These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14096#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1926 fasta sequence [TACGAACCCGAGCACCCGAGCCATCCCGACCGGCCGGAGAGCGAGCCCTAG-GGCAG-AGCGGCGGAGGCGGAGGCCGGAGGCGAACGGGAGGCCGGCGAGATGTCGTCGGTGTACGTGCTGGAGCCGCCGACGAAGGGCAAGGTGGTAGTGCAGACGACGGCCGGCCCGCTCGACATCGAGCTGTGGCCGAAGGAGGCCCCCAAGGCGGTGCGCAACTTCGTGCAGCTCTGCCTCGAGGGCTACTACGACGGCAC-GCTCTTCCACCGCGTCATCAAGTCCTTCCTCGTCCAGGGCGGCGACCCCACCGGCTCCGGCACCGGGGGTGAGAGCATATATGGGGCCCCATTTGCAGATGAGTTCCATACGCGCTTGAGGTTTAACCACAGGGGTTTAGTGGCGTGTGCCAATGCCGGCACGCCTCACTCGAATGGGAGTCAATTCTTTATCAGCCTTGACCGTTGTGATTGGCTCGATAAGAAGAATACCATCTTTGGGAAGGTCACTGGCGATTCTATTTTCAACCTTCTAGCCTTGGCTGATATCGAGACTGATAAGGATGATCGACCTGTGTATCCGCAGAAAATTCTTTCAGTTGAGGTACTCTGGAACCCATTTGATGATATTGTTCCAAGGCAACTTAAGAAGACTGAGCCTACTGCCAAGGGTGATATCGAGGGGAAATCAAAGAAGAAAGCCGTTAAGCAACTTAATGTGCTTTCATTTGGAGATGAAGTAGAAGAGGAGGAGAATGAGGCAGCATCCTCTGTGAAGGACAAAATAAAAAGTATTCACGATGTGTTGGATGATCCTCGGTTTCTTAAAGGAGAGGCACCGGATGAGCAACTGACCAAGGAGCAAGAGGACAAAAAAAAGGAGACTGTTCAATCTGTCAGGGAGGCTTTAGTATCAAAAAAATCTGACTTCAGAGAGCTAGAGCATGATTCAGAAACAGATGATTATCCTGACGATGAAAACGAGGAGGATTTTGATAACAGAATGCGCTCTCAAATTCTAAGAAAACGCAGGGAGCTTGGGGACATCCGCTCTAGTGAAACCTCC-AAAAAAACAGATAAAGCACACCGTAAAGACAAGGAGTTACCAGTTCACAGGAGTGACGATGACAATGATGACGACAATGAAGACCACCAGCTAACCAAGTCTAGAAAATTTTCTATGAAGAAAAAAGGCATTGGCTCAGAAGCCAGTGCTGAAAGGATGTCCAAAGGCGATGCTAATTTGCAGCTATTGAATCCAGCTGAGCAAGAGAAGCATTTGCAAAAACAGAAAAGGCGCCGTCTTCAAGGCCGTGAAGATGAGACGTTAGCGAAGCTACAGAAGTTCAAGGGATCGTTTCTCAGTAAGAACCCTGCAACTGGTAACACAGAAAAGAAGACTGATGAAGAGGATTACACAGGGTGGCACAGCAACCGGCTGACTTTTGAACCTGATTCTTCTAAGGATGGAATGACGAGGAAAGATGATCCAGATGACTATGTAGTGGTTGATCCTCTCCTTGAGAAAGGAAAACAAAAATTCAACAAGATGCAAGCAAAGCTTAAGCGGAGAGAACGTGAATGGGCAGGCAGATCTCTGACCTGACCGCATAAGCTGCTTGAGGTGCTTTACTGTTTCCTTCATAAGCGGCCTTCCTGAATTTTTCAGCTTACATTAATTTATCCTTTTTTTGCCTCTCAGAGGTGCACCGTGCAAAAGATTACCTCATATCATAACAGTGCCACTACTGCAGTTTTGATGGTGTTGTAACTGTACACTGCGTTTCGCTATGTTGTGGTTCATGGTAGAGGGACCACCTGTAGACTAGTGCTTTTAACATTAACATTTGTATCATTGTCAATCAAACTGTAAATAACAATTGTTTTAAACTTAGAGGTTCATAATGCCCTTATTAAGTTGCAGTGGTCTTTT] [+] EMBL AK069484 [TACGAACCCGAGCACCCGAGCCATCCCGACCGGCCGGAGAGCGAGCCCTAG GGCAG AGCGGCGGAGGCGGAGGCCGGAGGCGAACGGGAGGCCGGCGAGATGTCGTCGGTGTACGTGCTGGAGCCGCCGACGAAGGGCAAGGTGGTAGTGCAGACGACGGCCGGCCCGCTCGACATCGAGCTGTGGCCGAAGGAGGCCCCCAAGGCGGTGCGCAACTTCGTGCAGCTCTGCCTCGAGGGCTACTACGACGGCAC GCTCTTCCACCGCGTCATCAAGTCCTTCCTCGTCCAGGGCGGCGACCCCACCGGCTCCGGCACCGGGGGTGAGAGCATATATGGGGCCCCATTTGCAGATGAGTTCCATACGCGCTTGAGGTTTAACCACAGGGGTTTAGTGGCGTGTGCCAATGCCGGCACGCCTCACTCGAATGGGAGTCAATTCTTTATCAGCCTTGACCGTTGTGATTGGCTCGATAAGAAGAATACCATCTTTGGGAAGGTCACTGGCGATTCTATTTTCAACCTTCTAGCCTTGGCTGATATCGAGACTGATAAGGATGATCGACCTGTGTATCCGCAGAAAATTCTTTCAGTTGAGGTACTCTGGAACCCATTTGATGATATTGTTCCAAGGCAACTTAAGAAGACTGAGCCTACTGCCAAGGGTGATATCGAGGGGAAATCAAAGAAGAAAGCCGTTAAGCAACTTAATGTGCTTTCATTTGGAGATGAAGTAGAAGAGGAGGAGAATGAGGCAGCATCCTCTGTGAAGGACAAAATAAAAAGTATTCACGATGTGTTGGATGATCCTCGGTTTCTTAAAGGAGAGGCACCGGATGAGCAACTGACCAAGGAGCAAGAGGACAAAAAAAAGGAGACTGTTCAATCTGTCAGGGAGGCTTTAGTATCAAAAAAATCTGACTTCAGAGAGCTAGAGCATGATTCAGAAACAGATGATTATCCTGACGATGAAAACGAGGAGGATTTTGATAACAGAATGCGCTCTCAAATTCTAAGAAAACGCAGGGAGCTTGGGGACATCCGCTCTAGTGAAACCTCCAAAAAAAACAGATAAAGCACACCGTAAAGACAAGGAGTTACCAGTTCACAGGAGTGACGATGACAATGATGACGACAATGAAGACCACCAGCTAACCAAGTCTAGAAAATTTTCTATGAAGAAAAAAGGCATTGGCTCAGAAGCCAGTGCTGAAAGGATGTCCAAAGGCGATGCTAATTTGCAGCTATTGAATCCAGCTGAGCAAGAGAAGCATTTGCAAAAACAGAAAAGGCGCCGTCTTCAAGGCCGTGAAGATGAGACGTTAGCGAAGCTACAGAAGTTCAAGGGATCGTTTCTCAGTAAGAACCCTGCAACTGGTAACACAGAAAAGAAGACTGATGAAGAGGATTACACAGGGTGGCACAGCAACCGGCTGACTTTTGAACCTGATTCTTCTAAGGATGGAATGACGAGGAAAGATGATCCAGATGACTATGTAGTGGTTGATCCTCTCCTTGAGAAAGGAAAACAAAAATTCAACAAGATGCAAGCAAAGCTTAAGCGGAGAGAACGTGAATGGGCAGGCAGATCTCTGACCTGACCGCATAAGCTGCTTGAGGTGCTTTACTGTTTCCTTCATAAGCGGCCTTCCTGAATTTTTCAGCTTACATTAATTTATCCTTTTTTTGCCTCTCAGAGGTGCACCGTGCAAAAGATTACCTCATATCATAACAGTGCCACTACTGCAGTTTTGATGGTGTTGTAACTGTACACTGCGTTTCGCTATGTTGTGGTTCATGGTAGAGGGACCACCTGTAGACTAGTGCTTTTAACATTAACATTTGTATCATTGTCAATCAAACTGTAAATAACAATTGTTTTAAACTTAGAGGTTCATAATGCCCTTATTAAGTTGCAGTGGTCTTTT] [+] EMBL CB651585 [ GGCCGGAGAGCGAGCCCTAG GGCAG AGCGGCGGAGGCGGAGGCCGGAGGCGAACGGGAGGCCGGCGAGATGTCGTCGGTGTACGTGCTGGAGCCGCCGACGAAGGGCAAGGTGGTAGTGCAGACGACGGCCGGCCCGCTCGACATCGAGCTGTGGCCGAAGGAGGCCCCCAAGGCGGTGCGCAACTTCGTGCAGCTCTGCCTCGAGGGCTACTACGACGGCAC GCTCTTCCACCGCGTCATCAAGTCCTTCCTCGTCCAGGGCGGCGACCCCACCGGCTCCGGCACCGGGGGTGAGAGCATATATGGGGCCCCATTTGCAGATGAGTTCCATACGCGCTTGAGGTTTAACCACAGGGGTTTAGTGGCGTGTGCCAATGCCGGCACGCCTCACTCGAATGGGAGTCAATTCTTTATCAGCCTTGACCGTTGTGATTGGCTCGATAAGAAGAATACCATCTTTGGGAAGGTCACTGGCGATTCTATTTTCAACCTTCTAGCCTTGGCTGATATCGAGACTGATAAGGATGATCGACCTGTGTATCCGCAGAAAATTCTTTCAGTTGAGGTACTCTGGAACCCATTTGATGATATTGTTCCAAGGCAACTTAAGAAGACTGAGCCTACTGCCAAGGGTGATATCGAGGGGAAATCAAAGAAGAAAGCCGTTAAGCAACTTAATGTGCTTTCATTTGGAGATGAAGTAGAAGAGGAGGAGAATGAGGCAGCATCCTCTGTGAACGACAAAATAAAAAGTATTCACGATGTGTT ] [+] EMBL CB628452 [ aAGACC AGCGGCGGCGGCGGCGGAGGCGGAGGCCGGAGGCGAACGGGAGGCCGGCGAGATGTCGTCGGTGTACGTGCTGGAGCCGCCGACGAAGGGCAAGGTGGTAGTGCAGACGACGGCCGGCCCGCTCGACATCGAGCTGTGGCCGAAGGAGGCCCCCAAGGCGGTGCGCAACTTCGTGCAGCTCTGCCTCGAGGGCTACTACGACGGCAC GCTCTTCCACCGCGTCATCAAGTCCTTCCTCGTCCAGGGCGGCGACCCCACCGGCTCCGGCACCGGGGGTGAGAGCATATATGGGGCCCCATTTGCAGATGAGTTCCATACGCGCTTGAGGTTTAACCACAGGGGTTTAGTGGCGTGTGCCAATGCCGGCACGCCTCACTCGAATGGGAGTCAATTCTTTATCAGCCTTGACCGTTGTGATTGGCTCGATAAGAAGAATACCATCTTTGGGAAGGTCACTGGCGATTCTATTTTCAACCTTCTAGCCTTGGCTGATATTGAGACTGATAAGGATGATCGACCTGTGTATCCGCAGAAAATTCTTTCAGTTGAGGTACTCTGGAACCCATTTGATGATATTGTTCCAAGGCAACTTAAGAAGACTGAGCCTACTGCCAAGGGTGATATCGAGGGGAAATCAAAGAAGAAAGCCGTTAAGCAACTTAATGTGCTTTCATTTGGAGATGAAGTAGAAGAGGAGGAGAATGAGGCAGCATCCTCTGTGAAGGACAAAATAAAAAGTATTCACAATGTGTTGGATGA ] [+] EMBL CB659952 [ AG GGCAG AGCGGCGGAGGCGGAGGCCGGAGGCGCACGGGAGGCCGGCGAGATGTCGTCGGTGTACGTGCTGGAGCCGCCGACGAAGGGCAAGGTGGTAGTGCAGACGACGGCCGGCCCGCTCGACATCGAGCTGTGGCCGAAGGAGGCCCCCAAGGCGGTGCGCAACTTCGTGCAGCTCTGCCTCGAGGGCTACTACGACGGCAC GCTCTTCCACCGCGTCATCAAGTCCTTCCTCGTCCA GGCGGCGACCCCACCGGCTCCGGCACCGGGGGTGAGAGCATATATGGGGCCCCATTTGCAGATGAGTTCCATACGCGCTTGAGGTTTAACCACAGGGGTTTAGTGGCGTGTGCCAATGCCGGCACGCCTCACTCGAATGGGAGTCAATTCTTTATCAGCCTTGACCGTTGTGATTGGCTCGATAAGAAGAATACCATCTTTGGGAAGGTCACTGGCGATTCTATTTTCAACCTTCTAGCCTTGGCTGATATCGAGACTGATAAGGATGATCGACCTGTGTATCCGCAGAAAATTCTTTCAGTTGAGGTACTCTGGAACCCATTTGATGATATTGTTCCAAGGCAACTTAAGAAGACTGAGCCTACTGCCAAGGGTGATATCGAGGGGAAATCAAAGAAGAAAGCCGTTAAGCAACTTAATGTGCTTTCATTTGGAGATGAAGTAGAAGAGGAGGAGAATGAGGCAGCATCCTCTGTGAAGGACAAAATAAAAAGTATTCACGATGTGTTGGATGATCCTCGGTTTCTTAAAGGAGAGGCACCGGATGAGCAACTGACCAAGGAGCAAGAGGACANAAAAAAGGAGACT ] [+] EMBL CB659990 [ GGGCTACTACTACTGCAC GCTCTTCCACCGCGTCATCGAGTCCTTCCTCGTCCA GGCGGCGACCCCACCGGCTCCGGCACCGGGGGTGAGAGCATATATGGGGCCCCATTTGCAGATGAGTTCCATACGCTCTTGATGTTTAACCACAGGGGTTTAGTGGCGTGTGCCAATGCCGGCACGCCTCACTCGAATGGGAGTCAATTCTTTATCAGCCTTGACCGTTGTGATTGGCTCGATAAGAACAATACCATCTTTGGGAAGGTCACTGGCGATTCTATTTTCAACCTTCTATCCTTGGCTGATATCCAGACTGATAAGGATGATCGACCTGTGTATCCGCATAAAATTCTTTCACTTGAGGTACTCTGGAACCCATTTGATGATATTGTTC ] [+] EMBL CB662355 [ GACCGCACTGCTCTTCCACCGCGTCATCAAGTCCTTCCTCGTCCAGGGTGGCGACCCCACCGGCTCCGGCACCGGGGGTGAGAGCATATATGGGGCCCCATTTGCAGATGAGTTCCATACGCGCTTGAGGTTTAACCACAGGGGTTTAGTGGCGTGTGCCAATGCCGGCACGCCTCACTCGAATGGGAGTCAATTCTTTATCAGCCTTGACCGTTGTGATTGGCTCGATAAGAAGAATACCATCTTTGGGAAGGTCACTGGCGATTCTATTTTCAACCTTCTAGCCTTGGCTGATATCGAGACTGATAAGGATGATCGACCTGTGTATCCGCAGAAAATTCTTTCAGTTGAGGTACTCTGGAACCCATTTGATGATATTGTTCCAAGGCAACTTAAGAAGACTGAGCCTACTGCCAAGGGTGATATCGAGGGGAAATCAAAGAAGAAAGCCGTTAAGCAACTTAATGTGCTTTCATTTGGAGATGAAGTAGAAGAGGAGGAGAATGAGGCAGCATCCTCTGTGAAGGACAAAATAAAAAGTATTCACGATGTGTTGGATGATCCTCGGTTTCTTAAAGGAGAGGCACCGGATGAGCAACTGACCAAGGAGCAAGAGGACAAAAAAAAGGAGACTGTTCAATCTGTCAGGGAGGCTTTAGTATCAAAAAAATCTGACTTCAGAGAGCTAGAGCATGATTCAGAAACAGATGATTATCCTGACGATGAAAACGAGGAGGATTTTGATAACAGAATGCGCTCTCAAATTCTAAGAAAACGCAGGGAGCTTGGGGACATCCGCTCTAGTGAAACCTCC AAAAAAACAGATAA ] [+] EMBL CB662356 [ GACGGTTC GCTCTTCCACCGCGTCATCAAGTCCTTCCTCGTCCAGGGCGGCGACCCCACCGGCTCCGGCACCGGGGGTGAGAGCATATATGGGGCCCCATTTGCAGATGAGTTCCATACGCGCTTGAGGTTTAACCACAGGGGTTTAGTGGCGTGTGCCAATGCCGGCACGCCTCACTCGAATGGGAGTCAATTCTTTATCAGCCTTGACCGTTGTGATTGGCTCGATAAGAAGAATACCATCTTTGGGAAGGTCACTGGCGATTCTATTTTCAACCTTCTAGCCTTGGCTGATATCGAGACTGATAAGGATGATCGACCTGTGTATCCGCAGAAAATTCTTTCAGTTGAGGTACTCTGGAACCCATTTGATGATATTGTTCCAAGGCAACTTAAGAAGACTGAGCCTACTGCCAAGGGTGATATCGAGGGGAAATCAAAGAAGAAAGCCGTTAAGCAACTTAATGTGCTTTCATTTGGAGATGAAGTAGAAGAGGAGGAGAATGAGGCAGCATCCTCTGTGAAGGACAAAATAAAAAGTATTCACGATGTGTTGGATGATCCTCGGTTTCTTAAAGGAGAGGCACCGGATGAGCAACTGACCAAGGAGCAAGAGGACAAAAAAAAGGAGACTGTTCAATCTGTCAGGGAGGCTTTAGTATCAAAAAAATCTGACTTCAGAGAGCTAGAGCATGATTCAGAAACAGATGATTATCCTGACGATGAAAACGAGGAGGATTTTGATAACAGAATGCGCTCTCAAATTCTAAGAAAACGCAGGGAGCTTGGGGACATCCGCTCTAGTGAAACCTCC AAAAAAACAGATAAAGCACACCGTAAAGACAAGGAGTTACCAGTTCAC ] [+] EMBL AU182026 [ AAGGATGGAATGCCGAGGAAAGATGATCCAGATGACTATGTAGTGGTTGATCCTCTCCTTGAGAAAGGAAAACAAAAATTCAACAAGATGCAAGCAAAGCTTAAGCGGAGAGAACGTGAATGGGCAGGCAGATCTNTGACCTGACCGCATAAGCTGCTTGAGGTGCTTTACTGTTTCCTTCATAAGCGGCCTTCCTGAATTTTTCAGCTTACATTAATTTATCCTTTTTTTGCCTCTCAGAGGTGCNCCGTGCAAAAGATTACCTCATATCATAACAGTGCCACTACTGCAGTTTTGATGGTGTTGTAACTGTACACTGCGTTTCGCTATGTTGTGGTTCATGGTAGAGGGACCACCTGTAGACTAGTGCTTTTAACATTAACATTTGTATCATTGTCAATCAAACTGTAAATAACAATTGTTTTAAAaa ] consensusID : consensus_14096#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 967 fasta sequence [GCGCTCTCAAA-TCTAAGAAAACGCAGGGAGCTTGGGGACATCCGCTCTAGTGAAACCTCCAAAAAAACAGATAAAGCACACCGTAAAGACAAGGAGTTACCAGTTCACAGGAGTGACGATGACAATGATGACGACAATGAAGACCACCAGCTAACCAAGTCTAGAAAATTTTCTATGAAGAAAAAAGGCATTGGCTCAGAAGCCAGTGCTGAAAGGATGTCCAAAGGCGATGCTAATTTGCAGCTATTGAATCCAGCTGAGCAAGAGAAGCATTTGCAAAAACAGAAAAGGCGCCGTCTTCAAGGCCGTGAAGATGAGACGTTAGCGAAGCTACAGAAGTTCAAGGCATCGTTTCTCAGTAAGAACCCTGCAACTGGTAACACAGAAAAGAAGACTGATGAAGAGGATTACACAGGGTGGCACAGCAACCGGCTGACTTTTGAACCTGATTCTTCTAAGGATGGAATGACGAGGAAAGATGATCCAGATGACTATGTAGTGGTTGAT-CCTCTCCTTGAGAAAGGAAAACAAAAATTCAACAAGATGCAAGCAAAGCTTAAGCGGAGAGAACGTGAATGGGCAGGCAGATCTCTGACCTGA-CCGCATAAGCTGCTTGAGAGGTGCACCGTGCAAAAGATTACCTCATATCATAACAGTGCCACTACTGCAGTTTTGATGGTGTTGTAACTGTACACTGCGTTTCGCTATGTTGTGGTTCATGGTAGAGGGACCACCTGTAGACTAGTGCTTTTAACATTAACATTTGTATCATTGTCAATCAAACTGTAAATAACAATTGTTTTAAACTTAGAGGTTCATAATGCCCTTATTAAGTTGCAGTGGTTTTTTTTTTTAATGGAATTTCTTTTGTGGTATCATGTGATAGCAGGACAGATTATTTATATAACCGCATAAATTGATCCGACTCTTATCTTGGAACAAAAAAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL CB659989 [GCGCTCTCAAA TCTAAGAAAACGCAGGGAGCTTGGGGACATCCGCTCTAGTGAAACCTCCAAAAAAACAGATAAAGCACACCGTAAAGACAAGGAGTTACCAGTTCACAGGAGTGACGATGACAATGATGACGACAATGAAGACCACCAGCTAACCAAGTCTAGAAAATTTTCTATGAAGAAAAAAGGCATTGGCTCAGAAGCCAGTGCTGAAAGGATGTCCAAAGGCGATGCTAATTTGCAGCTATTGAATCCAGCTGAGCAAGAGAAGCATTTGCAAAAACAGAAAAGGCGCCGTCTTCAAGGCCGTGAAGATGAGACGTTAGCGAAGCTACAGAAGTTCAAGGCATCGTTTCTCAGTAAGAACCCTGCAACTGGTAACACAGAAAAGAAGACTGATGAAGAGGATTACACAGGGTGGCACAGCAACCGGCTGACTTTTGAACCTGATTCTTCTAAGGATGGAATGACGAGGAAAGATGATCCAGATGACTATGTAGTGGTTGAT CCTCTCCTTGAGAAAGGAAAACAAAAATTCAACAAGATGCAAGCAAAGCTTAAGCGGAGAGAACGTGAATGGGCAGGCAGATCTCTGACCTGA CCGCATAAGCTGCTTGAGAGGTGCACCGTGCAAAAGATTACCTCATATCATAACAGTGCCACTACTGCAGTTTTGATGGTGTTGTAACTGTACACTGCGTTTCGCTATGTTGTGGTTCATGGTAGAGGGACCACCTGTAGACTAGTGCTTTTAACATTAACATTTGTATCATTGTCAATCAAACTGTAAATAACAATTGTTTTAAACTTAGAGGTTCATAATGCCCTTAT ] [-] EMBL CB659953 [GCGCTCTCAAATTCTAAGAAAACGCAGGGAGCTTGGGGACATCCGCTCTAGTGAAACCTCCAAAAAAACAGATAAAGCACACCGTAAAGACAAGGAGTTACCAGTTCACAGGAGTGACGATGACAATGATGACGACAATGAAGACCACCAGCTAACCAAGTCTAGAAAATTTTCTATGAAGAAAAAAGGCATTGGCTCAGAAGCCAGTGCTGAAAGGATGTCCAAAGGCGATGCTAATTTGCAGCTATTGAATCCAGCTGAGCAAGAGAAGCATTTGCAAAAACAGAAAAGGCGCCGTCTTCAAGGCCGTGAAGATGAGACGTTAGCGAAGCTACAGAAGTTCAAGGCATCGTTTCTCAGTAAGAACCCTGCAACTGGTAACACAGAAAAGAAGACTGATGAAGAGGATTACACAGGGTGGCACAGCAACCGGCTGACTTTTGAACCTGATTCTTCTAAGGATGGAATGACGAGGAAAGATGATCCAGATGACTATGTAGTGGTTGAT CCTCTCCTTGAGAAAGGAAAACAAAAATTCAACAAGATGCAAGCAAAGCTTAAGCGGAGAGAACGTGAATGGGCAGGCAGATCTCTGACCTGA CCGCATAAGCTGCTTGAGAGGTGCACCGTGCAAAAGATTACCTCATATCATAACAGTGCCACTACTGCAGTTTTGATGGTGTTGTAACTGTACACTGCGTTTCGCTATGTTGTGGTTCATGGTAGAGGGACCACCTGTAGACTAGTGCTTTTAACATTAACATTGGTATCATTGTCAATCAAACTGTAAATAACAATTG TTAAGACTTAGAGGTTCATAA ] [+] EMBL C28953 [ AGAAAACGCAGGGAGCTTGGGGACATCCGCTCTAGTGAAACCTCCAAAAAAACAGATAAAGCACACCGTAAAGACAAGGAGTTACCAGTTCACAGGAGTGACGATGACAATNATGACGACAATGAAGACCACCAGCTAACCAAGTNTAGAAANTTTNTTATGAAGAAAAAAGGCATTGGCTCAGAAGCCAGTNCTGAAAGGTTGTCCAAAGGCGATGCTAATTTNCAGCTATTGATTCCAGCTGAGCAAG ] [-] EMBL CB628453 [ TGGCTCAGAAGCCAGTGCTGAAAGGATGTCCAAAGGCGATGCTAATTTGCAGGTATTGAATCCAGCTGAGCAAGAGAAGCATTTGCAAAAACAGAAAAGGCGCCGTCTTCAAGGCCGTGAAGATGAGACGTTAGCGAAGTTACAGAAGTTCAAGGCATCGTTTCTCAGTAAGAACCCTGCAACTGGTAACACAGAAAAGAAGAGTGATGAAGAGGATTACACAGGGTGGCACAGCAACCGGTTGACTTTTGAACTTGATTCTTCTAAGGATGGAATGGCGAGGAAAGATGATCCAGATGACTATGTAGTGGTTGAT CCTCTCCTTGAGAAAGGAAAACAAAAATTCAACAAGATGCAAGCAAAGCTTAAGCGGAGAGAACGTGAATGGGCAGGCAGATCTCTGACCTGA CCGCATAAGCTGCTTGAGAGGTGCACCGTGCAAAAGATTACCTCATATCATAACAGTGCCACTACTGCAGTTTTGATGGTGTTGTAACTGTGCATTGCGTTTCGGTATGTTGTGGTTCATGGTAGAGGGACCCCCTGTAGACTAGTGCTTTTAACATTAACATTTGTATCATTGTCAATCAAACTGTAAATAACAATTGTTTTAAACTTAGAGGTTCATAATGCCCTTATTAAGTTGCAGTGGTTTTTTTTTTTAATGGAATTTCTTTTGTGGTATCATGTGATAGCAGGACAGATTATTTATATAACCGCATAAATTG ] [+] EMBL CB683079 [ GAAGCCTGATGAAGAGGATTACACAGGGTGGCACAGCAACCGGCTGACTTTTGAACCTGATTCTTCTAAGGATGGAATGACGAGGAAAGATGATCCAGATGACTATGTAGTGGTTGAT CCTCTCCTTGAGAAAGGAAAACAAAAATTCAACAAGATGCAAGCAAAGCTTAAGCGGAGAGAACGTGAATGGGCAGGCAGATCTCTGACCTGA CCGCATAAGCTGCTTGAGAGGTGCACCGTGCAAAAGATTACCTCATATCATAACAGTGCCACTACTGCAGTTTTGATGGTGTTGTAACTGTACACTGCGTTTCGCTATGTTGTGGTTCATGGTAGAGGGACCACCTGTAGACTAGTGCTTTTAACATTAACATTTGTATCATTGTCAATCAAACTGTAAATAACAATTGTTTTAAACTTAGAGGTTCATAATGCCCTTATTAAGTTGCAGTGG ] [+] EMBL AU056495 [ TGAAGAGGATTACACAGGGTGGCACAGCAACCGGCTGACTTTTGAACCTGATTCTTCTAAGGATGGAATGACGNGGAAAGATGATCCAGATGACTATGTAGTGGTTGATCCCTCTCCTTGAGAAAGGAANACAAAAATTCAACNAGATGCAAGCAAAGCTTAAGCGGAGAGAACGTGAATGGGCAGGCAGATCTCTGACCTGACCCGCATAAGCTGCTTGAGAGGTGCACCGTGCAAAAGATTACCTCATATCATAACAGTGCCACTACTGCAGTTTTGATGGTGTTGTAACTGTCCACTGCGTTTCGCTATGTTGTGGTTCATGGTAGAGGGACCNCCTGTAGACTAGTGCTTTTAACATTAACATTTGTATCATTGTCAATCAAACTGTAAATAACAATTGTTTTAAACTTAGAGGTTCATAATGCCCTTATTAAGTTGCAGTGGTCTTTTTTTTTATTGGAATTTCTTTTGTGGTATCATGTGCTA CAGGACAGATTATTTATATAACCGCATAAATTGATCCGACTCTTATCTTGGAACAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_14096#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 633 fasta sequence [NCNGGNACGCGTGGGCGGACGCGTGGGCCCTAGGGCAGAGCGGCGGAGGCGGAGGCCGGAGCGAAGCGGGAGGCCGGCGAGATGTCGTCGGTGTACGTGCTGGAGCCGCCGACGAAGGGCAAGGTGGTAGTGCAGACGACGGCCGGCCCGCTCGACATCGAGCTGTGGCCGAAGAGGCCCCCAAGGCGGTGCGCAACTTCGTGCAGCTCTGCCTCGAGGGCTACTACGACGGCACGCTCTTCCACCGCGTCATCAAGTCCTTCCTCGTCCAGGGCGGCGACCCCACCGGCTCCGGCACCGGGGGTGAGAGCATATATGGGGCCCCATTTGCAGATGAGTTCCATACGCGCTTGAGGTTTAACCACAGGGGTTTAGTGGCGTGTGCCAATGCCGGCACGCCTCACTCGAATGGGGAGTCAATTCTTTATCAGCCTTGACCGTTGTGATTGGCTCGATAAGAAGAATACCATCTTTGGGAAGGTCACTGGCGATTCTATTTTCAACCTTCTAGCCTTTGGCTGATATCGAGACTGATAAGGGATGATCGACCTGTGTAATCCGCAAGAAAAATTCTTTCAGTTTAGGTACTCTGGAACCCCATTTTGATGAATATTGTTCCAAGGCAAACTTAAN] [+] EMBL AU162691 [NCNGGNACGCGTGGGCGGACGCGTGGGCCCTAGGGCAGAGCGGCGGAGGCGGAGGCCGGAGCGAAGCGGGAGGCCGGCGAGATGTCGTCGGTGTACGTGCTGGAGCCGCCGACGAAGGGCAAGGTGGTAGTGCAGACGACGGCCGGCCCGCTCGACATCGAGCTGTGGCCGAAGAGGCCCCCAAGGCGGTGCGCAACTTCGTGCAGCTCTGCCTCGAGGGCTACTACGACGGCACGCTCTTCCACCGCGTCATCAAGTCCTTCCTCGTCCAGGGCGGCGACCCCACCGGCTCCGGCACCGGGGGTGAGAGCATATATGGGGCCCCATTTGCAGATGAGTTCCATACGCGCTTGAGGTTTAACCACAGGGGTTTAGTGGCGTGTGCCAATGCCGGCACGCCTCACTCGAATGGGGAGTCAATTCTTTATCAGCCTTGACCGTTGTGATTGGCTCGATAAGAAGAATACCATCTTTGGGAAGGTCACTGGCGATTCTATTTTCAACCTTCTAGCCTTTGGCTGATATCGAGACTGATAAGGGATGATCGACCTGTGTAATCCGCAAGAAAAATTCTTTCAGTTTAGGTACTCTGGAACCCCATTTTGATGAATATTGTTCCAAGGCAAACTTAAN] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14096#0 ------------------------------------------------------------ consensus_14096#2 ------------------------------------------------------------ consensus_14096#1 GCGCTCTCAAATCTAAGAAAACGCAGGGAGCTTGGGGACATCCGCTCTAGTGAAACCTCC 60 consensus_14096#0 ------------------------------------------------------------ consensus_14096#2 ------------------------------------------------------------ consensus_14096#1 AAAAAAACAGATAAAGCACACCGTAAAGACAAGGAGTTACCAGTTCACAGGAGTGACGAT 120 consensus_14096#0 ------TACGAACCCGAGCACCCGAGCCATCCCGACCGGCCGGA-GAGCGAGCCCTAGGG 53 consensus_14096#2 -------------------------NCNGGNACGCGTGGGCGGACGCGTGGGCCCTAGGG 35 consensus_14096#1 GACAATGATGACGACAATGAAGACCACCAGCTAACCAAGTCTAGAAAATTTTCTATGAAG 180 * * * * * * consensus_14096#0 CAGAGCGGCGGAGGC--GGAGGCCGGAGGCGAACGGGAGGCCGGCGA-GATGTCGTCGGT 110 consensus_14096#2 CAGAGCGGCGGAGGC--GGAGGCCGGAGCGAAGCGGGAGGCCGGCGA-GATGTCGTCGGT 92 consensus_14096#1 AAAAAAGGCATTGGCTCAGAAGCCAGTGCTGAAAGGATGTCCAAAGGCGATGCTAATT-T 239 * * *** *** ** *** * * * ** * ** * **** * consensus_14096#0 GTACGTGCTGGAGCC-GCCGACGAAGGGCAAGGT--GGTAGTGCAGACGACG-GCCGGCC 166 consensus_14096#2 GTACGTGCTGGAGCC-GCCGACGAAGGGCAAGGT--GGTAGTGCAGACGACG-GCCGGCC 148 consensus_14096#1 GCAGCTATTGAATCCAGCTGAGCAAGAGAAGCATTTGCAAAAACAGAAAAGGCGCCGTCT 299 * * * ** * ** ** ** *** * * * * * **** * * **** * consensus_14096#0 CGCTCGACATCGAGCTGTGGCCGAAGG-AGGCCCCCAAGGCGGTGCGCAACTTCGTGCAG 225 consensus_14096#2 CGCTCGACATCGAGCTGTGGCCGAAG--AGGCCCCCAAGGCGGTGCGCAACTTCGTGCAG 206 consensus_14096#1 TCAAGGCCGTGAAGATGAGACGTTAGCGAAGCTACAGAAGTTCAAGGCATCGTTTCTCAG 359 * * * ** ** * * ** * ** * * * *** * * *** consensus_14096#0 CTCTGCCTCGAGGGCTACTACGACGGCACG-----CTCTTCCACCGCGTCATCAAGTCCT 280 consensus_14096#2 CTCTGCCTCGAGGGCTACTACGACGGCACG-----CTCTTCCACCGCGTCATCAAGTCCT 261 consensus_14096#1 TAAGAACCCTGCAACTGGTAACACAGAAAAGAAGACTGATGAAGAGGATTACACAGGGTG 419 * * ** ** ** * * ** * * * * * ** consensus_14096#0 TCCTCGTC-CAGGGCGGCGACCCCACC-GGCTCCGGCACCGGGGGTGAGAGCATATATGG 338 consensus_14096#2 TCCTCGTC-CAGGGCGGCGACCCCACC-GGCTCCGGCACCGGGGGTGAGAGCATATATGG 319 consensus_14096#1 GCACAGCAACCGGCTGACTTTTGAACCTGATTCTTCTAAGGATGGAATGACGAGGAAAGA 479 * * * ** * * *** * ** * * ** ** * * * consensus_14096#0 GGCCCCATTTGCAGATG-AGT--TCCATACGCGC-TTGAGGTTTAACCACAGGGGTTTAG 394 consensus_14096#2 GGCCCCATTTGCAGATG-AGT--TCCATACGCGC-TTGAGGTTTAACCACAGGGGTTTAG 375 consensus_14096#1 TGATCCAGATGACTATGTAGTGGTTGATCCTCTCCTTGAGAAAGGAAAACAAAAATTCAA 539 * *** ** *** *** * ** * * * ***** * *** ** * consensus_14096#0 TGGCGTGTGC-CAATGCC--GGCACGCCTCACTCGAATGGG-AGTCAATTCTTTATCA-- 448 consensus_14096#2 TGGCGTGTGC-CAATGCC--GGCACGCCTCACTCGAATGGGGAGTCAATTCTTTATCA-- 430 consensus_14096#1 CAAGATGCAAGCAAAGCTTAAGCGGAGAGAACGTGAATGGGCAGGCAGATCTCTGACCTG 599 ** *** ** ** ** ******* ** ** *** * * consensus_14096#0 ---GCCTTGACCG-TTGTGATTGGCTCGATA-AGAAGAATACC--ATCTT-TGGGAAGGT 500 consensus_14096#2 ---GCCTTGACCG-TTGTGATTGGCTCGATA-AGAAGAATACC--ATCTT-TGGGAAGGT 482 consensus_14096#1 ACCGCATAAGCTGCTTGAGAGGTGCACCGTGCAAAAGATTACCTCATATCATAACAGTGC 659 ** * * * *** ** ** * * * **** **** ** * * * * consensus_14096#0 CACTG--GCGATTCTATT-----TTCAACCTTCTA--GCCTT-GGCTGATATCGAGACTG 550 consensus_14096#2 CACTG--GCGATTCTATT-----TTCAACCTTCTA--GCCTTTGGCTGATATCGAGACTG 533 consensus_14096#1 CACTACTGCAGTTTTGATGGTGTTGTAACTGTACACTGCGTTTCGCT-ATGTTGTGGTTC 718 **** ** ** * * * *** * * ** ** *** ** * * * * consensus_14096#0 ATAAGG-ATGATCGACCTGTGTA-TCCGCAG--AAAATTCTTTCAGTTGAGGTACTCTGG 606 consensus_14096#2 ATAAGGGATGATCGACCTGTGTAATCCGCAAGAAAAATTCTTTCAGTTTAGGTACTCTGG 593 consensus_14096#1 ATGGTAGAGGGACCACCTGTAGA-CTAGTGCTTTTAACATTAACATTTGTATCATTGTCA 777 ** * * * ****** * * ** * ** ** * * * consensus_14096#0 AACCCA--TTTGATGA-TATTGTTCCAAGGC--AA-CTTAAGAAGACTGAGCCTACTGCC 660 consensus_14096#2 AACCCCATTTTGATGAATATTGTTCCAAGGC--AAACTTAAN------------------ 633 consensus_14096#1 ATCAAACTGTAAATAACAATTGTTTTAAACTTAGAGGTTCATAATGCCCTTATTAAGTTG 837 * * * ** * ****** ** * ** * consensus_14096#0 AAGGGTGATATCGAGGGGAAATCAAAGAAGAAAGCCGTTAAGCAACTTAATGTGCTTTCA 720 consensus_14096#2 ------------------------------------------------------------ consensus_14096#1 CAGTGGTTTTTTTTTTTAATGGAATTTCTTTTGTGGTATCATGTGATAGCAGGACAGATT 897 consensus_14096#0 TTTGGAGATGAAGTAGAAGAGGAGGAGAATGAGGCAGCATCCTCTGTGAAGGACAAAATA 780 consensus_14096#2 ------------------------------------------------------------ consensus_14096#1 ATTTATATAACCGCATAAATTGATCCGACTCTTATCTTGGAACAAAAAAAAAAAAAAAAA 957 consensus_14096#0 AAAAGTATTCACGATGTGTTGGATGATCCTCGGTTTCTTAAAGGAGAGGCACCGGATGAG 840 consensus_14096#2 ------------------------------------------------------------ consensus_14096#1 AAAAAAAAAA-------------------------------------------------- 967 consensus_14096#0 CAACTGACCAAGGAGCAAGAGGACAAAAAAAAGGAGACTGTTCAATCTGTCAGGGAGGCT 900 consensus_14096#2 ------------------------------------------------------------ consensus_14096#1 ------------------------------------------------------------ consensus_14096#0 TTAGTATCAAAAAAATCTGACTTCAGAGAGCTAGAGCATGATTCAGAAACAGATGATTAT 960 consensus_14096#2 ------------------------------------------------------------ consensus_14096#1 ------------------------------------------------------------ consensus_14096#0 CCTGACGATGAAAACGAGGAGGATTTTGATAACAGAATGCGCTCTCAAATTCTAAGAAAA 1020 consensus_14096#2 ------------------------------------------------------------ consensus_14096#1 ------------------------------------------------------------ consensus_14096#0 CGCAGGGAGCTTGGGGACATCCGCTCTAGTGAAACCTCCAAAAAAACAGATAAAGCACAC 1080 consensus_14096#2 ------------------------------------------------------------ consensus_14096#1 ------------------------------------------------------------ consensus_14096#0 CGTAAAGACAAGGAGTTACCAGTTCACAGGAGTGACGATGACAATGATGACGACAATGAA 1140 consensus_14096#2 ------------------------------------------------------------ consensus_14096#1 ------------------------------------------------------------ consensus_14096#0 GACCACCAGCTAACCAAGTCTAGAAAATTTTCTATGAAGAAAAAAGGCATTGGCTCAGAA 1200 consensus_14096#2 ------------------------------------------------------------ consensus_14096#1 ------------------------------------------------------------ consensus_14096#0 GCCAGTGCTGAAAGGATGTCCAAAGGCGATGCTAATTTGCAGCTATTGAATCCAGCTGAG 1260 consensus_14096#2 ------------------------------------------------------------ consensus_14096#1 ------------------------------------------------------------ consensus_14096#0 CAAGAGAAGCATTTGCAAAAACAGAAAAGGCGCCGTCTTCAAGGCCGTGAAGATGAGACG 1320 consensus_14096#2 ------------------------------------------------------------ consensus_14096#1 ------------------------------------------------------------ consensus_14096#0 TTAGCGAAGCTACAGAAGTTCAAGGGATCGTTTCTCAGTAAGAACCCTGCAACTGGTAAC 1380 consensus_14096#2 ------------------------------------------------------------ consensus_14096#1 ------------------------------------------------------------ consensus_14096#0 ACAGAAAAGAAGACTGATGAAGAGGATTACACAGGGTGGCACAGCAACCGGCTGACTTTT 1440 consensus_14096#2 ------------------------------------------------------------ consensus_14096#1 ------------------------------------------------------------ consensus_14096#0 GAACCTGATTCTTCTAAGGATGGAATGACGAGGAAAGATGATCCAGATGACTATGTAGTG 1500 consensus_14096#2 ------------------------------------------------------------ consensus_14096#1 ------------------------------------------------------------ consensus_14096#0 GTTGATCCTCTCCTTGAGAAAGGAAAACAAAAATTCAACAAGATGCAAGCAAAGCTTAAG 1560 consensus_14096#2 ------------------------------------------------------------ consensus_14096#1 ------------------------------------------------------------ consensus_14096#0 CGGAGAGAACGTGAATGGGCAGGCAGATCTCTGACCTGACCGCATAAGCTGCTTGAGGTG 1620 consensus_14096#2 ------------------------------------------------------------ consensus_14096#1 ------------------------------------------------------------ consensus_14096#0 CTTTACTGTTTCCTTCATAAGCGGCCTTCCTGAATTTTTCAGCTTACATTAATTTATCCT 1680 consensus_14096#2 ------------------------------------------------------------ consensus_14096#1 ------------------------------------------------------------ consensus_14096#0 TTTTTTGCCTCTCAGAGGTGCACCGTGCAAAAGATTACCTCATATCATAACAGTGCCACT 1740 consensus_14096#2 ------------------------------------------------------------ consensus_14096#1 ------------------------------------------------------------ consensus_14096#0 ACTGCAGTTTTGATGGTGTTGTAACTGTACACTGCGTTTCGCTATGTTGTGGTTCATGGT 1800 consensus_14096#2 ------------------------------------------------------------ consensus_14096#1 ------------------------------------------------------------ consensus_14096#0 AGAGGGACCACCTGTAGACTAGTGCTTTTAACATTAACATTTGTATCATTGTCAATCAAA 1860 consensus_14096#2 ------------------------------------------------------------ consensus_14096#1 ------------------------------------------------------------ consensus_14096#0 CTGTAAATAACAATTGTTTTAAACTTAGAGGTTCATAATGCCCTTATTAAGTTGCAGTGG 1920 consensus_14096#2 ------------------------------------------------------------ consensus_14096#1 ------------------------------------------------------------ consensus_14096#0 TCTTTT 1926 consensus_14096#2 ------ consensus_14096#1 ------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||