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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14081#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 14 consensus length = 813 fasta sequence
[CGCAGAAGACATACACACACAAACACAAGCCACCCTTCCGATTTGTTCATCGATCAGTTCGCAGCGTACGTCAGGCTAGCTAACTAGTGTTTGGCAATGGCGTCCGGGCAGCAGCAGCAGGGCAGGTCGGAGCTGGACCGCATGGCCAGGGAGGGCCAGACCGTCGTCCCCGGCGGCACCGGCGGCAAGAGCCTCGAGGCCCAGGAGAACCTCGCCGA-GGGGCGCAGCCGCGG-GGGGCAGACGAGGAAGGAGCAGA-TGGGGGAGGAAGGGTA-CCGCGAGATGGGGC-GCAAGGGCGGCCTCAGCACCGGCGACGAGT-CCGGCGGCGA-GCGCGCCGCCCGCGAGGGCATCGACAT-CGACGAGTC--C-AAGTACA-AGACCAAGTC-CTAGACTACAC-AC-ACTTT-TGCATCCGTGAATGCCAGT-GTG-TCGTA-GTCGTCTC-AGTT-GTAGTC-ATCCGAGTC-AGTC-TTAGC-TAGCTAGCTCTC-TTATC-AATAATAATGTAGGTCTTGAC-GGATGCACGCATGTAGGCGCCCGTATGATT-TGC--TATGTTATGTTTCATATGGT-GATGCGTGCTTAGCTTTAGCTAGCTTTGGTAGTTTGGTTTAGGTGCTGATCGATCATGGTCAGTAGCTAGGGTATGTGTTTTAGTTTATTGCAGGATC-GGTCAGG-CAGGGGCTGAATGCTAGCTAGGTGATGCTTTGGCTTTTCATGGCCAGCAGCTGCTAGCTTCTTGTTT-CCA-ACTGATGCCTCTGCTGGGTGTGTCCTTTGTAACCGTGCTTGCTTTC-AGTTAATCTAGCTAGCTGTTGTTCATCCGAAAAAAAAAAA]
[+] EMBL AK063677 [CGCAGAAGACATACACACACAAACACAAGCCACCCTTCCGATTTGTTCATCGATCAGTTCGCAGCGTACGTCAGGCTAGCTAACTAGTGTTTGGCAATGGCGTCCGGGCAGCAGCAGCAGGGCAGGTCGGAGCTGGACCGCATGGCCAGGGAGGGCCAGACCGTCGTCCCCGGCGGCACCGGCGGCAAGAGCCTCGAGGCCCAGGAGAACCTCGCCGA GGGGCGCAGCCGCGG GGGGCAGACGAGGAAGGAGCAGA TGGGGGAGGAAGGGTA CCGCGAGATGGGGC GCAAGGGCGGCCTCAGCACCGGCGACGAGT CCGGCGGCGA GCGCGCCGCCCGCGAGGGCATCGACAT CGACGAGTC C AAGTACA AGACCAAGTC CTAGACTACAC AC ACTTT TGCATCCGTGAATGCCAGT GTG TCGTA GTCGTCTC AGTT GTAGTC AT CGAGTC AGTC TTAGC TAGCTAGCTCTC TTATC AATAATAATGTAGGTCTTGAC GGATGCACGCATTTAGGCGCCCGTATGATT TGC TATGTT TGTTTCATATGGT GATGCGTGCTTAGCTTTAGCTAGCTTTGGTAGTTTGGTTTAGGTGCTGATCGATCATGGTCAGTAGCTAGGGTATGTGTTTTAGTTTATTGCAGGATC GGTCAGG CAGGGGCTGAATGCTAGCTAGGTGATGCTTTGGCTTTTCATGGCCAGCAGCTGCTAGCTTCTTGTTT CCA ACTGATGCCTCTGCTGGGTGTGTCCTTTGTAACCGTGCTTGCTTTC AGTTAATCTAGCTAGCTGT ]
[+] EMBL C73579 [ ACATACACACACAAACACAAGCTACCCTTCCGATTTGTTCATCGATCAGTTCGCAGCGTACGTTAGGCTAGCTAACTAGTGTTTGGCAATGGCGTNCGGGCAGCAGCAGCAGGGCAGGTCGGAGCTGGACCGCATGGCCAGGGAGGGCCAGACCGTCGTCCCCGGCGGCACCGGCGGCAAGAGCCTCGAGGCCCAGGAGAACCTCGCCGAGGGGGCGCACGCG GG GGGGCAAAANAGGAAGGAGC GA TGGGGG ]
[+] EMBL OSC1801 [ AAACACAAGCCACCCTTCCGATTTGTTCATCGATCAGTTCGCAGCGTACGTCAGGCTAGCTAACTAGTGTTTGGCAATNGCGTCCGGGCAGCAGCAGCAGGGCAGGTCGGAGCTGGACCGCATTGCCAGGGAGGG CAGACCGTCGTCCCCNGCNGCACCNGCGGCAAGAGCCTCGAGGCCCAGGAGAACCTCGCCGA GGGGC CA CGCGGTNGGGCAGACGAGGAAGGAGCAGA TNGGGGAGGAAGGGTA CCGCGAGATNGGGC GCAAGGGCGGNCTCAGCACCGGCGACGAGT TCGGCGG ]
[+] EMBL AU069202 [ AAGCCACCCTTCCGATNTGTTCANCGATCANTTCGCAGCGTACGTCAGGCTANCTAACTAGTGTTTGGCAATGGCGTCCGGGCAGCAGCAGCAGGGCAGGTCGGAGCTGGACCGCATGGCCAGGGAGGGCCAGACCGTCGTCCCCGGCGGCACCGGCGGCAAGAGCCTCGAGGCCCAGGAGAACCTCGCCGA GGGGCGCA CGCGG GGGGCAGACGAGGAAGGAGCAGA TGGGGGAGGAAGGGTA CCGCGAGATGGGGC GCAAGGGCGGCCTCAGCACCGGCGACGAGT CCGGCGGCG ]
[+] EMBL AU090658 [ GCTAGCTAACTAGTGTTNGGCAATGGCGTCCGGGCAGCAGCAGCAGGGCAGGTCGAAGCTGGACCGCATGGCCAGGGAGGGCCAGACCGTCGTCCCCGGCGGCACCGGCGGCAAGAGCCTCGAGGCCCAGGAGAACCTCGCCGA GGGGCGCAGCCGCGG GGGGCAGACGAGGAAGGAGCAGA TGGGGGAGGAAGGGTA CCGCGAGATGGGGC GCAAGGGCGGCCTCAGCACCGGCGACGAGT CCGGCGGCGA GCGCGCCGCCCGCGAGGGCATCGACAT CGACGAGTC C AAGTACA AGACCAAGTC CTAGACTACAC AC ACTTT TGCATCCGTGAATGCCAGT GTG TCGTA GTCGTCTC AGTT GTAGTC AT CGAGTC AGTC TTAGC TAGCTAGCTCTC TTATC AATAATAATGTAGGTCTTGAC GGATGCACGCATTTAGGCGCCCGTATGATT TGC TATGTTATGTTTCATATGGT GATGCGTGCTTAGCTTTAGCTAGCTTTGGTAGTTTGGTTTAGGTGCTGATCGATCATGGTCAGTAGCTAGGGTATGTGTTTTAGTTTATTGCAGGATC GGTCAGG CAGGGGCTGAATGCTAGCTAGGTGATGCTTTGGCTTTTCATGGCCAGCAGCTGCTAGCTTCTTGTTT CCA ACTGATGCCTCTGCTGGGTGTGTCCTTTGTAAaaa ]
[+] EMBL AK119674 [ CGA GGGGCGCAGCCGCGG GGGGCAGACGAGGAAGGAGCAGA TGGGGGAGGAAGGGTA CCGCGAGATGGGGC GCAAGGGCGGCCTCAGCACCGGCGACGAGT CCGGCGGCGA GCGCGCCGCCCGCGAGGGCATCGACAT CGACGAGTC C AAGTACA AGACCAAGTC CTAGACTACAC AC ACTTT TGCATCCGTGAATGCCAGT GTG TCGTA GTCGTCTC AGTT GTAGTC AT CGAGTC AGTC TTAGC TAGCTAGCTCTC TTATC AATAATAATGTAGGTCTTGAC GGATGCACGCATTTAGGCGCCCGTATGATT TGC TATGTTATGTTTCATATGGT GATGCGTGCTTAGCTTTAGCTAGCTTTGGTAGTTTGGTTTAGGTGCTGATCGATCATGGTCAGTAGCTAGGGTATGTGTTTTAGTTTATTGCAGGATC GGTCAGG CAGGGGCTGAATGCTAGCTAGGTGATGCTTTGGCTTTTCATGGCCAGCAGCTGCTAGCTTCTTGTTT CCA ACTGATGCCTCTGCTGGGTGTGTCCTTTGTAACCGTGCTTGCTTTC AGTTAATCTAGCTA ]
[+] EMBL AU090657 [ nACGAGGAAGGAGCAGN TGGGGGAGGAAGGGTACCCCCGAGATGGGGC NCAAGGGCGGCCTCAGCACCGGCGACGAGTCCCGGCGGCGA GCGCGCCGCCCGCGAGGGCATCGACAT CGACGAGTC C AAGTACA AGACCAAGTC CTAGACTACAC AC ACTTT TGCATCCGTGAATGCCAGT GTG TCGTA GTCGTCTC AGTT GTAGTC AT CGAGTC AGTC TTAGC TAGCTAGCTCTC TTATC AATAATAATGTAGGTCTTGAC GGATGCACGCATTTAGGCGCCCGTATGATT TGC TATGTTATGTTTCATATGGT GATGCGTGCTTAGCTTTAGCTAGCTTTGGTAGTTTGGTTTAGGTGCTGATCGATCATGGTCAGTAGCTAGGGTATGTGTTTTAGTTTATTGCAGGATC GGTCAGG CAGGGGCTGAATGCTAGCTAGGTGATGCTTTGGCTTTTCATGGCCAGCAGCTGCTAGCTTCTTGTTT CCA ACTGATGCCTCTGCTGGGTGTGTCCTTTGTAACCGTGCTTGCTTTC AGTTAATCTAGCTAGCTGTTGTTCATCCGAAAAAAAAAAA]
[+] EMBL BI795557 [ GGAAGGGACAGATTGGGGGAGGAAGGGTA CCGCGA ATATGGCTGCAA GGCGCCCTCAGCACC GCGACGA T CC GCGGCGA GCGCGCCGCCCGCGAGGGCATCGACAT CGACGAGTC C AAGTACA AGACCAAGTC CTAGACTACAC AC ACTTT TGCATCCGTGAATGCCAGT GTG TCGTA GTCGTCTC AGTT GTAGTC ATCCGAGTC AGTC TTAGC TAGCTAGCTCTC TTATC AATAATAATGTAGGTCTTGAC GGATGCACGCATGTAGGCGCCCGTATGATT TGC TATGTTATGTTTCATATGGT GATGCGTGCTTAGCTTTAGCTAGCTTTGGTAGTTTGGTTTAGGTGCTGATCGATCATGGTCAGTAGCTAGGGTATGTGTTTTAGTTTATTGCAGGATC GGTCAGG CAGGGGCTGAATGCTAGCTAGGTGATGCTTTGGCTTTTCATGGCCAGCAGCTGCTAGCTTCTTGTTT CCA ACTGATGCCTCTGCTGGGTGTGTCCTTTGTAACCGTGCTTGCTTTC AGTTAATCTAGCTAGCTGTTGTTCATCCGAAAAA ]
[+] EMBL BI797384 [ GAAGGGTA CCGCGAGATGGGGC GCAAGGGC GCCTCAGCACCGGCGACGAGT CCGGCGGCGA GCGCGCCGCCCGCGAGGGCATCGACAT CGACGAGTC C AAGTACA AGACCAAGTC CTAGACTACAC AC ACTTT TGCATCCGTGAATGCCAGT GTG TCGTA GTCGTCTC AGTT GTAGTC ATCCGAGTC AGTC TTAGC TAGCTAGCTCTC TTATC AATAATAATGTAGGTCTTGAC GGATGCACGCATGTAGGCGCCCGTATGATT TGC TATGTTATGTTTCATATGGT GATGCGTGCTTAGCTTTAGCTAGCTTTGGTAGTTTGGTTTAGGTGCTGATCGATCATGGTCAGTAGCTAGGGTATGTGTTTTAGTTTATTGCAGGATC GGTCAGG CAGGGGCTGAATGCTAGCTAGGTGATGCTTTGGCTTTTCATGGCCA CAGCTGCTAGCTTCTTGTTT CCA ACTGATGCCTCTGCTGGGTGTGTCCTTTGTAACCGTGCTTGCTTTC AGTTAATCTAGCTAGCTGTTGTTCATCCGAAAAA ]
[+] EMBL BI797804 [ aGGCGGCCTCAGCACCGGCGACGAGT CC GC GCGA GCGC CCGCCCGCGAGGGCATCGACAT CGACGAGTC C AAGTACA AGACCAAGTC CTAGACTACAC AC ACTTT TGCATCCGTGAATGCCAGT GTG TCGTA GTCGTCTC AGTT GTAGTC ATCCGAGTC AGTCGTTAGC TAGCTAGCTCTC TTATC AATAATAATGTAGGTCTTGAC GGATGCACGCATGTAGGCGCCCGTATGATT TGC TATGTTATGTTTCATATGGT GATGCGTGCTTAGCTTTAGCTAGCTTTGGTAGTTTGGTTTAGGTGCTGATCGATCATGGTCAGTAGCTAGGGTATGTGTTTTAGTTTATTCCAGGATC GGTCAGG CAGGGGCTGAATGCTAGCTAGGTGATGCTTTGGCTTTTCATGGCCAGCAGCTGCTAGCTTCTTGTTTCCCA ACTGATGCCTCTGCTGGGTGTGTCCTTTGTAACCGTGCTTGCTTTC AGTTAATCTAGCTAGCTGTTGTTCATCCGAAAAAAAAAA ]
[+] EMBL BI794952 [ CCTCAGCACCGGCGACGAGT CC GCGGCGA GCGC CCGCCCGCGAGTGCATCGACAT CGACGAGTC C AAGTACA AGACCAAGTC CTAGACTACAC AC ACTTT TGCATCCGTGAAT CCAGT GTT TCGTA GTCGTCTC AGTT GTAGTC ATCCGAGTC AGTC TTAGC TAGCTAGCTCTC TTATC AATAATAATGTAGGTCTTGAC GGATGCACGCATGTAGGCGCCCGTATGATT TGC TATGTTATGTTTCATATGGT GATGCGTGCTTAGCTTTAGCTAGCTTTGGTA TTT GTTTAGGTGCTGATCGATCATGGTCAGTAGCTAGGGTATGTGTTTTAGTTTATTCCAGGATC GGTCAGGCCAGGGGCTGAATGCTAGCTAGGTGATGCTTTGGCTTTTCATGGCCAGCAGCTGCTAGCTTCTTGTTT CCACACTGATGCCTCTGCTGGGTGTGTCCTTTGTAACCGTGCTTGCTTTC AGTTAATCTAGCTAGCTGTTGTTCAaaa ]
[+] EMBL BI796146 [ cgaacgGAGT CC GC GCGAGGCGCCCCCCCCGCGAGGGCATCGACATCCGACGAGTCCAC AAGTACACAGACCAAGTC CTAGACTACAC AC ACTTT TGCATCCGTGAATGCCAGTGGTT TCGTA GTCGTCTC AGTT GTAGTC ATCCGAGTC AGTC TTAGC TAGCTAGCTCTC TTATC CATAATAATGTAGGTCTTGAC GGATGCACGCATGTAGGCGCCCGTATGATT TGC TATGTTATGTTTCATATGGT GATGCGTGCTTAGCTTTAGCTAGCTTTGGTAGTTTGGTTTAGGTGCTGATCGATCATGGTCAGTAGCTAGGGTATGTGTTTTAGTTTATTGCAGGATC GGTCAGG CAGGGGCTGAATGCTAGCTAGGTGATGCTTTGGCTTTTCATGGCCAGCAGCTGCTAGCTTCTTGTTT CCA ACTGATGCCTCTGCTGGGTGTGTCCTTTGTAACCGTGCTTGCTTTC AGTTAATCTAGCTAGCTGTTGTTCATCCGAAAAAA ]
[+] EMBL BI795866 [ CGAGTC CAAAGTACA AGACCAAGTCACTAGACTACACAACAACTTTGTGCATCCGGGAAT CCAGT GTGTTCGTATGTCGTCTCAAGTTGGTAGTCAATCCGAGTCAAGTC TTAGCGTAGCTAGCTCTCGTTATCAAATAATAATGTAGGTCTTGACAGGATGCACGCATGTAGGCGCCCGTATGATTGTGCCATATGTTATGTTTCATATGGTGGATGCGTGCTTAGCTTTAGCTAGCTTTGGTA TTT GTTTAGGTGCTGATCGATCATGGTCAGTAGCTAGGGTATGTGTTTTAGTTTATT CAGGATCAGGTCA G CA GGGCTGAATGCTAGCTAGGTGATGCTTTGGCTTTTCATGGCCAGCAGCTGCTAGCTTCTTGTTT CCA ACTGATGCCTCTGCTGGGTGTGTCCTTTGTAACCGTGCTTGCTTTCAAGTTAA ]
[-] EMBL AU078010 [ CAGG CAGGGGCTGAATGCTAGCTAGGTGATGCTTTGGCTTTTCATGGCCAGCAGCTGCTAGCTTCTTGTTT CCA ACTGATGCCTCTGCTGGGTGTGTCCTTTGTAACCGTGCTTGCTTTC AGTTAATCTAGCTAGCTGTTGTTCATCCGAA ]
consensusID : consensus_14081#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 160 fasta sequence
[AGAGGACGAGACAAGGGGCTGAATGCTAGCTAGGTGATGCTTTGGCTTTTCATGGCCAGCAGCTGCTAGCTTCTTGTTTCCAACTGATGCCTTTGCTGGGTGTGTCCTTTGTAACCGTGCTTGCTTTCAGTTAATCTAGCTGGCTGTTGTTCAAAAAAAA]
[-] EMBL CA760695 [AGAGGACGAGACAAGGGGCTGAATGCTAGCTAGGTGATGCTTTGGCTTTTCATGGCCAGCAGCTGCTAGCTTCTTGTTTCCAACTGATGCCTTTGCTGGGTGTGTCCTTTGTAACCGTGCTTGCTTTCAGTTAATCTAGCTGGCTGTTGTTCAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14081#0 CGCAGAAGACATACACACACAAACACAAGCCACCCTTCCGATTTGTTCATCGATCAGTTC 60
consensus_14081#1 ------------------------------------------------------------
consensus_14081#0 GCAGCGTACGTCAGGCTAGCTAACTAGTGTTTGGCAATGGCGTCCGGGCAGCAGCAGCAG 120
consensus_14081#1 ------------------------------------------------------------
consensus_14081#0 GGCAGGTCGGAGCTGGACCGCATGGCCAGGGAGGGCCAGACCGTCGTCCCCGGCGGCACC 180
consensus_14081#1 ------------------------------------------------------------
consensus_14081#0 GGCGGCAAGAGCCTCGAGGCCCAGGAGAACCTCGCCGAGGGGCGCAGCCGCGGGGGGCAG 240
consensus_14081#1 ------------------------------------------------------------
consensus_14081#0 ACGAGGAAGGAGCAGATGGGGGAGGAAGGGTACCGCGAGATGGGGCGCAAGGGCGGCCTC 300
consensus_14081#1 ------------------------------------------------------------
consensus_14081#0 AGCACCGGCGACGAGTCCGGCGGCGAGCGCGCCGCCCGCGAGGGCATCGACATCGACGAG 360
consensus_14081#1 ------------------------------------------------------------
consensus_14081#0 TCCAAGTACAAGACCAAGTCCTAGACTACACACACTTTTGCATCCGTGAATGCCAGTGTG 420
consensus_14081#1 ------------------------------------------------------------
consensus_14081#0 TCGTAGTCGTCTCAGTTGTAGTCATCCGAGTCAGTCTTAGCTAGCTAGCTCTCTTATCAA 480
consensus_14081#1 ------------------------------------------------------------
consensus_14081#0 TAATAATGTAGGTCTTGACGGATGCACGCATGTAGGCGCCCGTATGATTTGCTATGTTAT 540
consensus_14081#1 ------------------------------------------------------------
consensus_14081#0 GTTTCATATGGTGATGCGTGCTTAGCTTTAGCTAGCTTTGGTAGTTTGGTTTAGGTGCTG 600
consensus_14081#1 ------------------------------------------------------------
consensus_14081#0 ATCGATCATGGTCAGTAGCTAGGGTATGTGTTTTAGTTTATTGCAGGATCGGTCAGGCAG 660
consensus_14081#1 ------------------------------------------AGAGGACGAGACA---AG 15
**** * ** **
consensus_14081#0 GGGCTGAATGCTAGCTAGGTGATGCTTTGGCTTTTCATGGCCAGCAGCTGCTAGCTTCTT 720
consensus_14081#1 GGGCTGAATGCTAGCTAGGTGATGCTTTGGCTTTTCATGGCCAGCAGCTGCTAGCTTCTT 75
************************************************************
consensus_14081#0 GTTTCCAACTGATGCCTCTGCTGGGTGTGTCCTTTGTAACCGTGCTTGCTTTCAGTTAAT 780
consensus_14081#1 GTTTCCAACTGATGCCTTTGCTGGGTGTGTCCTTTGTAACCGTGCTTGCTTTCAGTTAAT 135
***************** ******************************************
consensus_14081#0 CTAGCTAGCTGTTGTTCATCCGAAAAAAAAAAA 813
consensus_14081#1 CTAGCTGGCTGTTGTTCA----AAAAAAA---- 160
****** *********** *******
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||