These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14084#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1552 fasta sequence [GTAGTGTGTAGCGTGTAGTGTGTGTCACGATGTCGCGCGCCATGGCGGCCTCCAGGCGGGTCTCGGTGTTCGTCGCCGCGTTGGTCTTGCTGCTCCCTCGTGCGGCTCTCCCGTGTGCGGCGGCTGGCGGCGGCGGGCCGCGGGCGCCGCACTCCACCTCGCATGTTCCGCTTCGTGCGCCTCGCTGCACGGCCACCGGCCCCCTCGTCTGTGTCCCGCCCGCTCTCCTTCAGCATCGTCGGCAAGTACCCCT-AC-GGCATG-ACATACTTCCACCGCCCCACCGGCCGCTGCTCCGACGGCCGCCTCGTCGTCGACTTCCTCGCGCAAGCGTTCGGGCTGCCGCTGCTGCAGCCGTACCTGTCGCGCGGC-GAGGACGTCACGCGG-GGCGTCAAC-T-TCGCCGTCG-GCGGCGCGACGGCCATGGATCCGCCGTTCTTCGAGGAGATCGGCGCGTCCGACAAGCTCTGGACCAACCTGTCGCTCAGCGTCCAGCTCGGCTGGTTCGAGCAGCTCAAGCCCTCACTCTGCAGCTCACCCAAAGATTGCAAGGAGTTCTTCAGCAAGTCACTCTTCCTCGTCGGGGAGATTGGGGGAAACGACTACAACTACGCCTTCTTCAAGGGCAAGAGCTTGGACGACGCCAAATCCTACGTCCCCACCGTCGCCGGCGCCGTCGCCGACGCCACCGAAAGGCTGATCAAGGCAGGGGCGGTGCACCTGGTGGTGCCCGGGAACCTGCCGATCGGCTGCTCGTCAGCGTACCTGACGCTGCACCCGAGCAGCAACAGGAGCGACTACGACTCCACCGGCTGCCTCAAGACGTACAACGACTTCGCCCAGCACCACAACGCCGTGCTCCAGGACAAGCTCCGGCTGCTTCGCCGGAGCTACCCGGAGGCCAGGATCATGTACGCCGACTACTACGGCGCCGCCATGTCCTTCGCCCAGAACCCCAAGCA-GTTCGGG-TTCAGGCACGGGGCGC-TGAGGACGT-GCTGCGGC-GGCGGAGGGCCG-TACAACTTCAA-CCCGAAGGCGAGCTGCGGCGTGCGGGGC-TCCAGCGTGTGCACGGA-CCCGTCGGCGTACGCCAACTGGGACGGCGTCCACCTGACGGAGGCCGGCTACCACGCCATCGCCAACAGCATCCTCAATGGCCCTTACACCAGCCCAAGGCTGCTCTGACCATCCCCCGTTCTCTCGACCTGGTGTTAGCTGCTGCTGCTGCTGCTGCACTCTGCAATGTAAACTGATCTGTAATGTAGTGATATGAGCTAGTGGTGGTTTTGAGTTTTGACAGTGTGTGGGCTTTGGCTACTTGAGTCTCCAGGCACAGTACAGTATGTCTGTCGAGTGTCATCAGCTTTGGGCGTGACTGTGTCCGTGCTACTTTTGACTTTGCAAGTACTGAATTATAGTACTCAGCACAACTGCACAAACCTTTCTTTCATGTGTTACGTCTGGATTTCACGAGACGAGTTGAAATCAGGCGGTATATATATATACGTCTGGATTTCAGAACAATTAGTTTCAGAAACATACGGCGTGGCATACACCAGTCAAA] [+] EMBL CB965697 [GTAGTGTGTAGCGTGTAGTGTGTGTCACGATGTCGCGCGCCATGGCGGCCTCCAGGCGGGTCTCGGTGTTCGTCGCCGCGTTGGTCTTGCTGCTCCCTCGTGCGGCTCTCCCGTGTGCGGCGGCTGGCGGCGGCGGGCCGCGGGCGCCGCACTCCACCTCGCATGTTCCGCTTCGTGCGCCTCGCTGCACGGCCACCGGCCCCCTCGTCTGTGTCCCGCCCGCTCTCCTTCAGCATCGTCGGCAAGTACCCCTCACTGGCATGCACATACTTCCACCGCCCCACCGGCCGCTGCTCCGACGGCCGCCTCGTCGTCGACTTCCTCGCGCAAGCGTTCGGGCTGACGATGCTGCAGCCGTACCTGTCGCGCGGCAGAGGACGTCCCGCGGAGGCGTCAACATATCGCCGACGAGCGGCGCGAAGG ] [+] EMBL C74787 [ caGCCCGCTCNCCTTCAGCATCNTCGGCAAGTACCCCT AC GGCATG ACATACTTCCACCGCCCCACCGGCCGCTGCTCCGACGGCCGCCTCGTCGTCGACTTCCTCGCGCAANGTTTCGGGCTGCCGCTGCTGCAGCCGTACCTGTCGCGCGGC GAGGACGTCACGCGG GGCGTCAAC T TCGCCGTCG G GGCGCGACGGCCATGGATCCGCCGTTCTTCGAGGAGATCGGCGCGTCCGACAAGCTCTGGACCAACCTGTCGCTCAGCGTCCAGCTCGGCTGGTTCGAGCAGCTCAAGCCCTCACTCTGCAGCTCAACCAAAGATTGCA ] [+] EMBL AK119642 [ ATCGTCGGCAAGTACCCCT AC GGCATG ACATACTTCCACCGCTCCACCGGCCGCTGCTCCGACGGCCGCCTCGTCGTCGACTTCCTCGCGCAAGCGTTCGGGCTGCCGCTGCTGCAGCCGTACCTGTCGCGCGGC GAGGACGTCACGCGG GGCGTCAAC T TCGCCGTCG GCGGCGCGACGGCCATGGATCCGCCGTTCTTCGAGGAGATCGGCGCGTCCGACAAGCTCTGGACCAACCTGTCGCTCAGCGTCCAGCTCGGCTGGTTCGAGCAGCTCAAGCCCTCACTCTGCAGCTCACCCAAAGATTGCAAGGAGTTCTTCAGCAAGTCACTCTTCCTCGTCGGGGAGATTGGGGGAAACGACTACAACTACGCCTTCTTCAAGGGCAAGAGCTTGGACGACGCCAAATCCTACGTCCCCACCGTCGCCGGCGCCGTCGCCGACGCCACCGAAAGGCTGATCAAGGCAGGGGCGGTGCACCTGGTGGTGCCCGGGAACCTGCCGATCGGCTGCTCGTCAGCGTACCTGACGCTGCACCCGAGCAGCAACAGGAGCGACTACGACTCCACCGGCTGCCTCAAGACGTACAACGACTTCGCCCAGCACCACAACGCCGTGCTCCAGGACAAGCTCCGGCTGCTTCGCCGGAGCTACCCGGAGGCCAGGATCATGTACGCCGACTACTACGGCGCCGCCATGTCCTTCGCCCAGAACCCCAAGCA GTTCGGG TTCAGGCACGGGGCGC TGAGGACGT GCTGCGGC GGCGGAGGGCCG TACAACTTCAA CCCGAAGGCGAGCTGCGGCGTGCGGGGC TCCAGCGTGTGCACGGA CCCGTCGGCGTACGCCAACTGGGACGGCGTCCACCTGACGGAGGCCGGCTACCACGCCATCGCCAACAGCATCCTCAATGGCCCTTACACCAGCCCAAGGCTGCTCTGACCATCCCCCGTTCTCTCGACCTGGTGTTAGCTGCTGCTGCTGCTGCTGCACTCTGCAATGTAAACTGATCTGTAATGTAGTGATATGAGCTAGTGGTGGTTTTGAGTTTTGACAGTGTGTGGGCTTTGGCTACTTGAGTCTCCAGGCACAGTACAGTATGTCTGTCGAGTGTCATCAGCTTTGGGCGTGACTGTGTCCGTGCTACTTTTGACTTTGCAAGTACTGAATTATAGTACTCAGCACAACTGCACAAA ] [+] EMBL AK059088 [ ATCGTCGGCAAGTACCCCT AC GGCATG ACATACTTCCACCGCCCCACCGGCCGCTGCTCCGACGGCCGCCTCGTCGTCGACTTCCTCGCGCAAGCGTTCGGGCTGCCGCTGCTGCAGCCGTACCTGTCGCGCGGC GAGGACGTCACGCGG GGCGTCAAC T TCGCCGTCG GCGGCGCGACGGCCATGGATCCGCCGTTCTTCGAGGAGATCGGCGCGTCCGACAAGCTCTGGACCAACCTGTCGCTCAGCGTCCAGCTCGGCTGGTTCGAGCAGCTCAAGCCCTCACTCTGCAGCTCACCCAAAGATTGCAAGGAGTTCTTCAGCAAGTCACTCTTCCTCGTCGGGGAGATTGGGGGAAACGACTACAACTACGCCTTCTTCAAGGGCAAGAGCTTGGACGACGCCAAATCCTACGTCCCCACCGTCGCCGGCGCCGTCGCCGACGCCACCGAAAGGCTGATCAAGGCAGGGGCGGTGCACCTGGTGGTGCCCGGGAACCTGCCGATCGGCTGCTCGTCAGCGTACCTGACGCTGCACCCGAGCAGCAACAGGAGCGACTACGACTCCACCGGCTGCCTCAAGACGTACAACGACTTCGCCCAGCACCACAACGCCGTGCTCCAGGACAAGCTCCGGCTGCTTCGCCGGAGCTACCCGGAGGCCAGGATCATGTACGCCGACTACTACGGCGCCGCCATGTCCTTCGCCCAGAACCCCAAGCA GTTCGGG TTCAGGCACGGGGCGC TGAGGACGT GCTGCGGC GGCGGAGGGCCG TACAACTTCAA CCCGAAGGCGAGCTGCGGCGTGCGGGGC TCCAGCGTGTGCACGGA CCCGTCGGCGTACGCCAACTGGGACGGCGTCCACCTGACGGAGGCCGGCTACCACGCCATCGCCAACAGCATCCTCAATGGCCCTTACACCAGCCCAAGGCTGCTCTGACCATCCCCCGTTCTCTCGACCTGGTGTTAGCTGCTGCTGCTGCTGCTGCACTCTGCAATGTAAACTGATCTGTAATGTAGTGATATGAGCTAGTGGTGGTTTTGAGTTTTGACAGTGTGTGGGCTTTGGCTACTTGAGTCTCCAGGCACAGTACAGTATGTCTGTCGAGTGTCATCAGCTTTGGGCGTGACTGTGTCCGTGCTACTTTTGACTTTGCAAGTACTGAATTATAG ] [+] EMBL CB644926 [ ATCGTCGGCAAGTACCCCT AC GGCATG ACATACTTCCACCGCCCCACCGGCCGCTGCTCCGACGGCCGCCTCGTCGTCGACTTCCTCGCGCAAGCGTTCGGGCTGCCGCTGCTGCAGCCGTACCTGTCGCGCGGC GAGGACGTCACGCGG GGCGTCAAC T TCGCCGTCG GCGGCGCGACGGCCATGGATCCGCCGTTCTTCGAGGAGATCGGCGCGTCCGACAAGCTCTGGACCAACCTGTCGCTCAGCGTCCAGCTCGGCTGGTTCGAGCAGCTCAAGCCCTCACTCTGCAGCTCACCCAAAGATTGCAAGGAGTTCTTCAGCAAGTCACTCTTCCTCGTCGGGGAGATTGGGGGAAACGACTACAACTACGCCTTCTTCAAGGGCAAGAGCTTGGACGACGCCAAATCCTACGTCCCCACCGTCGCCGGCGCCGTCGCCGACGCCACCGAAAGGCTGATCAAGGCAGGGGCGGTGCACCTGGTGGTGCCCGGGAACCTGCCGATCGGCTGCTCGTCAGCGTACCTGACGCTGCACCCGAGCAGCAACAGGAGC ] [+] EMBL BI306183 [ ATCGTCGGCAAGTACCCCT AC GGCATG ACATACTTCCACCGCCCCACCGGCCGCTGCTCCGACGGCCGCCTCGTCGTCGACTTCCTCGCGCAAGCGTTCGGGCTGCCGCTGCTGCAGCCGTACCTGTCGCGCGGC GAGGACGTCACGCGG GGCGTCAAC T TCGCCGTCG GCGGCGCGACGGCCATGGATCCGCCGTTCTTCGAGGAGATCGGCGCGTCCGACAAGCTCTGGACCAACCTGTCGCTCAGCGTCCAGCTCGGCTGGTTCGAGCAGCTCAAGCCCTCACTCTGCAGCTCACCCAAAGATTGCAAGGAGTTCTTCAGCAAGTCACTCTTCCTCGTCGGGGAGATTGGGGGAAACGACTACAACTACGCCTTCTTCAAGGGCAAGAGCTTGGACGACGCCAAATCCTACGTCCCCACCGTCGCCGGCGCCGTCGCCGACGCCACCGAAAGGCTGA ] [+] EMBL AK061118 [ ATCGTCGGCAAGTACCCCT AC GGCATG ACATACTTCCACCGCCCCACCGGCCGCTGCTCCGACGGCCGCCTCGTCGTCGACTTCCTCGCGCAAGCGTTCGGGCTGCCGCTGCTGCAGCCGTACCTGTCGCGCGGC GAGGACGTCACGCGG GGCGTCAAC T TCGCCGTCG GCGGCGCGACGGCCATGGATCCGCCGTTCTTCGAGGAGATCGGCGCGTCCGACAAGCTCTGGACCAACCTGTCGCTCAGCGTCCAGCTCGGCTGGTTCGAGCAGCTCAAGCCCTCACTCTGCAGCTCACCCAAAGATTGCAAGGAGTTCTTCAGCAAGTCACTCTTCCTCGTCGGGGAGATTGGGGGAAACGACTACAACTACGCCTTCTTCAAGGGCAAGAGCTTGGACGACGCCAAATCCTACGTCCCCACCGTCGCCGGCGCCGTCGCCGACGCCACCGAAAGGCTGATCAAGGCAGGGGCGGTGCACCTGGTGGTGCCCGGGAACCTGCCGATCGGCTGCTCGTCAGCGTACCTGACGCTGCACCCGAGCAGCAACAGGAGCGACTACGACTCCACCGGCTGCCTCAAGACGTACAACGACTTCGCCCAGCACCACAACGCCGTGCTCCAGGACAAGCTCCGGCTGCTTCGCCGGAGCTACCCGGAGGCCAGGATCATGTACGCCGACTACTACGGCGCCGCCATGTCCTTCGCCCAGAACCCCAAGCA GTTCGGG TTCAGGCACGGGGCGC TGAGGACGT GCTGCGGC GGCGGAGGGCCG TACAACTTCAA CCCGAAGGCGAGCTGCGGCGTGCGGGGC TCCAGCGTGTGCACGGA CCCGTCGGCGTACGCCAACTGGGACGGCGTCCACCTGACGGAGGCCGGCTACCACGCCATCGCCAACAGCATCCTCAATGGCCCTTACACCAGCCCAAGGCTGCTCTGACCATCCCCCGTTCTCTCGACCTGGTGTTAGCTGCTGCTGCTGCTGCTGCACTCTGCAATGTAAACTGATCTGTAATGTAGTGATATGAGCTAGTGGTGGTTTTGAGTTTTGACAGTGTGTGGGCTTTGGCTACTTGAGTCTCCAGGCACAGTACAGTATGTCTGTCGAGTGTCATCAGCTTTGGGCGTGACTGTGTCCGTGCTACTTTTGACTTTGCAAGTACTGAATTATAGTACTCAGCACAACTGCACAAACCTTTCTTTCATGTGTTACGTCTGGATTTCACGAGACGAGTTGAAATCAGGCGGTATATATATATACGTCTGGATTTCAGAACAATTAGTTTCAGAAACATACGGCGTGGCATACACCAGTCAAA] [+] EMBL AK119598 [ ATCGTCGGCAAGTACCCCT AC GGCATG ACATACTTCCACCGCCCCACCGGCCGCTGCTCCGACGGCCGCCTCGTCGTCGACTTCCTCGCGCAAGCGTTCGGGCTGCCGCTGCTGCAGCCGTACCTGTCGCGCGGC GAGGACGTCACGCGG GGCGTCAAC T TCGCCGTCG GCGGCGCGACGGCCATGGATCCGCCGTTCTTCGAGGAGATCGGCGCGTCCGACAAGCTCTGGACCAACCTGTCGCTCAGCGTCCAGCTCGGCTGGTTCGAGCAGCTCAAGCCCTCACTCTGCAGCTCACCCAAAGATTGCAAGGAGTTCTTCAGCAAGTCACTCTTCCTCGTCGGGGAGATTGGGGGAAACGACTACAACTACGCCTTCTTCAAGGGCAAGAGCTTGGACGACGCCAAATCCTACGTCCCCACCGTCGCCGGCGCCGTCGCCGACGCCACCGAAAGGCTGATCAAGGCAGGGGCGGTGCACCTGGTGGTGCCCGGGAACCTGCCGATCGGCTGCTCGTCAGCGTACCTGACGCTGCACCCGAGCAGCAACAGGAGCGACTACGACTCCACCGGCTGCCTCAAGACGTACAACGACTTCGCCCAGCACCACAACGCCGTGCTCCAGGACAAGCTCCGGCTGCTTCGCCGGAGCTACCCGGAGGCCAGGATCATGTACGCCGACTACTACGGCGCCGCCATGTCCTTCGCCCAGAACCCCAAGCA GTTCGGG TTCAGGCACGGGGCGC TGAGGACGT GCTGCGGC GGCGGAGGGCCG TACAACTTCAA CCCGAAGGCGAGCTGCGGCGTGCAGGGC TCCAGCGTGTGCACGGA CCCGTCGGCGTACGCCAACTGGGACGGCGTCCACCTGACGGAGGCCGGCTACCACGCCATCGCCAACAGCATCCTCAATGGCCCTTACACCAGCCCAAGGCTGCTCTGACCATCCCCCGTTCTCTCGACCTGGTGTTAGCTGCTGCTGCTGCTGCTGCACTCTGCAATGTAAACTGATCTGTAATGTAGTGATATGAGCTAGTGGTGGTTTTGAGTTTTGACAGTGTGTGGGCTTTGGCTACTTGAGTCTCCAGGCACAGTACAGTATGTCTGTCGAGTGTCATCAGCTTTGGGCGTGACTGTGTCCGTGCTACTTTTGACTTTGCAAGTACTGAATTATAGTACTCAGCACAACTGCACAAACCTTTCTTTCATGTGTTACGTCTGGATTTCACGAGACGAGTTGAAATCAGGCGG TATATATATACGTCTGG ] [+] EMBL AU030833 [ ctCAGAACCCCAAGCANGTTCGGGTTTCAGGCACGGGGCGCTTGAGGACGTGGCTGCGGCTGNCGGAGGGCCGTTACAACTTCAACCCCGAAGGCGAGNTGCGGCGTGCGGGGCTTCCAGCGTGTGCACGGACCCCGTCGGCGTACGCCAACTGGGACGGCGTCCACCTGACGGAGGCCGGCTACCACGCCATCGCCAACAGCATCCTCAATGGCCCTTACACCAGCCCAAGGCTGCTCTGACCATCCCCCGTTCTCTCGACCTGGTGTTAGCTGCTGCTGCTGCTGCTGCACTCTGCAATGTAAACTGATCTGTAATGTAGTGATATGAGCTAGTGGTGGTTTTGAGTTTTGACAGTGTGTGGGCTTTGGCTACTTGAGTCTCCAGGCACAGTACAGTATGTCTGTCGAGTGTCATCAGCTTTGGGCGTGACTGTGTCCGTGCTACTTTTGACTTTGCAAGTACTGAATTATAGTACTCAGCACANCTGCACAAAaaaa ] consensusID : consensus_14084#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 728 fasta sequence [CGCCGGCGCGGTCGCCGACGCCACCGAAAGGGTGATCAAGGCAGGGGCGGTGCACCTGGTGGTGCCCGGGAACCTGCCGATCGGCTGCTCGTCAGCGTACCTGACGCTGCACCCGAGCAGCAACAGGAGCGACTACGACTCCACCGGCTGCCTCAAGACGTACAACGACTTCGCCCAGCACCACAACGCCGTGCTCCAGGACAAGCTCCGGCTGCTTCGCCGGAGCTACCCGGAGGCCAGGATCATGTACGCCGACTACTACGGCGCCGCCATGTCCTTCGCCCAGAACCCCAAGCAGTTCGGGTTCAGGCACGGGGCGCTGAGGACGTGCTGCGGCGGCGGAGGGCCGTACAACTTCAACCCGAAGGCGAGCTGCGGCGTGCGGGGCTCCAGCGTGTGCACGGACCCGTCGGCGTACGCCAACTGGGACGGCGTCCACCTGACGGAGGCCGGCTACCACGCCATCGCCAACAGCATCCTCAATGGCCCTTACACCAGCCCAAGGCTGCTCTGACCATCCCCCGTTCTCTCGACCTGGTGTTAGCTGCTGCTGCTGCTGCTGCACTCTGCAATGTAAACTGATCTGTAATGTAGTGATATGAGCTAGTGGTGGTTTTGAGTTTTGACAGTGTGTGGGCTTTGGCTACTTGAGTCTCCAGGCACAGTACAGTATGTCTGTCGAGAGGCATCAGCTTTGGGCGTGACTGTGTCCGTGCTAAAAAAAAAGA] [-] EMBL CB644927 [CGCCGGCGCGGTCGCCGACGCCACCGAAAGGGTGATCAAGGCAGGGGCGGTGCACCTGGTGGTGCCCGGGAACCTGCCGATCGGCTGCTCGTCAGCGTACCTGACGCTGCACCCGAGCAGCAACAGGAGCGACTACGACTCCACCGGCTGCCTCAAGACGTACAACGACTTCGCCCAGCACCACAACGCCGTGCTCCAGGACAAGCTCCGGCTGCTTCGCCGGAGCTACCCGGAGGCCAGGATCATGTACGCCGACTACTACGGCGCCGCCATGTCCTTCGCCCAGAACCCCAAGCAGTTCGGGTTCAGGCACGGGGCGCTGAGGACGTGCTGCGGCGGCGGAGGGCCGTACAACTTCAACCCGAAGGCGAGCTGCGGCGTGCGGGGCTCCAGCGTGTGCACGGACCCGTCGGCGTACGCCAACTGGGACGGCGTCCACCTGACGGAGGCCGGCTACCACGCCATCGCCAACAGCATCCTCAATGGCCCTTACACCAGCCCAAGGCTGCTCTGACCATCCCCCGTTCTCTCGACCTGGTGTTAGCTGCTGCTGCTGCTGCTGCACTCTGCAATGTAAACTGATCTGTAATGTAGTGATATGAGCTAGTGGTGGTTTTGAGTTTTGACAGTGTGTGGGCTTTGGCTACTTGAGTCTCCAGGCACAGTACAGTATGTCTGTCGAGAGGCATCAGCTTTGGGCGTGACTGTGTCCGTGCTAAAAAAAAAGA] consensusID : consensus_14084#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 450 fasta sequence [GCGGAGGGCCGTACAACTTCAACCCGAAGGCGANCTGCGGCGTGCGGGGCTCCCAGCGTNTGCACGGACCCNTACGGCGTACGCCAACTGGGACGGCGTCCCACCTGACGGAGGCCGGCTACCACGCCATCGCCAACAGCATCCTCAATGGCCCTTACACCAGCCCAAGGCTGCTCTG-ACCATCCCCCGTTCTCTCGACCTGGTGTTAGCTGCTGCT-GCTGCTGCTGCACTCTGCAA-TGTAAACTGATCTGTAATGTAGTGATATGA-GCTA-GTGGTGGTTTTGAGTTTT-GACAGTGT-GTGGGCTTTGGCTACTTGAGTCTCCAGGCACAGTACAGTATGTCT-GTCGAGTGTCATCAGCTTTGGGCGTGACTGTGTCCGTGCTACTTTTGACTTTGCAAGTACTGAATTATNGTNCTCA--AAAA----AAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU075812 [GCGGAGGGCCGTACAACTTCAACCCGAAGGCGANCTGCGGCGTGCGGGGCTCCCAGCGTNTGCACGGACCCNTACGGCGTACGCCAACTGGGACGGCGTCCCACCTGACGGAGGCCGGCTACCACGCCATCGCCAACAGCATCCTCAATGGCCCTTACACCAGCCCAAGGCTGCTCTG ACCATCCCCCGTTCTCTCGACCTGGTGTTAGCTGCTGCT GCTGCTGCTGCACTCTGCAA TGTAAACTGATCTGTAATGTAGTGATATGA GCTA GTGGTGGTTTTGAGTTTT GACAGTGT GTGGGCTTTGGCTACTTGAGTCTCCAGGCACAGTACAGTATGTCT GTCGAGTGTCATCAGCTTTGGGCGTGACTGTGTCCGTGCTACTTTTGACTTTGCAAGTACTGAATTATNGTNCTCA AAAA AAAAAAAAAAAA ] [+] EMBL AU077892 [ GCTCTGNACCATCCCCCGTTCTCTCGACCTGGTGTTAGCTGCTGCTNGCTGCTGCTGCACTCTGCAACTGTAAACTGATCTGTAATGTAGTGATATGACGCTACGTGGTGGTTTTGAGTTTTCGACAGTGTNGTGGGCTTTGGCTACTTGAGTCTCCAGGCACAGTACAGTATGTCTCGTCGAGTGTCATCAGCTTTGGGCGTGACTGTGTCCGTGCTACTTTTGACTTTGCAAGTACTGAATTATAGTACTCAGCACAACTGCACAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_14084#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 394 fasta sequence [ACCGGAGTCGGGACGAACGCTCGTCGCGCGCTGCGCGCACGCACCTACCCCAGATTTGCCCTCGGCATTTACGCCCTCACCTACAATCTCAAGCGAGCCCGATTAATGCCCTCTTTATAGTCCCACCATTGCCGAGCTCATCCCAATGCAGAAACCATCCAGCGTGTAGTGTGTAGC-GTGTAGTGTGTCGTCACGATGTCGCGCGCCATGGCGGCCTCCAGGCGGGTCTCGGTGTTCGTCGCCGCGTTGGTCTGCTGCTCACTCGTGCGGCTCTCCCGGTGCGGCGGCGGCGGCGGCGGGCAGAGGGCGCAGAACTACACCTCGATGTTCAGCTTCGGCGACTCGCTGACGGACACCGGCAACCTCGTCGTGTCCAGCCCGATCTCCTTCAGCA] [+] EMBL AU172992 [ACCGGAGTCGGGACGAACGCTCGTCGCGCGCTGCGCGCACGCACCTACCCCAGATTTGCCCTCGGCATTTACGCCCTCACCTACAATCTCAAGCGAGCCCGATTAATGCCCTCTTTATAGTCCCACCATTGCCGAGCTCATCCCAATGCAGAAACCATCCAGCGTGTAGTGTGTAGCAGTGTAGTGTGTCGTCACGATGTCGCGCGCCATGGCGGCCTCCAGGCGGGTCTCGGTGTTCGTCGCCGCGTTGGTCTGCTGCTCACTCGTGCGGCTCTCCCGGTGCGGCGGCGGCGGCGGCGGGCAGAGGGCGCAGAACTACACCTCGATGTTCAGCTTCGGCGACTCGCTGACGGACAC ] [+] EMBL OSS2765A [ TGTAGTGTGTAGC GTGTAGTGTGTCGTCACGATGTCGCGCGCCATGGCGGCCTCCAGGCGGGTCTCGGTGTTCGTNGCCGCGTTGGTCTGCTGCTCACTCGTGCGGCTCTCCCGGTGCGGNGGCGGCGGCGGCGGGCAGAGGGCGCAGAACTACACCTCGATGTTCAGCTTCGGCGACTCGCTGACGGACACCGGCAACCTCGTCGTGTCCAGCCCGATCTCCTTCAGCA] [+] EMBL AU075811 [ GTAGC GTGTAGTGTGTCGTCACGATGTCGCGCGCCATGGCGGCCTCCAGGCGGGTCTCGGTGTTCGTCGCCGCGTTGGTCTGCTGCTCACTCGTGCGGCTCTCCCGGTGCGGCGGCGGCGGCGGCGGGCAGAGGGCGCAGAACTACACCTCGATGTTCAGCTTCGGCGACTCGCTGACGGACAC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14084#1 ------------------------------------------------------------ consensus_14084#2 ------------------------------------------------------------ consensus_14084#0 GTAGTGTGTAGCGTGTAGTGTGTGTCACGATGTCGCGCGCCATGGCGGCCTCCAGGCGGG 60 consensus_14084#3 ------------------------------------------------------------ consensus_14084#1 ------------------------------------------------------------ consensus_14084#2 ------------------------------------------------------------ consensus_14084#0 TCTCGGTGTTCGTCGCCGCGTTGGTCTTGCTGCTCCCTCGTGCGGCTCTCCCGTGTGCGG 120 consensus_14084#3 ------------------------------------------------------------ consensus_14084#1 ------------------------------------------------------------ consensus_14084#2 ------------------------------------------------------------ consensus_14084#0 CGGCTGGCGGCGGCGGGCCGCGGGCGCCGCACTCCACCTCGCATGTTCCGCTTCGTGCGC 180 consensus_14084#3 ------------------------------------------------------------ consensus_14084#1 ------------------------------------------------------------ consensus_14084#2 ------------------------------------------------------------ consensus_14084#0 CTCGCTGCACGGCCACCGGCCCCCTCGTCTGTGTCCCGCCCGCTCTCCTTCAGCATCGTC 240 consensus_14084#3 ------------------------------------------------------------ consensus_14084#1 ------------------------------------------------------------ consensus_14084#2 ------------------------------------------------------------ consensus_14084#0 GGCAAGTACCCCTACGGCATGACATACTTCCACCGCCCCACCGGCCGCTGCTCCGACGGC 300 consensus_14084#3 ------------------------------------------------------------ consensus_14084#1 ------------------------------------------------------------ consensus_14084#2 ------------------------------------------------------------ consensus_14084#0 CGCCTCGTCGTCGACTTCCTCGCGCAAGCGTTCGGGCTGCCGCTGCTGCAGCCGTACCTG 360 consensus_14084#3 ------------------------------------------------------------ consensus_14084#1 ------------------------------------------------------------ consensus_14084#2 ------------------------------------------------------------ consensus_14084#0 TCGCGCGGCGAGGACGTCACGCGGGGCGTCAACTTCGCCGTCGGCGGCGCGACGGCCATG 420 consensus_14084#3 ------------------------------------------------------------ consensus_14084#1 ------------------------------------------------------------ consensus_14084#2 ------------------------------------------------------------ consensus_14084#0 GATCCGCCGTTCTTCGAGGAGATCGGCGCGTCCGACAAGCTCTGGACCAACCTGTCGCTC 480 consensus_14084#3 ------------------------------------------------------------ consensus_14084#1 ------------------------------------------------------------ consensus_14084#2 ------------------------------------------------------------ consensus_14084#0 AGCGTCCAGCTCGGCTGGTTCGAGCAGCTCAAGCCCTCACTCTGCAGCTCACCCAAAGAT 540 consensus_14084#3 ------------------------------------------------------------ consensus_14084#1 ------------------------------------------------------------ consensus_14084#2 ------------------------------------------------------------ consensus_14084#0 TGCAAGGAGTTCTTCAGCAAGTCACTCTTCCTCGTCGGGGAGATTGGGGGAAACGACTAC 600 consensus_14084#3 ------------------------------------------------------------ consensus_14084#1 -----------------------------------------------------------C 1 consensus_14084#2 ------------------------------------------------------------ consensus_14084#0 AACTACGCCTTCTTCAAGGGCAAGAGCTTGGACGACGCCAAATCCTACGTCCCCACCGTC 660 consensus_14084#3 ------------------------------------------------------------ consensus_14084#1 GCCGGCGCGGTCGCCGACGCCACCGAAAGGGTGATCAAGGCAGGGGCGGTGCACCTGGTG 61 consensus_14084#2 ------------------------------------------------------------ consensus_14084#0 GCCGGCGCCGTCGCCGACGCCACCGAAAGGCTGATCAAGGCAGGGGCGGTGCACCTGGTG 720 consensus_14084#3 ------------------------------------------------------------ consensus_14084#1 GTGCCCGGGAACCTGCCGATCGGCTGCTCGTCAGCGTACCTGACGCTGCACCCGAGCAGC 121 consensus_14084#2 ------------------------------------------------------------ consensus_14084#0 GTGCCCGGGAACCTGCCGATCGGCTGCTCGTCAGCGTACCTGACGCTGCACCCGAGCAGC 780 consensus_14084#3 ------------------------------------------------------------ consensus_14084#1 AACAGGAGCGACTACGACTCCACCGGCTGCCTCAAGACGTACAACGACTTCGCCCAGCAC 181 consensus_14084#2 ------------------------------------------------------------ consensus_14084#0 AACAGGAGCGACTACGACTCCACCGGCTGCCTCAAGACGTACAACGACTTCGCCCAGCAC 840 consensus_14084#3 ------------------------------------------------------------ consensus_14084#1 CACAACGCCGTGCTCCAGGACAAGCTCCGGCTGCTTCGCCGGAGCTACCCGGAGGCCAGG 241 consensus_14084#2 ------------------------------------------------------------ consensus_14084#0 CACAACGCCGTGCTCCAGGACAAGCTCCGGCTGCTTCGCCGGAGCTACCCGGAGGCCAGG 900 consensus_14084#3 ------------------------------------------------------------ consensus_14084#1 ATCATGTACGCCGACTACTACGGCGCCGCCATGTCCTTCGCCCAGAACCCCAAGCAGTTC 301 consensus_14084#2 ------------------------------------------------------------ consensus_14084#0 ATCATGTACGCCGACTACTACGGCGCCGCCATGTCCTTCGCCCAGAACCCCAAGCAGTTC 960 consensus_14084#3 ------------------------------------------------------------ consensus_14084#1 GGGTTCAGGCACGGGGCGCTGAGGACGTGCTGCGGCGGCGGAGGGCCGTACAACTTCAAC 361 consensus_14084#2 -------------------------------------GCGGAGGGCCGTACAACTTCAAC 23 consensus_14084#0 GGGTTCAGGCACGGGGCGCTGAGGACGTGCTGCGGCGGCGGAGGGCCGTACAACTTCAAC 1020 consensus_14084#3 -------------------------------------ACCGGAGTCGGGACGA----ACG 19 * * * * * ** * * consensus_14084#1 CCGAAGGCGAGCTGCG-GCGTGCGGGGCTCC-AGCGTGTGCACGGACCCGT-CGGCGTAC 418 consensus_14084#2 CCGAAGGCGANCTGCG-GCGTGCGGGGCTCCCAGCGTNTGCACGGACCCNTACGGCGTAC 82 consensus_14084#0 CCGAAGGCGAGCTGCG-GCGTGCGGGGCTCC-AGCGTGTGCACGGACCCGT-CGGCGTAC 1077 consensus_14084#3 CTCGTCGCGCGCTGCGCGCACGCACCTACCCCAGATTTGCCCTCGGCATTTACGCCCTCA 79 * *** ***** ** ** ** ** * * * * * ** * * consensus_14084#1 GC--CAACTGGGACGGCGTCC-ACCTGACGGAGGCCGGCTA-CCACGCCATCGCCAACAG 474 consensus_14084#2 GC--CAACTGGGACGGCGTCCCACCTGACGGAGGCCGGCTA-CCACGCCATCGCCAACAG 139 consensus_14084#0 GC--CAACTGGGACGGCGTCC-ACCTGACGGAGGCCGGCTA-CCACGCCATCGCCAACAG 1133 consensus_14084#3 CCTACAATCTCAAGCGAGCCC-GATTAATGCCCTCTTTATAGTCCCACCATTGCCGAGCT 138 * *** * * * ** * * * * ** * * **** *** * consensus_14084#1 CATCCTCAATGGCCCTTACACCAGCCCAAGGCTGCTCTGACCATCCCCCGTTCTCTCGAC 534 consensus_14084#2 CATCCTCAATGGCCCTTACACCAGCCCAAGGCTGCTCTGACCATCCCCCGTTCTCTCGAC 199 consensus_14084#0 CATCCTCAATGGCCCTTACACCAGCCCAAGGCTGCTCTGACCATCCCCCGTTCTCTCGAC 1193 consensus_14084#3 CATCC-CAATG---CAGAAACCATCC--AGCGTGTAGTGTGTAGCGTGTAGTGTGTCGTC 192 ***** ***** * * **** ** ** ** ** * * * * *** * consensus_14084#1 CTGGTGTTAGCTGCTGCTGCTGCTGCTGCACTCTGCAATGTAAACTGATCTGTAATGTAG 594 consensus_14084#2 CTGGTGTTAGCTGCTGCTGCTGCTGCTGCACTCTGCAATGTAAACTGATCTGTAATGTAG 259 consensus_14084#0 CTGGTGTTAGCTGCTGCTGCTGCTGCTGCACTCTGCAATGTAAACTGATCTGTAATGTAG 1253 consensus_14084#3 ACGATGTCGCGCGCCATGGCGGCCTCCAGGCGGGTCTCGGTGTTCGTCGCCGCGTTGGTC 252 * *** ** ** ** * * * ** * * * ** consensus_14084#1 TGATATGAGCTAGTGGTGGTTTTGAGTTTTGACAGTGT-----GTGGGCTTTGGCTAC-- 647 consensus_14084#2 TGATATGAGCTAGTGGTGGTTTTGAGTTTTGACAGTGT-----GTGGGCTTTGGCTAC-- 312 consensus_14084#0 TGATATGAGCTAGTGGTGGTTTTGAGTTTTGACAGTGT-----GTGGGCTTTGGCTAC-- 1306 consensus_14084#3 TGCTGCTCACTCGTGCGGCTCTCCCGGTGCGGCGGCGGCGGCGGCGGGCAGAGGGCGCAG 312 ** * ** *** * * * * * * * * * * **** ** * consensus_14084#1 --TTGAGTCTCCAGGCACAGTACAGTATGTCTGTCGAGAGGCATCAGC--TTTGGGCGTG 703 consensus_14084#2 --TTGAGTCTCCAGGCACAGTACAGTATGTCTGTCGAGTGTCATCAGC--TTTGGGCGTG 368 consensus_14084#0 --TTGAGTCTCCAGGCACAGTACAGTATGTCTGTCGAGTGTCATCAGC--TTTGGGCGTG 1362 consensus_14084#3 AACTACACCTCGATGTTCAGCTTCGGCGACTCGCTGACGGACACCGGCAACCTCGTCGTG 372 * *** * * *** * * ** * ** * ** * * **** consensus_14084#1 ACTGTGTCCGTGCTAAAAAAAAAGA----------------------------------- 728 consensus_14084#2 ACTGTGTCCGTGCTACTTTTGACTTTGCAAGTACTGAATTATNGTNCTCAAAAAAAAAAA 428 consensus_14084#0 ACTGTGTCCGTGCTACTTTTGACTTTGCAAGTACTGAATTATAGTACTCAGCACAACTGC 1422 consensus_14084#3 TCCA-GCCCGATCTCCTTCAGCA------------------------------------- 394 * * *** ** consensus_14084#1 ------------------------------------------------------------ consensus_14084#2 AAAAAAAAAAAAAAAAAAAAAA-------------------------------------- 450 consensus_14084#0 ACAAACCTTTCTTTCATGTGTTACGTCTGGATTTCACGAGACGAGTTGAAATCAGGCGGT 1482 consensus_14084#3 ------------------------------------------------------------ consensus_14084#1 ------------------------------------------------------------ consensus_14084#2 ------------------------------------------------------------ consensus_14084#0 ATATATATATACGTCTGGATTTCAGAACAATTAGTTTCAGAAACATACGGCGTGGCATAC 1542 consensus_14084#3 ------------------------------------------------------------ consensus_14084#1 ---------- consensus_14084#2 ---------- consensus_14084#0 ACCAGTCAAA 1552 consensus_14084#3 ---------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||