGNAAAAAAAAAAAAAAA]

[+] EMBL AU172774             [CTACCGTTNTCTGCTGCTCTACCGCCACGGAGGCCNCTGAATTGCTGCTGCACATTACGTGATGGCAGATGGAGNACNTGCGTCCCTGGCTGACGTTNTGAGACAANANATATTTCATTTGTGCTGGAANAGATTGCTAGCTAAAGTCGATGATGATTGATGGNACGAATGATGGCGGCAGTAGTTTCTCTCCCCCTGTGTATTNTATTTCCGCTATGCTATGCCNTGTTTGGTGATATTCACATGGTGGATTTAATGAGACCGATTGCTTTTTNTTTAGTTTGNAAAAAAAAAAAAAAA]




>consensus_14079#3
CTACCGTTNTCTGCTGCTCTACCGCCACGGAGGCCNCTGAATTGCTGCTGCACATTACGT
GATGGCAGATGGAGNACNTGCGTCCCTGGCTGACGTTNTGAGACAANANATATTTCATTT
GTGCTGGAANAGATTGCTAGCTAAAGTCGATGATGATTGATGGNACGAATGATGGCGGCA
GTAGTTTCTCTCCCCCTGTGTATTNTATTTCCGCTATGCTATGCCNTGTTTGGTGATATT
CACATGGTGGATTTAATGAGACCGATTGCTTTTTNTTTAGTTTGNAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_14079#0      ATGGACTGAAGGAGTAGAAAAACTCAACCAGCTGCCCTCCCAAATTTCTCTCCTCTTGCC 60
consensus_14079#3      ------------------------------------------------------------
consensus_14079#2      ------------------------------------------------------------
consensus_14079#1      ------------------------------------------------------------
                                                                                   

consensus_14079#0      GACGACTCGGAAAAAAACCGCGGACACCGCGTCCGCTCGACGGAGGGAAGGGGATGAGCT 120
consensus_14079#3      ------------------------------------------------------------
consensus_14079#2      ------------------------------------------------------------
consensus_14079#1      ------------------------------------------------------------
                                                                                   

consensus_14079#0      CCTCGTCGGCGTCGGCTGTGCCGCCGGAGGACGACGTCTGCTCGGTCTGCCACGACCGCT 180
consensus_14079#3      ------------------------------------------------------------
consensus_14079#2      ------------------------------------------------------------
consensus_14079#1      ------------------------------------------------------------
                                                                                   

consensus_14079#0      TCCGGATCCCCTGCCAGGCCAACTGCTCCCATTGGTTCTGCGGAGAGTGCATTATCCGTG 240
consensus_14079#3      ------------------------------------------------------------
consensus_14079#2      ------------------------------------------------------------
consensus_14079#1      ------------------------------------------------------------
                                                                                   

consensus_14079#0      TTTGGAATCATGGACCTTCTGTACAGCCTTGCAAGTGTCCCATTTGCCGTCGCCTTATTA 300
consensus_14079#3      ------------------------------------------------------------
consensus_14079#2      ------------------------------------------------------------
consensus_14079#1      ------------------------------------------------------------
                                                                                   

consensus_14079#0      ATCTTCTGGTACCAGCAAATGTATCAATAGATAATGATGATGATCCGCAAATTCAGCATG 360
consensus_14079#3      ------------------------------------------------------------
consensus_14079#2      ------------------------------------------------------------
consensus_14079#1      ------------------------------------------------------------
                                                                                   

consensus_14079#0      TTCTAGGAGAGGTTCAGCATTACAACCGCATATTTGGTGGAACACCCCGCAACCTGACTC 420
consensus_14079#3      ------------------------------------------------------------
consensus_14079#2      ------------------------------------------------------------
consensus_14079#1      ------------------------------------------------------------
                                                                                   

consensus_14079#0      AGAGGTTGCAAGACCTACCCTTTTTCATCAGAAGACTGTTCAGGGAACTACTGGATCCCC 480
consensus_14079#3      ------------------------------------------------------------
consensus_14079#2      ------------------------------------------------------------
consensus_14079#1      --AGGTTGCGGGACCTACCCTTTTTCATCAGAAGACTGTTCACGGAACTACTGGATGCCC 58
                                                                                   

consensus_14079#0      AGAGGACCCTCCCACTTGTCTTCAGGGCGAGGATGGTCATGATGGTAGCCCTGAGTGCAA 540
consensus_14079#3      ------------------------------------------------------------
consensus_14079#2      -------------------------------------------------------NGCCA 5
consensus_14079#1      AGAGGACCCTCCCACTTGTCTTCAGGGCGAGGATGGTCATGATGAGAATCCTGATTGCAG 118
                                                                                   

consensus_14079#0      TTTATGTCCTGAGCCCCATCGACATTCTTCCTGAAAACGTG-CTGGGGCTGTTTGGATTC 599
consensus_14079#3      ------------------------------------------------------------
consensus_14079#2      TTTATGTCCTGAGCCCCNTCGACATTCTTCCTGAAAACGTGTCTGGGGCTGTTTGGATTC 65
consensus_14079#1      TTTATGTCCTGAGCCCCATCTACATTCTTCCTGAAAACGTG-CTGGGGCTGATCGGATTC 177
                                                                                   

consensus_14079#0      TTCGATGACTTCCTCG-TGCTGCTGATCGTGT-TCCTCCACCTTGCTGCTG--TCTACCG 655
consensus_14079#3      ------------------------------------------------------CTACCG 6
consensus_14079#2      TTCGATGACTTCCTCGGTGCTGCTGATCGTGTGTCCTCCCCCTTGCTGCGTGTCNTACCG 125
consensus_14079#1      TTACATGACTTCCTCG-TGCTGCTGATCGTGT-TCCTGCACCTTGCTGCTG--CCTACCG 233
                                                                              *****

consensus_14079#0      TTCTCTGCTGCTCTACCGCCAC-GGAGGCCACTGAATTGCTGCTGC-ACATTACGTGATG 713
consensus_14079#3      TTNTCTGCTGCTCTACCGCCAC-GGAGGCCNCTGAATTGCTGCTGC-ACATTACGTGATG 64
consensus_14079#2      TTCTCTGCTGCTCTCCCGCCCCCGGAGGCCCCTGAATTGCTGCTGCGACCTTACGTGATG 185
consensus_14079#1      TTCTCTGCTGCTCTACCGACACTGGGGTCTGTGTATGTGCTCCTGC-ACATTACGTGCCA 292
                       ** *********** *** * * ** * *     *  **** **** ** *******   

consensus_14079#0      GCAGATGGAGTACTTGC--GTCCCTGGCTG-ACGTTCTGAGACAAGAGATATTTCATTTG 770
consensus_14079#3      GCAGATGGAGNACNTGC--GTCCCTGGCTG-ACGTTNTGAGACAANANATATTTCATTTG 121
consensus_14079#2      GCAGATGGAGTACTTGC--GTCCCTGGCTGGACGTTCTGAGACCAGAGATATTTCATTTG 243
consensus_14079#1      CCCGACGGATAGCCTTCCTATCCCTGGCCTCCTGTGGTAGGACTCTTGATCTTCCATGTT 352
                        * ** ***   * * *   ********     **  *  ***     ** ** *** * 

consensus_14079#0      TG-CTGGAAGAGATTGCTAGCTAAAGTCGATGATGATTGATGGTACGA-ATGATGGCGGC 828
consensus_14079#3      TG-CTGGAANAGATTGCTAGCTAAAGTCGATGATGATTGATGGNACGA-ATGATGGCGGC 179
consensus_14079#2      TGGCTGGAAGAGATTGCTAGCTAAAGTCGATGATGATTGATGGTACGA-ATGATGGCGCC 302
consensus_14079#1      CACCTGAGTTAGAGTTCTGCCTTAGGTCCTTCGTGCATCATCGTATCACACTATCGCTGT 412
                          ***    *** * **  ** * ***  *  **  * ** * *  * *  ** **   

consensus_14079#0      -AGTAGTTTCTCTCCCCCT-GTGTATTCTATTTC--GCTATGCTATGCCTTGTTTGGTGA 884
consensus_14079#3      -AGTAGTTTCTCTCCCCCT-GTGTATTNTATTTCC-GCTATGCTATGCCNTGTTTGGTGA 236
consensus_14079#2      CAGTAGTTTCTCTCCCCCTCGTGTATTCTATTTC--GCTATGCTATCCCTTGTTTGGTGA 360
consensus_14079#1      CTCTTCTTTTCGTCCACCTTATTCATTCTGTCACTCATTGCTTCGTCCTCTGTTCTGTGT 472
                          *  ***   *** ***  *  *** * *  *    *      * *  ****  *** 

consensus_14079#0      TATTCACATGGTGGATTTAATGAGACCGATTGCTTTTTCTTTAGTTTGATATATATACTC 944
consensus_14079#3      TATTCACATGGTGGATTTAATGAGACCGATTGCTTTTTNTTTAGTTTGNAAAAAAAAAAA 296
consensus_14079#2      TATTCNCCTGGTGGATTTAATGAGACCGATTGCTTTTTCTTTAAAAAAAAAAA------- 413
consensus_14079#1      GCTATGTCTTGTCTGCTGCGCGCGTGCGGCTCTCGTCTGTAGTATTCGTCCGGGTGCCGC 532
                         *     * **    *    * *  **  *    * * *                    

consensus_14079#0      ACACGAGATTAGCAAATAAAAAAAAAAA-------------------------------- 972
consensus_14079#3      AAAA-------------------------------------------------------- 300
consensus_14079#2      ------------------------------------------------------------
consensus_14079#1      CCGCTTTCTCGGTTGTCCGCCTCCCACCCCCGTCGTCCACTGCGCACTCCCGGGCGCGCC 592
                                                                                   

consensus_14079#0      ------------------------------------------------------------
consensus_14079#3      ------------------------------------------------------------
consensus_14079#2      ------------------------------------------------------------
consensus_14079#1      GCGCTATAGGTGCCCTCCACGTCCGTTGAGTTGGGCGTAGCGCCCAGTGCGCGGGGTGAT 652
                                                                                   

consensus_14079#0      ------------------------------------------------------------
consensus_14079#3      ------------------------------------------------------------
consensus_14079#2      ------------------------------------------------------------
consensus_14079#1      ATGGTGTGGCTGATGGTCTACTCGATGGTTGTGTGTTAGTTATTCTCTTATTGTTATGGT 712
                                                                                   

consensus_14079#0      ------------------------------------------------------------
consensus_14079#3      ------------------------------------------------------------
consensus_14079#2      ------------------------------------------------------------
consensus_14079#1      AGTTTAGTCCCCGTATCAGTCGGTTTGTATTTCTTCTTTGTCTCCGTTTATTGATTCTCG 772
                                                                                   

consensus_14079#0      -----------------------------------
consensus_14079#3      -----------------------------------
consensus_14079#2      -----------------------------------
consensus_14079#1      CTGCTGCTCTCGCCTGCCTTTCTCTCCTCGGATGG 807