These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14097#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 14 consensus length = 3550 fasta sequence [CCCAACCACCGGTCGCCGCCGGCGAGATGCTGCCCTACCACGGCGATCGCCACCGGGGCTCGCCCCCGCCGTACCCCGCGGCAGCGGCGCACTCCTCGCTCTCCCCCTCGGCCGCTCCCTTCACCGTGGACTGCCCCCGCCCCGCGGCGGATCCCAGGGTCCGCAACCCCAACCCCCCCGGGCTCGATCTCCCCACCGCGCCTTCCCTCTACACCACCGCCGCCGCCGGAGACTGGGGGAGCTCGTCGTGGATGGAACCCCCCGCCAGCTACATGGCCCCCTCCCCCGCCGCTGCCACCCCCCCGCCGCCGGCGTATAAAGGTGAAGCTCCTGAAACTGCACCATATGGTATATTCCCTGGGACTTGTCAAATTGGTAACTTTATGGTTACACGTCCATTGAGATCAGAGAGCTCACAACTAACAAGTGCAAAAGGTCCTGGAACTTGGCTAGGAAGTTCAGAGGTTCTGCCCAGTGGTGTTGGGCCATCAGTTTTTAGTCCGCAGCAGAATACCTTTGTGCATAAATCAGAAGATGCAGAACCTTATCCTACACAGCGAGGTTTATTACAGTATCCTCCTCAGTATCCTGCATATGACAAATACATGACACAGCTTTCATCATGTTCAACAAATGTGCCACCTCCTGTCATGTGGACGCCACCTGCCAATTCTTCTGAAGTGGTCGAACAAATGTTTCCAGTGATGAATAAAAATACTGGGGAAAGTTCTTCATCCTTTTCTTCATATATGAATCCTTGTAGAATCAACCTTGATTATTTTGATTGCATGTGGAATGAACAAAAAGATCTTGGGCATCAGACTACTGATAAACACCATGGAAAATGGAGCAGCTCTGCTAGCAATGCGGGAGACCATTTGCTCAATTCTCTTGGAGCAGATCACCGTGCTGCAAGGTGTTTTGGAAATGGGAGACCTATACAGGAATCTTCAGAGATGAAATATGACCGGGGTAGCTTTAATTCCAAAGTTTCTCCATCTGAGGTTGGATATGTTCAGTCTCGTGAATTTTCATCCGAGTTGCCTGAGGTTAATAACCCCACTGTTGATTCACCTTGTTGGAAGGGTGCACCTATTGCATATCCTCCTTCATTTGGTATTATGAAAAATACCGACAATTCCCACTCTGTAAATGGGGTAGGTGGTTATCAAATCGAGCAATCACCCGAATGGAGTTTAAAGTATTCAGAGCTATTCTCCAAACATCAGGAAGTATCAGCTTCTGAAAGTGTCAAAAGTGATGCTTTGAAGACATTCAAGTTGCCCGAGACACGTAAAAACACTGAAGATAATAAAGAAGTACTTCCGGTCTGTATTGGGGTTCATAATGGTATTGGTAACAATGCAAGTTATTTTCCTGAAGAACAAAATTCCAGAAGACAGAAATGCTATGATTCTACAGGAGATTGTAAGAACATGATAGCTGCGAATCAACAGGAAAACCTTTCAGTCAGCAAAGCCAAACTCTTAGGTGAGGATAGTTCCAACCATATTGGGAGCATAACTGAAGAATCAATTAACAAAGGGCCTAGTCCTCTTGGCAGTGCTCCTAGGGCTCTTGTTGAGAATCTGAGTGAAAGCCTACATGTTAATGTTTGTTCTCAAGCAGCTGGGGCAGAGGAATGCACACAGGCTCAAATATGTGCAAAAGGAGGTCAGCAGCCTCGCTATTATTCAGATTCTGGGGGGAGCATGTTGAAGACGTCTTCTGAATCAAGATCGAAGTCTCGGGCAGAACTTCTGAAACAAATGCATGATTTATCGGCAATGCTTCTGTCCACTTGCAATAGCGTTCCATTACAGGGATATGAAGAGGAACTTCTGCAATTAGTGATTCAAAATCTTAGAGATGCTAGTTCCTGTATAAGCAAGGTTCAAAATATGAGTTGTTCAAGGAATAACTTATGGATGGCAATGCCTGAACACTCATTAGTAGAGAACGATTCAGAATTGAAGACCTCTATTTCACAGGCTGTTGCTAAGCTCCCAGAGGATAAGACGCTTGATGATATTGATGTCTCGCAATTGTCGATCTACAAAAATTTGTGGGTTGAAGCAGAAGCATCAGCATGTAAGCTCAAATATGAGCTTCAACTTACCCGTGTGAAGCTTGCAGCAATGGAAAATCACAATAACACACAAGTTCCTGTTGACTTATCAAAAGGCAATAAAATCTTTATCTCAACCATACCCAATAGTAAACCACAAAACAGCACTGCCTATCCTGCGAACTTGCAATGTCAGGGAGCAGATAGTTGTGACGGGCAACTTCCTGCAGTAAATAGGAGCATCATTGATGGTGTTGATGCTGAGGTGATTGAGCGATTGAAATTTTTACAGTCCAATTTGAAGGATTGTCGTGCTTTTTGCCAAAACAACTGTGAAGAGCAGGAAGAAGCAAGCAAAAAACCATGTGCAATTGAAGATGCTGTTATGGCCAGGCTAAGGGTTTTGAATTCGTGTCCTGATAATATAGCCTCTCTAAAACAGGAAAACAACAACCACCACCAGCTAGATACAAGCACAAACAGAGCAGATAATATTGATGATGCTGTTATGTCTAGGCTGAGAATTTTGAAGTCCCGTCCTGATAATGTAAACCCACTGGGTCAGGAAAGCAGCAAGCATGAGCCAGATGCAGCTACAGGCACAAATAATTTTATTGACAATGCTGTTATGTCTAGGCTGAGAATTTTGAAGTCCCGTCCTGATAATGCAAACTCATTGGGTCAGGAAAGCAGCAAGCATGAGCCAGATGCAAGCACAGGCACAAATGATTTAATTGATAATGCTGTTATGTCTAGACTGAGAATTTTGAAGTGCCGTGACGATAATATAAATTCATT-GGACGATGCCATCAAGCAGCATGTAGAAGCAT-GTACTGAT-CAA-CC-AAATTGGGATGAAGATGGTGTTGTGGCCAAAATACAAGCTCCAAATGGC-G-ACACTGTGAGCACTGCTGACGGGTTCCAAAATATTCTGCA-TTCTAATAATTTTGTGAGGCACTCGGAAGGAAAAGATTCTGTCAGTGG-TCTAGACTCTCCTGGTGATGCAACCTGTAGTGATGAAGATAATGGTCGCAAGGCACCTTCTGATGAAGTCAATGACAAAACTGCAGTCCAAAGCGAAGGTAGTTTTCCCATGAACATTGGTTGGCCGCTAAGTACAATGGACTCTCATATTTGTACAGCAGGGTCTCAAGAGACGCCCCTAATCTCCTCTTCAGTTCACAGGTATGATATATTTCCGCCGAAGTGGGAGCATATGCTGAAGGAGAACTTCTTCCATCCAGGCAAATAGGCTACCGAACTGAAAGCTATCAAGGAGATCAAGCAACTATGTTTGCTCATGTTCTAACATGCTTATTGTACATATGCTATCGTAATAACGAAACCTGAAAGATCCATCGGTCCTTTTCCTCTATCTGTGACCAGTATATCATGATACACAACTGGTCAGCATATAAACATCTCATACCGTACGATGTATCTATAATAATTGTGCATATTTTGGAGTTTTCAAAAAAAATGTAT] [+] EMBL AK068850 [CCCAACCACCGGTCGCCGCCGGCGAGATGCTGCCCTACCACGGCGATCGCCACCGGGGCTCGCCCCCGCCGTACCCCGCGGCAGCGGCGCACTCCTCGCTCTCCCCCTCGGCCGCTCCCTTCACCGTGGACTGCCCCCGCCCCGCGGCGGATCCCAGGGTCCGCAACCCCAACCCCCCCGGGCTCGATCTCCCCACCGCGCCTTCCCTCTACACCACCGCCGCCGCCGGAGACTGGGGGAGCTCGTCGTGGATGGAACCCCCCGCCAGCTACATGGCCCCCTCCCCCGCCGCTGCCACCCCCCCGCCGCCGGCGTATAAAGGTGAAGCTCCTGAAACTGCACCATATGGTATATTCCCTGGGACTTGTCAAATTGGTAACTTTATGGTTACACGTCCATTGAGATCAGAGAGCTCACAACTAACAAGTGCAAAAGGTCCTGGAACTTGGCTAGGAAGTTCAGAGGTTCTGCCCAGTGGTGTTGGGCCATCAGTTTTTAGTCCGCAGCAGAATACCTTTGTGCATAAATCAGAAGATGCAGAACCTTATCCTACACAGCGAGGTTTATTACAGTATCCTCCTCAGTATCCTGCATATGACAAATACATGACACAGCTTTCATCATGTTCAACAAATGTGCCACCTCCTGTCATGTGGACGCCACCTGCCAATTCTTCTGAAGTGGTCGAACAAATGTTTCCAGTGATGAATAAAAATACTGGGGAAAGTTCTTCATCCTTTTCTTCATATATGAATCCTTGTAGAATCAACCTTGATTATTTTGATTGCATGTGGAATGAACAAAAAGATCTTGGGCATCAGACTACTGATAAACACCATGGAAAATGGAGCAGCTCTGCTAGCAATGCGGGAGACCATTTGCTCAATTCTCTTGGAGCAGATCACCGTGCTGCAAGGTGTTTTGGAAATGGGAGACCTATACAGGAATCTTCAGAGATGAAATATGACCGGGGTAGCTTTAATTCCAAAGTTTCTCCATCTGAGGTTGGATATGTTCAGTCTCGTGAATTTTCATCCGAGTTGCCTGAGGTTAATAACCCCACTGTTGATTCACCTTGTTGGAAGGGTGCACCTATTGCATATCCTCCTTCATTTGGTATTATGAAAAATACCGACAATTCCCACTCTGTAAATGGGGTAGGTGGTTATCAAATCGAGCAATCACCCGAATGGAGTTTAAAGTATTCAGAGCTATTCTCCAAACATCAGGAAGTATCAGCTTCTGAAAGTGTCAAAAGTGATGCTTTGAAGACATTCAAGTTGCCCGAGACACGTAAAAACACTGAAGATAATAAAGAAGTACTTCCGGTCTGTATTGGGGTTCATAATGGTATTGGTAACAATGCAAGTTATTTTCCTGAAGAACAAAATTCCAGAAGACAGAAATGCTATGATTCTACAGGAGATTGTAAGAACATGATAGCTGCGAATCAACAGGAAAACCTTTCAGTCAGCAAAGCCAAACTCTTAGGTGAGGATAGTTCCAACCATATTGGGAGCATAACTGAAGAATCAATTAACAAAGGGCCTAGTCCTCTTGGCAGTGCTCCTAGGGCTCTTGTTGAGAATCTGAGTGAAAGCCTACATGTTAATGTTTGTTCTCAAGCAGCTGGGGCAGAGGAATGCACACAGGCTCAAATATGTGCAAAAGGAGGTCAGCAGCCTCGCTATTATTCAGATTCTGGGGGGAGCATGTTGAAGACGTCTTCTGAATCAAGATCGAAGTCTCGGGCAGAACTTCTGAAACAAATGCATGATTTATCGGCAATGCTTCTGTCCACTTGCAATAGCGTTCCATTACAGGGATATGAAGAGGAACTTCTGCAATTAGTGATTCAAAATCTTAGAGATGCTAGTTCCTGTATAAGCAAGGTTCAAAATATGAGTTGTTCAAGGAATAACTTATGGATGGCAATGCCTGAACACTCATTAGTAGAGAACGATTCAGAATTGAAGACCTCTATTTCACAGGCTGTTGCTAAGCTCCCAGAGGATAAGACGCTTGATGATATTGATGTCTCGCAATTGTCGATCTACAAAAATTTGTGGGTTGAAGCAGAAGCATCAGCATGTAAGCTCAAATATGAGCTTCAACTTACCCGTGTGAAGCTTGCAGCAATGGAAAATCACAATAACACACAAGTTCCTGTTGACTTATCAAAAGGCAATAAAATCTTTATCTCAACCATACCCAATAGTAAACCACAAAACAGCACTGCCTATCCTGCGAACTTGCAATGTCAGGGAGCAGATAGTTGTGACGGGCAACTTCCTGCAGTAAATAGGAGCATCATTGATGGTGTTGATGCTGAGGTGATTGAGCGATTGAAATTTTTACAGTCCAATTTGAAGGATTGTCGTGCTTTTTGCCAAAACAACTGTGAAGAGCAGGAAGAAGCAAGCAAAAAACCATGTGCAATTGAAGATGCTGTTATGGCCAGGCTAAGGGTTTTGAATTCGTGTCCTGATAATATAGCCTCTCTAAAACAGGAAAACAACAACCACCACCAGCTAGATACAAGCACAAACAGAGCAGATAATATTGATGATGCTGTTATGTCTAGGCTGAGAATTTTGAAGTCCCGTCCTGATAATGTAAACCCACTGGGTCAGGAAAGCAGCAAGCATGAGCCAGATGCAGCTACAGGCACAAATAATTTTATTGACAATGCTGTTATGTCTAGGCTGAGAATTTTGAAGTCCCGTCCTGATAATGCAAACTCATTGGGTCAGGAAAGCAGCAAGCATGAGCCAGATGCAAGCACAGGCACAAATGATTTAATTGATAATGCTGTTATGTCTAGACTGAGAATTTTGAAGTGCCGTGACGATAATATAAATTCATT GGACGATGCCATCAAGCAGCATGTAGAAGCAT GTACTGAT CAA CC AAATTGGGATGAAGATGGTGTTGTGGCCAAAATACAAGCTCCAAATGGC G ACACTGTGAGCACTGCTGACGGGTTCCAAAATATTCTGCA TTCTAATAATTTTGTGAGGCACTCGGAAGGAAAAGATTCTGTCAGTGG TCTAGACTCTCCTGGTGATGCAACCTGTAGTGATGAAGATAATGGTCGCAAGGCACCTTCTGATGAAGTCAATGACAAAACTGCAGTCCAAAGCGAAGGTAGTTTTCCCATGAACATTGGTTGGCCGCTAAGTACAATGGACTCTCATATTTGTACAGCAGGGTCTCAAGAGACGCCCCTAATCTCCTCTTCAGTTCACAGGTATGATATATTTCCGCCGAAGTGGGAGCATATGCTGAAGGAGAACTTCTTCCATCCAGGCAAATAGGCTACCGAACTGAAAGCTATCAAGGAGATCAAGCAACTATGTTTGCTCATGTTCTAACATGCTTATTGTACATATGCTATCGTAATAACGAAACCTGAAAGATCCATCGGTCCTTTTCCTCTATCTGTGACCAGTATATCATGATACACAACTGGTCAGCATATAAACATCTCATACCGTACGATGTATCTATAATAATTGTGCATA ] [+] EMBL CF304192 [ CATGATAGCTGCGAATCAACAGGAAAACCTTTCAGTCAGCAAAGCCAAACTCTTAGGTGAGGATAGTTCCAACCATATTGGGAGCATAACTGAAGAATCAATTAACAAAGGGCCTAGTCCTCTTGGCAGTGCTCCTAGGGCTCTTGTTGAGAATCTGAGTGAAAGCCTACATGTTAATGTTTGTTCTCAAGCAGCTGGGGCAGAGGAATGCACACAGGCTCAAATATGTGCAAAAGGAGGTCAGCAGCCTCGCTATTATTCAGATTCTGGGGGGAGCATGTTGAAGACGTCTTCTGAATCAAGATCGAAGTCTCGGGCAGAACTTCTGAAACAAATGCATGATTTATCGGCAATGCTTCTGTCCACTTGCAATAGCGTTCCATTACAGGGATATGAAGAGGAACTTCTGCAATTAGTGATTCAAAATCTTAGAGATGCTAGTTCCTGTATAAGCAAGGTTCAAAATATGAGTTGTTCAAGGAATAACTTATGGATGGCAATGCCTGAACACTCATTAGTAGAGAACGATTCAGAATTGAAGACCTCTATTTCACAGGCTGTTGCTAAGCTCCCAGAGGATAAGACGCTTGATGATATTGAT ] [+] EMBL CF304127 [ CATGATAGCTGCGAATCAACAGGAAAACCTTTCAGTCAGCAAAGCCAAACTCTTAGGTGAGGATAGTTCCAACCATATTGGGAGCATAACTGAAGAATCAATTAACAAAGGGCCTAGTCCTCTTGGCAGTGCTCCTAGGGCTCTTGTTGAGAATCTGAGTGAAAGCCTACATGTTAATGTTTGTTCTCAAGCAGCTGGGGCAGAGGAATGCACACAGGCTCAAATATGTGCAAAAGGAGGTCAGCAGCCTCGCTATTATTCAGATTCTGGGGGGAGCATGTTGAAGACGTCTTCTGAATCAAGATCGAAGTCTCGGGCAGAACTTCTGAAACAAATGCATGATTTATCGGCAATGCTTCTGTCCACTTGCAATAGCGTTCCATTACAGGGATATGAAGAGGAACTTCTGCAATTAGTGATTCAAAATCTTAGAGATGCTAGTTCCTGTATAAGCAAGGTTCAAAATATGAGTTGTTCAAGGAATAACTTATGGATGGCAATGCCTGAACACTCATTAGTAGAGAACGATTCAGAATTGAAGACCTCTAT ] [+] EMBL OSS2602A [ gnanatACAAATGCATGATTTATCGGCAATGCTTCTGTCCACTTGCAATAGCGTTCCATTACAGGGATATGAAGAGGAACTTCTGCAATTAGTGATTCAAAATCTTAGAGATGCTAGTTCCTGTATAAGCAAGGTTCAAAATATGAGTTGTTCAAGGAATAACTTATGGATGGCAATGCCTGAACACTCATTAGTAGAGAACGATTCAGAATTGAAGACCTCTATTTCACAGGCTGTTGCTAAGCTCCCAGAGGATAAGACGCTTGATGATATTGATGTCTCGCAATTG ] [+] EMBL CA999686 [ GCTTCTGTCCACTTGCAATAGCGTTCCATTACAGGGATATGAAGAGGAACTTCTGCAATTAGTGATTCAAAATCTTAGAGATGCTAGTTCCTGTATAAGCAAGGTTCAAAATATGAGTTGTTCAAGGAATAACTTATGGATGGCAATGCCTGAACACTCATTAGTAGAGAACGATTCAGAATTGAAGACCTCTATTTCACAGGCTGTTGCTAAGCTCCCAGAGGATAAGACGCTTGATGATATTGATGTCTCGCAATTGTCGATCTACAAAAATTTGTGGGTTGAAGCAGAAGCATCAGCATGTAAGC ] [+] EMBL CF318776 [ AATAGTAAACCACAAAACAGCACTGCCTATCCTGCGAACTTGCAATGTCAGGGAGCAGATAGTTGTGACGGGCAACTTCCTGCAGTAAATAGGAGCATCATTGATGGTGTTGATGCTGAGGTGATTGAGCGATTGAAATTTTTACAGTCCAATTTGAAGGATTGTCGTGCTTTTTGCCAAAACAACTGTGAAGAGCAGGAAGAAGCAAGCAAAAAACCATGTGCAATTGAAGATGCTGTTATGGCCAGGCTAAGGGTTTTGAATTCGTGTCCTGATAATATAGCCTCTCTAAAACAGGAAAACAACAACCACCACCAGCTAGATACAAGCACAAACAGAGCAGATAATATTGATGATGCTGTTATGTCTAGGCTGAGAATTTTGAAGTCCCGTCCTGATAATGTAAACCCACTGGGTCAGGAAAGCAGCAAGCATGAGCCAGATGCAGCTACAGGCACAAATAATTTTATTGACAATGCTGTTATGTCTAGGCTGAGAATTTTGAAGTCCCGTCCTGATAATGCAAACTCATTGGGTCAGGAAAGCAGCAAGCATGAGCCAGATGCAAGCACAGGCACAAATGATTTAATTGATAATGC ] [+] EMBL CB675930 [ CCAAAACAACTGTGAAGAGCAGGAAGAAGCAAGCAAAAAACCATGTGCAATTGAAGATGCTGTTATGGCCAGGCTAAGGGTTTTGAATTCGTGTCCTGATAATATAGCCTCTCTAAAACAGGAAAACAACAACCACCACCAGCTAGATACAAGCACAAACAGAGCAGATAATATTGATGATGCTGTTATGTCTAGGCTGAGAATTTTGAAGTCCCGTCCTGATAATGTAAACCCACTGGGTCAGGAAAGCAGCAAGCATGAGCCAGATGCAGCTACAGGCACAAATAATTTTATTGACAATGCTGTTATGTCTAGGCTGAGAATTTTGAAGTCCCGTCCTGATAATGCAAACTCATTGGGTCAGGAAAGCAGCAAGCATGAGCCAGATGCAAGCACAGGCACAAATGATTTAATTGATAATGCTGTTATGTCTAGACTGAGAATTTTGAAGTGCCGTGACGATAATATAAATTCATT GGACGATGCCATCAAGCAGCATGTAGAAGCAT GTACTGAT CAA CC AAATTGGGATGAAGATGGTGTTGTGGCCAAAATACAAGCTCCAAATGGC G ACACTGTGAGCACTGCTGACGGGTTCCAAAATATTCTGCA TTCTAATAATTTTGTGAGGCACTCGGAAGGAAAAGATTCTGTCAGTGG TCTAGACTCTCCTGGTGATGCAACCTGTAGTGATGAAGATAATGGTCGCAAGGCACCTTCTGATGAAGTCAATGACAAAACTGCAGTCCAAAGCGAAAGTAGTTTTCCCATGAACATTGGTTGGCCGCTAAGTACAATGGACTCTC ] [+] EMBL OSR07191A [ AGCCAGATGCAGCTACAGGCACAAATAATTTTATTGACAATGCTGTTATGTCTAGGCTGAGAATTTTGAAGTCCCGTCCTGATAATGCAAACTCATTGGGTCAGGAAAGCAGCAAGCATGAGCCAGATGCAAGCACAGGCACAAATGATTTAATTGATAATGCTGTTATGTCTAGACTGAGAATTTTGAAGTGCCGTGACGATAATATAAATTCATT GGACGATGCCATCAAGCAGCATGTAGAAGCAT GTACTGNT CAA CC AAATTGGGATGAAGATGGTGTTGTGGCCAAAATACAAGCTCCAAATGGC GNCCACTGTGAGCACTGCTGACGGGTTCCAAAATATT ] [+] EMBL AU101633 [ AGCCAGATGCAGCTACAGGCACAAATAATTTTATTGACAATGCTGTTATGTCTAGGCTGAGAATTTTGAAGTCCCGTCCTGATAATGCAAACTCATTGGGTCAGGAAAGCAGCAAGCATGAGCCAGATGCAAGCACAGGCACAAATGATTTAATTGATAATGCTGTTATGTCTAGACTGAGAATTTTGAAGTGCCGTGACGATAATATAAATTCATT GGACGATGCCATCAAGCAGCATGTAGAAGCAT GTACTGAT CAA CC AAATTGGGATGAAGATGGTGTTGTGGCCAAAATACAAGCTCCAAATGGC G ACACTGTGAGCACTGCTGACGGGTTCCAAAATATTCTGCA TTCTAATAATTTTGTGAGGCACTCGGAAGGAAAAGATTCTGTCAGTGG TCTAGACTCTCCTGGTGATGCAACCTGTAGTGATGAAGATAATGGTCGCAAGGCACCTTCTGATGAAGTCAATGACAAAACTGCAGTCCAAAGCGAAGGTAGTTTTCCCATGAACATTGG ] [-] EMBL CB675931 [ ATGAGCCAGATGCAAGCACAGGCACAAATGATTTAATTGATAATGCTGTTATGTCTAGACTGAGAATTTTGAAGTGCCGTGACGATAATATAAATTCATT GGACGATGCCATCAAGCAGCATGTAGAAGCAT GTACTGAT CAA CC AAATTGGGATGAAGATGGTGTTGTGGCCAAAATACAAGCTCCAAATGGC G ACACTGTGAGCACTGCTGACGGGTTCCAAAATATTCTGCA TTCTAATAATTTTGTGAGGCACTCGGAAGGAAAAGATTCTGTCAGTGG TCTAGACTCTCCTGGTGATGCAACCTGTAGTGATGAAGATAATGGTCGCAAGGCACCTTCTGATGAAGTCAATGACAAAACTGCAGTCCAAAGCGAAGGTAGTTTTCCCATGAACATTGGTTGGCCGCTAAGTACAATGGACTCTCATATTTGTACAGCAGGGTCTCAAGAGACGCCCCTAATCTCCTCTTCAGTTCACAGGTATGATATATTTCCGCCGAAGTGGGAGCATATGCTGAAGGAGAACTTCTTCCATCCAGGCAAATAGGCTACCGAACTGAAAGCTATCAAGGAGATCAAGCAACTATGTTTGCTCATGTTCTAACATGCTTATTGTACATATGCTATCGTAATAACGAAACCTGAAAGATCCATCGGTCCTTTTCCTCTATCTGTGACCAGTATATCATGATACACAACTGGTCAGCATATAAACATCTCATACCGTACGATGTATCTATAATAATAGTGCATATTTTGGAGTTTTCATGAATTGTGTAT] [+] EMBL AU101634 [ CATT GGGCGATGCCATCAAGCAGCATGTAGAAGCAT GTACTGATCCAACCC AAATTGGGATGAAGATGGTGTTGTGGCCAAAATACAAGCTCCAAATGGC G ACACTGTGAGCACTGCTGACGGGTTCCAAAATATTCTGCA TTCTAATAATTTTGTGAGGCACTCGGAAGGAAAAGATTCTGTCAGTGG TCTAGACTCTCCTGGTGATGCAACCTGTAGTGATGAAGATAATGGTCGCAAGGCACCTTCTGATGAAGTCAATGACAAAACTGCAGTCCAAAGCGAAGGTAGTTTTCCCATGAACATTGGTTGGCCGCTAAGTACAATGGACTCTCATATTTGTACAGCAGGGTCTCAAGAGACGCCCCTAATCTCCTCTTCAGTTCACAGGTATGATATATTTCCGCCGAAGTGGGAGCATATGCTGAAGGAGAACTTCTTCCATCCAGGCAAATAGGCTACCGAACTGAAAGCTATCAAGGAGATCAAGCAACTATGTTTGCTCATGTTCTAACATGCTTATTGTACATATGCTATCGTAATAACGAAACCTGAAAGATCCATCGGTCCTTTTCCTCTATCTGTGACCAGTATATCATGATACACAACTGGTCAGCATATAAACATCTCATACCGTACGATGTATCTATAATAATTGTGCATATTTTGGAGTTTTCAAAAAAAA ] [+] EMBL AU164610 [ ATTGGGACGATGCCATCAAGCAGCATGTAGAAGCATGGTACTGAT CAA CCAAAATTGGGATGAAGATGGTGTTGTGGCCAAAATCCAAGCTCCAAATGGCGG ACACTGTGAGCACTGCTGACGGGTTCCAAAATATTCTGCA TTCTAATAATTTTGTGAGGCACTCGGAAGGAAAAGATTCTGTCAGTGG TCTAGACTCTCCTGGTGATGCAACCTGTAGTGATGAAGATAATGGTCGCAAGGCACCTTCTGATGAAGTCAATGACAAAACTGCAGTCCAAAGCGAAGGTAGTTTTCCCATGAACATTGGTTGGCCGCTAAGTACAATGGACTCTCATATTTGTACAGCAGGGTCTCAAGAGACGCCCCTAATCTCCTCTTCAGTTCACAGGTATGATATATTTCCGCCGAAGTGGGAGCATATGCTGAAGGAGAACTTCTTCCATCCAGGCAAATAGGCTACCGAACTGAAAGCTATCAAGGAGATCAAGCAACTATGTTTGCTCATGTTCTAACATGCTTATTGTACATATGCTATCGTAATAACGAAACCTGAAAGATCCATCGGTCCTTTTCCTCTATCTGTGACCAGTATATCATGATACACAACTGGTCAGCATATAAACATCTCATACCGTACGATGTATCTATAATAATTGTGCATATTTTGGAGTTTTCAAAAAAAA ] [-] EMBL CF318777 [ TGGC G ACACTGCGAGCACTGCTGACGGGTTCCAAAATATTCTGCA TTCTAATAATTTTGTGAGGCACTCGGAAGGAAAAGATTCTGTCAGTGG TCTAGACTCTCCTGGTGATGCAACCTGTAGTGATGAAGATAATGGTCGCAAGGCACCTTCTGATGAAGTCAATGACAAAACTGCAGTCCAAAGCGAAGGTAGTTTTCCCATGAACATTGGTTGGCCGCTAAGTACAATGGACTCTCATATTTGTACAGCAGGGTCTCAAGAGACGCCCCTAATCTCCTCTTCAGTTCACAGGTATGATATATTTCCGCCGAAGTGGGAGCATATGCTGAAGGAGAACTTCTTCCATCCAGGCAAATAGGCTACCGAACTGAAAGCTATCAAGGAGATCAAGCAACTATGTTTGCTCATGTTCTAACATGCTTATTGTACATATGCTATCGTAATAACGAAACCTGAAAGATCCATCGGTCCTTTTCCTCTATCTGTGACCAGTATATCATGATACACAACTGGTCAGCATATAAACATCTCATACCGTACGATGTATCTATAATAATTGTGCATATTTTGGAGTTTTAAAAAAAA ] [+] EMBL BI809892 [ TTCCAAAATATTCGGCATTTCTAATAATTTTGTGAGCCACTCGGAAGGAAAAGATTCTGTCAGTGGTTCTAGACTCTCCTGGTGAT CCACCTGTAGTGATGAAGATAATGGTTGCAAGGCACCTTCTGATGAAGTCAATGAC AAACTGCAGTCCCAAGCGAAGGTAGTTTTCCCATGAACATTGGTTGGCCGCTAAGTAC ATGGACTCTCATATTTGTACAGCAGGGTCTCAAGAGACGCCCCTAATCTCCTCTTCAGTTCACAGGTATGATATATTTCCGCCGAAGTGGGAGCATATGCTGAAGGAGAACTTCTTCCATCCAGGCAAATAGGCTACCGAACTGAAAGCTATCAAGGAGATCAAGCAACTATGTTTGCTCATGTTCTAACATGCTTATTGTACATATGCTATCGTAATAACGAAACCTGAAAGATCCATCGGTCCTTTTCCTCTATCTGTGACCAGTATATCATGATACAC ACTGGTCAGCATATAAACATCTCATACCGTACGATGTATCTATAATAATTGTGCATATTTTGGAGTTTTAAAAAAA ] consensusID : consensus_14097#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 382 fasta sequence [AGTGATGAAGATAATGGTCGCAAGGCACCTTCTGATGAAGTCAATGACAAAACTGCAGTCCAAAGCGAAGTTCACAGGTATGATATATTTCCGCCGAAGTGGGAGCATATGCTGAAGGAGAACTTCTTCCATCCAGGCAAATAGGCTACCGAACTGAAAGCTATCAAGGAGATCAAGCAACTATGTTTGCTCATGTTCTAACATGCTTATTGTACATATGCTATCGTAATAACGAAACCTGAAAGATCCATCGGTCCTTTTCCTCTATCTGTGACCAGTATATCATGATACACAACTGGTCAGCATATAAACATCTCATACCGTACGATGTATCTATAATAATTGTGCATATTTTGGAGTTTTCAAAAAAAAAAAAAAAAAA] [+] EMBL AU197821 [AGTGATGAAGATAATGGTCGCAAGGCACCTTCTGATGAAGTCAATGACAAAACTGCAGTCCAAAGCGAAGTTCACAGGTATGATATATTTCCGCCGAAGTGGGAGCATATGCTGAAGGAGAACTTCTTCCATCCAGGCAAATAGGCTACCGAACTGAAAGCTATCAAGGAGATCAAGCAACTATGTTTGCTCATGTTCTAACATGCTTATTGTACATATGCTATCGTAATAACGAAACCTGAAAGATCCATCGGTCCTTTTCCTCTATCTGTGACCAGTATATCATGATACACAACTGGTCAGCATATAAACATCTCATACCGTACGATGTATCTATAATAATTGTGCATATTTTGGAGTTTTCAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14097#0 CCCAACCACCGGTCGCCGCCGGCGAGATGCTGCCCTACCACGGCGATCGCCACCGGGGCT 60 consensus_14097#1 ------------------------------------------------------------ consensus_14097#0 CGCCCCCGCCGTACCCCGCGGCAGCGGCGCACTCCTCGCTCTCCCCCTCGGCCGCTCCCT 120 consensus_14097#1 ------------------------------------------------------------ consensus_14097#0 TCACCGTGGACTGCCCCCGCCCCGCGGCGGATCCCAGGGTCCGCAACCCCAACCCCCCCG 180 consensus_14097#1 ------------------------------------------------------------ consensus_14097#0 GGCTCGATCTCCCCACCGCGCCTTCCCTCTACACCACCGCCGCCGCCGGAGACTGGGGGA 240 consensus_14097#1 ------------------------------------------------------------ consensus_14097#0 GCTCGTCGTGGATGGAACCCCCCGCCAGCTACATGGCCCCCTCCCCCGCCGCTGCCACCC 300 consensus_14097#1 ------------------------------------------------------------ consensus_14097#0 CCCCGCCGCCGGCGTATAAAGGTGAAGCTCCTGAAACTGCACCATATGGTATATTCCCTG 360 consensus_14097#1 ------------------------------------------------------------ consensus_14097#0 GGACTTGTCAAATTGGTAACTTTATGGTTACACGTCCATTGAGATCAGAGAGCTCACAAC 420 consensus_14097#1 ------------------------------------------------------------ consensus_14097#0 TAACAAGTGCAAAAGGTCCTGGAACTTGGCTAGGAAGTTCAGAGGTTCTGCCCAGTGGTG 480 consensus_14097#1 ------------------------------------------------------------ consensus_14097#0 TTGGGCCATCAGTTTTTAGTCCGCAGCAGAATACCTTTGTGCATAAATCAGAAGATGCAG 540 consensus_14097#1 ------------------------------------------------------------ consensus_14097#0 AACCTTATCCTACACAGCGAGGTTTATTACAGTATCCTCCTCAGTATCCTGCATATGACA 600 consensus_14097#1 ------------------------------------------------------------ consensus_14097#0 AATACATGACACAGCTTTCATCATGTTCAACAAATGTGCCACCTCCTGTCATGTGGACGC 660 consensus_14097#1 ------------------------------------------------------------ consensus_14097#0 CACCTGCCAATTCTTCTGAAGTGGTCGAACAAATGTTTCCAGTGATGAATAAAAATACTG 720 consensus_14097#1 ------------------------------------------------------------ consensus_14097#0 GGGAAAGTTCTTCATCCTTTTCTTCATATATGAATCCTTGTAGAATCAACCTTGATTATT 780 consensus_14097#1 ------------------------------------------------------------ consensus_14097#0 TTGATTGCATGTGGAATGAACAAAAAGATCTTGGGCATCAGACTACTGATAAACACCATG 840 consensus_14097#1 ------------------------------------------------------------ consensus_14097#0 GAAAATGGAGCAGCTCTGCTAGCAATGCGGGAGACCATTTGCTCAATTCTCTTGGAGCAG 900 consensus_14097#1 ------------------------------------------------------------ consensus_14097#0 ATCACCGTGCTGCAAGGTGTTTTGGAAATGGGAGACCTATACAGGAATCTTCAGAGATGA 960 consensus_14097#1 ------------------------------------------------------------ consensus_14097#0 AATATGACCGGGGTAGCTTTAATTCCAAAGTTTCTCCATCTGAGGTTGGATATGTTCAGT 1020 consensus_14097#1 ------------------------------------------------------------ consensus_14097#0 CTCGTGAATTTTCATCCGAGTTGCCTGAGGTTAATAACCCCACTGTTGATTCACCTTGTT 1080 consensus_14097#1 ------------------------------------------------------------ consensus_14097#0 GGAAGGGTGCACCTATTGCATATCCTCCTTCATTTGGTATTATGAAAAATACCGACAATT 1140 consensus_14097#1 ------------------------------------------------------------ consensus_14097#0 CCCACTCTGTAAATGGGGTAGGTGGTTATCAAATCGAGCAATCACCCGAATGGAGTTTAA 1200 consensus_14097#1 ------------------------------------------------------------ consensus_14097#0 AGTATTCAGAGCTATTCTCCAAACATCAGGAAGTATCAGCTTCTGAAAGTGTCAAAAGTG 1260 consensus_14097#1 ------------------------------------------------------------ consensus_14097#0 ATGCTTTGAAGACATTCAAGTTGCCCGAGACACGTAAAAACACTGAAGATAATAAAGAAG 1320 consensus_14097#1 ------------------------------------------------------------ consensus_14097#0 TACTTCCGGTCTGTATTGGGGTTCATAATGGTATTGGTAACAATGCAAGTTATTTTCCTG 1380 consensus_14097#1 ------------------------------------------------------------ consensus_14097#0 AAGAACAAAATTCCAGAAGACAGAAATGCTATGATTCTACAGGAGATTGTAAGAACATGA 1440 consensus_14097#1 ------------------------------------------------------------ consensus_14097#0 TAGCTGCGAATCAACAGGAAAACCTTTCAGTCAGCAAAGCCAAACTCTTAGGTGAGGATA 1500 consensus_14097#1 ------------------------------------------------------------ consensus_14097#0 GTTCCAACCATATTGGGAGCATAACTGAAGAATCAATTAACAAAGGGCCTAGTCCTCTTG 1560 consensus_14097#1 ------------------------------------------------------------ consensus_14097#0 GCAGTGCTCCTAGGGCTCTTGTTGAGAATCTGAGTGAAAGCCTACATGTTAATGTTTGTT 1620 consensus_14097#1 ------------------------------------------------------------ consensus_14097#0 CTCAAGCAGCTGGGGCAGAGGAATGCACACAGGCTCAAATATGTGCAAAAGGAGGTCAGC 1680 consensus_14097#1 ------------------------------------------------------------ consensus_14097#0 AGCCTCGCTATTATTCAGATTCTGGGGGGAGCATGTTGAAGACGTCTTCTGAATCAAGAT 1740 consensus_14097#1 ------------------------------------------------------------ consensus_14097#0 CGAAGTCTCGGGCAGAACTTCTGAAACAAATGCATGATTTATCGGCAATGCTTCTGTCCA 1800 consensus_14097#1 ------------------------------------------------------------ consensus_14097#0 CTTGCAATAGCGTTCCATTACAGGGATATGAAGAGGAACTTCTGCAATTAGTGATTCAAA 1860 consensus_14097#1 ------------------------------------------------------------ consensus_14097#0 ATCTTAGAGATGCTAGTTCCTGTATAAGCAAGGTTCAAAATATGAGTTGTTCAAGGAATA 1920 consensus_14097#1 ------------------------------------------------------------ consensus_14097#0 ACTTATGGATGGCAATGCCTGAACACTCATTAGTAGAGAACGATTCAGAATTGAAGACCT 1980 consensus_14097#1 ------------------------------------------------------------ consensus_14097#0 CTATTTCACAGGCTGTTGCTAAGCTCCCAGAGGATAAGACGCTTGATGATATTGATGTCT 2040 consensus_14097#1 ------------------------------------------------------------ consensus_14097#0 CGCAATTGTCGATCTACAAAAATTTGTGGGTTGAAGCAGAAGCATCAGCATGTAAGCTCA 2100 consensus_14097#1 ------------------------------------------------------------ consensus_14097#0 AATATGAGCTTCAACTTACCCGTGTGAAGCTTGCAGCAATGGAAAATCACAATAACACAC 2160 consensus_14097#1 ------------------------------------------------------------ consensus_14097#0 AAGTTCCTGTTGACTTATCAAAAGGCAATAAAATCTTTATCTCAACCATACCCAATAGTA 2220 consensus_14097#1 ------------------------------------------------------------ consensus_14097#0 AACCACAAAACAGCACTGCCTATCCTGCGAACTTGCAATGTCAGGGAGCAGATAGTTGTG 2280 consensus_14097#1 ------------------------------------------------------------ consensus_14097#0 ACGGGCAACTTCCTGCAGTAAATAGGAGCATCATTGATGGTGTTGATGCTGAGGTGATTG 2340 consensus_14097#1 ------------------------------------------------------------ consensus_14097#0 AGCGATTGAAATTTTTACAGTCCAATTTGAAGGATTGTCGTGCTTTTTGCCAAAACAACT 2400 consensus_14097#1 ------------------------------------------------------------ consensus_14097#0 GTGAAGAGCAGGAAGAAGCAAGCAAAAAACCATGTGCAATTGAAGATGCTGTTATGGCCA 2460 consensus_14097#1 ------------------------------------------------------------ consensus_14097#0 GGCTAAGGGTTTTGAATTCGTGTCCTGATAATATAGCCTCTCTAAAACAGGAAAACAACA 2520 consensus_14097#1 ------------------------------------------------------------ consensus_14097#0 ACCACCACCAGCTAGATACAAGCACAAACAGAGCAGATAATATTGATGATGCTGTTATGT 2580 consensus_14097#1 ------------------------------------------------------------ consensus_14097#0 CTAGGCTGAGAATTTTGAAGTCCCGTCCTGATAATGTAAACCCACTGGGTCAGGAAAGCA 2640 consensus_14097#1 ------------------------------------------------------------ consensus_14097#0 GCAAGCATGAGCCAGATGCAGCTACAGGCACAAATAATTTTATTGACAATGCTGTTATGT 2700 consensus_14097#1 ------------------------------------------------------------ consensus_14097#0 CTAGGCTGAGAATTTTGAAGTCCCGTCCTGATAATGCAAACTCATTGGGTCAGGAAAGCA 2760 consensus_14097#1 ------------------------------------------------------------ consensus_14097#0 GCAAGCATGAGCCAGATGCAAGCACAGGCACAAATGATTTAATTGATAATGCTGTTATGT 2820 consensus_14097#1 ------------------------------------------------------------ consensus_14097#0 CTAGACTGAGAATTTTGAAGTGCCGTGACGATAATATAAATTCATTGGACGATGCCATCA 2880 consensus_14097#1 ------------------------------------------------------------ consensus_14097#0 AGCAGCATGTAGAAGCATGTACTGATCAACCAAATTGGGATGAAGATGGTGTTGTGGCCA 2940 consensus_14097#1 ------------------------------------------------------------ consensus_14097#0 AAATACAAGCTCCAAATGGCGACACTGTGAGCACTGCTGACGGGTTCCAAAATATTCTGC 3000 consensus_14097#1 ------------------------------------------------------------ consensus_14097#0 ATTCTAATAATTTTGTGAGGCACTCGGAAGGAAAAGATTCTGTCAGTGGTCTAGACTCTC 3060 consensus_14097#1 ------------------------------------------------------------ consensus_14097#0 CTGGTGATGCAACCTGTAGTGATGAAGATAATGGTCGCAAGGCACCTTCTGATGAAGTCA 3120 consensus_14097#1 -----------------AGTGATGAAGATAATGGTCGCAAGGCACCTTCTGATGAAGTCA 43 ******************************************* consensus_14097#0 ATGACAAAACTGCAGTCCAAAGCGAAGGTAGTTTTCCCATGAACATTGGTTGGCCGCTAA 3180 consensus_14097#1 ATGACAAAACTGCAGTCCAAAGCGAAG--------------------------------- 70 *************************** consensus_14097#0 GTACAATGGACTCTCATATTTGTACAGCAGGGTCTCAAGAGACGCCCCTAATCTCCTCTT 3240 consensus_14097#1 ------------------------------------------------------------ consensus_14097#0 CAGTTCACAGGTATGATATATTTCCGCCGAAGTGGGAGCATATGCTGAAGGAGAACTTCT 3300 consensus_14097#1 ---TTCACAGGTATGATATATTTCCGCCGAAGTGGGAGCATATGCTGAAGGAGAACTTCT 127 ********************************************************* consensus_14097#0 TCCATCCAGGCAAATAGGCTACCGAACTGAAAGCTATCAAGGAGATCAAGCAACTATGTT 3360 consensus_14097#1 TCCATCCAGGCAAATAGGCTACCGAACTGAAAGCTATCAAGGAGATCAAGCAACTATGTT 187 ************************************************************ consensus_14097#0 TGCTCATGTTCTAACATGCTTATTGTACATATGCTATCGTAATAACGAAACCTGAAAGAT 3420 consensus_14097#1 TGCTCATGTTCTAACATGCTTATTGTACATATGCTATCGTAATAACGAAACCTGAAAGAT 247 ************************************************************ consensus_14097#0 CCATCGGTCCTTTTCCTCTATCTGTGACCAGTATATCATGATACACAACTGGTCAGCATA 3480 consensus_14097#1 CCATCGGTCCTTTTCCTCTATCTGTGACCAGTATATCATGATACACAACTGGTCAGCATA 307 ************************************************************ consensus_14097#0 TAAACATCTCATACCGTACGATGTATCTATAATAATTGTGCATATTTTGGAGTTTTCAAA 3540 consensus_14097#1 TAAACATCTCATACCGTACGATGTATCTATAATAATTGTGCATATTTTGGAGTTTTCAAA 367 ************************************************************ consensus_14097#0 AAAAATGTAT----- 3550 consensus_14097#1 AAAAAAAAAAAAAAA 382 ***** * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||