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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14082#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1216 fasta sequence
[GCGTGCGATCGGAGGCGGCCGGGCTCGATCGATCCGCCGCCGATCCAGGTGCTCCCCGTGGTGGTGGGCGGTGGCGGGGGCGCGGGATTGGACTCCAGCAGCGACGGATCCACCAACGGCCAGCCGAATCGTCGGAGAAGGAGTAGCTTCAACCAAGGGAGGAGGAGGATGGGAGGCCGACCAAGGCGAACTGATAGGGAGGATAGTGTGCGGCGAACTGTCTATGTATCTGACATTGATCAGCATGTGACTGAACAGAAGCTTGCTGAAGTTTTCTCAAATTGCGGACAAGTGGTAGATTGCCGTATATGTGGTGACCCAAATTCAGTGCTGCGTTTTGCCTTTATCGAGTTTGCCGATGATGTTGGTGCAAGAGCAGCTTTAACACTTGGTGGAACCGTGCTTGGTTATTACCCTGTGAGAGTTCTGCCATCTAAGACCGCGATTTTGCCGGTGAACCCTAAATTTTTACCTCGAACAGAGGACGAGAAAGAAATGGTGTCAAGGACTGTGTATTGTACTAACATCGATAAGAATGTTCCTGAAGATGCTGTGAAGAGCTTCTTTGAGGGGATGTGTGGTGAAGTTGCTCGACTGAGGCTACTGGGTGATTATGTGCACTCCACATGCATCGCGTTTGTTGAGTTTGTTCAAGCAGACTCTGCTATTCTTGCTCTGAGTTGCAGTGGCATGGTCCTTGGAGCGCTTCCCGTCAGGGTGAGCCCGTCAAAGACACCGGTCCGGCCCCGTTCGCCCCGTGTGACGTCGCACTGAAACCCGGCTCTCTCATCTGAAGCCATCGTCCAGGGCAGCAAAGCCTCCTCTCTAGTCTGTGTGGCCTTAGAGACCGTCTGTCGCGTCGCGGATCAGTAATTGTCGTCGAAGAGAGTTTGTCCTTTTGGTTATTCTACTAGTCTTAGCAGAAGGCCCCCTACATACCGCGCTGATGTGTTCTTGGATCAGACAGAGACCAATCTGTATGTTCTCCGGGAGCTCTATTTTGACCCCCTCTCATCTCTCCTCTGCCCCCCAACTTATCACCCCCTTCCCTTTTGTTATTTTGTTATCGATGGATGCTGTAGCGGCCTTTGACAGGCATTGGAACAAATAATGTCTATGGCTTGTCCTATTTTCACCGGCTACGCTGTGAATTGATTCATCATCCCTAACTGGAGTAAACTCTGGTGGTGTTCATATTCGTGCAAAAAAAAAAAGA]
[+] EMBL CB661022 [GCGTGCGATCGGAGGCGGCCGGGCTCGATCGATCCGCCGCCGATCCAGGTGCTCCCCGTGGTGGTGGGCGGTGGCGGGGGCGCGGGATTGGACTCCAGCAGCGACGGATCCACCAACGGCCAGCCGAATCGTCGGAGAAGGAGTAGCTTCAACCAAGGGAGGAGGAGGATGGGAGGCCGACCAAGGCGAACTGATAGGGAGGATAGTGTGCGGCGAACTGTCTATGTATCTGACATTGATCAGCATGTGACTGAACAGAAGCTTGCTGAAGTTTTCTCAAATTGCGGACAAGTGGTAGATTGCCGTATATGTGGTGACCCAAATTCAGTGCTGCGTTTTGCCTTTATCGAGTTTGCCGATGATGTTGGTGCAAGAGCAGCTTTAACACTTGGTGGAACCGTGCTTGGTTATTACCCTGTGAGAGTTCTGCCATCTAAGACCGCGATTTTGCCGGTGAACCCTAAATTTTTACCTCGAACAGAGGACGAGAAAGAAATGGTGTCAAGGACTGTGTATTGTACTAACATCGATAAGAATGTTCCTGAAGATGCTGTGAAGAGCTTCTTTGAGGGGATGTGTGGTGAAGTTGCTCGACTGAGGCTACTGGGTGATTATGTGCACTCCACATGCATCGCGTTTGTTGAGTTTGTTCAAGCAGACTCTGCTATTCTTGCTCTGAGTTGCAGTGGCATGGTCCTTGGAGCGCTTCCCGTCAGGGTGAGCCCGTCAAAGACACCGGTCCGGCCCCGTTCGCCCCGTGTGACGTCGCACTGAAACCCGGCTCTCTCATCTGA ]
[+] EMBL CA997852 [ atCAGCGACGGATCCACCAACGGCCAGCCGAATCGTCGGAGAAGGAGTAGCTTCAACCAAGGGAGGAGGAGGATGGGAGGCCGACCAAGGCGAACTGATAGGGAGGATAGTGTGCGGCGAACTGTCTATGTATCTGACATTGATCAGCATGTGACTGAACAGAAGCTTGCTGAAGTTTTCTCAAATTGCGGACAAGTGGTAGATTGCCGTATATGTGGTGACCCAAATTCAGTGCTGCGTTTTGCCTTTATCGAGTTTGCCGATGATGTTGGTGCAAGAGCAGCTTTAACACTTGGTGGAACCGTGCTTGGTTATTACCCTGTGAGAGTTCTGCCATCTAAGACCGCGATTTTGCCGGTGAACCCTAAATTTTTACCTCGAACAGAGGACGAGAAAGAAATGGTGTCAAGGACTGTGTATTGTACTAACATCGATAAGAATGTTCCTGAAGATGCTGTGAAGAGCTTCTTTGAGGGGATGTGTGGTGAAGTTGCTCGACTGAGGCTACTGGGTGATTATGTGCACTCCACATGCATCGCGTTTGTTGAGTTTGTTCAAGCAGACTCTGCTATTCTTGCTCTGAGTT ]
[-] EMBL CB681496 [ CTTTAACACTTGGTGGAACCGTGCTTGGTTATTACCCTGTGAGAGTTCTGCCATCTAAGACCGCGATTTTGCCGGTGAACCCTAAATTTTTACCTCGAACAGAGGACGAGAAAGAAATGGTGTCAAGGACTGTGTATTGTACTAACATCGATAAGAATGTTCCTGAAGATGCTGTGAAGAGCTTCTTTGAGGGGATGTGTGGTGAAGTTGCTCGACTGAGGCTACTGGGTGATTATGTGCACTCCACATGCATCGCGTTTGTTGAGTTTGTTCAAGCAGACTCTGCTATTCTTGCTCTGAGTTGCAGTGGCATGGTCCTTGGAGCGCTTCCCGTCAGGGTGAGCCCGTCAAAGACACCGGTCCGGCCCCGTTCGCCCCGTGTGACGTCGCACTGAAACCCGGCTCTCTCATCTGAAGCCATCGTCCAGGGCAGCAAAGCCTCCTCTCTAGTCTGTGTGGCCTTAGAGACCGTCTGTCGCGTCGCGGATCAGTAATTGTCGTCGAAGAGAGTTTGTCCTTTTGGTTATTCTACTAGTCTTAGCAGAAGGCCCCCTACATACCGCGCTGATGTGTTCTTGGATCAGACAGAGACCAATCTGTATGTTCTCCGGGAGCTCTATTTTGACCCCCTCTCATCTCTCCTCTGCCCCCCAACTTATCACCCCCTTCCCTTTTGTTATTTTGTTATCGATGGATGCTGTAGCGGCCTTTGACAGGCATTGGAACAAATAATGTCTATGGCTTGTCCTATTTTCACCGGCTACGGTGTGAATTGATTCATCATCCCTAACTGGAGTAAAaaaaaga ]
[-] EMBL CB669765 [ CTTTAACACTTGGTGGAACCGTGCTTGGTTATTACCCTGTGAGAGTTCTGCCATCTAAGACCGCGATTTTGCCGGTGAACCCTAAATTTTTACCTCGAACAGAGGACGAGAAAGAAATGGTGTCAAGGACTGTGTATTGTACTAACATCGATAAGAATGTTCCTGAAGATGCTGTGAAGAGCTTCTTTGAGGGGATGTGTGGTGAAGTTGCTCGACTGAGGCTACTGGGTGATTATGTGCACTCCACATGCATCGCGTTTGTTGAGTTTGTTCAAGCAGACTCTGCTATTCTTGCTCTGAGTTGCAGTGGCATGGTCCTTGGAGCGCTTCCCGTCAGGGTGAGCCCGTCAAAGACACCGGTCCGGCCCCGTTCGCCCCGTGTGACGTCGCAATGAAACCCGGCTCTCTCATGTGAAGCCATCGTCCAGGGCAGCAAAGCCTCCTCTATAGTCTGTGTGGCCTTAGAGACCGTCTGTCGCGTCGCGGATCAGTAATTGTCGTCGAAGAGAGTTTGTCCTTTTGGTTATTTTACTAGTCTTAGCAGAAGGCCCCCTACATACCGCGATGATGTGTTCTTGGATCAGACAGAGACCAATCTGTATGTTCTCCGGGAGCTCTATTTTGACCCCCTCTCATCTCTCCTCTGCCCCCCAACTTATCACCCCCTTCCCTTTTGTTATTTTGTTATCGATGGATGCTGTAGCGGCCTTTGACAGGCATTGGAACAAATAATGTCTATG ]
[-] EMBL CB661023 [ TTTAACACTTGGTGGAACCGTGCTTGGTTATTACCCTGTGAGAGTTCTGCCATCTAAGACCGCGATTTTGCCGGTGAACCCTAAATTTTTACCTCGAACAGAGGACGAGAAAGAAATGGTGTCAAGGACTGTGTATTGTACTAACATCGATAAGAATGTTCCTGAAGATGCTGTGAAGAGCTTCTTTGAGGGGATGTGTGGTGAAGTTGCTCGACTGAGGCTACTGGGTGATTATGTGCACTCCACATGCATCGCGTTTGTTGAGTTTGTTCAAGCAGACTCTGCTATTCTTGCTCTGAGTTGCAGTGGCATGGTCCTTGGAGCGCTTCCCGTCAGGGTGAGCCCGTCAAAGACACCGGTCCGGCCCCGTTCGCCCCGTGTGACGTCGCACTGAAACCCGGCTCTCTCATCTGAAGCCATCGTCCAGGGCAGCAAAGCCTCCTCTCTAGTCTGTGTGGCCTTAGAGACCGTCTGTCGCGTCGCGGATCAGTAATTGTCGTCGAAGAGAGTTTGTCCTTTTGGTTATTCTACTAGTCTTAGCAGAAGGCCCCCTACATACCGCGCTGATGTGTTCTTGGATCAGACAGAGACCAATCTGTATGTTCTCCGGGAGCTCTATTTTGACCCCCTCTCATCTCTCCTGGGCCCCCCAACTTATCACCCCCTTCCCTTTTGTTATTTTGTTATCGATGGATGCTGTAGCGGCCTTTGACAGGCATTGGAACAAATAATGTCTATGGCTGGTCg ]
[-] EMBL CB660971 [ TGGTTATTACCCTGTGAGAGTTCTGCCATCTAAGACCGCGATTTTGCCGGTGAACCCTAAATTTTTACCTCGAACAGAGGACGAGAAAGAAATGGTGTCAAGGACTGTGTATTGTACTAACATCGATAAGAATGTTCCTGAAGATGCTGTGAAGAGCTTCTTTGAGGGGATGTGTGGTGAAGTTGCTCGACTGAGGCTACTGGGTGATTATGTGCACTCCACATGCATCGCGTTTGTTGAGTTTGTTCAAGCAGACTCTGCTATTCTTGCTATGAGTTGCAGTGGCATGGTCCTTGGAGCGCTTCCCGTCAGGGTGAGCCCGTCAAAGACACCGGTCCGGCCCCGTTCGCCCCGTGTGACGTCGCACTGAAACCCGGCTCTTTCATCTGAAGCCATCGTCCAGGGCAGCAAAGCCTCCTCTTTAGTCTGTGTGGCCTTAGAGACCGTCTGTCGCGTCGCGGATCAGTAATTGTCGTCGAAGAGAGTTTGTCCTTTTGGTTATTCTACTAGTCTTAGCAGAAGGCCCCCTACATACCGCGCTGATGTGTTCTTGGATCAGACAGAGACCAATCTGTATGTTCTCCGGGAGCTCTATTTTGACCCCCTCTCATCTCTCCTCTGCCCCCCAACTTATCACCCCCTTCCCTTTTGTTATTTTGTTATCGATGGATGCTGTAGCGGCCTTTGCCAGGCATTGGAACAAATAATGTCTATGGCTTGTCCTATTTTCACCGGCTACGCTGTGAATTGATTCATCATCCCTAAGTGGAGTAAACTCTGGTGGTGTTCATATTCGTGCAAAAAAAAAAAGA]
[+] EMBL AU068439 [ AGGACGAGAAAGAAATGGTGTCAAGGACTGTGTATTGTACTAACATCGATAAGAATGTTCCTGAAGATGCTGTGAAGAGCTTCTTTGAGGGGATGTGTGGTGAAGTTGCTCGACTGAGGCTACTGGGTGATTATGTGCACTCCACATGCATCGCGTTTGTTGAGTTTGTTCAAGCAGACTCTGCTATTCTTGCTCTGAGTTGCAGTGGCATGGTCCTTGGAGCGCTTCCCGTCAGGGTGAGCCCGTCAAAGACACCGGTCCGGCCCCGTTCGCCCCGTGTGACGTCGCACTGAAACCCGGCTCTCTCATCTGAAGCCATCGTCCAGGGCAGCAAAGCCTCCTCTCTAGTCTGTGTGGCCTTAGAGACCGTCTGTCGCGTCGCGGATCAGTAATTGTCGTCGAAGAGAGTTTGTCCTTTTGGTTATTCTACTAGTCTTAGCAGAAGGCCCCCTACATACCGCGCTGATGTGTTCTTGGATCAGACAGAGACCAATCTGTATGTTCTCCGGGAGCTCTATTTTGACCCCCTCTCATCTCTCCTCTGCCCCCCAACTTATCACCCCCTTCCCTTTTGTTATTTTGTTATCGATGGATGCTGTAGCGGCCTTTGACAGGCATTGGAACAAATAATGTCTATGGCTTGTCCTAaaaaaaaaa ]
[-] EMBL CB642113 [ AGAATGTTCCTGAAGATGCTGTGAAGAGCTTCTTTGAGGGGATGTGTGGTGAAGTTGCTCGACTGAGGCTACTGGGTGATTATGTGCACTCCACATGCATCGCGTTTGTTGAGTTTGTTCAAGCAGACTCTGCTATTCTTGCTCTGAGTTGCAGTGGCATGGTCCTTGGAGCGCTTCCCGTCAGGGTGAGCCCGTCAAAGACACCGGTCCGGCCCCGTTCGCCCCGTGTGACGTCGCACTGAAACCCGGCTCTCTCATGTGAAGCCATCGTCCAGGGCAGCAAAGCCTCCTCTCTAGTCTGTGTGGCCTTAGAGACCGTCTGTCGCGTCGCGGATCAGTAATTGTCGTCGAAGAGAGTTTGTCCTTTTGGTTATTCTACTAGTCTTAGCAGAAGGCCCCCTACATACCGCGCTGATGTGTTCTTGGATCAGACAGAGACCAATCTGTATGTTCTCCGGGAGCTCTATTTTGACCCCCTCTCATCTCTCCTCTGCCCCCCAACTTATCACCCCCTTCCCTTTTGTTATTTTGTTATCGATGGATGCTGTAGCGGCCTTTGACAGGCATTGGAACAAATAATGTCTATGGCTTGTCCTATTTTCACCGGCTACGCTGTGAATTGATTCATCATCCCTAACTGGAGTAAACTCTGGTGGTGTTCAaaaaaaaag ]
[+] EMBL CF327268 [ gagtagaaaGGCCCCGTTCGCCCCGTGTGACGTCGCACTGAAACCCGGCTCTCTCATCTGAAGCCATCGTCCAGGGCAGCAAAGCCTCCTCTCTAGTCTGTGTGGCCTTAGAGACCGTCTGTCGCGTCGCGGATCAGTAATTGTCGTCGAAGAGAGTTTGTCCTTTTGGTTATTCTACTAGTCTTAGCGGAAGGCCCCCTACATACCGCGCTGATGTGTTCTTGGATCAGACAGAGACCAATCTGTATGTTCTCCGGGAGCTCTATTTTGACCCCCTCTCATCTCTCCTCTGCCCCCCAACTTATCACCCCCTTCCCTTTTGTTATTTTGTTATCGATGGATGCTGTAGCGGCCTTTGACAGGCATTGGAACAAATAATGTCTATGGCTTGTCCTATTTTCAaaa ]
[-] EMBL CF327267 [ CGCCCCGTGTGACGTCGCACTGAAACCCGGCTCTCTCATCTGAAGCCATCGTCCAGGGCAGCAAAGCCTCCTCTCTAGTCTGTGTGGCCTTAGAGACCGTCTGTCGCGTCGCGGATCAGTAATTGTCGTCGAAGAGAGTTTGTCCTTTTGGTTATTCTACTAGTCTTAGCGGAAGGCCCCCTACATACCGCGCTGATGTGTTCTTGGATCAGACAGAGACCAATCTGTATGTTCTCCGGGAGCTCTATTTTGACCCCCTCTCATCTCTCCTCTGCCCCCCAACTTATCACCCCCTTCCCTTTTGTTATTTTGTTATCGATGGATGCTGTAGCGGCCTTTGACAGGCATTGGAACAAATAATGTCTATGGCTTGTCCTATTTTCAaaaa ]
consensusID : consensus_14082#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1063 fasta sequence
[GGAGGCGGAGGCGGCGGGGAAGGATGGCGGGGAGGAGGTGAGGGAGTACAAGAGCGACGCGAG-GAAGCTGGAGGAGCTGTTCAAGAAGCTGAACCCGTCGGCCGAGGAGTTCGTGCCGCTGGCGCGCCGCCGCGGCGGCGGGGACGGCGCGCGCCGGCTGTCGGCGGACGCGCCCGTGTTCGTGTCCCCCGCGATCGACTTCTACTCGCAACACCCGGTGCAGCAGCCGCCGCCGATCCAGGTGCTCCCCGTGGTGGTGGGCGGTGGCGGGGGCGCGGGATTGGACTCCAGCAGCGACGGATCCACCAACGGCCAGCCGAATCGTCGGAGAAGGAGTAGCTTCAACCAAGGGAGGAGGAGGATGGGAGGCCGACCAAGGCGAACTGATAGGGAGGATAGTGTGCGGCGAACTGTCTATGTATCTGACATTGATCAGCATGTGACTGAACAGAAGCTTGCTGAAGTTTTCTCAAATTGCGGACAAGTGGTAGATTGCCGTATATGTGGTGACCCAAATTCAGTGCTGCGTTTTGCCTTTATCGAGTTTGCCGATGATGTTGGTGCAAGAGCAGCTTTAACACTTGGTGGAACCGTGCTTGGTTATTACCCTGTGAGAGTTCTGCCATCTAAGACCGCGAGTTTGCCTGTGAACCCTAAATTTTTACCTCGAACAGAGGGACGAGAAAGAAATGGTGTCAAGGACTGTGTATTGACTAACATCGATAAGATGGTCCTGAAGATGCTGTGAAGAGCTTCTTTGAGGGGATGTGTGGTGAAATTGCTCGACTTGAGCTTCTGGGTGATTATGTGCACTCCACATGCATTCGCGGTTGGTTGAGTTTTGTTCAAGCAGACCTCTGCTATTTCTTGTCTTTGAGGTTGCAGGGGATTGGGCCCTTGAGGCGCTTTCCGTTAGGGGTGAGCCCGATAAAGACACACCGGTCCCGGCCCCGTTCGTCCCGGGTGAAGTGAGACTTGAAACCCGGGTGTTTTATATTTAAGGCATCTGTTCAGGGGCATCAAACACTCTCTTTTATTTTTGTTGTGGCTTAAAAACCCGTTT]
[+] EMBL CF324033 [GGAGGCGGAGGCGGCGGGGAAGGATGGCGGGGAGGAGGTGAGGGAGTACAAGAGCGACGCGAG GAAGCTGGAGGAGCTGTTCAAGAAGCTGAACCCGTCGGCCGAGGAGTTCGTGCCGCTGGCGCGCCGCCGCGGCGGCGGGGACGGCGCGCGCCGGCTGTCGGCGGACGCGCCCGTGTTCGTGTCCCCCGCGATCGACTTCTACTCGCAACACCCGGTGCAGCAGCCGCCGCCGATCCAGGTGCTCCCCGTGGTGGTGGGCGGTGGCGGGGGCGCGGGATTGGACTCCAGCAGCGACGGATCCACCAACGGCCAGCCGAATCGTCGGAGAAGGAGTAGCTTCAACCAAGGGAGGAGGAGGATGGGAGGCCGACCAAGGCGAACTGATAGGGAGGATAGTGTGCGGCGAACTGTCTATGTATCTGACATTGATCAGCATGTGACTGAACAGAAGCTTGCTGAAGTTTTCTCAAATTGCGGACAAGTGGTAGATTGCCGTATATGTGGTGACCCAAATTCAGTGCTGCGTTTTGCCTTTATCGAGTTTGCCGATGATGTTGGTGCAAGAGCAGCTTTAACACTTGGTGGAACCGTGCTTGG ]
[+] EMBL AU068440 [ ngnnAGGAGGTGAGGGAGTACAAGANCGACGCGAGNGAAGCTGGAGGAGCTGTTCAAGAAGCTGAACCCGTCGGCCGAGGAGTTCGTGCCGCTNGCGCGCCGCCGCGGCGGCGGNAACNGCGCGCGCCGGCTGTCGGCGGACGCGCCCNTNTTCGTGTCCCCCGCGATCGACTTCTACTCGC ]
[+] EMBL BE040570 [ GAAGCTGGAGGAGCTGTTCAAGAAGCTGAACCCGTCGGCCGAGGAGTTCGTGCCGCTGGCGCGCCGCCGCGGCGGCGGGGACGGCGCGCGCCGACTGTCGGCGGACGCGCCCGTGTTCGTGTCCCCCGCGATCGACTTCTACTCGCAACACCCGGTGCAGCAGCCGCCGCCGATCCAGGTGCTCCCCGTGGTGGTGGGCGGTGGCGGGGGCGCGGGATTGGACTCCAGCAGCGACGGATCCACCAACGGCCAGCCGAATCGTCGGAGAAGGAGTAGCTTCAACCAAGGGAGGAGGAGGATGGGAGGCCGACCACGGCGAACTGATAGGGAGGATAGTGTGCGGCGAACTGTCTATGTATCTGACATTGATCAGCATGTGACTGAACAGAAGCTTGCTGAAGTTTTCTCAAATTGCGGACAAGTGGTAGATTGCCGTATATGTGGTGACCCAAATTCAGTGCTGCGTTTTGCCTTTATCGAGTTTGCCGATGATGTTGGTGCAAGAGCAGCTTTAACACTTGGTGGAACCGTGCTTGGTTATTACCCTGTGAGAGTTCTGCCATCTAAGACCGCGAGTTTGCCTGTGAACCCTAAATTTTTACCTCGAACAGAGGGACGAGAAAGAAATGGTGTCAAGGACTGTGTATTGACTAACATCGATAAGATGGTCCTGAAGATGCTGTGAAGAGCTTCTTTGAGGGGATGTGTGGTGAAATTGCTCGACTTGAGCTTCTGGGTGATTATGTGCACTCCACATGCATTCGCGGTTGGTTGAGTTTTGTTCAAGCAGACCTCTGCTATTTCTTGTCTTTGAGGTTGCAGGGGATTGGGCCCTTGAGGCGCTTTCCGTTAGGGGTGAGCCCGATAAAGACACACCGGTCCCGGCCCCGTTCGTCCCGGGTGAAGTGAGACTTGAAACCCGGGTGTTTTATATTTAAGGCATCTGTTCAGGGGCATCAAACACTCTCTTTTATTTTTGTTGTGGCTTAAAAACCCGTTT]
consensusID : consensus_14082#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 709 fasta sequence
[CGACGGATCCACCAACGGCCAGCCGAATCGTCGGAGAAGGAGTATCTTCAACCAAGGGAGGAGGAGGATGGGAGGCCGACCAAGGCGAACTGATAGGGAGGATAGTGTGCGGCGAACTGTCTATGTATCTGACATTGATCAGCATGTGACTGAACAGAAGCTTGCTGAAGTTTTCTCAAATTGCGGACAATATTTTGCAGAGTAGATTTAAATTCATTTTGGTTAATACTTTATAACACCAGAGTGACAAAGAGTGATTTTGCATTGTAAGTATGGAGCACAACTTTTCTCTATGGTAAATGACTAAATGCAGTTGGGTGCAACCCTAGAGGTATGATTCACTTGAATGCCACTCTAGAACAAGTACAGCAGTTACTTTCGACAGCTGCTTGTTTTAGATTGTGACCTTGCCCGGCCTGAATGGATTGTGACTTAGCACCTAGACAAGACCAACTTGTCACAATAATTTATTATTGGCAAGAGGTAATAGTTTCTGAAAAAAAGGGAGATCACAAGATGAGAAATGGAAGAAACTTGCACGAAAGCAACAGTGGTAGATTGCCGTATATGTGGTGACCCAAATTCAGTGCTGCGTTTTGCCTTTATCAAGTTTGCCGATGATGTTGGTGCAAGAGCAGCTTTAACACTTGGTGGAACCGCGCTTGGTTATTACCCTGTGAGAGTTCTGCCATCTAAGACCGCGATTTTG]
[+] EMBL CB681495 [CGACGGATCCACCAACGGCCAGCCGAATCGTCGGAGAAGGAGTATCTTCAACCAAGGGAGGAGGAGGATGGGAGGCCGACCAAGGCGAACTGATAGGGAGGATAGTGTGCGGCGAACTGTCTATGTATCTGACATTGATCAGCATGTGACTGAACAGAAGCTTGCTGAAGTTTTCTCAAATTGCGGACAATATTTTGCAGAGTAGATTTAAATTCATTTTGGTTAATACTTTATAACACCAGAGTGACAAAGAGTGATTTTGCATTGTAAGTATGGAGCACAACTTTTCTCTATGGTAAATGACTAAATGCAGTTGGGTGCAACCCTAGAGGTATGATTCACTTGAATGCCACTCTAGAACAAGTACAGCAGTTACTTTCGACAGCTGCTTGTTTTAGATTGTGACCTTGCCCGGCCTGAATGGATTGTGACTTAGCACCTAGACAAGACCAACTTGTCACAATAATTTATTATTGGCAAGAGGTAATAGTTTCTGAAAAAAAGGGAGATCACAAGATGAGAAATGGAAGAAACTTGCACGAAAGCAACAGTGGTAGATTGCCGTATATGTGGTGACCCAAATTCAGTGCTGCGTTTTGCCTTTATCAAGTTTGCCGATGATGTTGGTGCAAGAGCAGCTTTAACACTTGGTGGAACCGCGCTTGGTTATTACCCTGTGAGAGTTCTGCCATCTAAGACCGCGATTTTG]
consensusID : consensus_14082#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 530 fasta sequence
[GAAGCTGGAGGAGCTGTTCAAGAAGCTGAACCCGTCGGCCGAGGAGTTCGTGCCGCTGGCGCGCCGCCGCGGCGGCGGGGACGGCGCGCGCCGGCTGTCGGCGGACGCGCCCGTGTTCGTGTCCCCCGCGATCGACTTCTACTTGCAACACCCGGTGCAGCAGCCGCCGCCGATCCAGGTGCTCCCCGTGGTGGTGGGCGGTGGCGGGGGCGCGGGATTGGACTCCAGCAGCGACGGGTCCACCAACGGCCAGCCGAATCGTCGGGTAATCGATCGCCTAATCGCGCTGCTGGGTTCGGTGCGATTAGTTTCGCTGTGGGGGGTTTGGCGTAGATTCATTGTGGCATGATCGATCTCTATCGATCGATCGATCGATCGATTGGGATTTGGGGTTTAGGGTGATGTTGTTGTCTTCATTGCCGGAGTTTTGGTCTCTGACGCGATCATTCCAGAATGTTGATTCATGGGCGAGGGGGGTTTAGTTCTAGTTAGGTTATGATATTTATGTGATCAATTTAAGACGAATTTTC]
[+] EMBL AK111086 [GAAGCTGGAGGAGCTGTTCAAGAAGCTGAACCCGTCGGCCGAGGAGTTCGTGCCGCTGGCGCGCCGCCGCGGCGGCGGGGACGGCGCGCGCCGGCTGTCGGCGGACGCGCCCGTGTTCGTGTCCCCCGCGATCGACTTCTACTTGCAACACCCGGTGCAGCAGCCGCCGCCGATCCAGGTGCTCCCCGTGGTGGTGGGCGGTGGCGGGGGCGCGGGATTGGACTCCAGCAGCGACGGGTCCACCAACGGCCAGCCGAATCGTCGGGTAATCGATCGCCTAATCGCGCTGCTGGGTTCGGTGCGATTAGTTTCGCTGTGGGGGGTTTGGCGTAGATTCATTGTGGCATGATCGATCTCTATCGATCGATCGATCGATCGATTGGGATTTGGGGTTTAGGGTGATGTTGTTGTCTTCATTGCCGGAGTTTTGGTCTCTGACGCGATCATTCCAGAATGTTGATTCATGGGCGAGGGGGGTTTAGTTCTAGTTAGGTTATGATATTTATGTGATCAATTTAAGACGAATTTTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14082#0 ------------------------------------------------------------
consensus_14082#1 ----------------------------------------GGAGGCGGAGGCGGCGGGGA 20
consensus_14082#3 ------------------------------------------------------------
consensus_14082#2 CGACGGATCCACCAACGGCCAGCCGAATCGTCGGAGAAGGAGTATCTTCAACCAAGGGAG 60
consensus_14082#0 ------------------------------------------------------------
consensus_14082#1 AGGATGGCGGGGAGGAGGTGAGGGAGTACAAGAGCGACGCGAGGAAGCTGGAGGAGCTGT 80
consensus_14082#3 -------------------------------------------GAAGCTGGAGGAGCTGT 17
consensus_14082#2 GAGGAGGATGGGAGGCCGACCAAGGCGAACTGATAGGGAGGATAGTGTGCGGCGAACTGT 120
consensus_14082#0 ------------------------------------------------------------
consensus_14082#1 TCAAGAAGCTGA-ACCCGTCGGCCGAGGAGTT--CGTGCCGCTGGCGCGCCGCCGCGGCG 137
consensus_14082#3 TCAAGAAGCTGA-ACCCGTCGGCCGAGGAGTT--CGTGCCGCTGGCGCGCCGCCGCGGCG 74
consensus_14082#2 CTATGTATCTGACATTGATCAGCATGTGACTGAACAGAAGCTTGCTGAAGTTTTCTCAAA 180
consensus_14082#0 --------------------------------------------------GCGTGCGATC 10
consensus_14082#1 GCGGGGACGGCGCGC-GCCGGCTGTCGGCGGACGCGCCCGTGTTCGTGTCCCCCGCGATC 196
consensus_14082#3 GCGGGGACGGCGCGC-GCCGGCTGTCGGCGGACGCGCCCGTGTTCGTGTCCCCCGCGATC 133
consensus_14082#2 TTGCGGACAATATTTTGCAGAGTAGATTTAAATTCATTTTGGTTAATACTTTATAACACC 240
* *
consensus_14082#0 GGAGGCGGCCGGGCTCGATCGAT-------CCGCCGCCGATCCAGGTGCTCCCCGTGGTG 63
consensus_14082#1 GACTTCTACTCGCAACACCCGGTGCAGCAGCCGCCGCCGATCCAGGTGCTCCCCGTGGTG 256
consensus_14082#3 GACTTCTACTTGCAACACCCGGTGCAGCAGCCGCCGCCGATCCAGGTGCTCCCCGTGGTG 193
consensus_14082#2 AGAGTGACAAAGAGTGATTTTGCATTGTAAGTATGG--AGCACAACTTTTCTCTATGGTA 298
* * ** * ** * ****
consensus_14082#0 G-TGGGCGGTGGCGG--GGGCGC-------GGGATTGGACTCCAGCAGCGACGGATCCAC 113
consensus_14082#1 G-TGGGCGGTGGCGG--GGGCGC-------GGGATTGGACTCCAGCAGCGACGGATCCAC 306
consensus_14082#3 G-TGGGCGGTGGCGG--GGGCGC-------GGGATTGGACTCCAGCAGCGACGGGTCCAC 243
consensus_14082#2 AATGACTAAATGCAGTTGGGTGCAACCCTAGAGGTATGATTCACTTGAATGCCACTCTAG 358
** ** * *** ** * * * ** ** * ** *
consensus_14082#0 CAACGGC-CAGCCGAATCGTCGGAGAAGGAGTAGCTTCAACCAAGGGAGGAGGAGGATGG 172
consensus_14082#1 CAACGGC-CAGCCGAATCGTCGGAGAAGGAGTAGCTTCAACCAAGGGAGGAGGAGGATGG 365
consensus_14082#3 CAACGGC-CAGCCGAATCGTCGGGTAATCGATCGCCTAATCGCGCTGCTGGGTTCGGTGC 302
consensus_14082#2 AACAAGTACAGCAGTTACTTTCGACAGCTGCTTGTTTTAGATTGTGACCTTGCCCGGCCT 418
* * **** * * * * * * * * * * *
consensus_14082#0 GA---GGCCGACCAAGGCGAACTGATAGGGAGGATAGTGT-GCGGCGAACTGTCTATGT- 227
consensus_14082#1 GA---GGCCGACCAAGGCGAACTGATAGGGAGGATAGTGT-GCGGCGAACTGTCTATGT- 420
consensus_14082#3 GATTAGTTTCGCTGTGGGGGGTTTGGCGTAGATTCATTGT-GGCATGATCGATCTCTATC 361
consensus_14082#2 GAATGGATTGTGACTTAGCACCTAGACAAGACCAACTTGTCACAATAATTTATTATTGGC 478
** * * *** * * *
consensus_14082#0 -------ATCTGAC-ATTGATCAGCATGTGACTGAACAGAAGCTTGCTGAAGTTTTCTCA 279
consensus_14082#1 -------ATCTGAC-ATTGATCAGCATGTGACTGAACAGAAGCTTGCTGAAGTTTTCTCA 472
consensus_14082#3 G------ATCGATCGATCGATCGATTGGGATTTGGGGTTTAGGGTGATGTTGTTGTCTTC 415
consensus_14082#2 AAGAGGTAATAGTTTCTGAAAAAAAGGGAGATCACAAGATGAGAAATGGAAGAAACTTGC 538
* * * * * * *
consensus_14082#0 AATTGCGGACAAGTGGTAGATTGC-CGTATATGTGGTGACCCAAATTCAGTGCTGCGTTT 338
consensus_14082#1 AATTGCGGACAAGTGGTAGATTGC-CGTATATGTGGTGACCCAAATTCAGTGCTGCGTTT 531
consensus_14082#3 ATTGCCGGAGTTTTGGTCTCTGACGCGATCATTCCAGAATGTTGATTCATGGGCGAGGGG 475
consensus_14082#2 ACGAAAGCAACAGTGGTAGATTGC-CGTATATGTGGTGACCCAAATTCAGTGCTGCGTTT 597
* * * **** * * ** ** * ***** * * *
consensus_14082#0 TGCCTTTATCGAGTTTGCCGATGATGTTGGTGCAAGAGCAGCTTTAACACTTGGTGGAAC 398
consensus_14082#1 TGCCTTTATCGAGTTTGCCGATGATGTTGGTGCAAGAGCAGCTTTAACACTTGGTGGAAC 591
consensus_14082#3 GGTTTAGTTCTAGTTAGGTTATGATATTTATGT--GATCAA-TTTAAGACGAATTTTC-- 530
consensus_14082#2 TGCCTTTATCAAGTTTGCCGATGATGTTGGTGCAAGAGCAGCTTTAACACTTGGTGGAAC 657
* * ** **** * ***** ** ** ** ** ***** ** *
consensus_14082#0 CGTGCTTGGTTATTACCCTGTGAGAGTTCTGCCATCTAAGACCGCGATTTTGCCGGTGAA 458
consensus_14082#1 CGTGCTTGGTTATTACCCTGTGAGAGTTCTGCCATCTAAGACCGCGAGTTTGCCTGTGAA 651
consensus_14082#3 ------------------------------------------------------------
consensus_14082#2 CGCGCTTGGTTATTACCCTGTGAGAGTTCTGCCATCTAAGACCGCGATTTTG-------- 709
consensus_14082#0 CCCTAAATTTTTACCTCGAACAGAGG-ACGAGAAAGAAATGGTGTCAAGGACTGTGTATT 517
consensus_14082#1 CCCTAAATTTTTACCTCGAACAGAGGGACGAGAAAGAAATGGTGTCAAGGACTGTGTATT 711
consensus_14082#3 ------------------------------------------------------------
consensus_14082#2 ------------------------------------------------------------
consensus_14082#0 GTACTAACATCGATAAGAATGTTCCTGAAGATGCTGTGAAGAGCTTCTTTGAGGGGATGT 577
consensus_14082#1 G-ACTAACATCGATAAGA-TGGTCCTGAAGATGCTGTGAAGAGCTTCTTTGAGGGGATGT 769
consensus_14082#3 ------------------------------------------------------------
consensus_14082#2 ------------------------------------------------------------
consensus_14082#0 GTGGTGAAGTTGCTCGACTGAGGCTACTGGGTGATTATGTGCACTCCACATGCAT-CGCG 636
consensus_14082#1 GTGGTGAAATTGCTCGACTTGAGCTTCTGGGTGATTATGTGCACTCCACATGCATTCGCG 829
consensus_14082#3 ------------------------------------------------------------
consensus_14082#2 ------------------------------------------------------------
consensus_14082#0 TTTG-TTGAGTTT-GTTCAAGCAGAC-TCTGCTATT-CTTG-CTCTGAG-TTGCAGTGGC 690
consensus_14082#1 GTTGGTTGAGTTTTGTTCAAGCAGACCTCTGCTATTTCTTGTCTTTGAGGTTGCAGGGGA 889
consensus_14082#3 ------------------------------------------------------------
consensus_14082#2 ------------------------------------------------------------
consensus_14082#0 ATGG-TCCTTGGAGCGCTTCCCGTCAGGG-TGAGCCCGTCAAAGACAC--CGGTCC-GGC 745
consensus_14082#1 TTGGGCCCTTGAGGCGCTTTCCGTTAGGGGTGAGCCCGATAAAGACACACCGGTCCCGGC 949
consensus_14082#3 ------------------------------------------------------------
consensus_14082#2 ------------------------------------------------------------
consensus_14082#0 CCCGTTCGCCCCGTGTGACGTCGCACT-GAAACCCGGCTCTCTCAT-CTGAAGCCATC-G 802
consensus_14082#1 CCCGTTCGTCCCGGGTGAAGTGAGACTTGAAACCCGGGTGTTTTATATTTAAGGCATCTG 1009
consensus_14082#3 ------------------------------------------------------------
consensus_14082#2 ------------------------------------------------------------
consensus_14082#0 TCCAGGG-CAGCAAAGCCTCCTCTCTAGTCTG--TGTGGCCTTAGAGACCGTCTGTCGCG 859
consensus_14082#1 TTCAGGGGCATCAAACACTCTCTTTTATTTTTGTTGTGGCTTAAAAACCCGTTT------ 1063
consensus_14082#3 ------------------------------------------------------------
consensus_14082#2 ------------------------------------------------------------
consensus_14082#0 TCGCGGATCAGTAATTGTCGTCGAAGAGAGTTTGTCCTTTTGGTTATTCTACTAGTCTTA 919
consensus_14082#1 ------------------------------------------------------------
consensus_14082#3 ------------------------------------------------------------
consensus_14082#2 ------------------------------------------------------------
consensus_14082#0 GCAGAAGGCCCCCTACATACCGCGCTGATGTGTTCTTGGATCAGACAGAGACCAATCTGT 979
consensus_14082#1 ------------------------------------------------------------
consensus_14082#3 ------------------------------------------------------------
consensus_14082#2 ------------------------------------------------------------
consensus_14082#0 ATGTTCTCCGGGAGCTCTATTTTGACCCCCTCTCATCTCTCCTCTGCCCCCCAACTTATC 1039
consensus_14082#1 ------------------------------------------------------------
consensus_14082#3 ------------------------------------------------------------
consensus_14082#2 ------------------------------------------------------------
consensus_14082#0 ACCCCCTTCCCTTTTGTTATTTTGTTATCGATGGATGCTGTAGCGGCCTTTGACAGGCAT 1099
consensus_14082#1 ------------------------------------------------------------
consensus_14082#3 ------------------------------------------------------------
consensus_14082#2 ------------------------------------------------------------
consensus_14082#0 TGGAACAAATAATGTCTATGGCTTGTCCTATTTTCACCGGCTACGCTGTGAATTGATTCA 1159
consensus_14082#1 ------------------------------------------------------------
consensus_14082#3 ------------------------------------------------------------
consensus_14082#2 ------------------------------------------------------------
consensus_14082#0 TCATCCCTAACTGGAGTAAACTCTGGTGGTGTTCATATTCGTGCAAAAAAAAAAAGA 1216
consensus_14082#1 ---------------------------------------------------------
consensus_14082#3 ---------------------------------------------------------
consensus_14082#2 ---------------------------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||