These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14088#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 1585 fasta sequence [GAGCTTTTCCTCCCATCTTCCCCGCAGATCAAACGCCCCCCAAAACCCTAGGCCCCCCTTCTCCTCCGACGCCGGCTACAGTCTCCGACCCCTCCGGCGCAATCGCGGAATCGGAGGCGGCGGGCGGCGCCATGGACAACGCCCTCGCGAGCGCCGCGGCGATCGCCGACCAGCGCCAGAAGATCGAGCAGTACCGCCACATCCTCTCCTCCGTCCTCTCGTTTTCCCCGCCGGACATCTCGCAGGCGAAGCGCT-TCCTCGACCACATGGTTTCCGACGAGGTGCCGCTCGTGGTGTCGCGGCAGCTGCTGCAGACGTTCGCCCAGGAGCTTGGGAGGTTGGAGCCAGAGGCTCAGAAGGAGGTCGCGCACTACGCGCTCACGCAGATCCAGCCTCGTGTGGTCTCCTTCGAGGAGCAGGTGGTAGTGATTAGAGAGAAGCTTGCAGAACTGTATGAGTCTGAACAACAATGGTCAAAAGCTGCACAGATGCTTAGTGGGATTGACTTGGACTCAGGGATCAGGATGCTGGATGACACAAACAAATTATCCAAATGTGTCCAGATTGCACGACTTTATTTAGAGGATGATGATTCTGTTAATGCTGAAGCTTTTATTAACAAAGCTTCATTTTTGGTAACAAACAGTCACCAAGAACTTCTGAACTTACAGTACAAGGTATGCTACGCTAGAATTTTGGATCTGAAGAGAAGATTCTTGGAAGCTGCACTTCGATACTATGACATCTCTCAGATTGAACAACGCCAAATTGGTGACGAAGAGATCGATGAAAATGCTTTGGAGCAAGCTCTTAGTGCTGCTGTGACATGCACAATATTGGCTGGTGCTGGTCCGCAACGATCTCGTGTTCTTGCTACATTGTACAAGGATGAGAGATGCTCAAAGTT-GAAGAT-ATACCCAATACTGC-AGAAGG-TCTTTCTTG-AAAGGA-TTTTGAGGAAA-CCAGAAA-TTG-AAGCATTTGCA-GAGGAGCTGAGACC-GCATC-AAAAAGCTCTGTTACCAGATAAGTCTACT-GTGCTTGACCGGGCAATGATTGAGCATAACCTCCTTAGTGCCAGTAAACTTTACACTAATATCA-GCTTTGATGAGCTTGGAGCA-TTATTGGGCATTGACCCTAGGAAGGCTGAAAAGATAGCATCGCGAATGATTTATGAAGATAGGATGCGAGGTTCAATTGATCAGGTTGAAGCTGTGATACATTTTGAGGATGACACTGAAGAGCTGCAGCAGTGGGACCAACAGATTGCGGGACTGTGCCAAGCGCTGAACGACA-TTCTGGACAGCATGTCAAGCAAGGGAATGGCTATTCCTGTGTGAGCTCTTCAAGTTG-CTTCGATGGTACTCGTGAGAACTGTGGTCACGGCGTCAGGCCTCACGGACA-TTTTGTACAGATGTTCGCAG-CTGCGAGTACCAGTCATGTTTCGGAACGAATTTTGGCCACAATTAGTCGGTGATCGGTACATGTGAAGTTGTGAACTGCTGGATAGATTAAGGCAGTGGCGCCGTAATGGCATTATATCACAAACCAAAATTGATCGTGATAGCATTTTATGCCTTGTTTTAAAAAAAAG] [+] EMBL AK071413 [GAGCTTTTCCTCCCATCTTCCCCGCAGATCAAACGCCCCCCAAAACCCTAGGCCCCCCTTCTCCTCCGACGCCGGCTACAGTCTCCGACCCCTCCGGCGCAATCGCGGAATCGGAGGCGGCGGGCGGCGCCATGGACAACGCCCTCGCGAGCGCCGCGGCGATCGCCGACCAGCGCCAGAAGATCGAGCAGTACCGCCACATCCTCTCCTCCGTCCTCTCGTTTTCCCCGCCGGACATCTCGCAGGCGAAGCGCT TCCTCGACCACATGGTTTCCGACGAGGTGCCGCTCGTGGTGTCGCGGCAGCTGCTGCAGACGTTCGCCCAGGAGCTTGGGAGGTTGGAGCCAGAGGCTCAGAAGGAGGTCGCGCACTACGCGCTCACGCAGATCCAGCCTCGTGTGGTCTCCTTCGAGGAGCAGGTGGTAGTGATTAGAGAGAAGCTTGCAGAACTGTATGAGTCTGAACAACAATGGTCAAAAGCTGCACAGATGCTTAGTGGGATTGACTTGGACTCAGGGATCAGGATGCTGGATGACACAAACAAATTATCCAAATGTGTCCAGATTGCACGACTTTATTTAGAGGATGATGATTCTGTTAATGCTGAAGCTTTTATTAACAAAGCTTCATTTTTGGTAACAAACAGTCACCAAGAACTTCTGAACTTACAGTACAAGGTATGCTACGCTAGAATTTTGGATCTGAAGAGAAGATTCTTGGAAGCTGCACTTCGATACTATGACATCTCTCAGATTGAACAACGCCAAATTGGTGACGAAGAGATCGATGAAAATGCTTTGGAGCAAGCTCTTAGTGCTGCTGTGACATGCACAATATTGGCTGGTGCTGGTCCGCAACGATCTCGTGTTCTTGCTACATTGTACAAGGATGAGAGATGCTCAAAGTT GAAGAT ATACCCAATACTGC AGAAGG TCTTTCTTG AAAGGA TTTTGAGGAAA CCAGAAA TTG AAGCATTTGCA GAGGAGCTGAGACC GCATC AAAAAGCTCTGTTACCAGATAAGTCTACT GTGCTTGACCGGGCAATGATTGAGCATAACCTCCTTAGTGCCAGTAAACTTTACACTAATATCA GCTTTGATGAGCTTGGAGCA TTATTGGGCATTGACCCTAGGAAGGCTGAGAAGATAGCATCGCGAATGATTTATGAAGATAGGATGCGAGGTTCAATTGATCAGGTTGAAGCTGTGATACATTTTGAGGATGACACTGAAGAGCTGCAGCAGTGGGACCAACAGATTGCGGGACTGTGCCAAGCGCTGAACGACA TTCTGGACAGCATGTCAAGCAAGGGAATGGCTATTCCTGTGTGAGCTCTTCAAGTTG CTTCGATGGTACTCGTGAGAACTGTGGTCACGGCGTCAGGCCTCACGGACA TTTTGTACAGATGTTCGCAG CTGCGAGTACCAGTCATGTTTCGGAACGAATTTTGGCCACAATTAGTCGGTGATCGGTACATGTGAAGTTGTGAACTGCTGGATAGATTAAGGCAGTGGCGCCGTAATGGCATTATATCACAAACCAAAATTGA ] [+] EMBL CB681616 [ CCATCTTCCCCGCAGATCAAACGCCCCCCAAAACCCTAGGCCCCCCTTCTCCTCCGACGCCGGCTACAGTCTCCGACCCCTCCGGCGCAATCGCGGAATCGGAGGCGGCGGGCGGCGCCATGGACAACGCCCTCGCGAGCGCCGCGGCGATCGCCGACCAGCGCCAGAAGATCGAGCAGTACCGCCACATCCTCTCCTCCGTCCTCTCGTTTTCCCCGCCGGACATCTCGCAGGCGAAGCGCT TCCTCGACCACATGGTTTCCGACGAGGTGCCGCTCGTGGTGTCGCGGCAGCTGCTGCAGACGTTCGCCCAGGAGCTTGGGAGGTTGGAGCCAGAGGCTCAGAAGGAGGTCGCGCACTACGCGCTCACGCAGATCCAGCCTCGTGTGGTCTCCTTCGAGGAGCAGGTGGTAGTGATTAGAGAGAAGCTTGCAGAACTGTATGAGTCTGAACAACAATGGTCAAAAGCTGCACAGATGCTTAGTGGGATTGACTTGGACTCAGGGATCAGGATGCTGGATGACACAAACAAATTATCCAAATGTGTCCAGATTGCACGACTTTATTTAGAGGATGATGATTCTGTTAATGCTGAAGCTTTTATTAACAAAGCTTCATTTTTGGTAACAAACAGTCACCAAGAACTTCTGAACTTACAGTACAAGGTATGCTACGCTAGAATTTTGGATCTGAAGAGAAGATTCTTGGAAGCTGCACTTCGATACTATGACATCTCTCAGATTGAACAACGCCAAATTGGTGACGAAGAGATCGATNGAAATGCTTTGG ] [+] EMBL C28660 [ CCAAAACCCTAGGCCCCCCTTCTCCTCCGACGCCGGCTACAGTCTNCGACCCCTCCGGCGCAATCGCGGAATCGGAGGCGGCGGGCGGCG CATGGACAACGCNCTCGCNAGCNCCGCGTCGATCG CGACCAGCGCCAGAAGATCGAGCAGTACCGCCACATCCTCTCCTCCGTNCTCTCGTTTTCCCCGCCGGACATCTCGCAGGCGAAG GCTNTCCTCGACCACATGGTTTCCGACGAGGTGCCGCTCGTGGTGTCGCGGCA NTGCTGCAGACGTTCGCCCAGGAGCTTGGGAGGTTGGAGCCAGAGGtnag ] [+] EMBL AK104905 [ CCCTAGGCCCCCCTTCTCCTCCGACGCCGGCTACAGTCTCCGACCCCTCCGGCGCAATCGCGGAATCGGAGGCGGCGGGCGGCGCCATGGACAACGCCCTCGCGAGCGCCGCGGCGATCGCCGACCAGCGCCAGAAGATCGAGCAGTACCGCCACATCCTCTCCTCCGTCCTCTCGTTTTCCCCGCCGGACATCTCGCAGGCGAAGCGCT TCCTCGACCACATGGTTTCCGACGAGGTGCCGCTCGTGGTGTCGCGGCAGCTGCTGCAGACGTTCGCCCAGGAGCTTGGGAGGTTGGAGCCAGAGGCTCAGAAGGAGGTCGCGCACTACGCGCTCACGCAGATCCAGCCTCGTGTGGTCTCCTTCGAGGAGCAGGTGGTAGTGATTAGAGAGAAGCTTGCAGAACTGTATGAGTCTGAACAACAATGGTCAAAAGCTGCACAGATGCTTAGTGGGATTGACTTGGACTCAGGGATCAGGATGCTGGATGACACAAACAAATTATCCAAATGTGTCCAGATTGCACGACTTTATTTAGAAGATGATGATTCTGTTAATGCTGAAGCTTTTATTAACAGAGCTTCATTTTTGGTAACAAACAGTCACCAAGAACTTCTGAACTTACAGTACAAGGTATGCTACGCTAGAATTTTGGATCTGAAGAGAAGATTCTTGGAAGCTGCACTTCGATACTATGACATCTCTCAGATTGAACAACGCCAAATTGGTGACGAAGAGATCGATGAAAATGCTTTGGAGCAAGCTCTTAGTGCTGCTGTGACATGCACAATATTGGCTGGTGCTGGTCCGCAACGATCTCGTGTTCTTGCTACATTGTACAAGGATGAGAGATGCTCAAAGTT GAAGAT ATACCCAATACTGC AGAAGG TCTTTCTTG AAAGGA TTTTGAGGAAA CCAGAAA TTG AAGCATTTGCA GAGGAGCTGAGACC GCATC AAAAAGCTCTGTTACCAGATAAGTCTACT GTGCTTGACCGGGCAATGATTGAGCATAACCTCCTTAGTGCCAGTAAACTTTACACTAATATCA GCTTTGATGAGCTTGGAGCA TTATTGGGCATTGACCCTAGGAAGGCTGAAAAGATAGCATCGCGAATGATTTATGAAGATAGGATGCGAGGTTCAATTGATCAGGTTGAAGCTGTGATACATTTTGAGGATGACACTGAAGAGCTGCAGCAGTGGGACCAACAGATTGC GGACTGTGCCAAGCGCTGAACGACA TTCTGGACAGCATGTCAAGCAAGGGAATGGCTATTCCTGTGTGAGCTCTTCAAGTTG CTTCGATGGTACTCGTGAGAACTGTGGTCACGGCGTCAGGCCTCACGGACA TTTTGTACAGATGTTCGCAG CTGCGAGTACCAGTCATGCTTCGGAACGAATTTTGGCCACAATTAGTCGGTGATCGGTACATGTGAAGTTGTGAACTGCTGGATAGATTAAGGCAGTGGCGCCGTAATGGCATTATATCACAAACCAAAAT ] [+] EMBL CB657541 [ CCCCCTTCTCCTCCGACGCCGGCTACAGTCTCCGACCCCTCCGGCGCAATCGCGGAATCGGAGGCGGCGGGCGGCGCCATGGACAACGCCCTCGCGAGCGCCGCGGCGATCGCCGACCAGCGCCAGAAGATCGAGCAGTACCGCCACATCCTCTCCTCCGTCCTCTCGTTTTCCCCGCCGGACATCTCGCAGGCGAAGCGCT TCCTCGACCACATGGTTTCCGACGAGGTGCCGCTCGTGGTGTCGCGGCAGCTGCTGCAGACGTTCGCCCAGGAGCTTGGGAGGTTGGAGCCAGAGGCTCAGAAGGAGGTCGCGCACTACGCGCTCACGCAGATCCAGCCTCGTGTGGTCTCCTTCGAGGAGCAGGTGGTAGTGATTAGAGAGAAGCTTGCAGAACTGTATGAGTCTGAACAACAATGGTCAAAAGCTGCACAGATGCTTAGTGGGATTGACTTGGACTCAGGGATCAGGATGCTGGATGACACAAACAAATTATCCAAATGTGTCCAGATTGCACGACTTTATTTAGAGGATGATGATTCTGTTAATGCTGAAGCTTTTATTAACAAAGCTTCATTTTTGGTAACAAACAGTCACCAAGAACTTCTGAACTTACAGTACAAGGTATGCTACGCTAGAATTTTGGATCTGAAGAGAAGATTCTTGGAAGCTGCACTTCGATACTATGACATCTCTCAGATTGAACAACGCCAAATTGGTGACGAAGAGATCGATGAAAATGCTTTGGAGNCAGCTCTTAGTGCTGCTGTGACATGCACAATATTGGCTGGTGCTGGTCCGCAACGATCTCGTG ] [+] EMBL CB668759 [ CGGCTCCTGTCTCCGACCCCTCCGGCGCAATCGCGGAATCGGAGGCGGCGGGCGGCGCCATGGACAACGCCCTCGCGAGCGCCGCGGCGATCGCCGACCAGCGCCAGAAGATCGAGCAGTACCGCCACATCCTCTCCTCCGTCCTCTCGTTTTCCCCGCCGGACATCTCGCAGGCGAAGCGCT TCCTCGACCACATGGTTTCCGACGAGGTGCCGCTCGTGGTGTCGCGGCAGCTGCTGCAGACGTTCGCCCAGGAGCTTGGGAGGTTGGAGCCAGAGGCTCAGAAGGAGGTCGCGCACTACGCGCTCACGCAGATCCAGCCTCGTGTGGTCTCCTTCGAGGAGCAGGTGGTAGTGATTAGAGAGAAGCTTGCAGAACTGTATGAGTCTGAACAACAATGGTCAAAAGCTGCACAGATGCTTAGTGGGATTGACTTGGACTCAGGGATCAGGATGCTGGATGACACAAACAAATTATCCAAATGTGTCCAGATTGCACGACTTTATTTAGAGGATGATGATTCTGTTAATGCTGAAGCTTTTATTAACAAAGCTTCATTTTTGGTAACAAACAGTCACCAAGAACTTCTGAACTTACAGTACAAGGTATGCTACGCTAGAATTTTGGATCTGAAGAGAAGATTCTTGGAAGCTGCACTTCGATACTATGACATCTCTCAGATTGAACAACGCCAAATTGGTGACGAAGAGATCGATGANAATGCTTTGGAGCAAGCTCTTAGTGCTGCTGTGACATGCACAATATTGGCTGGTGCTGGTCCGCAACGATCTCGTGTTCTTGCTACATTG ] [+] EMBL CB683451 [ AGCACTACCGCCACATCCTCTCCTCCGTCCTCTCGTTTTCCCCGCCGGACATCTCGCAGGCGAAGCGCT TCCTCGACCACATGGTTTCCGACGAGGTGCCGCTCGTGGTGTCGCGGCAGCTGCTGCAGACGTTCGCCCAGGAGCTTGGGAGGTTGGAGCCAGAGGCTCAGAAGGAGGTCGCGCACTACGCGCTCACGCAGATCCAGCCTCGTGTGGTCTCCTTCGAGGAGCAGGTGGTAGTGATTAGAGAGAAGCTTGCAGAACTGTATGAGTCTGAACAACAATGGTCAAAAGCTGCACAGATGCTTAGTGGGATTGACTTGGACTCAGGGATCAGGATGCTGGATGACACAAACAAATTATCCAAATGTGTCCAGATTGCACGACTTTATTTAGAGGATGATGATTCTGTTAATGCTGAAGCTTTTATTAACAAAGCTTCATTTTTGGTAACAAACAGTCACCAAGAACTTCTGAACTTACAGTACAAGGTATGCTACGCTAGAATTTTGGATCTGAAGAGAAGATTCTTGGAAGCTGCACTTCGATACTATGACATCTCTCAGATTGAACAACGCCAAATTGGTGACGAAGAGATCGATGAAAATGCTTTGGAGCAAGCTCTTAGTGCTGCTGTGACATGCACAATATTGGCTGGTGCTGGTCCGCAACGATCTCGTGTTCTTGCTACATTGTACAAGGATGAGAGATGCTCAAAGTT GAAGAT ATACCCAATACTGC AGAAGG TCTTTCTTG AAAGGA TTTTGAGGAAA CCAGAAA TTG ] [-] EMBL CB657542 [ ACGCCAAATTGGTGACGAAGAGATCGATGAAAATGCTTTGGAGCAAGCTCTTAGTGCTGCTGTGACATGCACAATATTGGCTGGTGCTGGTCCGCAACGATCTCGTGTTCTTGCTACATTGTACAAGGATGAGAGATGCTCAAAGTT GAAGAT ATACCCAATACTGC AGAAGG TCTTTCTTG AAAGGA TTTTGAGGAAA CCAGAAA TTG AAGCATTTGCA GAGGAGCTGAGACC GCATC AAAAAGCTCTGTTACCAGATAAGTCTACT GTGCTTGACCGGGCAATGATTGAGCATAACCTCCTTAGTGCCAGTAAACTTTACACTAATATCA GCTTTGATGAGCTTGGAGCA TTATTGGGCATTGACCCTAGGAAGGCTGAAAAGATAGCATCGCGAATGATTTATGAAGATAGGATGCGAGGTTCAATTGATCAGGTTGAAGCTGTGATACATTTTGAGGATGACACTGAAGAGCTGCAGCAGTGGGACCAACAGATTGCGGGACTGTGCCAAGCGCTGAACGACA TTCTGGACAGCATGTCAAGCAAGGGAATGGCTATTCCTGTGTGAGCTCTTCAAGTTG CTTCGATGGTACTCGTGAGAACTGTGGTCACGGCGTCAGGCCTCACGGACA TTTTGTACAGATGTTCGCAG CTGCGAGTACCAGTCATGTTTCGGAACGAATTTTGGCCACAATTAGTCGGTGATCGGTACATGTGAAGTTGTGAACTGCTGGATAGATTAAGGCAGTGGCGCCGTAATGGCATTATATCACAAACCAAAATTGATCGTGAT ] [-] EMBL CB668760 [ AAAATGCTTTGGAGCAAGCTCTTAGTGCTGCTGTGACATGCACAATATTGGCTGGTGCTGGTCCGCAACGATCTCGTGTTCTTGCTACATTGTACAAGGATGAGAGATGCTCAAAGTT GAAGAT ATACCCAATACTGC AGAAGG TCTTTCTTG AAAGGA TTTTGAGGAAA CCAGAAA TTG AAGCATTTGCA GAGGAGCTGAGACC GCATC AAAAAGCTCTGTTACCAGATAAGTCTACT GTGCTTGACCGGGCAATGATTGAGCATAACCTCCTTAGTGCCAGTAAACTTTACACTAATATCA GCTTTGATGAGCTTGGAGCA TTATTGGGCATTGACCCTAGGAAGGCTGAAAAGATAGCATCGCGAATGATTTATGAAGATAGGATGCGAGGTTCAATTGATCAGGTTGAAGCTGTGATACATTTTGAGGATGACACTGAAGAGCTGCAGCAGTGGGACCAACAGATTGCGGGACTGTGCCAAGCGCTGAACGACA TTCTGGACAGCATGTCAAGCAAGGGAATGGCTATTCCTGTGTGAGCTCTTCAAGTTG CTTCGATGGTACTCGTGAGAACTGTGGTCACGGCGTCAGGCCTCACGGACA TTTTGTACAGATGTTCGCAG CTGCGAGTACCAGTCATGTTTCGGAACGAATTTTGGCCACAATTAGTCGGTGATCGGTACATGTGAAGTTGTGAACTGCTGGATAGATTAAGGCAGTGGCGCCGTAATGGCATTATATCACAAACCAAAATTGATCGTGATAGCATTTTATGCCTTGTTTTAAAAAAAAG] [-] EMBL CB681617 [ AAAATGCTTTGGAGCAAGCTCTTAGTGCTGCTGTGACATGCACAATATTGGCTGGTGCTGGTCCGCAACGATCTCGTGTTCTTGCTACATTGTACAAGGATGAGAGATGCTCAAAGTT GAAGAT ATACCCAATACTGC AGAAGG TCTTTCTTG AAAGGA TTTTGAGGAAA CCAGAAA TTG AAGCATTTGCA GAGGAGCTGAGACC GCATC AAAAAGCTCTGTTACCAGATAAGTCTACT GTGCTTGACCGGGCAATGATTGAGCATAACCTCCTTAGTGCCAGTAAACTTTACACTAATATCA GCTTTGATGAGCTTGGAGCA TTATTGGGCATTGACCCTAGGAAGGCTGAAAAGATAGCATCGCGAATGATTTATGAAGATAGGATGCGAGGTTCAATTGATCAGGTTGAAGCTGTGATACATTTTGAGGATGACACTGAAGAGCTGCAGCAGTGGGACCAACAGATTGCGGGACTGTGCCAAGCGCTGAACGACA TTCTGGACAGCATGTCAAGCAAGGGAATGGCTATTCCTGTGTGAGCTCTTCAAGTTG CTTCGATGGTACTCGTGAGAACTGTGGTCACGGCGTCAGGCCTCACGGACA TTTTGTACAGATGTTCGCAG CTGCGAGTACCAGTCATGTTTCGGAACGAATTTTGGCCACAATTAGTCGGTGATCGGTACATGTGAAGTTGTGAACTGCTGGATAGATTAAGGCAGTGGCGCCGTAATGGCATTATATCACAAACCAAAATTGAT ] [-] EMBL CB683836 [ GCACAATATTGGCTGGTGCTGGTCCGCAACGATCTCGTGTTCTTGCTACATTGTACAAGGATGAGAGATGCTCAAAGTT GAAGAT ATACCCAATACTGC AGAAGG TCTTTCTTG AAAGGA TTTTGAGGAAA CCAGAAA TTG AAGCATTTGCA GAGGAGCTGAGACC GCATC AAAAAGCTCTGTTACCAGATAAGTCTACT GTGCTTGACCGGGCAATGATTGAGCATAACCTCCTTAGTGCCAGTAAACTTTACACTAATATCA GCTTTGATGAGCTTGGAGCA TTATTGGGCATTGACCCTAGGAAGGCTGAAAAGATAGCATCGCGAATGATTTATGAAGATAGGATGCGAGGTTCAATTGATCAGGTTGAAGCTGTGATACATTTTGAGGATGACACTGAAGAGCTGCAGCAGTGGGACCAACAGATTGCGGGACTGTGCCAAGCGCTGAACGACA TTCTGGACAGCATGTCAAGCAAGGGAATGGCTATTCCTGTGTGAGCTCTTCAAGTTG CTTCGATGGTACTCGTGAGAACTGTGGTCACGGCGTCAGGCCTCACGGACA TTTTGTACAGATGTTCGCAG CTGCGAGTACCAGTCATGTTTCGGAACGAATTTTGGCCACAATTAGTCGGTGATCGGTACATGTGAAGTTGTGAACTGCTGGATAGATTAAGGCAGTGGCGCCGTAATGGCATTATATCACAAACCAAAATTGATC ] [+] EMBL AU161372 [ AAGTTNAAAGATAATNCCCAATACTGCAANAAGGTTCTTTCTTGAAAAGGATTTTTGAGGAAACCCAGAAATTTGAAAGCATTTGCANAAGGGGTNAAGACCGGCATCAAAAAAGCTCTGTTACCAGATAAGTNTACTGGTGCTTGACCGGGCAATGATTGAGCATAACCTCCTTAGTGCCAGTAAACTTTACACTAATATCA GCTTTGATGAGCTTGGAGCA TTATTGGGCATTGACCCTAGGAAGGCTGAAAAGATAGCATCGCGAATGATTTATGAAGATAGGATGCGAGGTTCAATTGATCAGGTTNAAGCTGTGATACATTTTGAGGATGACACTGAAGAGCTGCAGCAGTGGGACCAACAGATTGCGGGACTGTGCCAAGCGCTGAACGACA TTCTGGACAGCATGTCAAGCAAGGGAATGGCTATTCCTGTGTGAGCTCTTCAAGTTG CTTCGATGGTACTCGTGAGAACTGTGGTCACGGCGTCAGGCCTCACGGACA TTTTGTACAGATGTTCGCAG CTGCGAGTACCAGTCATGTTTCGGAACGAATTTTGGCCACAATTAGTCGGTGATCGGTACATGTGAAGTTGTGAACTGCTGGATAGATTAAGGCAGTGGCGCCGTAATGGCATTATATCACAAACCAAAAaa ] [+] EMBL BI811252 [ ACACTAATATCACGCTTTGATGAGCTTGGAGCACTTATTGGGCATTGACCCTAGGAAGGCTGAAAAGATAGCATCGCGAATGATTTATGAAGATAGGATGCGAGGTTCAATTGATCAGGTTGAACCTGTGATACATTTTGAGGATGACACTGAAGAGCTGCAGCCGTGGGACCAACAGATTGCGGGACTGTGCCAAGCGCTGAACGACACTTCTGGACAGCATGTCAAGCAAGGGAATGGCTATTCCTGTGTGAGCTCTTCAAGTTGCCTTCGATGGTACTCGTGAGAACTGTGGTCACGGCGTCAGGCCTCACGGACACTTTTGTACAGATGTTCGCAGCCTGCGAGTACCAGTCATGTTTCGGAACGAATTTTGGGCACAATTAGTCGGTGATCGGTACATGTGAAGTTGTGAACTGCTGGATAGATTAAGGCAGTGGCCCCGTAATGGCATTATATCACAAACC AAATTGATCGTGATAGCCTTTTATGCCTaaaaaaa ] consensusID : consensus_14088#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 554 fasta sequence [TGCTTGACCGGCATGATTGAAGCATAACCTCCTTAGTGCCAGTAAACTTTTACACTAATATCAGCTTTGATGAGCTTGGACATTATTGGGCATTGACCCTAGGAAGCTGAAAAGATAGCATCGCGAATGATTTATGAAGATAGGATGCGAGGTTCAATTGATCAGGTTGAAGCTGTGATACACTTTTGAGGATGACCTGAAGAGCTGCAGCAGTGGGACCACAGATTGCGGGACTGTGCCAAGCGCTGAACGACATTCTGGACAGCATGTCAAGCAAGGGAATGGCTATTCCTGTGTGAGCTCTTCAAGTTGCTTCGATGGTACTCGTGAGAACTGTGGTCACGGCGTCAGGCCTCACGGACATTTTGTACAGATGTTCGCAGCTGCGAGTACCAGTCATGTTTCGGAACGAATTTTGGGCACATTAGTCGGTGATCGGTACATGTGAAGTTGTGAACTGCTGGATAGATTAAGGCAGTGGCGCCGTAATGGCATTATATCACAACCAAATTGATCGTGATAGCATTTTATGCCTTGTTTTCTTCTGGTAAAAA] [+] EMBL BI808666 [TGCTTGACCGGCATGATTGAAGCATAACCTCCTTAGTGCCAGTAAACTTTTACACTAATATCAGCTTTGATGAGCTTGGACATTATTGGGCATTGACCCTAGGAAGCTGAAAAGATAGCATCGCGAATGATTTATGAAGATAGGATGCGAGGTTCAATTGATCAGGTTGAAGCTGTGATACACTTTTGAGGATGACCTGAAGAGCTGCAGCAGTGGGACCACAGATTGCGGGACTGTGCCAAGCGCTGAACGACATTCTGGACAGCATGTCAAGCAAGGGAATGGCTATTCCTGTGTGAGCTCTTCAAGTTGCTTCGATGGTACTCGTGAGAACTGTGGTCACGGCGTCAGGCCTCACGGACATTTTGTACAGATGTTCGCAGCTGCGAGTACCAGTCATGTTTCGGAACGAATTTTGGGCACATTAGTCGGTGATCGGTACATGTGAAGTTGTGAACTGCTGGATAGATTAAGGCAGTGGCGCCGTAATGGCATTATATCACAACCAAATTGATCGTGATAGCATTTTATGCCTTGTTTTCTTCTGGTAAAAA] consensusID : consensus_14088#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 495 fasta sequence [GAAGGCTGTCAGAAGANTAGCATTCCCGAAAGTGATTTAGTGAAAGATTAGGGATCCGAGGTTCAANTGATCAGGTTGAAGCTGTGATACATTTTGAGGANGACACCTGAAGAGCTGCAGCAGTGGGACCCACAGATTGNCGGGACTGTGGCACACAGCGCCTGAGACGACACTTTCTGGACAGCATGTCAAGCCAAGGGAATGGCTATTCCTGTGGTGAGCTTNTTCAAGTTGCTTCGATGGTACTCCGTGAGAACTTGTGGTCACGGCGGTCAGGCCTCCACGGACATTTTGTACANATGTTTCGCACGCTGCGAGTACCAGTCATGTTTCGGAACGAATTTTGGGCACAATTAGTCGGTGATCGGTACCATGTGAAGTTGTGAACTGCCTGGATAGATTAAGGCCAGTGGCCCCGTAATGGCATTATATCACAAACCCCAAATTGATCGNGATAGCATTTTATCCCTTGTTTTNTGTNTGGTAAAAAAAAAA] [+] EMBL BQ909018 [GAAGGCTGTCAGAAGANTAGCATTCCCGAAAGTGATTTAGTGAAAGATTAGGGATCCGAGGTTCAANTGATCAGGTTGAAGCTGTGATACATTTTGAGGANGACACCTGAAGAGCTGCAGCAGTGGGACCCACAGATTGNCGGGACTGTGGCACACAGCGCCTGAGACGACACTTTCTGGACAGCATGTCAAGCCAAGGGAATGGCTATTCCTGTGGTGAGCTTNTTCAAGTTGCTTCGATGGTACTCCGTGAGAACTTGTGGTCACGGCGGTCAGGCCTCCACGGACATTTTGTACANATGTTTCGCACGCTGCGAGTACCAGTCATGTTTCGGAACGAATTTTGGGCACAATTAGTCGGTGATCGGTACCATGTGAAGTTGTGAACTGCCTGGATAGATTAAGGCCAGTGGCCCCGTAATGGCATTATATCACAAACCCCAAATTGATCGNGATAGCATTTTATCCCTTGTTTTNTGTNTGGTAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14088#0 GAGCTTTTCCTCCCATCTTCCCCGCAGATCAAACGCCCCCCAAAACCCTAGGCCCCCCTT 60 consensus_14088#1 ------------------------------------------------------------ consensus_14088#2 ------------------------------------------------------------ consensus_14088#0 CTCCTCCGACGCCGGCTACAGTCTCCGACCCCTCCGGCGCAATCGCGGAATCGGAGGCGG 120 consensus_14088#1 ------------------------------------------------------------ consensus_14088#2 ------------------------------------------------------------ consensus_14088#0 CGGGCGGCGCCATGGACAACGCCCTCGCGAGCGCCGCGGCGATCGCCGACCAGCGCCAGA 180 consensus_14088#1 ------------------------------------------------------------ consensus_14088#2 ------------------------------------------------------------ consensus_14088#0 AGATCGAGCAGTACCGCCACATCCTCTCCTCCGTCCTCTCGTTTTCCCCGCCGGACATCT 240 consensus_14088#1 ------------------------------------------------------------ consensus_14088#2 ------------------------------------------------------------ consensus_14088#0 CGCAGGCGAAGCGCTTCCTCGACCACATGGTTTCCGACGAGGTGCCGCTCGTGGTGTCGC 300 consensus_14088#1 ------------------------------------------------------------ consensus_14088#2 ------------------------------------------------------------ consensus_14088#0 GGCAGCTGCTGCAGACGTTCGCCCAGGAGCTTGGGAGGTTGGAGCCAGAGGCTCAGAAGG 360 consensus_14088#1 ------------------------------------------------------------ consensus_14088#2 ------------------------------------------------------------ consensus_14088#0 AGGTCGCGCACTACGCGCTCACGCAGATCCAGCCTCGTGTGGTCTCCTTCGAGGAGCAGG 420 consensus_14088#1 ------------------------------------------------------------ consensus_14088#2 ------------------------------------------------------------ consensus_14088#0 TGGTAGTGATTAGAGAGAAGCTTGCAGAACTGTATGAGTCTGAACAACAATGGTCAAAAG 480 consensus_14088#1 ------------------------------------------------------------ consensus_14088#2 ------------------------------------------------------------ consensus_14088#0 CTGCACAGATGCTTAGTGGGATTGACTTGGACTCAGGGATCAGGATGCTGGATGACACAA 540 consensus_14088#1 ------------------------------------------------------------ consensus_14088#2 ------------------------------------------------------------ consensus_14088#0 ACAAATTATCCAAATGTGTCCAGATTGCACGACTTTATTTAGAGGATGATGATTCTGTTA 600 consensus_14088#1 ------------------------------------------------------------ consensus_14088#2 ------------------------------------------------------------ consensus_14088#0 ATGCTGAAGCTTTTATTAACAAAGCTTCATTTTTGGTAACAAACAGTCACCAAGAACTTC 660 consensus_14088#1 ------------------------------------------------------------ consensus_14088#2 ------------------------------------------------------------ consensus_14088#0 TGAACTTACAGTACAAGGTATGCTACGCTAGAATTTTGGATCTGAAGAGAAGATTCTTGG 720 consensus_14088#1 ------------------------------------------------------------ consensus_14088#2 ------------------------------------------------------------ consensus_14088#0 AAGCTGCACTTCGATACTATGACATCTCTCAGATTGAACAACGCCAAATTGGTGACGAAG 780 consensus_14088#1 ------------------------------------------------------------ consensus_14088#2 ------------------------------------------------------------ consensus_14088#0 AGATCGATGAAAATGCTTTGGAGCAAGCTCTTAGTGCTGCTGTGACATGCACAATATTGG 840 consensus_14088#1 ------------------------------------------------------------ consensus_14088#2 ------------------------------------------------------------ consensus_14088#0 CTGGTGCTGGTCCGCAACGATCTCGTGTTCTTGCTACATTGTACAAGGATGAGAGATGCT 900 consensus_14088#1 ------------------------------------------------------------ consensus_14088#2 ------------------------------------------------------------ consensus_14088#0 CAAAGTTGAAGATATACCCAATACTGCAGAAGGTCTTTCTTGAAAGGATTTTGAGGAAAC 960 consensus_14088#1 ------------------------------------------------------------ consensus_14088#2 ------------------------------------------------------------ consensus_14088#0 CAGAAATTGAAGCATTTGCAGAGGAGCTGAGACCGCATCAAAAAGCTCTGTTACCAGATA 1020 consensus_14088#1 ------------------------------------------------------------ consensus_14088#2 ------------------------------------------------------------ consensus_14088#0 AGTCTACTGTGCTTGACCGGGCAATGATTGA-GCATAACCTCCTTAGTGCCAGTAAACTT 1079 consensus_14088#1 ---------TGCTTGACCGG--CATGATTGAAGCATAACCTCCTTAGTGCCAGTAAACTT 49 consensus_14088#2 ------------------------------------------------------------ consensus_14088#0 T-ACACTAATATCAGCTTTGATGAGCTTGGAGCATTATTGGGCATTGACCCTAGGAAGGC 1138 consensus_14088#1 TTACACTAATATCAGCTTTGATGAGCTTGGA-CATTATTGGGCATTGACCCTAGGAAG-C 107 consensus_14088#2 ---------------------------------------------------GAAGGCTGT 9 * * consensus_14088#0 TGAAAAGATAGCAT---CGCGAATGATTTAT--GAAGAT--AGGATGCGAGGTTCAATTG 1191 consensus_14088#1 TGAAAAGATAGCAT---CGCGAATGATTTAT--GAAGAT--AGGATGCGAGGTTCAATTG 160 consensus_14088#2 CAGAAGANTAGCATTCCCGAAAGTGATTTAGTGAAAGATTAGGGATCCGAGGTTCAANTG 69 ** ****** ** * ******* ***** **** ********** ** consensus_14088#0 ATCAGGTTGAAGCTGTGATACA-TTTTGAGGATGACA-CTGAAGAGCTGCAGCAGTGGGA 1249 consensus_14088#1 ATCAGGTTGAAGCTGTGATACACTTTTGAGGATGAC--CTGAAGAGCTGCAGCAGTGGGA 218 consensus_14088#2 ATCAGGTTGAAGCTGTGATACA-TTTTGAGGANGACACCTGAAGAGCTGCAGCAGTGGGA 128 ********************** ********* *** ********************** consensus_14088#0 CCAACAGATTGC-GGGACTGTGCCA---AGCGCT--GAACGACA--TTCTGGACAGCATG 1301 consensus_14088#1 CCA-CAGATTGC-GGGACTGTGCCA---AGCGCT--GAACGACA--TTCTGGACAGCATG 269 consensus_14088#2 CCCACAGATTGNCGGGACTGTGGCACACAGCGCCTGAGACGACACTTTCTGGACAGCATG 188 ** ******* ********* ** ***** ****** ************** consensus_14088#0 TCAAGC-AAGGGAATGGCTATTCCTGTG-TGAGCT-CTTCAAGTTGCTTCGATGGTACTC 1358 consensus_14088#1 TCAAGC-AAGGGAATGGCTATTCCTGTG-TGAGCT-CTTCAAGTTGCTTCGATGGTACTC 326 consensus_14088#2 TCAAGCCAAGGGAATGGCTATTCCTGTGGTGAGCTTNTTCAAGTTGCTTCGATGGTACTC 248 ****** ********************* ****** *********************** consensus_14088#0 -GTGAGAACT-GTGGTCACGGCG-TCAGGCCTC-ACGGACATTTTGTACAGATGTT-CGC 1413 consensus_14088#1 -GTGAGAACT-GTGGTCACGGCG-TCAGGCCTC-ACGGACATTTTGTACAGATGTT-CGC 381 consensus_14088#2 CGTGAGAACTTGTGGTCACGGCGGTCAGGCCTCCACGGACATTTTGTACANATGTTTCGC 308 ********* ************ ********* **************** ***** *** consensus_14088#0 A-GCTGCGAGTACCAGTCATGTTTCGGAACGAATTTTGGCCACAATTAGTCGGTGATCGG 1472 consensus_14088#1 A-GCTGCGAGTACCAGTCATGTTTCGGAACGAATTTTGGGCACA-TTAGTCGGTGATCGG 439 consensus_14088#2 ACGCTGCGAGTACCAGTCATGTTTCGGAACGAATTTTGGGCACAATTAGTCGGTGATCGG 368 * ************************************* **** *************** consensus_14088#0 TAC-ATGTGAAGTTGTGAACTGC-TGGATAGATTAAGGC-AGTGGCGCCGTAATGGCATT 1529 consensus_14088#1 TAC-ATGTGAAGTTGTGAACTGC-TGGATAGATTAAGGC-AGTGGCGCCGTAATGGCATT 496 consensus_14088#2 TACCATGTGAAGTTGTGAACTGCCTGGATAGATTAAGGCCAGTGGCCCCGTAATGGCATT 428 *** ******************* *************** ****** ************* consensus_14088#0 ATATCACAAAC-CAAAATTGATCGTGATAGCATTTTATGCCTTGTTTT------AAAAAA 1582 consensus_14088#1 ATATCACAA---CCAAATTGATCGTGATAGCATTTTATGCCTTGTTTTCT-TCTGGTAAA 552 consensus_14088#2 ATATCACAAACCCCAAATTGATCGNGATAGCATTTTATCCCTTGTTTTNTGTNTGGTAAA 488 ********* * ********** ************* ********* *** consensus_14088#0 AAG---- 1585 consensus_14088#1 AA----- 554 consensus_14088#2 AAAAAAA 495 ** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||